| 1 |
#!/bin/csh -f |
#!/bin/sh |
| 2 |
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| 3 |
# Run this script from the verification directory |
compare_lines() |
| 4 |
# It will automatically configure, compile, run and verify all experiments |
{ |
| 5 |
# in the verification directory for whcih there is an results/output.txt |
# use codelet to compare lines |
| 6 |
# file. |
if [ $verbose -gt 1 ]; then |
| 7 |
|
cat tmp3.txt 1>&2 |
| 8 |
# This is the number of least-significant digits allows to be |
fi |
| 9 |
# in error before the test is classified as a "fail". |
return `./a.out < tmp3.txt` |
| 10 |
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} |
| 11 |
set on_error_die |
|
| 12 |
set passaccuracy=7 |
testoutput_for_prop() |
| 13 |
set SKIP=( ) |
{ |
| 14 |
printf '%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n' " " Make " " " " Exact "# of" " " " " > summary.txt |
# testoutput_for_prop dir s1 label |
| 15 |
printf '%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n' Config Depend Compile Execute Match Digits Status Experiment >> summary.txt |
# |
| 16 |
|
# compares files in $dir/input/output.txt and $dir/results.output.txt |
| 17 |
# Pass any arguments |
# using search strings s1 and text label |
| 18 |
foreach arg ($argv) |
|
| 19 |
switch ($arg) |
if [ $debug -gt 0 ]; then |
| 20 |
case -clean: |
echo testoutput_for_prop: grep "$2" $1/input/output.txt 1>&2 |
| 21 |
echo Cleaning ... |
fi |
| 22 |
foreach dr ([a-zA-Z01-9]*) |
if [ -r $1/input/output.txt ]; then |
| 23 |
if (-d $dr/input) then |
grep "$2" $1/input/output.txt | sed 's/.*=//' | nl > tmp1.txt |
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echo Entering $dr |
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cd $dr/input |
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echo "" |
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make CLEAN |
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\rm -f {*output,*high,*low}.txt *.log |
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\rm -f ?ake* |
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cd ../.. |
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endif |
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end |
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rm -f summary.txt |
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exit 0 |
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breaksw |
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case -nodie: |
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unset on_error_die |
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breaksw |
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case -skip=*: |
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set SKIP = ( $SKIP `echo $arg | sed 's/-skip=//' | sed 's/,/ /g' `) |
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breaksw |
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default: |
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echo Unknown argument given to $0 |
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exit 1 |
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endsw |
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end |
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foreach dr ([a-zA-Z01-9]*) |
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if (! -d $dr/input ) continue |
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foreach skip ($SKIP) |
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if ( `echo $dr | sed s/$skip.'*'//` == '' ) continue;continue |
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end |
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set config=- |
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set makedepend=- |
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set compile=- |
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set execute=- |
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set exactmatch=- |
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set accuracy=- |
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set pass=FAIL |
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echo ============================================================================== |
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echo Entering $dr |
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cd $dr |
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echo "" |
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if (! -r results/output.txt) then |
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echo " ***** No results to compare with *****" |
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if (! $?untested) set untested |
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set untested=($untested $dr) |
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| 24 |
else |
else |
| 25 |
set config=NO |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
| 26 |
cd input |
return 99 |
| 27 |
echo -n " generating Makefile ..." |
fi |
| 28 |
../../../tools/genmake -mods=../code >&! make.log |
if [ $debug -gt 0 ]; then |
| 29 |
if ($status == 0) set config=Yes |
echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
| 30 |
set makedepend=NO |
fi |
| 31 |
echo " done." |
grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
| 32 |
echo -n " make depend ..." |
if [ $debug -gt 0 ]; then |
| 33 |
make cleanlinks depend >>& make.log |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
| 34 |
if ($status == 0) set makedepend=Yes |
fi |
| 35 |
echo " done." |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
| 36 |
echo -n " make ..." |
if [ $debug -gt 0 ]; then |
| 37 |
make >>& make.log |
echo testoutput_for_prop: compare_lines 1>&2 |
| 38 |
if ($status) then |
fi |
| 39 |
echo " ***** An error occurred during make *****" |
compare_lines |
| 40 |
cat make.log |
digits_of_similarity=$? |
| 41 |
echo The error during compilation occured in \"$dr\" |
if [ $digits_of_similarity -eq 99 ]; then |
| 42 |
set compile=NO |
if [ $verbose -gt 0 ]; then |
| 43 |
if ($?on_error_die) exit 1 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
| 44 |
else |
fi |
| 45 |
set compile=Yes |
digits_of_similarity=99 |
| 46 |
set execute=NO |
else |
| 47 |
endif |
if [ $verbose -gt 0 ]; then |
| 48 |
echo " done." |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
| 49 |
echo -n " running model ..." |
fi |
| 50 |
if ($compile == 'Yes') then |
fi |
| 51 |
# ./mitgcmuv | & grep "D iters" > output.txt |
rm tmp1.txt tmp2.txt tmp3.txt |
| 52 |
./mitgcmuv > & output.txt |
|
| 53 |
if ($status == 0) then |
return $digits_of_similarity |
| 54 |
set execute=Yes |
} |
| 55 |
set exactmatch=NO |
|
| 56 |
set accuracy=- |
dashnum() |
| 57 |
echo " done." |
{ |
| 58 |
grep "D iters" output.txt | sed 's/.*D iters, err =//' \ |
# dashnum n1 n2 n3 ... |
| 59 |
| grep " 0 " \ |
# |
| 60 |
> high.txt |
# print numbers using %3i format or "--" if number = 99 |
| 61 |
grep "D iters" ../results/output.txt \ |
for num in $@ |
| 62 |
| sed 's/.*D iters, err =//' \ |
do |
| 63 |
| grep " 0 " \ |
if [ $num = 99 ]; then |
| 64 |
> oldhigh.txt |
printf ' --' |
| 65 |
diff oldhigh.txt high.txt > /dev/null |
else |
| 66 |
if ($status) then |
printf '%3i' $num |
| 67 |
echo " output differs:" |
fi |
| 68 |
diff oldhigh.txt high.txt |
done |
| 69 |
echo "" |
} |
| 70 |
@ lvl=0 |
|
| 71 |
set accuracy='.' |
testoutput() |
| 72 |
set fail |
{ |
| 73 |
echo -n Trying reduced accuracy |
# testoutput diretory |
| 74 |
while ($lvl <= $passaccuracy) |
# |
| 75 |
@ lvl+=1 |
# test output in "directory" |
| 76 |
echo -n " " $lvl |
|
| 77 |
sed s/{$accuracy}E/E/ high.txt > low.txt |
if [ $debug -gt 0 ]; then |
| 78 |
sed s/{$accuracy}E/E/ oldhigh.txt > oldlow.txt |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
| 79 |
diff oldlow.txt low.txt > /dev/null |
fi |
| 80 |
if ($status == 0) then |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual"; cg2dres=$? |
| 81 |
unset fail |
if [ $debug -gt 0 ]; then |
| 82 |
break |
echo testoutput: cg2dres=$cg2dres 1>&2 |
| 83 |
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fi |
| 84 |
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| 85 |
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if [ $testmore -gt 0 ]; then |
| 86 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum"; tmin=$? |
| 87 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum"; tmax=$? |
| 88 |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean"; tmean=$? |
| 89 |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d."; tsd=$? |
| 90 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum"; smin=$? |
| 91 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum"; smax=$? |
| 92 |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean"; smean=$? |
| 93 |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d."; ssd=$? |
| 94 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum"; umin=$? |
| 95 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum"; umax=$? |
| 96 |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean"; umean=$? |
| 97 |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d."; usd=$? |
| 98 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum"; vmin=$? |
| 99 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum"; vmax=$? |
| 100 |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean"; vmean=$? |
| 101 |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d."; vsd=$? |
| 102 |
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else |
| 103 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum"; tmin=$? |
| 104 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum"; tmax=$? |
| 105 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum"; smin=$? |
| 106 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum"; smax=$? |
| 107 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum"; umin=$? |
| 108 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum"; umax=$? |
| 109 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum"; vmin=$? |
| 110 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum"; vmax=$? |
| 111 |
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fi |
| 112 |
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| 113 |
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dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
| 114 |
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$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
| 115 |
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#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
| 116 |
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# $umin $umax $umean $usd $vmin $vmax $vmean $vsd |
| 117 |
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} |
| 118 |
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| 119 |
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genmakemodel() |
| 120 |
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{ |
| 121 |
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# genmakemodel directory |
| 122 |
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( cd $1; |
| 123 |
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
| 124 |
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printf 'genmake ... ' 1>&2 |
| 125 |
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../../../tools/genmake -ieee -mods=../code > make.log 2>&1 |
| 126 |
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if [ $? -ne 0 ]; then |
| 127 |
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tail make.log |
| 128 |
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echo makemodel: genmake failed 1>&2 |
| 129 |
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return 1 |
| 130 |
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else |
| 131 |
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echo succesful 1>&2 |
| 132 |
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fi |
| 133 |
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fi |
| 134 |
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) |
| 135 |
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} |
| 136 |
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| 137 |
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makedependmodel() |
| 138 |
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{ |
| 139 |
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# makedependmodel directory |
| 140 |
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( cd $1; |
| 141 |
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
| 142 |
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printf 'make depend ... ' 1>&2 |
| 143 |
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make cleanlinks >> make.log 2>&1 |
| 144 |
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make depend >> make.log 2>&1 |
| 145 |
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if [ $? -ne 0 ]; then |
| 146 |
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tail make.log |
| 147 |
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echo makemodel: make depend failed 1>&2 |
| 148 |
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return 1 |
| 149 |
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else |
| 150 |
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echo succesful 1>&2 |
| 151 |
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fi |
| 152 |
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fi |
| 153 |
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) |
| 154 |
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} |
| 155 |
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| 156 |
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makemodel() |
| 157 |
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{ |
| 158 |
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# makemodel directory |
| 159 |
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( cd $1; |
| 160 |
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if [ -r Makefile ]; then |
| 161 |
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printf 'make ... ' 1>&2 |
| 162 |
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make >> make.log 2>&1 |
| 163 |
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if [ $? -ne 0 ]; then |
| 164 |
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tail make.log |
| 165 |
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echo failed 1>&2 |
| 166 |
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return 1 |
| 167 |
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else |
| 168 |
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echo succesful 1>&2 |
| 169 |
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fi |
| 170 |
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fi |
| 171 |
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) |
| 172 |
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} |
| 173 |
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|
| 174 |
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runmodel() |
| 175 |
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{ |
| 176 |
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# runmodel directory exe |
| 177 |
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# |
| 178 |
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# runs the model "exe" in "directory" (exe is relative to directory) |
| 179 |
|
|
| 180 |
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( cd $1 |
| 181 |
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if [ -x $2 ]; then |
| 182 |
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if [ ! -r output.txt -o $quick -eq 0 ]; then |
| 183 |
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echo runmodel: running... 1>&2 |
| 184 |
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( ./$2 > output.txt 2>&1 ) && return 0 |
| 185 |
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return 1 |
| 186 |
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else |
| 187 |
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echo runmodel: output.txt is newer than executable 1>&2 |
| 188 |
|
return 0 |
| 189 |
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fi |
| 190 |
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else |
| 191 |
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echo runmodel: executable \"$1/$2\" is missing 1>&2 |
| 192 |
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return 1 |
| 193 |
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fi |
| 194 |
|
) |
| 195 |
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} |
| 196 |
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|
| 197 |
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createcodelet() |
| 198 |
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{ |
| 199 |
|
# create codelet for comparing model output |
| 200 |
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cat > tmp_cmpnum.f <<EOFA |
| 201 |
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program cmpnum |
| 202 |
|
implicit none |
| 203 |
|
real*8 a,b,diff |
| 204 |
|
integer linnum,best |
| 205 |
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best=-16 |
| 206 |
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99 read(*,*,end=70,err=60) linnum,a,b |
| 207 |
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diff=0.5*(abs(a)+abs(b)) |
| 208 |
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c print *,a,b,diff,abs(a-b)/diff |
| 209 |
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if (diff.gt.1.e-12) then |
| 210 |
|
diff=abs(a-b)/diff |
| 211 |
|
if (diff.gt.0.) then |
| 212 |
|
c print *,int(log10(diff)),diff |
| 213 |
|
linnum=int(log10(diff)) |
| 214 |
|
best=max(best,linnum) |
| 215 |
endif |
endif |
|
set accuracy=`echo $accuracy | sed 's/\./../'` |
|
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end |
|
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echo "" |
|
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if ($?fail ) then |
|
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if (! $?fails) set fails |
|
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set fails=($fails $dr) |
|
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set pass=FAIL |
|
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echo " ***** FAIL *****" |
|
| 216 |
else |
else |
| 217 |
if (! $?passes) set passes |
if (best.eq.-16.and.diff.ne.0.) best=-22 |
|
set passes=($passes $dr) |
|
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set pass=Pass |
|
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echo "" |
|
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echo " ***** PASS (grade $lvl) *****" |
|
| 218 |
endif |
endif |
| 219 |
set accuracy=$lvl |
goto 99 |
| 220 |
else |
60 stop 'cmpnum: An error occured reading a,b' |
| 221 |
set exactmatch=Yes |
70 print *,-best |
| 222 |
set pass=Pass |
end |
| 223 |
echo "" |
EOFA |
| 224 |
echo Model passed at highest accuracy. |
f77 tmp_cmpnum.f |
| 225 |
echo "" |
if [ -x ./a.out ]; then |
| 226 |
echo " ***** PASS *****" |
return 0 |
| 227 |
if (! $?passes) set passes |
else |
| 228 |
set passes=($passes $dr) |
echo createcodelet: failed to compile codelet 1>&2 |
| 229 |
endif |
exit 1 |
| 230 |
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fi |
| 231 |
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} |
| 232 |
|
|
| 233 |
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formatresults() |
| 234 |
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{ |
| 235 |
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# formatresults expt genmake depend make run results* |
| 236 |
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|
| 237 |
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nm=$1 |
| 238 |
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printf '%s %s %s %s' $2 $3 $4 $5 |
| 239 |
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shift; shift; shift; shift; shift; |
| 240 |
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printf '%3s' $@ |
| 241 |
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|
| 242 |
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if [ $1 = '--' ]; then |
| 243 |
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printf ' N/O ' |
| 244 |
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else |
| 245 |
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if [ $1 -gt 12 ]; then |
| 246 |
|
printf ' pass' |
| 247 |
else |
else |
| 248 |
echo " error" |
printf ' FAIL' |
| 249 |
echo " ***** An error occured running the model *****" |
fi |
| 250 |
tail output.txt |
fi |
| 251 |
echo The runtime error occured in \"$dr\" |
printf ' %s' $nm |
| 252 |
if ($?on_error_die) exit 1 |
printf '\n' |
| 253 |
set pass=- |
|
| 254 |
endif |
} |
| 255 |
rm -f high.txt oldhigh.txt low.txt oldlow.txt output.txt make.log |
|
| 256 |
endif |
show_help() |
| 257 |
cd .. |
{ |
| 258 |
endif |
cat - << EOF |
| 259 |
echo "" |
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
| 260 |
cd .. |
-help Show this help message |
| 261 |
# Pretty summary |
-quick Skip "genmake" and "make depend" if the Makefile exists |
| 262 |
printresults: |
-quiet Reduce the amount of output |
| 263 |
printf ' %s\t %s\t %s\t %s\t %s\t %s\t %s\t%s\n' $config $makedepend $compile $execute $exactmatch $accuracy $pass $dr >> summary.txt |
-verbose Produce copious amounts of output |
| 264 |
end |
|
| 265 |
echo ============================================================================== |
Normal usage: |
| 266 |
echo "" |
$0 * Configure, compile, run and analyze in all experiment directories |
| 267 |
|
EOF |
| 268 |
|
} |
| 269 |
|
|
| 270 |
|
############################################################################### |
| 271 |
|
|
| 272 |
|
# Main function |
| 273 |
|
|
| 274 |
|
# Default properties |
| 275 |
|
debug=0 |
| 276 |
|
verbose=1 |
| 277 |
|
quick=0 |
| 278 |
|
testmore=0 |
| 279 |
|
expts='' |
| 280 |
|
|
| 281 |
|
# Process arguments |
| 282 |
|
for arg in $@ |
| 283 |
|
do |
| 284 |
|
case $arg in |
| 285 |
|
-quick) quick=1;; |
| 286 |
|
-verbose) verbose=2;; |
| 287 |
|
-debug) debug=1;; |
| 288 |
|
-testmore) testmore=1;; |
| 289 |
|
-quiet) verbose=0;; |
| 290 |
|
-help) show_help; exit 0;; |
| 291 |
|
*) test -d $arg && expts=`echo $expts $arg`;; |
| 292 |
|
esac |
| 293 |
|
done |
| 294 |
|
|
| 295 |
|
if [ ${#expts} -eq 0 ]; then |
| 296 |
|
echo Scanning all directories |
| 297 |
|
for arg in * |
| 298 |
|
do |
| 299 |
|
test -d $arg && expts=`echo $expts $arg` |
| 300 |
|
done |
| 301 |
|
fi |
| 302 |
|
|
| 303 |
|
createcodelet |
| 304 |
|
|
| 305 |
|
if [ $testmore -gt 0 ]; then |
| 306 |
|
cat << EOF > summary.txt |
| 307 |
|
T S U V |
| 308 |
|
C D M c m s m s m s m s |
| 309 |
|
n p a R g m m e . m m e . m m e . m m e . |
| 310 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
| 311 |
|
g d e n d n x n . n x n . n x n . n x n . |
| 312 |
|
|
| 313 |
|
EOF |
| 314 |
|
else |
| 315 |
|
cat << EOF > summary.txt |
| 316 |
|
T S U V |
| 317 |
|
C D M c |
| 318 |
|
n p a R g m m m m m m m m |
| 319 |
|
f n k u 2 i a i a i a i a |
| 320 |
|
g d e n d n x n x n x n x |
| 321 |
|
|
| 322 |
|
EOF |
| 323 |
|
fi |
| 324 |
|
|
| 325 |
|
# Now configue, make, run and test in each directory |
| 326 |
|
for dir in $expts |
| 327 |
|
do |
| 328 |
|
if [ -r $dir/results/output.txt ]; then |
| 329 |
|
echo ------------------------------------------------------------------------------- |
| 330 |
|
echo |
| 331 |
|
echo Experiment: $dir |
| 332 |
|
echo |
| 333 |
|
unset genmake makedepend make run |
| 334 |
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
| 335 |
|
results='-- -- -- -- -- -- -- -- --' |
| 336 |
|
genmakemodel $dir/input && genmake=Y \ |
| 337 |
|
&& makedependmodel $dir/input && makedepend=Y \ |
| 338 |
|
&& makemodel $dir/input && make=Y \ |
| 339 |
|
&& runmodel $dir/input mitgcmuv && run=Y \ |
| 340 |
|
&& results=`testoutput $dir` |
| 341 |
|
echo |
| 342 |
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results |
| 343 |
|
echo |
| 344 |
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt |
| 345 |
|
fi |
| 346 |
|
done |
| 347 |
|
|
| 348 |
|
rm tmp_cmpnum.f a.out |
| 349 |
|
|
| 350 |
echo "Summary:" |
echo ------------------------------------------------------------------------------- |
| 351 |
echo "" |
echo |
| 352 |
cat summary.txt |
cat summary.txt |
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