| 1 | Run arctic40km adjoint | 
| 2 | ###################### | 
| 3 |  | 
| 4 | Current setup is 1-year 1979, on 15 procs | 
| 5 | ----------------------------------------- | 
| 6 | o cost terms are | 
| 7 | * theta/salt climatology (incl. annual cycle) | 
| 8 | * SST, SSS | 
| 9 | * daily seaice concentration | 
| 10 | (see code_ad/ECCO_CPPOPTIONS.h, | 
| 11 | input_ad/data.ecco, input_ad/data.seaice) | 
| 12 | o forward part has all kpp, gmredi, seaice, | 
| 13 | adjoint part has SEAICEuseDYNAMICS=.FALSE., see | 
| 14 | code_ad/autodiff_inadmode_set_ad.F | 
| 15 | code_ad/autodiff_inadmode_unset_ad.F | 
| 16 |  | 
| 17 | To build code (on columbia): | 
| 18 | --------------------------- | 
| 19 | cd build/ | 
| 20 | ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas -mods ../code_ad | 
| 21 | make depend | 
| 22 | make adtaf | 
| 23 | make -j adall | 
| 24 |  | 
| 25 | To run the code: | 
| 26 | --------------- | 
| 27 | Currently: | 
| 28 | Need input parameter files from input_ad/ | 
| 29 | Need input fields from /nobackup2a/heimbach/ecco/arctic40km/data/input/ | 
| 30 |  | 
| 31 | Optimization/linesearch: | 
| 32 | ----------------------- | 
| 33 | T.B.D. | 
| 34 |  | 
| 35 | #################################################################### | 
| 36 |  | 
| 37 | Instructions for 10-year 1979-1988 arctic40km adjoint, on 15 procs | 
| 38 | last modified by D. Menemenlis (menemenlis@jpl.nasa.gov) on 07/03/06 | 
| 39 | -------------------------------------------------------------------- | 
| 40 | o cost terms are | 
| 41 | * theta/salt climatology (incl. annual cycle) | 
| 42 | * SST, SSS | 
| 43 | * daily seaice concentration | 
| 44 | (see code_ad/ECCO_CPPOPTIONS.h, | 
| 45 | input_ad/data.ecco, input_ad/data.seaice) | 
| 46 | o forward part has all kpp, gmredi, seaice, | 
| 47 | adjoint part has SEAICEuseDYNAMICS=.FALSE., see | 
| 48 | code_ad/autodiff_inadmode_set_ad.F | 
| 49 | code_ad/autodiff_inadmode_unset_ad.F | 
| 50 |  | 
| 51 | To get code: | 
| 52 | ------------ | 
| 53 | cvs co MITgcm_code | 
| 54 | cd MITgcm | 
| 55 | cvs co -d arctic40km MITgcm_contrib/arctic40km | 
| 56 | cd arctic40km/input_ad | 
| 57 | wget -nd -r -A"ICECONC*" http://channel.mit.edu/datasets/MITgcm_input_files/MITgcm_contrib/arctic40km/input | 
| 58 | wget -nd -r -A"*.bin" http://channel.mit.edu/datasets/MITgcm_input_files/MITgcm_contrib/arctic40km/input | 
| 59 | wget -nd -r -A"topog.bin_130_102" http://channel.mit.edu/datasets/MITgcm_input_files/MITgcm_contrib/arctic40km/input | 
| 60 | wget -nd -r -A"*.phc_130_102_25_12" http://channel.mit.edu/datasets/MITgcm_input_files/MITgcm_contrib/arctic40km/input | 
| 61 | cd ../.. | 
| 62 |  | 
| 63 | Also need to have "ncep_rgau" directory available at same level as MITgcm | 
| 64 | ncep_rgau files are available at http://ecco2.org/products/model_setups/ncep_rgau | 
| 65 | ------------------------------------------------------------------------- | 
| 66 |  | 
| 67 | To build code (on columbia): | 
| 68 | --------------------------- | 
| 69 | mkdir bin | 
| 70 | cd bin | 
| 71 | \rm * | 
| 72 | ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas -mods ../arctic40km/code_ad | 
| 73 | make depend | 
| 74 | make adtaf | 
| 75 | make -j adall | 
| 76 |  | 
| 77 | To run the code: | 
| 78 | --------------- | 
| 79 | cd .. | 
| 80 | \cp arctic40km/input_ad/runarctic.csh . | 
| 81 | qsub runarctic.csh |