/[MITgcm]/MITgcm_contrib/LCML/cpl_aim+ocn/README
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revision 1.1 by ce107, Wed Oct 17 21:46:26 2007 UTC revision 1.2 by ce107, Sun Oct 21 18:19:34 2007 UTC
# Line 1  Line 1 
1    *****VERY IMPORTANT*****
2    The setbuildenv and setrunenv files need to be in the users' home
3    directory. They need to be modified for other compilers/libraries.
4    Eventually LEGEND will prepare them as well.
5    
6    Load up Legend
7    
8    Go to File->Open, put in
9    /net/lagoon/scratch2/ce107/MITgcm_contrib/LCML/cpl_aim+ocn
10    or whereever you have untared/cvs co-ed the root directory
11    and choose cpl_aim+ocn.xml
12    
13  To build the code:  To build the code:
14    
15  A) Go to the top level menu and  A) Go to the top level menu and
# Line 8  B) Go deep into the Atmosphere build men Line 20  B) Go deep into the Atmosphere build men
20  1) set the choices for package, options etc in every case.  1) set the choices for package, options etc in every case.
21  2) save the file in every case  2) save the file in every case
22    
23  C) Configure the Atmosphere genmake2 menu and run genmake2  C) Configure the Atmosphere genmake2 menu and run genmake2. This takes
24    a while.
25    
26  D) Go up to the Atmosphere build menu, decide on the variables and  D) Go up to the Atmosphere build menu, decide on the variables and
27  run the script  run the script
# Line 20  E) Go deep into the Ocean build menu and Line 33  E) Go deep into the Ocean build menu and
33  F) Configure the Ocean genmake2 menu and run genmake2  F) Configure the Ocean genmake2 menu and run genmake2
34    
35  G) Go up to the Ocean build menu, decide on the variables and  G) Go up to the Ocean build menu, decide on the variables and
36  run the script  run the script. This takes a while.
37    
38  B) Go deep into the Coupler build menu and  B) Go deep into the Coupler build menu and
39  1) set the choices for Parameters in every case.  1) set the choices for Parameters in every case.
# Line 28  B) Go deep into the Coupler build menu a Line 41  B) Go deep into the Coupler build menu a
41    
42  C) Configure the Coupler genmake2 menu and run genmake2  C) Configure the Coupler genmake2 menu and run genmake2
43    
44  D) Go up to the Atmosphere Coupler menu, decide on the variables and  D) Go up to the Coupler build menu, decide on the variables and
45  run the script  run the script. This doesn't take too long.
46    
47  To run the code:  To run the code:
48    
49  A) Go deep into each menu and edit the data parameter files. Save them.  A) Go deep into each menu and edit the data and execution parameter
50    files. Save them in the respective directories (savedirs) that you
51    sent in the top menu.
52    
53    *****VERY IMPORTANT*****
54    To retrieve values that work for this setup you can either import each
55    file's exported values (the names are self explanatory) or import a
56    top to bottom export for the runtime called
57    exportFromCpl_aim+ocn_runtime.xml
58    
59  B) To to the top runtime menu, edit the options and run the script.  B) Go to the runtime menu for each component and run the script to
60    prepare the run directories
61    
62    C) To to the top runtime menu, edit the options if necessary and run
63    the script.
64    
65  LEGEND current faux-pass:  LEGEND current faux-pass:
66  a) Do not forget to remove the default PBS monitor from the options under Tools.  a) LEGEND is temperamental as of late. It seems to be far less so with
67    IBM java than with Sun Java so on batsi.mit.edu for example use module
68    add jdk/ibm/1.5.0
69    java -jar Legend.jar
70    etc.
71    Available modules on batsi are seen as always by
72    module avail
73    b) If you do not want to see PBS output that makes no sense do not
74    forget to remove the default PBS monitor from the options under
75    Tools. On the other hand this way you get a nice popup when an action
76    finishes unlike the standard case when you have to look for any
77    output.  
78    c) You can always edit a script before execution in the window it
79    appears in; Sun Java sometimes gets horribly worked up over it and
80    LEGEND needs to be killed.  
81    d) After an import the visual on the use box for a structure becomes
82    unticked even though it is actually true. The file output is correct
83    but the table display is misleading.
84    
85    
86    
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