/[MITgcm]/MITgcm_contrib/arctic/cs_18km/readme.txt
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revision 1.1 by dimitri, Tue Dec 24 01:29:03 2013 UTC revision 1.3 by dimitri, Mon Aug 10 18:54:21 2015 UTC
# Line 1  Line 1 
1    update input/data from run/input
2    copy run_template_cube81/runoff1p2472-360x180x12.bin to skylla
3    
4    DM 9-Jul-2015
5    Instructions for running the Nguyen et al 2011 configuration
6    with checkpoint65m (2015/06/15) on pleiades
7    
8    -> get a copy of ftp://ecco2.jpl.nasa.gov/data6/arctic/run_template_cube81
9       also available on pfe:/nobackup/dmenemen/arctic18km/run_template_cube81
10       and harbor.mit.edu:/net/nares/raid8/ecco-shared/arctic18km/run_template_cube81
11    
12    -> get a copy of ftp://ecco2.jpl.nasa.gov/data2/data/atmos/jra25
13       also available on pfe:/nobackup/hzhang1/forcing/jra25
14    
15    cvs co MITgcm_contrib/arctic/cs_18km
16    cvs co -r checkpoint65m MITgcm_code
17    cd MITgcm
18    mkdir build run
19    cd build
20    module purge
21    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.11r13 netcdf/4.0
22    ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas -mods ../../MITgcm_contrib/arctic/cs_18km/code
23    make depend
24    make -j 16
25    
26    cd ../run
27    cp ../../MITgcm_contrib/arctic/cs_18km/input/* .
28    rm data.obcs_*
29    ln -sf ../../run_template_cube81/*.bin .
30    ln -sf ../../run_template_cube81/BATHY_cube81_420x384_arctic .
31    ln -sf ../../run_template_cube81/WOA05_* .
32    ln -sf ../../run_template_cube81/*cube81 .
33    ln -sf ../../run_template_cube81/+ob1979_2014_merge/* .
34    ln -sf ../../jra25/jra25_*_199[1-9] .
35    ln -sf ../../jra25/jra25_*_2* .
36    rm jra25_rain_n*
37    ln -sf ../build/mitgcmuv .
38    qsub run_arctic_cs_18km_nas
39    
40    ===============
41    
42  ATN 23-Dec-2013  ATN 23-Dec-2013
43    
44  SEAICE_OPTIONS.h_atn_May2011: Paper: Nguyen et al 2011  SEAICE_OPTIONS.h_atn_May2011: Paper: Nguyen et al 2011
45    
46  CPP_OPTIONS.h_oldcode_before2012: code similar to what is used in Nguyen et al 2011, but compatible with codes around Sep2011  Cpp_OPTIONS.h_oldcode_before2012: code similar to what is used in Nguyen et al 2011, but compatible with codes around Sep2011
47  SEAICE_OPTIONS.h_Ian_Sep2011: Equivalence to above but updated to be compatible with Ian's code on that date  SEAICE_OPTIONS.h_Ian_Sep2011: Equivalence to above but updated to be compatible with Ian's code on that date
48    
49  After 2011, pkg/seaice has updated significantly with the merge of Ian's code into the main branch.  After 2011, pkg/seaice has updated significantly with the merge of Ian's code into the main branch.
# Line 15  CPP_OPTIONS.h_phAug2012 Line 56  CPP_OPTIONS.h_phAug2012
56  SEAICE_OPTIONS.h_phAug2012  SEAICE_OPTIONS.h_phAug2012
57    
58  To run this set up, use binary inputs from:  To run this set up, use binary inputs from:
59  http://ecco2.jpl.nasa.gov/data6/arctic/run_template_cube81/  ftp://ecco2.jpl.nasa.gov/data6/arctic/run_template_cube81/
60  obcs for the years 1979--2014:  +ob1979_2014_merge  obcs for the years 1979--2014:  +ob1979_2014_merge
61    
62  There are two bathymetries:  There are two bathymetries:
63  1) original from Nguyen et al 2011: BATHY_cube81_420x384_arctic  1) original from Nguyen et al 2011: BATHY_cube81_420x384_arctic
64  2) an updated version to blank out some CAA passages (set bathymetry to zero)  2) an updated version to blank out some CAA passages (set bathymetry to zero)
65    because 18km can not resolve these passages resutling in excessive sea ice thickness    because 18km can not resolve these passages resutling in excessive sea ice thickness
   
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