/[MITgcm]/MITgcm/verification/testreport
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revision 1.83 by jmc, Wed Jul 5 22:39:57 2006 UTC revision 1.87 by jmc, Mon Jul 31 20:48:41 2006 UTC
# Line 18  usage() Line 18  usage()
18      echo "  (-optfile=|-of=)STRING   list of optfiles to use"      echo "  (-optfile=|-of=)STRING   list of optfiles to use"
19      echo "  (-a|-addr) STRING        list of email recipients"      echo "  (-a|-addr) STRING        list of email recipients"
20      echo "                             (DEF=\"edhill@mitgcm.org\")"      echo "                             (DEF=\"edhill@mitgcm.org\")"
21      echo "  (-t|-tdir) STRING        list of test dirs to use"      echo "  (-t|-tdir) STRING        list of group and/or exp. dirs to test"
22      echo "                             (DEF=\"\" which builds all)"      echo "                             (recognized groups: basic, tutorials)"
23        echo "                             (DEF=\"\" which test all)"
24      echo "  (-b|-bash) STRING        preferred location of a \"bash\" or"      echo "  (-b|-bash) STRING        preferred location of a \"bash\" or"
25      echo "                             Bourne-compatible \"sh\" shell"      echo "                             Bourne-compatible \"sh\" shell"
26      echo "                             (DEF=\"\" for \"bash\")"      echo "                             (DEF=\"\" for \"bash\")"
# Line 90  testoutput_for_prop() Line 91  testoutput_for_prop()
91  {  {
92      # testoutput_for_prop dir s1 label subdir extension      # testoutput_for_prop dir s1 label subdir extension
93      #      #
94      #  compares files in $dir/$subdir/output.txt and $dir/results/output.txt      #  compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt
95      #  using search strings s1 and text label      #  using search strings s1 and text label
96    
97      if [ $debug -gt 0 ]; then      if [ $debug -gt 0 ]; then
98          echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2          echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2
99      fi      fi
100      if [ -r $1/$4/output.txt ]; then      if [ -r $1/$4/$OUTPUTFILE ]; then
101          grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt          grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
102          lncntA=`wc -l tmp1.txt | awk '{print $1}' `          lncntA=`wc -l tmp1.txt | awk '{print $1}' `
103          if [ $lncntA -lt 3 ]; then          if [ $lncntA -lt 3 ]; then
104              if [ $verbose -gt 0 ]; then              if [ $verbose -gt 0 ]; then
# Line 106  testoutput_for_prop() Line 107  testoutput_for_prop()
107              return 99              return 99
108          fi          fi
109      else      else
110          echo testoutput_for_prop: output.txt from model run was not readable 1>&2          echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2
111          return 99          return 99
112      fi      fi
113      if [ $debug -gt 0 ]; then      if [ $debug -gt 0 ]; then
114          echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2          echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2
115      fi      fi
116      grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt      grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt
117      lncntB=`wc -l tmp2.txt | awk '{print $1}' `      lncntB=`wc -l tmp2.txt | awk '{print $1}' `
118      if [ $lncntB -lt 3 ]; then      if [ $lncntB -lt 3 ]; then
119          if [ $verbose -gt 0 ]; then          if [ $verbose -gt 0 ]; then
# Line 128  testoutput_for_prop() Line 129  testoutput_for_prop()
129      fi      fi
130      has_nan=`cat tmp1.txt | grep -i nan | wc -l`      has_nan=`cat tmp1.txt | grep -i nan | wc -l`
131      if [ $has_nan -gt 0  ] ; then      if [ $has_nan -gt 0  ] ; then
132          echo testoutput_for_prop: output.txt contains $has_nan NaN values  1>&2          echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values  1>&2
133          return 99          return 99
134      fi      fi
135      has_inf=`cat tmp1.txt | grep -i inf | wc -l`      has_inf=`cat tmp1.txt | grep -i inf | wc -l`
136      if [ $has_inf -gt 0  ] ; then      if [ $has_inf -gt 0  ] ; then
137          echo testoutput_for_prop: output.txt contains $has_inf Inf values  1>&2          echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values  1>&2
138          return 99          return 99
139      fi      fi
140      if [ $debug -gt 0 ]; then      if [ $debug -gt 0 ]; then
# Line 183  dashnum() Line 184  dashnum()
184  testoutput_ad()  testoutput_ad()
185  {  {
186      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
187      grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt      grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt
188      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
189      grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt      grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt
190      join t05.txt t15.txt > t5.txt      join t05.txt t15.txt > t5.txt
191      join t06.txt t16.txt > t6.txt      join t06.txt t16.txt > t6.txt
192      echo "-1" >> t5.txt      echo "-1" >> t5.txt
# Line 340  makeclean() Line 341  makeclean()
341      else      else
342          (          (
343              cd $1;              cd $1;
344              #if test -e output.txt ; then rm -f output.txt ; fi              #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
345              if test -r Makefile ; then              if test -r Makefile ; then
346                  printf 'clean build-dir: make Clean ... ' 2>&1                  printf 'clean build-dir: make Clean ... ' 2>&1
347                  $MAKE Clean >> make.log 2>&1                  $MAKE Clean >> make.log 2>&1
# Line 560  runmodel() Line 561  runmodel()
561              tail run.log              tail run.log
562              echo successful 1>&2              echo successful 1>&2
563              # === Reduce the size of the testing emails!              # === Reduce the size of the testing emails!
564              # if test "x$ADM" = x ; then              #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
             #   cp output.txt $CDIR"/output.txt"  
             # else  
             #   cp output_adm.txt $CDIR"/output_adm.txt"  
             # fi  
565              if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi              if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
566              return 0              return 0
567          else          else
# Line 840  if test "x$TESTDIRS" = x ; then Line 837  if test "x$TESTDIRS" = x ; then
837      else      else
838          TESTDIRS=`scandirs results`          TESTDIRS=`scandirs results`
839      fi      fi
840    else
841        #- expand group of experiments:
842        LIST=" "
843        for xx in $TESTDIRS
844        do
845          case $xx in
846            'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
847                     LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
848                     LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
849                    ;;
850            'tutorials')
851                     LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
852            *)       LIST=${LIST}" "$xx ;;
853          esac
854        done
855        #echo 'LIST='${LIST}'<'
856        #- remove duplicate and non-directory:
857        TESTDIRS=" "
858        for xx in $LIST
859        do
860            if test -d $xx ; then
861                yy=`echo $TESTDIRS | grep -c $xx`
862                if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
863            else
864                echo " -- skip \"$xx\" : not a directory !"
865            fi
866        done
867  fi  fi
868    #echo 'TESTDIRS='${TESTDIRS}'<'
869    
870  if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then  if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
871      OPTFILE=$MITGCM_OF      OPTFILE=$MITGCM_OF
# Line 854  else Line 879  else
879      OUTPUTFILE="output.txt"      OUTPUTFILE="output.txt"
880  fi  fi
881    
 if test "x$ADM" = xt -a "x$COMMAND" = x ; then  
     COMMAND="./$EXECUTABLE > $OUTPUTFILE"  
 fi  
   
882  if test "x$COMMAND" = x ; then  if test "x$COMMAND" = x ; then
883      COMMAND="./$EXECUTABLE > $OUTPUTFILE"      COMMAND="./$EXECUTABLE > $OUTPUTFILE"
884  fi  fi
885    if test "x$MPI" = xt ; then
886        OUTPUTFILE="STDOUT.0000"
887    fi
888    
889  #echo "OK"  #echo "OK"
890  echo "OK (COMMAND= $COMMAND )"  echo "OK (COMMAND= $COMMAND )"
# Line 1034  for dir in $TESTDIRS ; do Line 1058  for dir in $TESTDIRS ; do
1058          #echo "ex_run_dirs='$ex_run_dirs'"          #echo "ex_run_dirs='$ex_run_dirs'"
1059          for exd in $ex_run_dirs ; do          for exd in $ex_run_dirs ; do
1060              name=`echo $exd | sed -e 's/input.//g'`              name=`echo $exd | sed -e 's/input.//g'`
1061              outf="$dir/results/output.txt.$name"              outf="$dir/results/output.$name.txt"
1062              if test -f $outf -a -r $outf ; then              if test -f $outf -a -r $outf ; then
1063                  if test "x$MULTI_THREAD" = "xt" ; then                  if test "x$MULTI_THREAD" = "xt" ; then
1064                      if test -r $dir"/"$exd"/eedata.mth" ; then                      if test -r $dir"/"$exd"/eedata.mth" ; then
# Line 1077  for dir in $TESTDIRS ; do Line 1101  for dir in $TESTDIRS ; do
1101              && makemodel $dir/$builddir && make=Y \              && makemodel $dir/$builddir && make=Y \
1102              && linkdata $dir/$rundir $input_dirs \              && linkdata $dir/$rundir $input_dirs \
1103              && runmodel $dir/$rundir && run=Y \              && runmodel $dir/$rundir && run=Y \
1104              && results=`testoutput $dir $rundir`              && results=`testoutput $dir $rundir "txt"`
1105      fi      fi
1106            
1107      echo      echo
# Line 1102  for dir in $TESTDIRS ; do Line 1126  for dir in $TESTDIRS ; do
1126              run_clean $dir/tr_run.$ex              run_clean $dir/tr_run.$ex
1127              linkdata $dir/tr_run.$ex input.$ex input              linkdata $dir/tr_run.$ex input.$ex input
1128              runmodel $dir/tr_run.$ex && run=Y \              runmodel $dir/tr_run.$ex && run=Y \
1129                  && results=`testoutput $dir tr_run.$ex "."$ex`                  && results=`testoutput $dir tr_run.$ex ${ex}".txt"`
1130              fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`              fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1131              fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`              fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1132              fres="$fres.$ex"              fres="$fres.$ex"
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