# Instructions for getting MITgcm code and data files
mkdir Arctic36km
cd Arctic36km
cvs co MITgcm_code
cvs co MITgcm_contrib/MPMice
cvs co MITgcm_contrib/arctic/cs_36km
ln -sf /homes/dmenemen/atmos/jra25 .
ln -sf /homes/dmenemen/Arctic36km/run_template .
mpd&

############

# Instructions for running uncoupled MITgcm
# arctic/cs_36km on spiral.math.unm.edu
cd MITgcm
mkdir bin exe
cd bin
\cp ../../MITgcm_contrib/arctic/cs_36km/code/* .
\cp ../../MITgcm_contrib/MPMice/arctic36km/code/SIZE.h .
../tools/genmake2 -mpi -of ../../MITgcm_contrib/MPMice/beaufort/code/linux_gfortran_spiral
make depend
make -j
cd ../exe
\ln -sf ../../jra25/* .
\ln -sf ../../run_template/* .
\cp ../../MITgcm_contrib/arctic/cs_36km/input/* .
\cp ../bin/mitgcmuv .
mpiexec -np 4 ./mitgcmuv < /dev/null &> output.txt &

######################

# Instructions for running coupled MPMice/MITgcm
# arctic/cs_36km on spiral.math.unm.edu
cd MITgcm
mkdir bin
cd bin
\rm *
\cp ../../MITgcm_contrib/MPMice/beaufort/code/* .
\cp ../../MITgcm_contrib/arctic/cs_36km/code/* .
\cp ../../MITgcm_contrib/MPMice/arctic36km/code/SIZE.h .
\mv CPP_EEOPTIONS.h_CPL CPP_EEOPTIONS.h
../tools/genmake2 -mpi -of ../../MITgcm_contrib/MPMice/beaufort/code/linux_gfortran_spiral
make depend
make -j
cd ..
mkdir ice
\cp /homes/hantran/fullArctic/MITgcm/ice/pm2geometry pm2input landmask .
\ln -sf /homes/hantran/2PM2/bin/PM2-Pre .
PM2-Pre
cd ..
\ln -sf /homes/hantran/2PM2/bin/PM2 .
mkdir ocean
cd ocean
\rm *
\ln -sf ../../jra25/* .
\ln -sf ../../run_template/* .
\cp ../../MITgcm_contrib/arctic/cs_36km/input/* .
cd ..
\ln -sf bin/mitgcmuv .
mpiexec -np 4 mitgcmuv : -np 1 PM2