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revision 1.83 by jmc, Wed Jul 5 22:39:57 2006 UTC revision 1.90 by ce107, Wed Jan 31 21:28:34 2007 UTC
# Line 15  usage() Line 15  usage()
15      echo "  (-mpi)                   compile and run using MPI"      echo "  (-mpi)                   compile and run using MPI"
16      echo "  (-ieee|-noieee)          if possible, use IEEE compiler flags"      echo "  (-ieee|-noieee)          if possible, use IEEE compiler flags"
17      echo "                             (DEF=\"-ieee\")"      echo "                             (DEF=\"-ieee\")"
18      echo "  (-optfile=|-of=)STRING   list of optfiles to use"      echo "  (-of=|-optfile=)STRING   list of optfiles to use"
19      echo "  (-a|-addr) STRING        list of email recipients"      echo "  (-a|-addr) STRING        list of email recipients"
20      echo "                             (DEF=\"edhill@mitgcm.org\")"      echo "                             (DEF=\"edhill@mitgcm.org\")"
21      echo "  (-t|-tdir) STRING        list of test dirs to use"      echo "  (-t|-tdir) STRING        list of group and/or exp. dirs to test"
22      echo "                             (DEF=\"\" which builds all)"      echo "                             (recognized groups: basic, tutorials)"
23        echo "                             (DEF=\"\" which test all)"
24        echo "  (-skd|-skipdir) STRING   list of exp. dirs to skip"
25        echo "                             (DEF=\"\" which test all)"
26      echo "  (-b|-bash) STRING        preferred location of a \"bash\" or"      echo "  (-b|-bash) STRING        preferred location of a \"bash\" or"
27      echo "                             Bourne-compatible \"sh\" shell"      echo "                             Bourne-compatible \"sh\" shell"
28      echo "                             (DEF=\"\" for \"bash\")"      echo "                             (DEF=\"\" for \"bash\")"
# Line 30  usage() Line 33  usage()
33      echo "                             (DEF=\"make\")"      echo "                             (DEF=\"make\")"
34      echo "  (-odir) STRING           used to build output directory name"      echo "  (-odir) STRING           used to build output directory name"
35      echo "                             (DEF=\"hostname\")"      echo "                             (DEF=\"hostname\")"
36      echo "  (-ptracers|-ptr) STRING  specify which ptracers to test"      echo "  (-ptr|-ptracers) STRING  specify which ptracers to test"
37      echo "                             (DEF=\"1 2 3 4 5\")"      echo "                             (DEF=\"1 2 3 4 5\")"
38      echo "  (-j) JOBS                use \"make -j JOBS\" for parallel builds"      echo "  (-j) JOBS                use \"make -j JOBS\" for parallel builds"
39      echo "  (-clean)                 *ONLY* run \"make CLEAN\""      echo "  (-clean)                 *ONLY* run \"make CLEAN\""
# Line 39  usage() Line 42  usage()
42      echo "  (-noclean|-nc)           skip the \"make clean\" stage"      echo "  (-noclean|-nc)           skip the \"make clean\" stage"
43      echo "  (-nodepend|-nd)          skip the \"make depend\" stage"      echo "  (-nodepend|-nd)          skip the \"make depend\" stage"
44      echo "  (-deldir|-dd)            on success, delete the output directory"      echo "  (-deldir|-dd)            on success, delete the output directory"
45        echo "  (-ts)                    provide timing information per timestep"
46        echo "  (-papis)                 provide MFlop/s per timestep using PAPI"
47        echo "  (-pcls)                  provide MFlop/s per timestep using PCL"
48      echo      echo
49      echo "and where STRING can be a whitespace-delimited list"      echo "and where STRING can be a whitespace-delimited list"
50      echo "such as:"      echo "such as:"
# Line 90  testoutput_for_prop() Line 96  testoutput_for_prop()
96  {  {
97      # testoutput_for_prop dir s1 label subdir extension      # testoutput_for_prop dir s1 label subdir extension
98      #      #
99      #  compares files in $dir/$subdir/output.txt and $dir/results/output.txt      #  compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt
100      #  using search strings s1 and text label      #  using search strings s1 and text label
101    
102      if [ $debug -gt 0 ]; then      if [ $debug -gt 0 ]; then
103          echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2          echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2
104      fi      fi
105      if [ -r $1/$4/output.txt ]; then      if [ -r $1/$4/$OUTPUTFILE ]; then
106          grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt          grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
107          lncntA=`wc -l tmp1.txt | awk '{print $1}' `          lncntA=`wc -l tmp1.txt | awk '{print $1}' `
108          if [ $lncntA -lt 3 ]; then          if [ $lncntA -lt 3 ]; then
109              if [ $verbose -gt 0 ]; then              if [ $verbose -gt 0 ]; then
# Line 106  testoutput_for_prop() Line 112  testoutput_for_prop()
112              return 99              return 99
113          fi          fi
114      else      else
115          echo testoutput_for_prop: output.txt from model run was not readable 1>&2          echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2
116          return 99          return 99
117      fi      fi
118      if [ $debug -gt 0 ]; then      if [ $debug -gt 0 ]; then
119          echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2          echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2
120      fi      fi
121      grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt      grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt
122      lncntB=`wc -l tmp2.txt | awk '{print $1}' `      lncntB=`wc -l tmp2.txt | awk '{print $1}' `
123      if [ $lncntB -lt 3 ]; then      if [ $lncntB -lt 3 ]; then
124          if [ $verbose -gt 0 ]; then          if [ $verbose -gt 0 ]; then
# Line 128  testoutput_for_prop() Line 134  testoutput_for_prop()
134      fi      fi
135      has_nan=`cat tmp1.txt | grep -i nan | wc -l`      has_nan=`cat tmp1.txt | grep -i nan | wc -l`
136      if [ $has_nan -gt 0  ] ; then      if [ $has_nan -gt 0  ] ; then
137          echo testoutput_for_prop: output.txt contains $has_nan NaN values  1>&2          echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values  1>&2
138          return 99          return 99
139      fi      fi
140      has_inf=`cat tmp1.txt | grep -i inf | wc -l`      has_inf=`cat tmp1.txt | grep -i inf | wc -l`
141      if [ $has_inf -gt 0  ] ; then      if [ $has_inf -gt 0  ] ; then
142          echo testoutput_for_prop: output.txt contains $has_inf Inf values  1>&2          echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values  1>&2
143          return 99          return 99
144      fi      fi
145      if [ $debug -gt 0 ]; then      if [ $debug -gt 0 ]; then
# Line 183  dashnum() Line 189  dashnum()
189  testoutput_ad()  testoutput_ad()
190  {  {
191      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
192      grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt      grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt
193      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt      grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
194      grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt      grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt
195      join t05.txt t15.txt > t5.txt      join t05.txt t15.txt > t5.txt
196      join t06.txt t16.txt > t6.txt      join t06.txt t16.txt > t6.txt
197      echo "-1" >> t5.txt      echo "-1" >> t5.txt
# Line 315  genmakemodel() Line 321  genmakemodel()
321              if test "x$MPI" = xt ; then              if test "x$MPI" = xt ; then
322                  command="$command -mpi"                  command="$command -mpi"
323              fi              fi
324                if test "x$TS" = xt ; then
325                    command="$command -ts"
326                fi
327                if test "x$PAPIS" = xt ; then
328                    command="$command -papis"
329                else
330                if test "x$PCLS" = xt ; then
331                    command="$command -pcls"
332                fi
333                fi
334              printf 'genmake ... ' 1>&2              printf 'genmake ... ' 1>&2
335              $command > make.log 2>&1              $command > make.log 2>&1
336              RETVAL=$?              RETVAL=$?
# Line 340  makeclean() Line 356  makeclean()
356      else      else
357          (          (
358              cd $1;              cd $1;
359              #if test -e output.txt ; then rm -f output.txt ; fi              #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
360              if test -r Makefile ; then              if test -r Makefile ; then
361                  printf 'clean build-dir: make Clean ... ' 2>&1                  printf 'clean build-dir: make Clean ... ' 2>&1
362                  $MAKE Clean >> make.log 2>&1                  $MAKE Clean >> make.log 2>&1
# Line 535  runmodel() Line 551  runmodel()
551          printf 'runmodel in %s ...' $1 1>&2          printf 'runmodel in %s ...' $1 1>&2
552          # make output.txt          # make output.txt
553          echo          echo
         rm -f run.log  
554          if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then          if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
555              echo " link" $EXECUTABLE "from dir ../"$builddir > run.log              echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
556              ln -sf "../"$builddir"/"$EXECUTABLE .              ln -sf "../"$builddir"/"$EXECUTABLE .
         else  
             touch run.log  
557          fi          fi
558          if test ! -x $EXECUTABLE ; then          if test ! -x $EXECUTABLE ; then
559                    rm -f run.log ; touch run.log
560                    if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
561                  echo " no executable:" $EXECUTABLE >> run.log                  echo " no executable:" $EXECUTABLE >> run.log
562                  RETVAL=8                  RETVAL=8
563                    ENDVAL=-1
564          else          else
565              if test $OUTPUTFILE -ot $EXECUTABLE ; then              if test $OUTPUTFILE -ot $EXECUTABLE ; then
566                    rm -f run.log ; touch run.log
567                    if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
568                  ( eval $COMMAND ) >> run.log 2>&1                  ( eval $COMMAND ) >> run.log 2>&1
569                  RETVAL=$?                  RETVAL=$?
570              else              else
                 echo " $OUTPUTFILE is up to date " >> run.log 2>&1  
571                  RETVAL=0                  RETVAL=0
572                    if test -f run.log ; then
573                        if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
574                        echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
575                    else
576                        touch run.log
577                        if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
578                        echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
579                        echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
580                    fi
581              fi              fi
582                ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
583          fi          fi
584          # echo "COMMAND='$COMMAND'"          rm -f run.log_00
585          # echo "pwd='"`pwd`"'"          #if test "x$RETVAL" = x0 ; then
586          if test "x$RETVAL" = x0 ; then          if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
587              tail run.log              tail run.log
588              echo successful 1>&2              echo successful 1>&2
589              # === Reduce the size of the testing emails!              # === Reduce the size of the testing emails!
590              # if test "x$ADM" = x ; then              #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
             #   cp output.txt $CDIR"/output.txt"  
             # else  
             #   cp output_adm.txt $CDIR"/output_adm.txt"  
             # fi  
591              if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi              if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
592              return 0              return 0
593          else          else
594              tail run.log              tail run.log
595              echo failed 1>&2              echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
596              cp run.log $CDIR"/run.log"              cp run.log $CDIR"/run.log"
597              if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi              if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
598              return 1              return 1
# Line 643  formatresults() Line 666  formatresults()
666            
667  }  }
668    
 show_help()  
 {  
     cat - << EOF  
 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]  
   
  -help|-h      Show this help message  
  -quiet     Reduce the amount of output  
  -verbose   Produce copious amounts of output  
  -debug     Produce even more output which will mean nothing to most  
  -force     Do "make CLEAN" before compiling. This forces a complete rebuild.  
  -clean     Do "make CLEAN" after compiling and testing.  
  -cleanup   Aggresively removes all model output, executables and object files  
             and then exits. Use with care.  
   
 Normal usage:  
  $0 *       Configure, compile, run and analyze in all experiment directories  
 EOF  
 }  
   
669  scandirs()  scandirs()
670  {  {
671      if [ $# -eq 1 ]; then      if [ $# -eq 1 ]; then
# Line 701  BASH= Line 705  BASH=
705  OPTFILE=NONE  OPTFILE=NONE
706  ADDRESSES=  ADDRESSES=
707  TESTDIRS=  TESTDIRS=
708    SKIPDIRS=
709  MPACKDIR="../tools/mpack-1.6"  MPACKDIR="../tools/mpack-1.6"
710  HAVE_MPACK=  HAVE_MPACK=
711  MPACK="$MPACKDIR/mpack"  MPACK="$MPACKDIR/mpack"
# Line 756  for ac_option ; do Line 761  for ac_option ; do
761          -tdir=* | --tdir=*)          -tdir=* | --tdir=*)
762              TESTDIRS=$ac_optarg ;;              TESTDIRS=$ac_optarg ;;
763    
764            -skipdir | --skipdir | -skd | --skd)
765                ac_prev=SKIPDIRS ;;
766            -skipdir=* | --skipdir=*)
767                SKIPDIRS=$ac_optarg ;;
768    
769          -bash | --bash | -b | --b)          -bash | --bash | -b | --b)
770              ac_prev=BASH ;;              ac_prev=BASH ;;
771          -bash=* | --bash=*)          -bash=* | --bash=*)
# Line 814  for ac_option ; do Line 824  for ac_option ; do
824    
825          -deldir | -dd) DELDIR=t ;;          -deldir | -dd) DELDIR=t ;;
826    
827            -ts) TS=t;;
828    
829            -papis) PAPIS=t;;
830    
831            -pcls) PCL=t;;
832    
833          -*)          -*)
834              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
835              usage              usage
# Line 836  fi Line 852  fi
852    
853  if test "x$TESTDIRS" = x ; then  if test "x$TESTDIRS" = x ; then
854      if test "x$ADM" = xt ; then      if test "x$ADM" = xt ; then
855          TESTDIRS=`scandirs results_ad`          LIST=`scandirs results_ad`
856      else      else
857          TESTDIRS=`scandirs results`          LIST=`scandirs results`
858      fi      fi
859    else
860        #- expand group of experiments:
861        LIST=" "
862        for xx in $TESTDIRS
863        do
864          case $xx in
865            'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
866                     LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
867                     LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
868                    ;;
869            'tutorials')
870                     LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
871            *)       LIST=${LIST}" "$xx ;;
872          esac
873        done
874  fi  fi
875    #echo 'LIST='${LIST}'<'
876    #- skip dirs, remove duplicate and non-directory:
877    TESTDIRS=" "
878    count=0
879    for xx in $LIST
880    do
881        yy=`echo $SKIPDIRS | grep -c $xx`
882        if test $yy = 0 ; then
883            if test -d $xx ; then
884                yy=`echo $TESTDIRS | grep -c $xx`
885                if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
886            else count=1 ;
887                echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
888            fi
889        else
890            if test $count = 1 ; then echo -n ", \"$xx\""
891            else count=1 ; echo "" ;  echo -n " skip: \"$xx\""
892            fi
893        fi
894    done
895    if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
896    #echo 'TESTDIRS='${TESTDIRS}'<'
897    
898  if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then  if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
899      OPTFILE=$MITGCM_OF      OPTFILE=$MITGCM_OF
# Line 854  else Line 907  else
907      OUTPUTFILE="output.txt"      OUTPUTFILE="output.txt"
908  fi  fi
909    
 if test "x$ADM" = xt -a "x$COMMAND" = x ; then  
     COMMAND="./$EXECUTABLE > $OUTPUTFILE"  
 fi  
   
910  if test "x$COMMAND" = x ; then  if test "x$COMMAND" = x ; then
911      COMMAND="./$EXECUTABLE > $OUTPUTFILE"      COMMAND="./$EXECUTABLE > $OUTPUTFILE"
912  fi  fi
913    if test "x$MPI" = xt ; then
914        OUTPUTFILE="STDOUT.0000"
915    fi
916    
917  #echo "OK"  #echo "OK"
918  echo "OK (COMMAND= $COMMAND )"  echo "OK (COMMAND= $COMMAND )"
# Line 1034  for dir in $TESTDIRS ; do Line 1086  for dir in $TESTDIRS ; do
1086          #echo "ex_run_dirs='$ex_run_dirs'"          #echo "ex_run_dirs='$ex_run_dirs'"
1087          for exd in $ex_run_dirs ; do          for exd in $ex_run_dirs ; do
1088              name=`echo $exd | sed -e 's/input.//g'`              name=`echo $exd | sed -e 's/input.//g'`
1089              outf="$dir/results/output.txt.$name"              outf="$dir/results/output.$name.txt"
1090              if test -f $outf -a -r $outf ; then              if test -f $outf -a -r $outf ; then
1091                  if test "x$MULTI_THREAD" = "xt" ; then                  if test "x$MULTI_THREAD" = "xt" ; then
1092                      if test -r $dir"/"$exd"/eedata.mth" ; then                      if test -r $dir"/"$exd"/eedata.mth" ; then
# Line 1077  for dir in $TESTDIRS ; do Line 1129  for dir in $TESTDIRS ; do
1129              && makemodel $dir/$builddir && make=Y \              && makemodel $dir/$builddir && make=Y \
1130              && linkdata $dir/$rundir $input_dirs \              && linkdata $dir/$rundir $input_dirs \
1131              && runmodel $dir/$rundir && run=Y \              && runmodel $dir/$rundir && run=Y \
1132              && results=`testoutput $dir $rundir`              && results=`testoutput $dir $rundir "txt"`
1133      fi      fi
1134            
1135      echo      echo
# Line 1102  for dir in $TESTDIRS ; do Line 1154  for dir in $TESTDIRS ; do
1154              run_clean $dir/tr_run.$ex              run_clean $dir/tr_run.$ex
1155              linkdata $dir/tr_run.$ex input.$ex input              linkdata $dir/tr_run.$ex input.$ex input
1156              runmodel $dir/tr_run.$ex && run=Y \              runmodel $dir/tr_run.$ex && run=Y \
1157                  && results=`testoutput $dir tr_run.$ex "."$ex`                  && results=`testoutput $dir tr_run.$ex ${ex}".txt"`
1158              fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`              fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1159              fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`              fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1160              fres="$fres.$ex"              fres="$fres.$ex"
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