1 |
#!/bin/csh |
#!/bin/sh |
2 |
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# Run this script from the verification directory |
compare_lines() |
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# It will automatically configure, compile, run and verify all experiments |
{ |
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# in the verification directory for whcih there is an results/output.txt |
# use codelet to compare lines |
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# file. |
if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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# This is the number of least-significant digits allows to be |
fi |
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# in error before the test is classified as a "fail". |
return `./a.out < tmp3.txt` |
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} |
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set on_error_die |
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set passaccuracy=7 |
testoutput_for_prop() |
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set SKIP=( ) |
{ |
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printf '%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n' " " Make " " " " Exact "# of" " " " " > summary.txt |
# testoutput_for_prop dir s1 label |
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printf '%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n' Config Depend Compile Execute Match Digits Status Experiment >> summary.txt |
# |
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# compares files in $dir/input/output.txt and $dir/results.output.txt |
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# Pass any arguments |
# using search strings s1 and text label |
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foreach arg ($argv) |
|
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switch ($arg) |
if [ $debug -gt 0 ]; then |
20 |
case -clean: |
echo testoutput_for_prop: grep "$2" $1/input/output.txt 1>&2 |
21 |
echo Cleaning ... |
fi |
22 |
foreach dr ([a-zA-Z01-9]*) |
if [ -r $1/input/output.txt ]; then |
23 |
if (-d $dr/input) then |
grep "$2" $1/input/output.txt | sed 's/.*=//' | nl > tmp1.txt |
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echo Entering $dr |
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cd $dr/input |
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echo "" |
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make CLEAN |
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\rm -f {*output,*high,*low}.txt *.log |
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\rm -f ?ake* |
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cd ../.. |
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endif |
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end |
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rm -f summary.txt |
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exit 0 |
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breaksw |
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case -nodie: |
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unset on_error_die |
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breaksw |
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case -skip=*: |
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set SKIP = ( $SKIP `echo $arg | sed 's/-skip=//' | sed 's/,/ /g' `) |
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breaksw |
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default: |
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echo Unknown argument given to $0 |
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exit 1 |
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endsw |
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end |
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foreach dr ([a-zA-Z01-9]*) |
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if (! -d $dr/input ) continue |
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foreach skip ($SKIP) |
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if ($skip == $dr) continue;continue |
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end |
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set config=- |
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set makedepend=- |
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set compile=- |
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set execute=- |
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set exactmatch=- |
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set accuracy=- |
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set pass=FAIL |
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echo ============================================================================== |
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echo Entering $dr |
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cd $dr |
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echo "" |
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if (! -r results/output.txt) then |
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echo " ***** No results to compare with *****" |
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if (! $?untested) set untested |
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set untested=($untested $dr) |
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24 |
else |
else |
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set config=NO |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
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cd input |
return 99 |
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echo -n " generating Makefile ..." |
fi |
28 |
../../../tools/genmake -mods=../code >&! make.log |
if [ $debug -gt 0 ]; then |
29 |
if ($status == 0) set config=Yes |
echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
30 |
set makedepend=NO |
fi |
31 |
echo " done." |
grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
32 |
echo -n " make depend ..." |
if [ $debug -gt 0 ]; then |
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make cleanlinks depend >>& make.log |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
34 |
if ($status == 0) set makedepend=Yes |
fi |
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echo " done." |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
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echo -n " make ..." |
if [ $debug -gt 0 ]; then |
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make >>& make.log |
echo testoutput_for_prop: compare_lines 1>&2 |
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if ($status) then |
fi |
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echo " ***** An error occurred during make *****" |
compare_lines |
40 |
cat make.log |
digits_of_similarity=$? |
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echo The error during compilation occured in \"$dr\" |
if [ $digits_of_similarity -eq 99 ]; then |
42 |
set compile=NO |
if [ $verbose -gt 0 ]; then |
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if ($?on_error_die) exit 1 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
44 |
else |
fi |
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set compile=Yes |
digits_of_similarity=99 |
46 |
set execute=NO |
else |
47 |
endif |
if [ $verbose -gt 0 ]; then |
48 |
echo " done." |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
49 |
echo -n " running model ..." |
fi |
50 |
if ($compile == 'Yes') then |
fi |
51 |
# ./mitgcmuv | & grep "D iters" > output.txt |
rm tmp1.txt tmp2.txt tmp3.txt |
52 |
./mitgcmuv > & output.txt |
|
53 |
if ($status == 0) then |
return $digits_of_similarity |
54 |
set execute=Yes |
} |
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set exactmatch=NO |
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56 |
set accuracy=- |
dashnum() |
57 |
echo " done." |
{ |
58 |
grep "D iters" output.txt | sed 's/.*D iters, err =//' \ |
# dashnum n1 n2 n3 ... |
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| grep " 0 " \ |
# |
60 |
> high.txt |
# print numbers using %3i format or "--" if number = 99 |
61 |
grep "D iters" ../results/output.txt \ |
for num in $@ |
62 |
| sed 's/.*D iters, err =//' \ |
do |
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| grep " 0 " \ |
if [ $num = 99 ]; then |
64 |
> oldhigh.txt |
printf ' --' |
65 |
diff oldhigh.txt high.txt > /dev/null |
else |
66 |
if ($status) then |
printf '%3i' $num |
67 |
echo " output differs:" |
fi |
68 |
diff oldhigh.txt high.txt |
done |
69 |
echo "" |
} |
70 |
@ lvl=0 |
|
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set accuracy='.' |
testoutput() |
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set fail |
{ |
73 |
echo -n Trying reduced accuracy |
# testoutput diretory |
74 |
while ($lvl <= $passaccuracy) |
# |
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@ lvl+=1 |
# test output in "directory" |
76 |
echo -n " " $lvl |
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sed s/{$accuracy}E/E/ high.txt > low.txt |
if [ $debug -gt 0 ]; then |
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sed s/{$accuracy}E/E/ oldhigh.txt > oldlow.txt |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
79 |
diff oldlow.txt low.txt > /dev/null |
fi |
80 |
if ($status == 0) then |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual"; cg2dres=$? |
81 |
unset fail |
if [ $debug -gt 0 ]; then |
82 |
break |
echo testoutput: cg2dres=$cg2dres 1>&2 |
83 |
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fi |
84 |
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85 |
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if [ $longtest -gt 0 ]; then |
86 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum"; tmin=$? |
87 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum"; tmax=$? |
88 |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean"; tmean=$? |
89 |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d."; tsd=$? |
90 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum"; smin=$? |
91 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum"; smax=$? |
92 |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean"; smean=$? |
93 |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d."; ssd=$? |
94 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum"; umin=$? |
95 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum"; umax=$? |
96 |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean"; umean=$? |
97 |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d."; usd=$? |
98 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum"; vmin=$? |
99 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum"; vmax=$? |
100 |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean"; vmean=$? |
101 |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d."; vsd=$? |
102 |
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else |
103 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum"; tmin=$? |
104 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum"; tmax=$? |
105 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum"; smin=$? |
106 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum"; smax=$? |
107 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum"; umin=$? |
108 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum"; umax=$? |
109 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum"; vmin=$? |
110 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum"; vmax=$? |
111 |
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fi |
112 |
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113 |
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dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
114 |
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$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
115 |
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#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
116 |
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# $umin $umax $umean $usd $vmin $vmax $vmean $vsd |
117 |
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} |
118 |
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119 |
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genmakemodel() |
120 |
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{ |
121 |
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# genmakemodel directory |
122 |
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( cd $1; |
123 |
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
124 |
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printf 'genmake ... ' 1>&2 |
125 |
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if [ $ieee -eq 0 ]; then |
126 |
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../../../tools/genmake -mods=../code > make.log 2>&1 |
127 |
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else |
128 |
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../../../tools/genmake -ieee -mods=../code > make.log 2>&1 |
129 |
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fi |
130 |
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if [ $? -ne 0 ]; then |
131 |
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tail make.log |
132 |
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echo genmakemodel: genmake failed 1>&2 |
133 |
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return 1 |
134 |
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else |
135 |
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echo succesful 1>&2 |
136 |
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fi |
137 |
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fi |
138 |
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) |
139 |
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} |
140 |
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141 |
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makecleancompile() |
142 |
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{ |
143 |
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# makecleancompile directory |
144 |
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( cd $1; |
145 |
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if [ $force -gt 0 ]; then |
146 |
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rm -f output.txt |
147 |
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printf 'make clean ... ' 2>&1 |
148 |
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make CLEAN >> make.log 2>&1 |
149 |
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if [ $? -ne 0 ]; then |
150 |
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tail make.log |
151 |
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echo makecleancompile: make clean failed 1>&2 |
152 |
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return 1 |
153 |
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else |
154 |
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echo succesful 1>&2 |
155 |
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fi |
156 |
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fi |
157 |
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) |
158 |
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} |
159 |
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160 |
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makecleanupafter() |
161 |
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{ |
162 |
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# makeupafter directory |
163 |
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( cd $1; |
164 |
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if [ $clean -gt 0 ]; then |
165 |
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rm -f output.txt |
166 |
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printf 'make clean ... ' 2>&1 |
167 |
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make CLEAN >> make.log 2>&1 |
168 |
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if [ $? -ne 0 ]; then |
169 |
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tail make.log |
170 |
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echo makeupafter: make clean failed 1>&2 |
171 |
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return 1 |
172 |
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else |
173 |
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echo succesful 1>&2 |
174 |
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fi |
175 |
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fi |
176 |
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) |
177 |
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} |
178 |
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179 |
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makedependmodel() |
180 |
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{ |
181 |
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# makedependmodel directory |
182 |
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( cd $1; |
183 |
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
184 |
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printf 'make depend ... ' 1>&2 |
185 |
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make cleanlinks >> make.log 2>&1 |
186 |
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make depend >> make.log 2>&1 |
187 |
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if [ $? -ne 0 ]; then |
188 |
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tail make.log |
189 |
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echo makemodel: make depend failed 1>&2 |
190 |
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return 1 |
191 |
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else |
192 |
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echo succesful 1>&2 |
193 |
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fi |
194 |
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fi |
195 |
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) |
196 |
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} |
197 |
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198 |
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makemodel() |
199 |
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{ |
200 |
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# makemodel directory |
201 |
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( cd $1; |
202 |
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if [ -r Makefile ]; then |
203 |
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printf 'make ... ' 1>&2 |
204 |
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make >> make.log 2>&1 |
205 |
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if [ $? -ne 0 ]; then |
206 |
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tail make.log |
207 |
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echo failed 1>&2 |
208 |
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return 1 |
209 |
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else |
210 |
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echo succesful 1>&2 |
211 |
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fi |
212 |
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fi |
213 |
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) |
214 |
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} |
215 |
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216 |
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runmodel() |
217 |
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{ |
218 |
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# runmodel directory exe |
219 |
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# |
220 |
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# runs the model "exe" in "directory" (exe is relative to directory) |
221 |
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|
222 |
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( cd $1 |
223 |
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if [ -x $2 ]; then |
224 |
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if [ $quick -eq 0 ]; then |
225 |
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rm -f output.txt |
226 |
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fi |
227 |
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echo -n "runmodel: " 1>&2 |
228 |
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make output.txt && return 0 |
229 |
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# if [ ! -r output.txt -o $quick -eq 0 ]; then |
230 |
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# echo runmodel: running... 1>&2 |
231 |
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# ( ./$2 > output.txt 2>&1 ) && return 0 |
232 |
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# rm -f output.txt |
233 |
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# ( make output.txt ) && return 0 |
234 |
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# return 1 |
235 |
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# else |
236 |
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# echo runmodel: output.txt is newer than executable 1>&2 |
237 |
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# ( make output.txt ) && return 0 |
238 |
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# return 0 |
239 |
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# fi |
240 |
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# else |
241 |
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# echo runmodel: executable \"$1/$2\" is missing 1>&2 |
242 |
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# return 1 |
243 |
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fi |
244 |
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) |
245 |
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} |
246 |
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|
247 |
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createcodelet() |
248 |
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{ |
249 |
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# create codelet for comparing model output |
250 |
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cat > tmp_cmpnum.f <<EOFA |
251 |
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program cmpnum |
252 |
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implicit none |
253 |
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real*8 a,b,diff |
254 |
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integer linnum,best |
255 |
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best=-16 |
256 |
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99 read(*,*,end=70,err=60) linnum,a,b |
257 |
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diff=0.5*(abs(a)+abs(b)) |
258 |
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c print *,a,b,diff,abs(a-b)/diff |
259 |
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if (diff.gt.1.e-12) then |
260 |
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diff=abs(a-b)/diff |
261 |
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if (diff.gt.0.) then |
262 |
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c print *,int(log10(diff)),diff |
263 |
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linnum=int(log10(diff)) |
264 |
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best=max(best,linnum) |
265 |
endif |
endif |
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set accuracy=`echo $accuracy | sed 's/\./../'` |
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end |
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echo "" |
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if ($?fail ) then |
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if (! $?fails) set fails |
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set fails=($fails $dr) |
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set pass=FAIL |
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echo " ***** FAIL *****" |
|
266 |
else |
else |
267 |
if (! $?passes) set passes |
if (best.eq.-16.and.diff.ne.0.) best=-22 |
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set passes=($passes $dr) |
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set pass=Pass |
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echo "" |
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echo " ***** PASS (grade $lvl) *****" |
|
268 |
endif |
endif |
269 |
set accuracy=$lvl |
goto 99 |
270 |
else |
60 stop 'cmpnum: An error occured reading a,b' |
271 |
set exactmatch=Yes |
70 print *,-best |
272 |
set pass=Pass |
end |
273 |
echo "" |
EOFA |
274 |
echo Model passed at highest accuracy. |
f77 tmp_cmpnum.f |
275 |
echo "" |
if [ -x ./a.out ]; then |
276 |
echo " ***** PASS *****" |
return 0 |
277 |
if (! $?passes) set passes |
else |
278 |
set passes=($passes $dr) |
echo createcodelet: failed to compile codelet 1>&2 |
279 |
endif |
exit 1 |
280 |
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fi |
281 |
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} |
282 |
|
|
283 |
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formatresults() |
284 |
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{ |
285 |
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# formatresults expt genmake depend make run results* |
286 |
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|
287 |
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nm=$1 |
288 |
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printf '%s %s %s %s' $2 $3 $4 $5 |
289 |
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shift; shift; shift; shift; shift; |
290 |
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printf '%3s' $@ |
291 |
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|
292 |
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if [ $1 = '--' ]; then |
293 |
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printf ' N/O ' |
294 |
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else |
295 |
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if [ $1 -gt 12 ]; then |
296 |
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printf ' pass' |
297 |
else |
else |
298 |
echo " error" |
printf ' FAIL' |
299 |
echo " ***** An error occured running the model *****" |
fi |
300 |
tail output.txt |
fi |
301 |
echo The runtime error occured in \"$dr\" |
printf ' %s' $nm |
302 |
if ($?on_error_die) exit 1 |
printf '\n' |
303 |
set pass=- |
|
304 |
endif |
} |
305 |
rm -f high.txt oldhigh.txt low.txt oldlow.txt output.txt make.log |
|
306 |
endif |
show_help() |
307 |
cd .. |
{ |
308 |
endif |
cat - << EOF |
309 |
echo "" |
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
310 |
cd .. |
-help Show this help message |
311 |
# Pretty summary |
-quick Skip "genmake" and "make depend" if the Makefile exists |
312 |
printresults: |
-quiet Reduce the amount of output |
313 |
printf ' %s\t %s\t %s\t %s\t %s\t %s\t %s\t%s\n' $config $makedepend $compile $execute $exactmatch $accuracy $pass $dr >> summary.txt |
-verbose Produce copious amounts of output |
314 |
end |
-debug Produce even more output which will mean nothing to most |
315 |
echo ============================================================================== |
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
316 |
echo "" |
-clean Do "make CLEAN" after compiling and testing. |
317 |
|
-longtest Compare numeric output for mean and s.d. of variables. |
318 |
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-noieee By default, $0 uses the -ieee option for genmake. This turns it off. |
319 |
|
|
320 |
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Normal usage: |
321 |
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$0 * Configure, compile, run and analyze in all experiment directories |
322 |
|
EOF |
323 |
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} |
324 |
|
|
325 |
|
scandirs() |
326 |
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{ |
327 |
|
if [ $# -eq 0 ]; then |
328 |
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for arg in * |
329 |
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do |
330 |
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test -d $arg/input && echo $arg |
331 |
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done |
332 |
|
else |
333 |
|
echo $* |
334 |
|
fi |
335 |
|
} |
336 |
|
|
337 |
|
############################################################################### |
338 |
|
|
339 |
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# Main function |
340 |
|
|
341 |
|
# Default properties |
342 |
|
debug=0 |
343 |
|
verbose=1 |
344 |
|
quick=0 |
345 |
|
force=0 |
346 |
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clean=0 |
347 |
|
ieee=1 |
348 |
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longtest=0 |
349 |
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expts='' |
350 |
|
|
351 |
|
# Process arguments |
352 |
|
for arg in $@ |
353 |
|
do |
354 |
|
case $arg in |
355 |
|
-quick) quick=1;; |
356 |
|
-verbose) verbose=2;; |
357 |
|
-debug) debug=1;; |
358 |
|
-force) force=1;; |
359 |
|
-clean) clean=1;; |
360 |
|
-noieee) ieee=0;; |
361 |
|
-longtest) longtest=1;; |
362 |
|
-quiet) verbose=0;; |
363 |
|
-help) show_help; exit 0;; |
364 |
|
-*) echo Unrecognized option:$arg; exit 9;; |
365 |
|
*) test -d $arg && expts=`echo $expts $arg`;; |
366 |
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esac |
367 |
|
done |
368 |
|
|
369 |
|
if [ $force -gt 0 -a $quick -gt 0 ]; then |
370 |
|
echo You specified -quick and -force together which conflict. |
371 |
|
echo Please specify either -quick or -force or neither but not both. |
372 |
|
exit 1 |
373 |
|
fi |
374 |
|
|
375 |
|
#if [ ${#expts} -eq 0 ]; then |
376 |
|
# echo Scanning all directories |
377 |
|
# for arg in * |
378 |
|
# do |
379 |
|
# test -d $arg && expts=`echo $expts $arg` |
380 |
|
# done |
381 |
|
#fi |
382 |
|
expts=`scandirs $expts` |
383 |
|
|
384 |
|
createcodelet |
385 |
|
|
386 |
|
if [ $longtest -gt 0 ]; then |
387 |
|
cat << EOF > summary.txt |
388 |
|
T S U V |
389 |
|
C D M c m s m s m s m s |
390 |
|
n p a R g m m e . m m e . m m e . m m e . |
391 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
392 |
|
g d e n d n x n . n x n . n x n . n x n . |
393 |
|
|
394 |
|
EOF |
395 |
|
else |
396 |
|
cat << EOF > summary.txt |
397 |
|
T S U V |
398 |
|
C D M c |
399 |
|
n p a R g m m m m m m m m |
400 |
|
f n k u 2 i a i a i a i a |
401 |
|
g d e n d n x n x n x n x |
402 |
|
|
403 |
|
EOF |
404 |
|
fi |
405 |
|
|
406 |
|
# Now configue, make, run and test in each directory |
407 |
|
for dir in $expts |
408 |
|
do |
409 |
|
if [ -r $dir/results/output.txt ]; then |
410 |
|
echo ------------------------------------------------------------------------------- |
411 |
|
echo |
412 |
|
echo Experiment: $dir |
413 |
|
echo |
414 |
|
unset genmake makedepend make run |
415 |
|
if [ $longtest -gt 0 ]; then |
416 |
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
417 |
|
else |
418 |
|
results='-- -- -- -- -- -- -- -- --' |
419 |
|
fi |
420 |
|
genmakemodel $dir/input && genmake=Y \ |
421 |
|
&& makecleancompile $dir/input \ |
422 |
|
&& makedependmodel $dir/input && makedepend=Y \ |
423 |
|
&& makemodel $dir/input && make=Y \ |
424 |
|
&& runmodel $dir/input mitgcmuv && run=Y \ |
425 |
|
&& results=`testoutput $dir` \ |
426 |
|
&& makecleanupafter $dir/input |
427 |
|
echo |
428 |
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results |
429 |
|
echo |
430 |
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt |
431 |
|
fi |
432 |
|
done |
433 |
|
|
434 |
|
rm tmp_cmpnum.f a.out |
435 |
|
|
436 |
echo "Summary:" |
echo ------------------------------------------------------------------------------- |
437 |
echo "" |
echo |
438 |
cat summary.txt |
cat summary.txt |