@Techreport{adcroft02,
  author =	 {Alistair Adcroft and Jean-Michel Campin and Patrick
                  Heimbach and Christopher Hill and John Marshall},
  title =	 {{MITgcm} {R}elease 1 {M}anual},
  institution =	 {{MIT}/{EAPS}},
  year =	 {2002},
  type =	 {Online documentation},
  number =	 {~},
  address =	 {Cambridge, MA 02139, USA},
  note =
                  {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
}

@Article{adcroft04,
  author =	 {Alistair Adcroft and Jean-Michel Campin},
  title =	 {Rescaled Height Coordinates for Accurate
                  Representation of Free-Surface Flows in Ocean
                  Circulation Models},
  journal =	 omg,
  year =	 2004,
  volume =	 7,
  number =	 {3-4},
  pages =	 {269--284}
}

@Article{adcroft04:_cubed_sphere,
  author =	 {Alistair Adcroft and Jean-Michel Campin and
                  Christopher N. Hill and John C. Marshall},
  title =	 {Implementation of an Atmosphere-Ocean General
                  Circulation Model on the Expanded Spherical Cube},
  journal =	 mwr,
  year =	 2004,
  volume =	 132,
  number =	 12,
  pages =	 {2845--2863}
}

@Article{adcroft97:_shaved_cells,
  author =	 {Alistair Adcroft and Christopher Hill and John
                  Marshall},
  title =	 {Representation of Topography by Shaved Cells in a
                  Height Coordinate Ocean Model},
  journal =	 mwr,
  year =	 1997,
  volume =	 125,
  number =	 9,
  pages =	 {2293--2315}
}

@Article{adcroft99,
  author =	 {Alistair Adcroft and Christopher Hill and John
                  Marshall},
  title =	 {A New Treatment of the {C}oriolis Terms in {C}-Grid
                  Models at Both High and Low Resolutions},
  journal =	 mwr,
  year =	 1999,
  volume =	 127,
  pages =	 {1928--1936}
}

@InProceedings{brugge91,
  author =	 {Roger Brugge and Helen L. Jones and John
                  C. Marshall},
  title =	 {Non-Hydrostatic Ocean Modeling for Studies of
                  Open-Ocean Deep Convection},
  booktitle =	 {Deep Convection and Deep Water Formation in the
                  Ocean},
  editor =	 {P. C. Chu and J. C. Gascard},
  pages =	 {325--340},
  year =	 1991,
  volume =	 57,
  series =	 {Elsevier Oceanogr. Ser.},
  address =	 {New York},
  publisher =	 {Elsevier Sci.}
}

@Article{visbeck96,
  author =	 {Martin Visbeck and John Marshall and Helen Jones},
  title =	 {Dynamics of Isolated Convective Regions in the
                  Ocean},
  journal =	 jpo,
  year =	 1996,
  volume =	 26,
  number =	 9,
  pages =	 {1721--1734}
}

@Article{bryan84,
  author =	 {Kirk Bryan},
  title =	 {Accelerating the Convergence to Equilibrium of
                  Ocean-Climate Models},
  journal =	 jpo,
  year =	 1984,
  volume =	 14,
  number =	 4,
  pages =	 {1455--1471}
}

@PhdThesis{bugnion01:_thesis,
  author =	 {V{\'e}ronique Bugnion},
  title =	 {Driving the Ocean's Overturning: An Adjoint
                  Sensitivity Study},
  school =	 {MIT},
  year =	 {2001},
  OPTkey =	 {},
  OPTtype =	 {},
  OPTaddress =	 {},
  OPTmonth =	 {},
  OPTnote =	 {},
  OPTannote =	 {}
}

@Article{campin04,
  author =	 {Jean-Michel Campin and Alistair Adcroft and
                  Christopher Hill and John Marshall},
  title =	 {Conservation of Properties in a Free-Surface Model},
  journal =	 omg,
  year =	 2004,
  volume =	 {6},
  number =	 {3--4},
  pages =	 {221--244}
}

@Article{danabasoglu96,
  author =	 {Gokhan Danabasoglu and James C. McWilliams and
                  William G. Large},
  title =	 {Approach to Equilibrium in Accelerated Global
                  Oceanic Models},
  journal =	 jcl,
  year =	 1996,
  volume =	 9,
  number =	 5,
  pages =	 {1092--1110}
}

@Article{gent90,
  author =	 {Peter R. Gent and James C. McWilliams},
  title =	 {Isopycnal Mixing in Ocean Circulation Models},
  journal =	 jpo,
  year =	 1990,
  volume =	 20,
  number =	 1,
  pages =	 {150--155}
}

@Article{gerdes91,
  author =	 {R{\"u}diger Gerdes and Cornelia K{\"o}berle and
                  J{\"u}rgen Willebrand},
  title =	 {The Influence of Numerical Advection Schemes on the
                  Results of Ocean General Circulation Models},
  journal =	 cdyn,
  year =	 1991,
  volume =	 5,
  pages =	 {211--226}
}

@Incollection{heimbach02,
  author =	 {Patrick Heimbach and Christopher Hill and Ralf
                  Giering},
  title =	 {Automatic Generation of Efficient Adjoint Code for a
                  Parallel {N}avier-{S}tokes Solver},
  booktitle =	 {Computational Science -- ICCS 2002},
  publisher =	 {Springer-Verlag},
  year =	 {2002},
  editor =	 {{J.J. Dongarra, P.M.A. Sloot and C.J.K. Tan}},
  volume =	 {2331, part 3},
  series =	 {Lecture Notes in Computer Science},
  pages =	 {1019-1028},
  address =	 {Berlin (Germany)},
}

@Incollectionu{heimbach03,
  author =	 {Patrick Heimbach and Uwe Naumann},
  title =	 {Coupling tangent-linear and adjoint models},
  booktitle =	 {ICCS 2003},
  publisher =	 {Springer-Verlag},
  year =	 {2003},
  editor =	 {{V. Kumar, M. Gavrilova, C.J.K. Tan, P. L'Ecuyer}},
  volume =	 {2668, part II},
  series =	 {Lecture Notes in Computer Science},
  pages =	 {105--114},
  address =	 {Berlin (Germany)},
}
@Article{heimbach05,
  author =	 {Patrick Heimbach and Christopher Hill and Ralf
                  Giering},
  title =	 {An efficient exact adjoint of the parallel {MIT}
                  general circulation model, generated via automatic
                  differentiation},
  journal =	 {Future Generation Computer Systems (FGCS)},
  year =	 2005,
  volume =	 21,
  number =	 8,
  pages =	 {1356--1371},
  doi =		 {10.1016/j.future.2004.11.010},
}

@Article{hill06,
  author =	 {Chris Hill and Dimitris Menemenlis and Bob Ciotti
                  and Chri Henze},
  title =	 {Investigating solution convergence in a global ocean
                  model using a 2048-processor cluster of distributed
                  shared memory machines},
  journal =	 {submitted},
  year =	 {2006},
  OPTkey =	 {},
  OPTvolume =	 {},
  OPTnumber =	 {},
  OPTpages =	 {},
  OPTmonth =	 {},
  OPTnote =	 {},
  OPTannote =	 {}
}

@Article{hill06b,
  author =	 {Chris Hill and Dimitris Menemenlis and Bob Ciotti
                  and Chri Henze},
  title =	 {Are We There Yet? {I}nvestigating Solution
                  Convergence in a High-Resolution Global Ocean Model
                  with a 2048 Processor Cluster of Distributed Shared
                  Memory {SGI Altix} Machines},
  journal =	 tocs,
  year =	 {2006},
  OPTkey =	 {},
  volume =	 {{$\!$}, submitted},
  OPTnumber =	 {},
  OPTpages =	 {},
  OPTmonth =	 {},
  OPTnote =	 {},
  OPTannote =	 {}
}

@Article{jones93,
  author =	 {Helen L. Jones and John C. Marshall},
  title =	 {Convection with Rotation in a Neutral Ocean: A Study
                  of Open-Ocean Deep Convection},
  journal =	 jpo,
  year =	 1993,
  volume =	 23,
  number =	 6,
  pages =	 {1009--1039}
}

@Article{jones97,
  author =	 {Helen L. Jones and John C. Marshall},
  title =	 {Restratification after Deep Convection},
  journal =	 jpo,
  year =	 1997,
  volume =	 27,
  number =	 10,
  pages =	 {2276--2287}
}

@Article{khatiwala03,
  author =	 {Samar Khatiwala},
  title =	 {Generation of Internal Tides in an Ocean of Finite
                  Depth: Analytical and Numerical Calculations},
  journal =	 dsrone,
  year =	 2003,
  volume =	 50,
  pages =	 {3--21}
}

@Article{large81,
  author =	 {William G. Large and S. Pond},
  title =	 {Open Ocean Momentum Flux Measurements in Moderate to
                  Strong Winds},
  journal =	 jpo,
  year =	 {1981},
  volume =	 {11},
  pages =	 {324--336},
}

@Article{large82,
  author =	 {William G. Large and S. Pond},
  title =	 {Sensible and Latent Heat Flux Measurements over the
                  Ocean},
  journal =	 jpo,
  year =	 {1982},
  volume =	 {12},
  pages =	 {464--482},
}

@Article{large94,
  author =	 {Large, W. G. and J. C. McWilliams and S. C. Doney},
  title =	 {Oceanic Vertical Mixing: A Review and a Model with a
                  Nonlocal Boundary Layer Parameterization},
  journal =	 rgeo,
  year =	 1994,
  volume =	 32,
  number =	 4,
  pages =	 {363--404}
}

@Article{large97,
  author =	 {William G. Large and Gokhan Danabasoglu and Scott
                  C. Doney and James C. McWilliams},
  title =	 {Sensitivity of Surface Forcing and Boundary Layer
                  Mixing in a Global Ocean Model: Annual-Mean
                  Climatology},
  journal =	 jpo,
  year =	 1997,
  volume =	 27,
  number =	 11,
  pages =	 {2418--2447}
}

@Article{legg03,
  author =	 {Sonya Legg and Alistair Adcroft},
  title =	 {Internal Wave Breaking on Concave and Convex
                  Continental Slopes},
  journal =	 jpo,
  year =	 2003,
  volume =	 33,
  number =	 11,
  pages =	 {2224-2246}
}

@Article{marotzke99:_construction_adjoint_mitgcm,
  author =	 {Jochem Marotzke and Ralf Giering and Kate Q. Zang
                  and Detlef Stammer and Christopher Hill and Tong
                  Lee},
  title =	 {Construction of the Adjoint {MIT} Ocean General
                  Circulation Model and Application to {A}tlantic Heat
                  Transport Sensitivity},
  journal =	 jgr,
  year =	 1999,
  volume =	 104,
  number =	 {C12},
  pages =	 {29529--29547}
}

@Article{marshall04:_isomorphism,
  author =	 {John Marshall and Alistair Adcroft and Jean-Michel
                  Campin and Christopher Hill and Andy White},
  title =	 {Atmosphere-Ocean Modeling Exploiting Fluid
                  Isomorphisms},
  journal =	 mwr,
  year =	 2004,
  volume =	 132,
  number =	 12,
  pages =	 {2882--2994}
}

@Article{marshall97:_finit_volum_incom_navier_stokes,
  author =	 {John Marshall and Alistair Adcroft and Christopher
                  Hill and Lev Perelman and Curt Heisey},
  title =	 {A Finite-Volume, Incompressible {N}avier {S}tokes
                  Model for Studies of the Ocean on Parallel
                  Computers},
  journal =	 jgr,
  year =	 1997,
  volume =	 102,
  number =	 {C3},
  pages =	 {5753--5766}
}

@Article{marshall97:_hydros_quasi_hydros_nonhy,
  author =	 {John Marshall and Christopher Hill and Lev Perelman
                  and Alistair Adcroft},
  title =	 {Hydrostatic, Quasi-Hydrostatic, and Nonhydrostatic
                  Ocean Modeling},
  journal =	 jgr,
  year =	 1997,
  volume =	 102,
  number =	 {C3},
  pages =	 {5733--5752}
}

@Article{marshall98,
  author =	 {John Marshall and Helen Jones and Christopher Hill},
  title =	 {Efficient Ocean Modeling Using Non-Hydrostatic
                  Algorithms},
  journal =	 jms,
  year =	 1998,
  volume =	 18,
  number =	 {1--3},
  pages =	 {115--134}
}

@ARTICLE{menemenlis05,
  author =	 {D. Menemenlis and C. Hill and A. Adcroft and
                  J.M. Campin and B. Cheng and B. Ciotti and
                  I. Fukumori and A. Koehl and P. Heimbach and
                  C. Henze and T. Lee and D. Stammer and J. Taft and
                  J. Zhang},
  title =	 {Towards eddy permitting estimates of the global
                  ocean and sea-ice circulations.},
  journal =	 {EOS Transactions AGU},
  year =	 2005,
  volume =	 {86(9)},
  pages =	 89,
}

@Techreport{mitgcm02,
  author =	 {{MITgcm~Group}},
  title =	 {{MITgcm} {R}elease 1 {M}anual},
  institution =	 {{MIT}/{EAPS}},
  year =	 {2002},
  type =	 {Online documentation},
  OPTnumber =	 {~},
  address =	 {Cambridge, MA 02139, USA},
  note =         {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
}

@TechReport{stammer97:_global_ocean_circul_estim_topex,
  author =	 {Detlef Stammer and Carl Wunsch and Ralf Giering and
                  Qian Zhang and Jochem Marotzke and John Marshall and
                  Christopher Hill},
  title =	 {The Global Ocean Circulation Estimated from
                  {TOPEX}/{POSEIDON} Altimetry and the {MIT} General
                  Circulation Model},
  institution =	 {Massachusetts Institute of Technology},
  year =	 1997,
  type =	 {Center for Global Change Science Report},
  number =	 49,
  address =	 {Cambridge, MA 02139}
}

@Article{wardle00,
  author =	 {Richard Wardle and John Marshall},
  title =	 {Representation of Eddies in Primitive Equation
                  Models by a {PV} Flux},
  journal =	 jpo,
  year =	 2000,
  volume =	 30,
  number =	 10,
  pages =	 {2481--2503}
}