| 1 |
edhill |
1.1 |
#!/bin/sh |
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#EH3 Quick hack to cleanup previous runs |
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cleanup_previous_runs() |
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{ |
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echo "Cleaning up previous runs..." |
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for i in * ; do |
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d="$i/input" |
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echo " $d:" |
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if test -d $d -a -r "$i/results/output.txt" -a -r "$d/Makefile" ; then |
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make -C $d CLEAN |
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fi |
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done |
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} |
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compare_lines() |
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{ |
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# use codelet to compare lines |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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return `./a.out < tmp3.txt` |
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} |
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testoutput_for_prop() |
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{ |
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# testoutput_for_prop dir s1 label subdir |
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# |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
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# using search strings s1 and text label |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
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fi |
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if [ -r $1/$4/output.txt ]; then |
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grep "$2" $1/$4/output.txt | sed 's/.*=//' | nl > tmp1.txt |
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lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
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if [ $lncnt -lt 3 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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else |
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echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
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fi |
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grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
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lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
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if [ $lncnt -lt 3 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
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fi |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: compare_lines 1>&2 |
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fi |
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compare_lines |
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digits_of_similarity=$? |
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if [ $digits_of_similarity -eq 99 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
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fi |
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digits_of_similarity=99 |
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else |
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if [ $verbose -gt 0 ]; then |
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
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fi |
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fi |
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rm tmp1.txt tmp2.txt tmp3.txt |
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return $digits_of_similarity |
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} |
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dashnum() |
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{ |
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# dashnum n1 n2 n3 ... |
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# |
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# print numbers using %3i format or "--" if number = 99 |
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for num in $@ |
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do |
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if [ $num = 99 ]; then |
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printf ' --' |
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else |
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printf '%3i' $num |
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fi |
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done |
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} |
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testoutput() |
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{ |
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# testoutput diretory subdir |
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# |
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# test output in "directory" |
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if [ $debug -gt 0 ]; then |
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echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
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fi |
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testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$? |
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if [ $debug -gt 0 ]; then |
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echo testoutput: cg2dres=$cg2dres 1>&2 |
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fi |
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if [ $longtest -gt 0 ]; then |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$? |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$? |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$? |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$? |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$? |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$? |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$? |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$? |
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else |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
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fi |
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dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
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$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
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#printf '%3i' $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
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# $umin $umax $umean $usd $vmin $vmax $vmean $vsd |
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} |
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genmakemodel() |
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{ |
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# genmakemodel directory |
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( cd $1; |
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
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printf 'genmake ... ' 1>&2 |
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if [ $ieee -eq 0 ]; then |
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# ../../../tools/genmake -mods=../code > make.log 2>&1 |
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../../../tools/genmake2 --mods=../code --optfile=../../../tools/build_options/linux_g77 > make.log 2>&1 |
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else |
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# ../../../tools/genmake -ieee -mods=../code > make.log 2>&1 |
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../../../tools/genmake2 -ieee --mods=../code --optfile=../../../tools/build_options/linux_g77_faulks > make.log 2>&1 |
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fi |
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if [ $? -ne 0 ]; then |
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tail make.log |
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echo genmakemodel: genmake failed 1>&2 |
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return 1 |
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else |
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echo succesful 1>&2 |
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fi |
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fi |
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) |
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} |
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makecleancompile() |
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{ |
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# makecleancompile directory |
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( cd $1; |
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if [ $force -gt 0 ]; then |
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rm -f output.txt |
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printf 'make clean ... ' 2>&1 |
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make CLEAN >> make.log 2>&1 |
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if [ $? -ne 0 ]; then |
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tail make.log |
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echo makecleancompile: make clean failed 1>&2 |
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return 1 |
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else |
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echo succesful 1>&2 |
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fi |
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fi |
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) |
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} |
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makecleanupafter() |
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{ |
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# makeupafter directory |
| 192 |
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( cd $1; |
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if [ $clean -gt 0 ]; then |
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rm -f output.txt |
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printf 'make clean ... ' 2>&1 |
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make CLEAN >> make.log 2>&1 |
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if [ $? -ne 0 ]; then |
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tail make.log |
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echo makeupafter: make clean failed 1>&2 |
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return 1 |
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else |
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echo succesful 1>&2 |
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fi |
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fi |
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) |
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} |
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makedependmodel() |
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{ |
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# makedependmodel directory |
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( cd $1; |
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if [ $quick -eq 0 -o ! -r Makefile ]; then |
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printf 'make depend ... ' 1>&2 |
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make cleanlinks >> make.log 2>&1 |
| 215 |
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make depend >> make.log 2>&1 |
| 216 |
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if [ $? -ne 0 ]; then |
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tail make.log |
| 218 |
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echo makemodel: make depend failed 1>&2 |
| 219 |
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return 1 |
| 220 |
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else |
| 221 |
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echo succesful 1>&2 |
| 222 |
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fi |
| 223 |
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fi |
| 224 |
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) |
| 225 |
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} |
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makemodel() |
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{ |
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# makemodel directory |
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( cd $1; |
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if [ -r Makefile ]; then |
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printf 'make ... ' 1>&2 |
| 233 |
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make >> make.log 2>&1 |
| 234 |
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if [ $? -ne 0 ]; then |
| 235 |
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tail make.log |
| 236 |
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echo failed 1>&2 |
| 237 |
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return 1 |
| 238 |
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else |
| 239 |
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echo succesful 1>&2 |
| 240 |
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fi |
| 241 |
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fi |
| 242 |
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) |
| 243 |
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} |
| 244 |
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| 245 |
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linkdata() |
| 246 |
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{ |
| 247 |
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# linkdata flag |
| 248 |
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# symbolically link data files to run directory |
| 249 |
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if [ $1 -ne 0 ]; then |
| 250 |
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# if [ ! -r $2 ]; then |
| 251 |
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# mkdir $2 |
| 252 |
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# fi |
| 253 |
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( cd $2; ln -sf ../input/* .) |
| 254 |
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fi |
| 255 |
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} |
| 256 |
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| 257 |
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runmodel() |
| 258 |
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{ |
| 259 |
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# runmodel directory exe |
| 260 |
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# |
| 261 |
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# runs the model "exe" in "directory" (exe is relative to directory) |
| 262 |
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| 263 |
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( cd $1 |
| 264 |
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if [ -x $2 ]; then |
| 265 |
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if [ $quick -eq 0 ]; then |
| 266 |
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rm -f output.txt |
| 267 |
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fi |
| 268 |
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printf 'runmodel: ' 1>&2 |
| 269 |
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make output.txt && return 0 |
| 270 |
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return 1 |
| 271 |
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fi |
| 272 |
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) |
| 273 |
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} |
| 274 |
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| 275 |
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createcodelet() |
| 276 |
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{ |
| 277 |
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# create codelet for comparing model output |
| 278 |
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cat > tmp_cmpnum.f <<EOFA |
| 279 |
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program cmpnum |
| 280 |
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implicit none |
| 281 |
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real*8 a,b,diff |
| 282 |
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integer linnum,best |
| 283 |
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best=-16 |
| 284 |
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99 read(*,*,end=70,err=60) linnum,a,b |
| 285 |
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diff=0.5*(abs(a)+abs(b)) |
| 286 |
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c print *,a,b,diff,abs(a-b)/diff |
| 287 |
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if (diff.gt.1.e-12) then |
| 288 |
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diff=abs(a-b)/diff |
| 289 |
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if (diff.gt.0.) then |
| 290 |
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c print *,int(log10(diff)),diff |
| 291 |
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linnum=int(log10(diff)) |
| 292 |
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best=max(best,linnum) |
| 293 |
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endif |
| 294 |
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else |
| 295 |
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if (best.eq.-16.and.diff.ne.0.) best=-22 |
| 296 |
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endif |
| 297 |
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goto 99 |
| 298 |
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60 stop 'cmpnum: An error occured reading a,b' |
| 299 |
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70 print *,-best |
| 300 |
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end |
| 301 |
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EOFA |
| 302 |
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f77 tmp_cmpnum.f |
| 303 |
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if [ -x ./a.out ]; then |
| 304 |
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return 0 |
| 305 |
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else |
| 306 |
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echo createcodelet: failed to compile codelet 1>&2 |
| 307 |
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exit 1 |
| 308 |
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fi |
| 309 |
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} |
| 310 |
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| 311 |
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formatresults() |
| 312 |
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{ |
| 313 |
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# formatresults expt genmake depend make run results* |
| 314 |
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| 315 |
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nm=$1 |
| 316 |
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printf '%s %s %s %s' $2 $3 $4 $5 |
| 317 |
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shift; shift; shift; shift; shift; |
| 318 |
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printf '%3s' $@ |
| 319 |
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| 320 |
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if [ $1 = '--' ]; then |
| 321 |
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printf ' N/O ' |
| 322 |
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else |
| 323 |
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if [ $1 -gt 12 ]; then |
| 324 |
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printf ' pass' |
| 325 |
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else |
| 326 |
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printf ' FAIL' |
| 327 |
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fi |
| 328 |
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fi |
| 329 |
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printf ' %s' $nm |
| 330 |
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printf '\n' |
| 331 |
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| 332 |
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} |
| 333 |
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| 334 |
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show_help() |
| 335 |
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{ |
| 336 |
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cat - << EOF |
| 337 |
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$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
| 338 |
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-help Show this help message |
| 339 |
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-quick Skip "genmake" and "make depend" if the Makefile exists |
| 340 |
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-quiet Reduce the amount of output |
| 341 |
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-verbose Produce copious amounts of output |
| 342 |
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-debug Produce even more output which will mean nothing to most |
| 343 |
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-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
| 344 |
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-clean Do "make CLEAN" after compiling and testing. |
| 345 |
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-shorttest Don't compare numeric output for mean and s.d. of variables. |
| 346 |
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-noieee By default, $0 uses the -ieee option for genmake. This turns it off. |
| 347 |
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-cleanup Aggresively removes all model output, executables and object files |
| 348 |
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and then exits. Use with care. |
| 349 |
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| 350 |
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Normal usage: |
| 351 |
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$0 * Configure, compile, run and analyze in all experiment directories |
| 352 |
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EOF |
| 353 |
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} |
| 354 |
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| 355 |
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scandirs() |
| 356 |
|
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{ |
| 357 |
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if [ $# -eq 0 ]; then |
| 358 |
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for arg in * |
| 359 |
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do |
| 360 |
|
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test -d $arg/input && echo $arg |
| 361 |
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done |
| 362 |
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else |
| 363 |
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echo $* |
| 364 |
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fi |
| 365 |
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} |
| 366 |
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| 367 |
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clean_up() |
| 368 |
|
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{ |
| 369 |
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# Find all executables, object files, CPP'd source and model output |
| 370 |
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# and DELETE it. |
| 371 |
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for opt in '-name "mitgcmuv*"' '-name "*.o"' '-name "*.f"' '-name "*.c"' '-name "fort.*"' '-name "make.log"' '-path *results -prune -o -name "*.meta"' '-path *results -prune -o -name "*.data"' '-type l' |
| 372 |
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do |
| 373 |
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echo Cleaning: find . $opt -exec rm {} \; |
| 374 |
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find . $opt -exec rm {} \; |
| 375 |
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done |
| 376 |
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} |
| 377 |
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|
| 378 |
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|
############################################################################### |
| 379 |
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############################################################################### |
| 380 |
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############################################################################### |
| 381 |
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|
| 382 |
|
|
# Main function |
| 383 |
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|
| 384 |
|
|
# Default properties |
| 385 |
|
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debug=0 |
| 386 |
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verbose=1 |
| 387 |
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quick=0 |
| 388 |
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force=0 |
| 389 |
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clean=0 |
| 390 |
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ieee=1 |
| 391 |
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longtest=1 |
| 392 |
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expts='' |
| 393 |
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|
| 394 |
|
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# Process arguments |
| 395 |
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for arg in $@ |
| 396 |
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do |
| 397 |
|
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case $arg in |
| 398 |
|
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-cleanup) clean_up; exit 0;; |
| 399 |
|
|
-quick) quick=1;; |
| 400 |
|
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-verbose) verbose=2;; |
| 401 |
|
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-debug) debug=1;; |
| 402 |
|
|
-force) force=1;; |
| 403 |
|
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-clean) clean=1;; |
| 404 |
|
|
-noieee) ieee=0;; |
| 405 |
|
|
-shorttest) longtest=0;; |
| 406 |
|
|
-quiet) verbose=0;; |
| 407 |
|
|
-help) show_help; exit 0;; |
| 408 |
|
|
-*) echo Unrecognized option:$arg; exit 9;; |
| 409 |
|
|
*) test -d $arg && expts=`echo $expts $arg`;; |
| 410 |
|
|
esac |
| 411 |
|
|
done |
| 412 |
|
|
|
| 413 |
|
|
if [ $force -gt 0 -a $quick -gt 0 ]; then |
| 414 |
|
|
echo You specified -quick and -force together which conflict. |
| 415 |
|
|
echo Please specify either -quick or -force or neither but not both. |
| 416 |
|
|
exit 1 |
| 417 |
|
|
fi |
| 418 |
|
|
|
| 419 |
|
|
#if [ ${#expts} -eq 0 ]; then |
| 420 |
|
|
# echo Scanning all directories |
| 421 |
|
|
# for arg in * |
| 422 |
|
|
# do |
| 423 |
|
|
# test -d $arg && expts=`echo $expts $arg` |
| 424 |
|
|
# done |
| 425 |
|
|
#fi |
| 426 |
|
|
expts=`scandirs $expts` |
| 427 |
|
|
|
| 428 |
|
|
createcodelet |
| 429 |
|
|
|
| 430 |
|
|
date > summary.txt |
| 431 |
|
|
if [ $longtest -gt 0 ]; then |
| 432 |
|
|
cat << EOF >> summary.txt |
| 433 |
|
|
T S U V |
| 434 |
|
|
C D M c m s m s m s m s |
| 435 |
|
|
n p a R g m m e . m m e . m m e . m m e . |
| 436 |
|
|
f n k u 2 i a a d i a a d i a a d i a a d |
| 437 |
|
|
g d e n d n x n . n x n . n x n . n x n . |
| 438 |
|
|
|
| 439 |
|
|
EOF |
| 440 |
|
|
else |
| 441 |
|
|
cat << EOF >> summary.txt |
| 442 |
|
|
T S U V |
| 443 |
|
|
C D M c |
| 444 |
|
|
n p a R g m m m m m m m m |
| 445 |
|
|
f n k u 2 i a i a i a i a |
| 446 |
|
|
g d e n d n x n x n x n x |
| 447 |
|
|
|
| 448 |
|
|
EOF |
| 449 |
|
|
fi |
| 450 |
|
|
|
| 451 |
|
|
#EH3 Quick hack to cleanup previous runs |
| 452 |
|
|
cleanup_previous_runs |
| 453 |
|
|
|
| 454 |
|
|
# Now configue, make, run and test in each directory |
| 455 |
|
|
for dir in $expts |
| 456 |
|
|
do |
| 457 |
|
|
if [ -r $dir/results/output.txt ]; then |
| 458 |
|
|
echo ------------------------------------------------------------------------------- |
| 459 |
|
|
echo |
| 460 |
|
|
echo Experiment: $dir |
| 461 |
|
|
echo |
| 462 |
|
|
unset genmake makedepend make run |
| 463 |
|
|
if [ $longtest -gt 0 ]; then |
| 464 |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
| 465 |
|
|
else |
| 466 |
|
|
results='-- -- -- -- -- -- -- -- --' |
| 467 |
|
|
fi |
| 468 |
|
|
if [ -r $dir/build ]; then |
| 469 |
|
|
seperatebuilddir=1 |
| 470 |
|
|
builddir=build |
| 471 |
|
|
rundir=build |
| 472 |
|
|
(cd $dir/input; rm -f *.{o,f,c,F} work* output.txt Make* make.log; ) |
| 473 |
|
|
(cd $dir/build; ln -sf ../input/* .) |
| 474 |
|
|
else |
| 475 |
|
|
seperatebuilddir=0 |
| 476 |
|
|
builddir=input |
| 477 |
|
|
rundir=input |
| 478 |
|
|
fi |
| 479 |
|
|
genmakemodel $dir/$builddir && genmake=Y \ |
| 480 |
|
|
&& makecleancompile $dir/$builddir \ |
| 481 |
|
|
&& makedependmodel $dir/$builddir && makedepend=Y \ |
| 482 |
|
|
&& makemodel $dir/$builddir && make=Y \ |
| 483 |
|
|
&& linkdata $seperatebuilddir $dir/$rundir \ |
| 484 |
|
|
&& runmodel $dir/$builddir mitgcmuv && run=Y \ |
| 485 |
|
|
&& results=`testoutput $dir $rundir` \ |
| 486 |
|
|
&& makecleanupafter $dir/$builddir |
| 487 |
|
|
echo |
| 488 |
|
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results |
| 489 |
|
|
echo |
| 490 |
|
|
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> summary.txt |
| 491 |
|
|
fi |
| 492 |
|
|
done |
| 493 |
|
|
|
| 494 |
|
|
rm tmp_cmpnum.f a.out |
| 495 |
|
|
|
| 496 |
|
|
echo ------------------------------------------------------------------------------- |
| 497 |
|
|
echo |
| 498 |
|
|
date >> summary.txt |
| 499 |
|
|
cat summary.txt |
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