Annotation of /MITgcm/verification/testscript

#!/bin/sh

compare_lines()
{
# use codelet to compare lines
 if [ $verbose -gt 1 ]; then
  cat tmp3.txt 1>&2
 fi
 return `./a.out < tmp3.txt`
}

testoutput_for_prop()
{
# testoutput_for_prop dir s1 label subdir
#
#  compares files in $dir/$subdir/output.txt and $dir/results/output.txt
#  using search strings s1 and text label 
 
 if [ $debug -gt 0 ]; then
  echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
 fi
 if [ -r $1/$4/output.txt ]; then
  grep "$2" $1/$4/output.txt | sed 's/.*=//' | nl > tmp1.txt
  lncnt=`wc -l tmp1.txt | awk '{print $1}' `
  if [ $lncnt -lt 3 ]; then
   if [ $verbose -gt 0 ]; then
    echo Not enough lines of output when searching for "$2" 1>&2
   fi
   return 99
  fi
 else
  echo testoutput_for_prop: output.txt from model run was not readable 1>&2
  return 99
 fi
 if [ $debug -gt 0 ]; then
  echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2
 fi
 grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt
  lncnt=`wc -l tmp2.txt | awk '{print $1}' `
  if [ $lncnt -lt 3 ]; then
   if [ $verbose -gt 0 ]; then
    echo Not enough lines of output when searching for "$2" 1>&2
   fi
   return 99
  fi
 if [ $debug -gt 0 ]; then
  echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
 fi
 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
 if [ $debug -gt 0 ]; then
  echo testoutput_for_prop: compare_lines 1>&2
 fi
 compare_lines
 digits_of_similarity=$?
 if [ $digits_of_similarity -eq 99 ]; then
  if [ $verbose -gt 0 ]; then
   echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
  fi
  digits_of_similarity=99
 else
  if [ $verbose -gt 0 ]; then
   echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
  fi
 fi
 rm tmp1.txt tmp2.txt tmp3.txt

 return $digits_of_similarity
}

dashnum()
{
# dashnum n1 n2 n3 ...
#
#  print numbers using %3i format or "--" if number = 99
for num in $@
do
 if [ $num = 99 ]; then
  printf ' --'
 else
  printf '%3i' $num
 fi
done
}

testoutput()
{
# testoutput diretory subdir
#
#  test output in "directory"

if [ $debug -gt 0 ]; then
 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
fi
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$?
if [ $debug -gt 0 ]; then
 echo testoutput: cg2dres=$cg2dres 1>&2
fi

if [ $longtest -gt 0 ]; then
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$?
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$?
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$?
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$?
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$?
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$?
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$?
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$?
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$?
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$?
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$?
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$?
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$?
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$?
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$?
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$?
else
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$?
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$?
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$?
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$?
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$?
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$?
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$?
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$?
fi

dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \
        $umin $umax $umean $usd $vmin $vmax $vmean $vsd
#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \
#       $umin $umax $umean $usd $vmin $vmax $vmean $vsd
}

genmakemodel()
{
# genmakemodel directory
 ( cd $1;
   if [ $quick -eq 0 -o ! -r Makefile ]; then
    printf 'genmake ... ' 1>&2
    if [ $ieee -eq 0 ]; then
     ../../../tools/genmake2 -mods=../code > make.log 2>&1
    else
     ../../../tools/genmake2 -ieee -mods=../code > make.log 2>&1
    fi
    if [ $? -ne 0 ]; then
     tail make.log
     echo genmakemodel: $genmake failed 1>&2
     return 1
    else
      echo succesful 1>&2
    fi
   fi
 )
}

makecleancompile()
{
# makecleancompile directory
 ( cd $1;
   if [ $force -gt 0 ]; then
    rm -f output.txt
    printf 'make clean ... ' 2>&1
    make CLEAN >> make.log 2>&1
    if [ $? -ne 0 ]; then
      tail make.log
      echo makecleancompile: make clean failed 1>&2
      return 1
    else
      echo succesful 1>&2
    fi
   fi
 )
}

makecleanupafter()
{
# makeupafter directory
 ( cd $1;
   if [ $clean -gt 0 ]; then
    rm -f output.txt
    printf 'make clean ... ' 2>&1
    make CLEAN >> make.log 2>&1
    if [ $? -ne 0 ]; then
      tail make.log
      echo makeupafter: make clean failed 1>&2
      return 1
    else
      echo succesful 1>&2
    fi
   fi
 )
}

makedependmodel()
{
# makedependmodel directory
 ( cd $1;
   if [ $quick -eq 0 -o ! -r Makefile ]; then
    printf 'make depend ... ' 1>&2
    make cleanlinks >> make.log 2>&1
    make depend >> make.log 2>&1
    if [ $? -ne 0 ]; then
      tail make.log
      echo makemodel: make depend failed 1>&2
      return 1
    else
      echo succesful 1>&2
    fi
   fi
 )
}

makemodel()
{
# makemodel directory
 ( cd $1;
   if [ -r Makefile ]; then
    printf 'make ... ' 1>&2
    make >> make.log 2>&1
    if [ $? -ne 0 ]; then
     tail make.log
     echo failed 1>&2
     return 1
    else
     echo succesful 1>&2
    fi
   fi
 )
}

linkdata()
{
# linkdata flag 
# symbolically link data files to run directory
 if [ $1 -ne 0 ]; then
# if [ ! -r $2 ]; then
#  mkdir $2
# fi
  ( cd $2; ln -sf ../input/{eedata,data*,*.bin,POLY3*,pickup*} .)
 fi
}

runmodel()
{
# runmodel directory exe
#
#  runs the model "exe" in "directory" (exe is relative to directory)

 ( cd $1
   if [ -x $2 ]; then
    if [ $quick -eq 0 ]; then
     rm -f output.txt
    fi
    printf 'runmodel: ' 1>&2
     make output.txt && return 0
     return 1
   fi
 )
}

createcodelet()
{
# create codelet for comparing model output
cat > tmp_cmpnum.f <<EOFA
      program cmpnum
      implicit none
      real*8 a,b,diff
      integer linnum,best
      best=-16
  99  read(*,*,end=70,err=60) linnum,a,b
      diff=0.5*(abs(a)+abs(b))
c     print *,a,b,diff,abs(a-b)/diff
      if (diff.gt.1.e-12) then
        diff=abs(a-b)/diff
        if (diff.gt.0.) then
c         print *,int(log10(diff)),diff
          linnum=int(log10(diff))
          best=max(best,linnum)
        endif
      else
        if (best.eq.-16.and.diff.ne.0.) best=-22
      endif
      goto 99
  60  stop 'cmpnum: An error occured reading a,b'
  70  print *,-best
      end
EOFA
f77 tmp_cmpnum.f
if [ -x ./a.out ]; then
 return 0
else
 echo createcodelet: failed to compile codelet 1>&2
 exit 1
fi
}

formatresults()
{
# formatresults expt genmake depend make run results*

 nm=$1
 printf '%s %s %s %s' $2 $3 $4 $5
 shift; shift; shift; shift; shift;
 printf '%3s' $@

 if [ $1 = '--' ]; then
  printf ' N/O '
 else
  if [ $1 -gt 12 ]; then
   printf ' pass'
  else
   printf ' FAIL'
  fi
 fi
 printf '  %s' $nm
 printf '\n'

}

show_help()
{
cat - << EOF
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
 -help      Show this help message
 -quick     Skip "genmake" and "make depend" if the Makefile exists
 -quiet     Reduce the amount of output
 -verbose   Produce copious amounts of output
 -debug     Produce even more output which will mean nothing to most
 -force     Do "make CLEAN" before compiling. This forces a complete rebuild.
 -clean     Do "make CLEAN" after compiling and testing.
 -shorttest Don't compare numeric output for mean and s.d. of variables.
 -noieee    By default, $0 uses the -ieee option for genmake. This turns it off.
 -cleanup   Aggresively removes all model output, executables and object files
            and then exits. Use with care.

Normal usage:
 $0 *       Configure, compile, run and analyze in all experiment directories
EOF
}

scandirs()
{
if [ $# -eq 0 ]; then
 for arg in *
  do
   test -d $arg/input && echo $arg
 done
else
 echo $*
fi
}

clean_up()
{
# Find all executables, object files, CPP'd source and model output
# and DELETE it.
for opt in '-name "mitgcmuv*"' '-name "*.o"' '-name "*.f"' '-name "*.c"' '-name "fort.*"' '-name "make.log"' '-path *results -prune -o -name "*.meta"' '-path *results -prune -o -name "*.data"' '-type l'
 do
   echo Cleaning: find . $opt -exec rm {} \;
   find . $opt -exec rm {} \;
done
}

###############################################################################
###############################################################################
###############################################################################

# Main function

# Default properties
debug=0
verbose=1
quick=0
force=0
clean=0
ieee=1
longtest=1
expts=''
genmake=genmake

# Process arguments
for arg in $@
do
 case $arg in
   -cleanup) clean_up; exit 0;;
   -quick) quick=1;;
   -verbose) verbose=2;;
   -debug) debug=1;;
   -force) force=1;;
   -clean) clean=1;;
   -noieee) ieee=0;;
   -shorttest) longtest=0;;
   -quiet) verbose=0;;
   -help) show_help; exit 0;;
   -*) echo Unrecognized option:$arg; exit 9;;
   *) test -d $arg && expts=`echo $expts $arg`;;
 esac
done

if [ $force -gt 0 -a $quick -gt 0 ]; then
 echo You specified -quick and -force together which conflict.
 echo Please specify either -quick or -force or neither but not both.
 exit 1
fi

#if [ ${#expts} -eq 0 ]; then
# echo Scanning all directories
# for arg in *
#  do
#   test -d $arg && expts=`echo $expts $arg`
# done
#fi
expts=`scandirs $expts`

createcodelet

date > summary.txt
if [ $longtest -gt 0 ]; then
cat << EOF >> summary.txt
                T           S           U           V
C D M    c        m  s        m  s        m  s        m  s
n p a R  g  m  m  e  .  m  m  e  .  m  m  e  .  m  m  e  .
f n k u  2  i  a  a  d  i  a  a  d  i  a  a  d  i  a  a  d
g d e n  d  n  x  n  .  n  x  n  .  n  x  n  .  n  x  n  .

EOF
else
cat << EOF >> summary.txt
              T     S     U     V
C D M    c                        
n p a R  g  m  m  m  m  m  m  m  m
f n k u  2  i  a  i  a  i  a  i  a
g d e n  d  n  x  n  x  n  x  n  x

EOF
fi

# Now configue, make, run and test in each directory
for dir in $expts
do
 if [ -r $dir/results/output.txt ]; then
 echo -------------------------------------------------------------------------------
 echo
 echo Experiment: $dir
 echo
 unset genmakepass makedepend make run
 if [ $longtest -gt 0 ]; then
  results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
 else
  results='-- -- -- -- -- -- -- -- --'
 fi
 if [ -r $dir/build ]; then
  seperatebuilddir=1
  builddir=build
  rundir=build
  (cd $dir/input; rm -f *.{o,f,c,F} work* output.txt Make* make.log; )
  (cd $dir/build; ln -sf ../input/* .)
 else
  seperatebuilddir=0
  builddir=input
  rundir=input
 fi
 genmakemodel $dir/$builddir && genmakepass=Y \
 && makecleancompile $dir/$builddir \
 && makedependmodel $dir/$builddir && makedepend=Y \
 && makemodel $dir/$builddir && make=Y \
 && linkdata $seperatebuilddir $dir/$rundir \
 && runmodel $dir/$builddir mitgcmuv && run=Y \
 && results=`testoutput $dir $rundir` \
 && makecleanupafter $dir/$builddir
 echo
 formatresults $dir ${genmakepass:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results
 echo
 formatresults $dir ${genmakepass:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt
 fi
done

rm tmp_cmpnum.f a.out

echo -------------------------------------------------------------------------------
echo 
date >> summary.txt
cat summary.txt
1	adcroft	1.8	#!/bin/sh
2	adcroft	1.1
3	adcroft	1.8	compare_lines()
4			{
5			# use codelet to compare lines
6	adcroft	1.9	if [ $verbose -gt 1 ]; then
7			cat tmp3.txt 1>&2
8			fi
9	adcroft	1.8	return `./a.out < tmp3.txt`
10			}
11
12			testoutput_for_prop()
13			{
14	adcroft	1.23	# testoutput_for_prop dir s1 label subdir
15	adcroft	1.8	#
16	adcroft	1.23	# compares files in $dir/$subdir/output.txt and $dir/results/output.txt
17	adcroft	1.8	# using search strings s1 and text label
18
19			if [ $debug -gt 0 ]; then
20	adcroft	1.23	echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
21	adcroft	1.8	fi
22	adcroft	1.23	if [ -r $1/$4/output.txt ]; then
23			grep "$2" $1/$4/output.txt \| sed 's/.*=//' \| nl > tmp1.txt
24	adcroft	1.22	lncnt=`wc -l tmp1.txt \| awk '{print $1}' `
25			if [ $lncnt -lt 3 ]; then
26			if [ $verbose -gt 0 ]; then
27			echo Not enough lines of output when searching for "$2" 1>&2
28			fi
29			return 99
30			fi
31	adcroft	1.1	else
32	adcroft	1.8	echo testoutput_for_prop: output.txt from model run was not readable 1>&2
33			return 99
34			fi
35			if [ $debug -gt 0 ]; then
36			echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2
37			fi
38			grep "$2" $1/results/output.txt \| sed 's/.*=//' \| nl > tmp2.txt
39	adcroft	1.22	lncnt=`wc -l tmp2.txt \| awk '{print $1}' `
40			if [ $lncnt -lt 3 ]; then
41			if [ $verbose -gt 0 ]; then
42			echo Not enough lines of output when searching for "$2" 1>&2
43			fi
44			return 99
45			fi
46	adcroft	1.8	if [ $debug -gt 0 ]; then
47			echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
48			fi
49			join tmp1.txt tmp2.txt \| awk '{print $1 " " $2 " " $3}' > tmp3.txt
50			if [ $debug -gt 0 ]; then
51			echo testoutput_for_prop: compare_lines 1>&2
52			fi
53	adcroft	1.9	compare_lines
54	adcroft	1.8	digits_of_similarity=$?
55			if [ $digits_of_similarity -eq 99 ]; then
56			if [ $verbose -gt 0 ]; then
57			echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
58			fi
59			digits_of_similarity=99
60			else
61			if [ $verbose -gt 0 ]; then
62			echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
63			fi
64			fi
65			rm tmp1.txt tmp2.txt tmp3.txt
66
67			return $digits_of_similarity
68			}
69
70			dashnum()
71			{
72			# dashnum n1 n2 n3 ...
73			#
74			# print numbers using %3i format or "--" if number = 99
75			for num in $@
76			do
77			if [ $num = 99 ]; then
78			printf ' --'
79			else
80			printf '%3i' $num
81			fi
82			done
83			}
84
85			testoutput()
86			{
87	adcroft	1.23	# testoutput diretory subdir
88	adcroft	1.8	#
89			# test output in "directory"
90
91			if [ $debug -gt 0 ]; then
92			echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
93			fi
94	adcroft	1.23	testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$?
95	adcroft	1.8	if [ $debug -gt 0 ]; then
96			echo testoutput: cg2dres=$cg2dres 1>&2
97			fi
98
99	adcroft	1.10	if [ $longtest -gt 0 ]; then
100	adcroft	1.23	testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$?
101			testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$?
102			testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$?
103			testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$?
104			testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$?
105			testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$?
106			testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$?
107			testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$?
108			testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$?
109			testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$?
110			testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$?
111			testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$?
112			testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$?
113			testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$?
114			testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$?
115			testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$?
116	adcroft	1.8	else
117	adcroft	1.23	testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$?
118			testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$?
119			testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$?
120			testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$?
121			testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$?
122			testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$?
123			testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$?
124			testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$?
125	adcroft	1.8	fi
126
127			dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \
128			$umin $umax $umean $usd $vmin $vmax $vmean $vsd
129			#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \
130			# $umin $umax $umean $usd $vmin $vmax $vmean $vsd
131			}
132
133			genmakemodel()
134			{
135			# genmakemodel directory
136			( cd $1;
137			if [ $quick -eq 0 -o ! -r Makefile ]; then
138			printf 'genmake ... ' 1>&2
139	adcroft	1.13	if [ $ieee -eq 0 ]; then
140	adcroft	1.26	../../../tools/genmake2 -mods=../code > make.log 2>&1
141	adcroft	1.13	else
142	adcroft	1.26	../../../tools/genmake2 -ieee -mods=../code > make.log 2>&1
143	adcroft	1.13	fi
144	adcroft	1.8	if [ $? -ne 0 ]; then
145			tail make.log
146	edhill	1.25	echo genmakemodel: $genmake failed 1>&2
147	adcroft	1.8	return 1
148			else
149			echo succesful 1>&2
150			fi
151			fi
152			)
153			}
154
155	adcroft	1.18	makecleancompile()
156	adcroft	1.10	{
157	adcroft	1.18	# makecleancompile directory
158			( cd $1;
159			if [ $force -gt 0 ]; then
160			rm -f output.txt
161			printf 'make clean ... ' 2>&1
162			make CLEAN >> make.log 2>&1
163			if [ $? -ne 0 ]; then
164			tail make.log
165			echo makecleancompile: make clean failed 1>&2
166			return 1
167			else
168			echo succesful 1>&2
169			fi
170			fi
171			)
172			}
173
174			makecleanupafter()
175			{
176			# makeupafter directory
177	adcroft	1.10	( cd $1;
178			if [ $clean -gt 0 ]; then
179	adcroft	1.15	rm -f output.txt
180	adcroft	1.10	printf 'make clean ... ' 2>&1
181			make CLEAN >> make.log 2>&1
182			if [ $? -ne 0 ]; then
183			tail make.log
184	adcroft	1.18	echo makeupafter: make clean failed 1>&2
185	adcroft	1.10	return 1
186			else
187			echo succesful 1>&2
188			fi
189			fi
190			)
191			}
192
193	adcroft	1.8	makedependmodel()
194			{
195			# makedependmodel directory
196			( cd $1;
197			if [ $quick -eq 0 -o ! -r Makefile ]; then
198			printf 'make depend ... ' 1>&2
199			make cleanlinks >> make.log 2>&1
200			make depend >> make.log 2>&1
201			if [ $? -ne 0 ]; then
202			tail make.log
203			echo makemodel: make depend failed 1>&2
204			return 1
205			else
206			echo succesful 1>&2
207			fi
208			fi
209			)
210			}
211
212			makemodel()
213			{
214			# makemodel directory
215			( cd $1;
216			if [ -r Makefile ]; then
217			printf 'make ... ' 1>&2
218			make >> make.log 2>&1
219			if [ $? -ne 0 ]; then
220			tail make.log
221			echo failed 1>&2
222			return 1
223			else
224			echo succesful 1>&2
225			fi
226			fi
227			)
228			}
229
230	adcroft	1.23	linkdata()
231			{
232			# linkdata flag
233			# symbolically link data files to run directory
234			if [ $1 -ne 0 ]; then
235			# if [ ! -r $2 ]; then
236			# mkdir $2
237			# fi
238	adcroft	1.26	( cd $2; ln -sf ../input/{eedata,data,.bin,POLY3,pickup} .)
239	adcroft	1.23	fi
240			}
241
242	adcroft	1.8	runmodel()
243			{
244			# runmodel directory exe
245			#
246			# runs the model "exe" in "directory" (exe is relative to directory)
247
248			( cd $1
249			if [ -x $2 ]; then
250	adcroft	1.16	if [ $quick -eq 0 ]; then
251	adcroft	1.15	rm -f output.txt
252	adcroft	1.8	fi
253	adcroft	1.19	printf 'runmodel: ' 1>&2
254	adcroft	1.23	make output.txt && return 0
255			return 1
256	adcroft	1.8	fi
257			)
258			}
259
260			createcodelet()
261			{
262			# create codelet for comparing model output
263			cat > tmp_cmpnum.f <<EOFA
264			program cmpnum
265			implicit none
266			real*8 a,b,diff
267			integer linnum,best
268			best=-16
269			99 read(,,end=70,err=60) linnum,a,b
270			diff=0.5*(abs(a)+abs(b))
271	adcroft	1.9	c print *,a,b,diff,abs(a-b)/diff
272			if (diff.gt.1.e-12) then
273	adcroft	1.8	diff=abs(a-b)/diff
274			if (diff.gt.0.) then
275			c print *,int(log10(diff)),diff
276			linnum=int(log10(diff))
277			best=max(best,linnum)
278			endif
279	adcroft	1.9	else
280			if (best.eq.-16.and.diff.ne.0.) best=-22
281	adcroft	1.1	endif
282	adcroft	1.8	goto 99
283			60 stop 'cmpnum: An error occured reading a,b'
284			70 print *,-best
285			end
286			EOFA
287			f77 tmp_cmpnum.f
288			if [ -x ./a.out ]; then
289			return 0
290			else
291			echo createcodelet: failed to compile codelet 1>&2
292			exit 1
293			fi
294			}
295
296			formatresults()
297			{
298			# formatresults expt genmake depend make run results*
299
300			nm=$1
301			printf '%s %s %s %s' $2 $3 $4 $5
302			shift; shift; shift; shift; shift;
303			printf '%3s' $@
304
305			if [ $1 = '--' ]; then
306			printf ' N/O '
307			else
308			if [ $1 -gt 12 ]; then
309			printf ' pass'
310	adcroft	1.1	else
311	adcroft	1.8	printf ' FAIL'
312			fi
313			fi
314			printf ' %s' $nm
315			printf '\n'
316
317			}
318
319			show_help()
320			{
321			cat - << EOF
322			$0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
323			-help Show this help message
324			-quick Skip "genmake" and "make depend" if the Makefile exists
325			-quiet Reduce the amount of output
326			-verbose Produce copious amounts of output
327	adcroft	1.10	-debug Produce even more output which will mean nothing to most
328	adcroft	1.18	-force Do "make CLEAN" before compiling. This forces a complete rebuild.
329			-clean Do "make CLEAN" after compiling and testing.
330	adcroft	1.20	-shorttest Don't compare numeric output for mean and s.d. of variables.
331	adcroft	1.14	-noieee By default, $0 uses the -ieee option for genmake. This turns it off.
332	adcroft	1.21	-cleanup Aggresively removes all model output, executables and object files
333			and then exits. Use with care.
334	adcroft	1.8
335			Normal usage:
336			$0 * Configure, compile, run and analyze in all experiment directories
337			EOF
338			}
339
340	adcroft	1.11	scandirs()
341			{
342			if [ $# -eq 0 ]; then
343			for arg in *
344			do
345			test -d $arg/input && echo $arg
346			done
347			else
348			echo $*
349			fi
350			}
351
352	adcroft	1.21	clean_up()
353			{
354			# Find all executables, object files, CPP'd source and model output
355			# and DELETE it.
356	adcroft	1.23	for opt in '-name "mitgcmuv"' '-name ".o"' '-name ".f"' '-name ".c"' '-name "fort."' '-name "make.log"' '-path results -prune -o -name ".meta"' '-path results -prune -o -name "*.data"' '-type l'
357	adcroft	1.21	do
358			echo Cleaning: find . $opt -exec rm {} \;
359			find . $opt -exec rm {} \;
360			done
361			}
362
363	adcroft	1.8	###############################################################################
364	adcroft	1.23	###############################################################################
365			###############################################################################
366	adcroft	1.8
367			# Main function
368
369			# Default properties
370			debug=0
371			verbose=1
372			quick=0
373	adcroft	1.18	force=0
374	adcroft	1.10	clean=0
375	adcroft	1.14	ieee=1
376	adcroft	1.20	longtest=1
377	adcroft	1.8	expts=''
378	edhill	1.25	genmake=genmake
379	adcroft	1.8
380			# Process arguments
381			for arg in $@
382			do
383			case $arg in
384	adcroft	1.21	-cleanup) clean_up; exit 0;;
385	adcroft	1.8	-quick) quick=1;;
386			-verbose) verbose=2;;
387			-debug) debug=1;;
388	adcroft	1.18	-force) force=1;;
389	adcroft	1.10	-clean) clean=1;;
390	adcroft	1.14	-noieee) ieee=0;;
391	adcroft	1.20	-shorttest) longtest=0;;
392	adcroft	1.8	-quiet) verbose=0;;
393			-help) show_help; exit 0;;
394	adcroft	1.13	-*) echo Unrecognized option:$arg; exit 9;;
395	adcroft	1.8	*) test -d $arg && expts=`echo $expts $arg`;;
396			esac
397			done
398	adcroft	1.15
399	adcroft	1.18	if [ $force -gt 0 -a $quick -gt 0 ]; then
400			echo You specified -quick and -force together which conflict.
401			echo Please specify either -quick or -force or neither but not both.
402	adcroft	1.15	exit 1
403			fi
404	adcroft	1.8
405	adcroft	1.11	#if [ ${#expts} -eq 0 ]; then
406			# echo Scanning all directories
407			# for arg in *
408			# do
409			# test -d $arg && expts=`echo $expts $arg`
410			# done
411			#fi
412			expts=`scandirs $expts`
413	adcroft	1.8
414			createcodelet
415
416	jmc	1.24	date > summary.txt
417	adcroft	1.10	if [ $longtest -gt 0 ]; then
418	jmc	1.24	cat << EOF >> summary.txt
419	adcroft	1.8	T S U V
420			C D M c m s m s m s m s
421			n p a R g m m e . m m e . m m e . m m e .
422			f n k u 2 i a a d i a a d i a a d i a a d
423			g d e n d n x n . n x n . n x n . n x n .
424
425			EOF
426			else
427	jmc	1.24	cat << EOF >> summary.txt
428	adcroft	1.8	T S U V
429			C D M c
430			n p a R g m m m m m m m m
431			f n k u 2 i a i a i a i a
432			g d e n d n x n x n x n x
433
434			EOF
435			fi
436
437			# Now configue, make, run and test in each directory
438			for dir in $expts
439			do
440			if [ -r $dir/results/output.txt ]; then
441			echo -------------------------------------------------------------------------------
442			echo
443			echo Experiment: $dir
444			echo
445	edhill	1.25	unset genmakepass makedepend make run
446	adcroft	1.12	if [ $longtest -gt 0 ]; then
447			results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
448			else
449			results='-- -- -- -- -- -- -- -- --'
450			fi
451	adcroft	1.23	if [ -r $dir/build ]; then
452			seperatebuilddir=1
453			builddir=build
454			rundir=build
455			(cd $dir/input; rm -f .{o,f,c,F} work output.txt Make* make.log; )
456			(cd $dir/build; ln -sf ../input/* .)
457			else
458			seperatebuilddir=0
459			builddir=input
460			rundir=input
461			fi
462	edhill	1.25	genmakemodel $dir/$builddir && genmakepass=Y \
463	adcroft	1.23	&& makecleancompile $dir/$builddir \
464			&& makedependmodel $dir/$builddir && makedepend=Y \
465			&& makemodel $dir/$builddir && make=Y \
466			&& linkdata $seperatebuilddir $dir/$rundir \
467			&& runmodel $dir/$builddir mitgcmuv && run=Y \
468			&& results=`testoutput $dir $rundir` \
469			&& makecleanupafter $dir/$builddir
470	adcroft	1.8	echo
471	edhill	1.25	formatresults $dir ${genmakepass:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results
472	adcroft	1.8	echo
473	edhill	1.25	formatresults $dir ${genmakepass:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt
474	adcroft	1.8	fi
475			done
476
477			rm tmp_cmpnum.f a.out
478	adcroft	1.1
479	adcroft	1.8	echo -------------------------------------------------------------------------------
480			echo
481	jmc	1.24	date >> summary.txt
482	adcroft	1.1	cat summary.txt