1 |
adcroft |
1.8 |
#!/bin/sh |
2 |
adcroft |
1.1 |
|
3 |
adcroft |
1.8 |
compare_lines() |
4 |
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{ |
5 |
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# use codelet to compare lines |
6 |
adcroft |
1.9 |
if [ $verbose -gt 1 ]; then |
7 |
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cat tmp3.txt 1>&2 |
8 |
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fi |
9 |
adcroft |
1.8 |
return `./a.out < tmp3.txt` |
10 |
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} |
11 |
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12 |
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testoutput_for_prop() |
13 |
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{ |
14 |
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# testoutput_for_prop dir s1 label |
15 |
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# |
16 |
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# compares files in $dir/input/output.txt and $dir/results.output.txt |
17 |
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# using search strings s1 and text label |
18 |
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19 |
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if [ $debug -gt 0 ]; then |
20 |
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echo testoutput_for_prop: grep "$2" $1/input/output.txt 1>&2 |
21 |
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fi |
22 |
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if [ -r $1/input/output.txt ]; then |
23 |
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grep "$2" $1/input/output.txt | sed 's/.*=//' | nl > tmp1.txt |
24 |
adcroft |
1.1 |
else |
25 |
adcroft |
1.8 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
26 |
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return 99 |
27 |
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fi |
28 |
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if [ $debug -gt 0 ]; then |
29 |
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echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
30 |
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fi |
31 |
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grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
32 |
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if [ $debug -gt 0 ]; then |
33 |
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echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
34 |
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fi |
35 |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
36 |
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if [ $debug -gt 0 ]; then |
37 |
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echo testoutput_for_prop: compare_lines 1>&2 |
38 |
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fi |
39 |
adcroft |
1.9 |
compare_lines |
40 |
adcroft |
1.8 |
digits_of_similarity=$? |
41 |
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if [ $digits_of_similarity -eq 99 ]; then |
42 |
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if [ $verbose -gt 0 ]; then |
43 |
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echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
44 |
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fi |
45 |
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digits_of_similarity=99 |
46 |
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else |
47 |
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if [ $verbose -gt 0 ]; then |
48 |
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
49 |
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fi |
50 |
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fi |
51 |
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rm tmp1.txt tmp2.txt tmp3.txt |
52 |
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53 |
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return $digits_of_similarity |
54 |
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} |
55 |
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56 |
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dashnum() |
57 |
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{ |
58 |
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# dashnum n1 n2 n3 ... |
59 |
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# |
60 |
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# print numbers using %3i format or "--" if number = 99 |
61 |
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for num in $@ |
62 |
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do |
63 |
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if [ $num = 99 ]; then |
64 |
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printf ' --' |
65 |
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else |
66 |
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printf '%3i' $num |
67 |
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fi |
68 |
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done |
69 |
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} |
70 |
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71 |
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testoutput() |
72 |
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{ |
73 |
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# testoutput diretory |
74 |
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# |
75 |
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# test output in "directory" |
76 |
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|
77 |
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if [ $debug -gt 0 ]; then |
78 |
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echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
79 |
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fi |
80 |
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testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual"; cg2dres=$? |
81 |
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if [ $debug -gt 0 ]; then |
82 |
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echo testoutput: cg2dres=$cg2dres 1>&2 |
83 |
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fi |
84 |
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|
85 |
adcroft |
1.10 |
if [ $longtest -gt 0 ]; then |
86 |
adcroft |
1.8 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum"; tmin=$? |
87 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum"; tmax=$? |
88 |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean"; tmean=$? |
89 |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d."; tsd=$? |
90 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum"; smin=$? |
91 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum"; smax=$? |
92 |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean"; smean=$? |
93 |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d."; ssd=$? |
94 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum"; umin=$? |
95 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum"; umax=$? |
96 |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean"; umean=$? |
97 |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d."; usd=$? |
98 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum"; vmin=$? |
99 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum"; vmax=$? |
100 |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean"; vmean=$? |
101 |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d."; vsd=$? |
102 |
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else |
103 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum"; tmin=$? |
104 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum"; tmax=$? |
105 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum"; smin=$? |
106 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum"; smax=$? |
107 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum"; umin=$? |
108 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum"; umax=$? |
109 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum"; vmin=$? |
110 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum"; vmax=$? |
111 |
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fi |
112 |
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113 |
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dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
114 |
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$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
115 |
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#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
116 |
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# $umin $umax $umean $usd $vmin $vmax $vmean $vsd |
117 |
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} |
118 |
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119 |
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genmakemodel() |
120 |
|
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{ |
121 |
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# genmakemodel directory |
122 |
|
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( cd $1; |
123 |
|
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
124 |
|
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printf 'genmake ... ' 1>&2 |
125 |
adcroft |
1.13 |
if [ $ieee -eq 0 ]; then |
126 |
|
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../../../tools/genmake -mods=../code > make.log 2>&1 |
127 |
|
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else |
128 |
|
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../../../tools/genmake -ieee -mods=../code > make.log 2>&1 |
129 |
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fi |
130 |
adcroft |
1.8 |
if [ $? -ne 0 ]; then |
131 |
|
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tail make.log |
132 |
adcroft |
1.10 |
echo genmakemodel: genmake failed 1>&2 |
133 |
adcroft |
1.8 |
return 1 |
134 |
|
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else |
135 |
|
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echo succesful 1>&2 |
136 |
|
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fi |
137 |
|
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fi |
138 |
|
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) |
139 |
|
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} |
140 |
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|
141 |
adcroft |
1.18 |
makecleancompile() |
142 |
adcroft |
1.10 |
{ |
143 |
adcroft |
1.18 |
# makecleancompile directory |
144 |
|
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( cd $1; |
145 |
|
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if [ $force -gt 0 ]; then |
146 |
|
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rm -f output.txt |
147 |
|
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printf 'make clean ... ' 2>&1 |
148 |
|
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make CLEAN >> make.log 2>&1 |
149 |
|
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if [ $? -ne 0 ]; then |
150 |
|
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tail make.log |
151 |
|
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echo makecleancompile: make clean failed 1>&2 |
152 |
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return 1 |
153 |
|
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else |
154 |
|
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echo succesful 1>&2 |
155 |
|
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fi |
156 |
|
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fi |
157 |
|
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) |
158 |
|
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} |
159 |
|
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|
160 |
|
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makecleanupafter() |
161 |
|
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{ |
162 |
|
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# makeupafter directory |
163 |
adcroft |
1.10 |
( cd $1; |
164 |
|
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if [ $clean -gt 0 ]; then |
165 |
adcroft |
1.15 |
rm -f output.txt |
166 |
adcroft |
1.10 |
printf 'make clean ... ' 2>&1 |
167 |
|
|
make CLEAN >> make.log 2>&1 |
168 |
|
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if [ $? -ne 0 ]; then |
169 |
|
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tail make.log |
170 |
adcroft |
1.18 |
echo makeupafter: make clean failed 1>&2 |
171 |
adcroft |
1.10 |
return 1 |
172 |
|
|
else |
173 |
|
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echo succesful 1>&2 |
174 |
|
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fi |
175 |
|
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fi |
176 |
|
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) |
177 |
|
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} |
178 |
|
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|
179 |
adcroft |
1.8 |
makedependmodel() |
180 |
|
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{ |
181 |
|
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# makedependmodel directory |
182 |
|
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( cd $1; |
183 |
|
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
184 |
|
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printf 'make depend ... ' 1>&2 |
185 |
|
|
make cleanlinks >> make.log 2>&1 |
186 |
|
|
make depend >> make.log 2>&1 |
187 |
|
|
if [ $? -ne 0 ]; then |
188 |
|
|
tail make.log |
189 |
|
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echo makemodel: make depend failed 1>&2 |
190 |
|
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return 1 |
191 |
|
|
else |
192 |
|
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echo succesful 1>&2 |
193 |
|
|
fi |
194 |
|
|
fi |
195 |
|
|
) |
196 |
|
|
} |
197 |
|
|
|
198 |
|
|
makemodel() |
199 |
|
|
{ |
200 |
|
|
# makemodel directory |
201 |
|
|
( cd $1; |
202 |
|
|
if [ -r Makefile ]; then |
203 |
|
|
printf 'make ... ' 1>&2 |
204 |
|
|
make >> make.log 2>&1 |
205 |
|
|
if [ $? -ne 0 ]; then |
206 |
|
|
tail make.log |
207 |
|
|
echo failed 1>&2 |
208 |
|
|
return 1 |
209 |
|
|
else |
210 |
|
|
echo succesful 1>&2 |
211 |
|
|
fi |
212 |
|
|
fi |
213 |
|
|
) |
214 |
|
|
} |
215 |
|
|
|
216 |
|
|
runmodel() |
217 |
|
|
{ |
218 |
|
|
# runmodel directory exe |
219 |
|
|
# |
220 |
|
|
# runs the model "exe" in "directory" (exe is relative to directory) |
221 |
|
|
|
222 |
|
|
( cd $1 |
223 |
|
|
if [ -x $2 ]; then |
224 |
adcroft |
1.16 |
if [ $quick -eq 0 ]; then |
225 |
adcroft |
1.15 |
rm -f output.txt |
226 |
adcroft |
1.8 |
fi |
227 |
adcroft |
1.19 |
printf 'runmodel: ' 1>&2 |
228 |
adcroft |
1.16 |
make output.txt && return 0 |
229 |
|
|
# if [ ! -r output.txt -o $quick -eq 0 ]; then |
230 |
|
|
# echo runmodel: running... 1>&2 |
231 |
|
|
# ( ./$2 > output.txt 2>&1 ) && return 0 |
232 |
|
|
# rm -f output.txt |
233 |
|
|
# ( make output.txt ) && return 0 |
234 |
|
|
# return 1 |
235 |
|
|
# else |
236 |
|
|
# echo runmodel: output.txt is newer than executable 1>&2 |
237 |
|
|
# ( make output.txt ) && return 0 |
238 |
|
|
# return 0 |
239 |
|
|
# fi |
240 |
|
|
# else |
241 |
|
|
# echo runmodel: executable \"$1/$2\" is missing 1>&2 |
242 |
|
|
# return 1 |
243 |
adcroft |
1.8 |
fi |
244 |
|
|
) |
245 |
|
|
} |
246 |
|
|
|
247 |
|
|
createcodelet() |
248 |
|
|
{ |
249 |
|
|
# create codelet for comparing model output |
250 |
|
|
cat > tmp_cmpnum.f <<EOFA |
251 |
|
|
program cmpnum |
252 |
|
|
implicit none |
253 |
|
|
real*8 a,b,diff |
254 |
|
|
integer linnum,best |
255 |
|
|
best=-16 |
256 |
|
|
99 read(*,*,end=70,err=60) linnum,a,b |
257 |
|
|
diff=0.5*(abs(a)+abs(b)) |
258 |
adcroft |
1.9 |
c print *,a,b,diff,abs(a-b)/diff |
259 |
|
|
if (diff.gt.1.e-12) then |
260 |
adcroft |
1.8 |
diff=abs(a-b)/diff |
261 |
|
|
if (diff.gt.0.) then |
262 |
|
|
c print *,int(log10(diff)),diff |
263 |
|
|
linnum=int(log10(diff)) |
264 |
|
|
best=max(best,linnum) |
265 |
|
|
endif |
266 |
adcroft |
1.9 |
else |
267 |
|
|
if (best.eq.-16.and.diff.ne.0.) best=-22 |
268 |
adcroft |
1.1 |
endif |
269 |
adcroft |
1.8 |
goto 99 |
270 |
|
|
60 stop 'cmpnum: An error occured reading a,b' |
271 |
|
|
70 print *,-best |
272 |
|
|
end |
273 |
|
|
EOFA |
274 |
|
|
f77 tmp_cmpnum.f |
275 |
|
|
if [ -x ./a.out ]; then |
276 |
|
|
return 0 |
277 |
|
|
else |
278 |
|
|
echo createcodelet: failed to compile codelet 1>&2 |
279 |
|
|
exit 1 |
280 |
|
|
fi |
281 |
|
|
} |
282 |
|
|
|
283 |
|
|
formatresults() |
284 |
|
|
{ |
285 |
|
|
# formatresults expt genmake depend make run results* |
286 |
|
|
|
287 |
|
|
nm=$1 |
288 |
|
|
printf '%s %s %s %s' $2 $3 $4 $5 |
289 |
|
|
shift; shift; shift; shift; shift; |
290 |
|
|
printf '%3s' $@ |
291 |
|
|
|
292 |
|
|
if [ $1 = '--' ]; then |
293 |
|
|
printf ' N/O ' |
294 |
|
|
else |
295 |
|
|
if [ $1 -gt 12 ]; then |
296 |
|
|
printf ' pass' |
297 |
adcroft |
1.1 |
else |
298 |
adcroft |
1.8 |
printf ' FAIL' |
299 |
|
|
fi |
300 |
|
|
fi |
301 |
|
|
printf ' %s' $nm |
302 |
|
|
printf '\n' |
303 |
|
|
|
304 |
|
|
} |
305 |
|
|
|
306 |
|
|
show_help() |
307 |
|
|
{ |
308 |
|
|
cat - << EOF |
309 |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
310 |
|
|
-help Show this help message |
311 |
|
|
-quick Skip "genmake" and "make depend" if the Makefile exists |
312 |
|
|
-quiet Reduce the amount of output |
313 |
|
|
-verbose Produce copious amounts of output |
314 |
adcroft |
1.10 |
-debug Produce even more output which will mean nothing to most |
315 |
adcroft |
1.18 |
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
316 |
|
|
-clean Do "make CLEAN" after compiling and testing. |
317 |
adcroft |
1.20 |
-shorttest Don't compare numeric output for mean and s.d. of variables. |
318 |
adcroft |
1.14 |
-noieee By default, $0 uses the -ieee option for genmake. This turns it off. |
319 |
adcroft |
1.21 |
-cleanup Aggresively removes all model output, executables and object files |
320 |
|
|
and then exits. Use with care. |
321 |
adcroft |
1.8 |
|
322 |
|
|
Normal usage: |
323 |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
324 |
|
|
EOF |
325 |
|
|
} |
326 |
|
|
|
327 |
adcroft |
1.11 |
scandirs() |
328 |
|
|
{ |
329 |
|
|
if [ $# -eq 0 ]; then |
330 |
|
|
for arg in * |
331 |
|
|
do |
332 |
|
|
test -d $arg/input && echo $arg |
333 |
|
|
done |
334 |
|
|
else |
335 |
|
|
echo $* |
336 |
|
|
fi |
337 |
|
|
} |
338 |
|
|
|
339 |
adcroft |
1.21 |
clean_up() |
340 |
|
|
{ |
341 |
|
|
# Find all executables, object files, CPP'd source and model output |
342 |
|
|
# and DELETE it. |
343 |
|
|
for opt in '-name mitgcmuv*' '-name *.o' '-name *.f' '-name *.c' '-path *results -prune -o -name *.meta' '-path *results -prune -o -name *.data' '-type l' |
344 |
|
|
do |
345 |
|
|
echo Cleaning: find . $opt -exec rm {} \; |
346 |
|
|
find . $opt -exec rm {} \; |
347 |
|
|
done |
348 |
|
|
} |
349 |
|
|
|
350 |
adcroft |
1.8 |
############################################################################### |
351 |
|
|
|
352 |
|
|
# Main function |
353 |
|
|
|
354 |
|
|
# Default properties |
355 |
|
|
debug=0 |
356 |
|
|
verbose=1 |
357 |
|
|
quick=0 |
358 |
adcroft |
1.18 |
force=0 |
359 |
adcroft |
1.10 |
clean=0 |
360 |
adcroft |
1.14 |
ieee=1 |
361 |
adcroft |
1.20 |
longtest=1 |
362 |
adcroft |
1.8 |
expts='' |
363 |
|
|
|
364 |
|
|
# Process arguments |
365 |
|
|
for arg in $@ |
366 |
|
|
do |
367 |
|
|
case $arg in |
368 |
adcroft |
1.21 |
-cleanup) clean_up; exit 0;; |
369 |
adcroft |
1.8 |
-quick) quick=1;; |
370 |
|
|
-verbose) verbose=2;; |
371 |
|
|
-debug) debug=1;; |
372 |
adcroft |
1.18 |
-force) force=1;; |
373 |
adcroft |
1.10 |
-clean) clean=1;; |
374 |
adcroft |
1.14 |
-noieee) ieee=0;; |
375 |
adcroft |
1.20 |
-shorttest) longtest=0;; |
376 |
adcroft |
1.8 |
-quiet) verbose=0;; |
377 |
|
|
-help) show_help; exit 0;; |
378 |
adcroft |
1.13 |
-*) echo Unrecognized option:$arg; exit 9;; |
379 |
adcroft |
1.8 |
*) test -d $arg && expts=`echo $expts $arg`;; |
380 |
|
|
esac |
381 |
|
|
done |
382 |
adcroft |
1.15 |
|
383 |
adcroft |
1.18 |
if [ $force -gt 0 -a $quick -gt 0 ]; then |
384 |
|
|
echo You specified -quick and -force together which conflict. |
385 |
|
|
echo Please specify either -quick or -force or neither but not both. |
386 |
adcroft |
1.15 |
exit 1 |
387 |
|
|
fi |
388 |
adcroft |
1.8 |
|
389 |
adcroft |
1.11 |
#if [ ${#expts} -eq 0 ]; then |
390 |
|
|
# echo Scanning all directories |
391 |
|
|
# for arg in * |
392 |
|
|
# do |
393 |
|
|
# test -d $arg && expts=`echo $expts $arg` |
394 |
|
|
# done |
395 |
|
|
#fi |
396 |
|
|
expts=`scandirs $expts` |
397 |
adcroft |
1.8 |
|
398 |
|
|
createcodelet |
399 |
|
|
|
400 |
adcroft |
1.10 |
if [ $longtest -gt 0 ]; then |
401 |
adcroft |
1.8 |
cat << EOF > summary.txt |
402 |
|
|
T S U V |
403 |
|
|
C D M c m s m s m s m s |
404 |
|
|
n p a R g m m e . m m e . m m e . m m e . |
405 |
|
|
f n k u 2 i a a d i a a d i a a d i a a d |
406 |
|
|
g d e n d n x n . n x n . n x n . n x n . |
407 |
|
|
|
408 |
|
|
EOF |
409 |
|
|
else |
410 |
|
|
cat << EOF > summary.txt |
411 |
|
|
T S U V |
412 |
|
|
C D M c |
413 |
|
|
n p a R g m m m m m m m m |
414 |
|
|
f n k u 2 i a i a i a i a |
415 |
|
|
g d e n d n x n x n x n x |
416 |
|
|
|
417 |
|
|
EOF |
418 |
|
|
fi |
419 |
|
|
|
420 |
|
|
# Now configue, make, run and test in each directory |
421 |
|
|
for dir in $expts |
422 |
|
|
do |
423 |
|
|
if [ -r $dir/results/output.txt ]; then |
424 |
|
|
echo ------------------------------------------------------------------------------- |
425 |
|
|
echo |
426 |
|
|
echo Experiment: $dir |
427 |
|
|
echo |
428 |
|
|
unset genmake makedepend make run |
429 |
adcroft |
1.12 |
if [ $longtest -gt 0 ]; then |
430 |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
431 |
|
|
else |
432 |
|
|
results='-- -- -- -- -- -- -- -- --' |
433 |
|
|
fi |
434 |
adcroft |
1.8 |
genmakemodel $dir/input && genmake=Y \ |
435 |
adcroft |
1.18 |
&& makecleancompile $dir/input \ |
436 |
adcroft |
1.8 |
&& makedependmodel $dir/input && makedepend=Y \ |
437 |
|
|
&& makemodel $dir/input && make=Y \ |
438 |
|
|
&& runmodel $dir/input mitgcmuv && run=Y \ |
439 |
heimbach |
1.17 |
&& results=`testoutput $dir` \ |
440 |
adcroft |
1.18 |
&& makecleanupafter $dir/input |
441 |
adcroft |
1.8 |
echo |
442 |
|
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results |
443 |
|
|
echo |
444 |
|
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt |
445 |
|
|
fi |
446 |
|
|
done |
447 |
|
|
|
448 |
|
|
rm tmp_cmpnum.f a.out |
449 |
adcroft |
1.1 |
|
450 |
adcroft |
1.8 |
echo ------------------------------------------------------------------------------- |
451 |
|
|
echo |
452 |
adcroft |
1.1 |
cat summary.txt |