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Revision 1.93 - (show annotations) (download)
Wed Sep 5 16:09:31 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.92: +42 -41 lines
cosmetic changes: rename some functions to make it easier to grep for

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.92 2007/09/05 01:46:37 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-of=|-optfile=)STRING list of optfiles to use"
19 echo " (-a|-addr) STRING list of email recipients"
20 echo " (DEF=\"edhill@mitgcm.org\")"
21 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
22 echo " (recognized groups: basic, tutorials)"
23 echo " (DEF=\"\" which test all)"
24 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
25 echo " (DEF=\"\" which test all)"
26 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
27 echo " Bourne-compatible \"sh\" shell"
28 echo " (DEF=\"\" for \"bash\")"
29 echo " (-adm|-ad) perform an adjoint run"
30 echo " (-command) STRING command to run"
31 echo " (DEF=\"make output.txt\")"
32 echo " (-m|-make) STRING command to use for \"make\""
33 echo " (DEF=\"make\")"
34 echo " (-odir) STRING used to build output directory name"
35 echo " (DEF=\"hostname\")"
36 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
37 echo " (DEF=\"1 2 3 4 5\")"
38 echo " (-match) NUMBER Matching Criteria (number of digits)"
39 echo " (DEF=\"12\")"
40 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
41 echo " (-clean) *ONLY* run \"make CLEAN\""
42 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
43 echo " (-nogenmake|-ng) skip the genmake stage"
44 echo " (-noclean|-nc) skip the \"make clean\" stage"
45 echo " (-nodepend|-nd) skip the \"make depend\" stage"
46 echo " (-deldir|-dd) on success, delete the output directory"
47 echo " (-ts) provide timing information per timestep"
48 echo " (-papis) provide MFlop/s per timestep using PAPI"
49 echo " (-pcls) provide MFlop/s per timestep using PCL"
50 echo
51 echo "and where STRING can be a whitespace-delimited list"
52 echo "such as:"
53 echo
54 echo " -t 'exp0 exp2 exp3' "
55 echo " -addr='abc@123.com testing@home.org'"
56 echo
57 echo "provided that the expression is properly quoted within the current"
58 echo "shell (note the use of single quotes to protect white space)."
59 echo
60 exit 1
61 }
62
63 # build the mpack utility
64 build_mpack()
65 {
66 printf "building the mpack utility... "
67 if test ! -x "$MPACKDIR/mpack" ; then
68 if test ! -d $MPACKDIR ; then
69 echo
70 echo "Error: can't find \"$MPACKDIR\""
71 echo " are you sure this program is being run in the correct "
72 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
73 echo
74 HAVE_MPACK=f
75 fi
76 printf "building mpack... "
77 if test "x$CC" = x ; then
78 export CC=cc
79 fi
80 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
81 RETVAL=$?
82 if test "x$RETVAL" != x0 ; then
83 echo
84 echo "Error building the mpack tools at: $MPACK_DIR"
85 echo
86 HAVE_MPACK=f
87 else
88 rm -f tr_build_mpack.out
89 HAVE_MPACK=t
90 fi
91 else
92 HAVE_MPACK=t
93 fi
94 echo "OK"
95 }
96
97 testoutput_var()
98 {
99 # testoutput_var dir s1 label subdir extension
100 #
101 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
102 # with same output from reference file $dir/results/output.$extension
103 # using search strings s1 and text label
104
105 if [ $debug -gt 0 ]; then
106 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
107 fi
108 if [ -r $1/$4/$OUTPUTFILE ]; then
109 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
110 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
111 if [ $lncntA -lt 3 ]; then
112 if [ $verbose -gt 0 ]; then
113 echo Not enough lines of output when searching for "$2" 1>&2
114 fi
115 return 99
116 fi
117 else
118 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
119 return 99
120 fi
121 if [ $debug -gt 0 ]; then
122 echo testoutput_var: grep "$2" $1/results/output.$5 1>&2
123 fi
124 grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt
125 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
126 if [ $lncntB -lt 3 ]; then
127 if [ $verbose -gt 0 ]; then
128 echo Not enough lines of output when searching for "$2" 1>&2
129 fi
130 return 99
131 fi
132 if [ $lncntA -ne $lncntB ]; then
133 if [ $verbose -gt 0 ]; then
134 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
135 fi
136 return 99
137 fi
138 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
139 if [ $has_nan -gt 0 ] ; then
140 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
141 return 99
142 fi
143 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
144 if [ $has_inf -gt 0 ] ; then
145 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
146 return 99
147 fi
148 if [ $debug -gt 0 ]; then
149 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
150 fi
151 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
152 if [ $debug -gt 0 ]; then
153 echo testoutput_var: compare_lines 1>&2
154 fi
155 if [ $verbose -gt 1 ]; then
156 cat tmp3.txt 1>&2
157 fi
158 echo "-1" >> tmp3.txt
159 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
160 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
161 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
162 if [ $digits_of_similarity -eq 99 ]; then
163 if [ $verbose -gt 0 ]; then
164 echo testoutput_var: No comparison was available for \"$2\" 1>&2
165 fi
166 digits_of_similarity=99
167 else
168 if [ $verbose -gt 0 ]; then
169 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
170 fi
171 fi
172 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
173
174 return $digits_of_similarity
175 }
176
177 dashnum()
178 {
179 # dashnum n1 n2 n3 ...
180 #
181 # print numbers using %3i format or "--" if number = 99
182
183 for num in $@ ; do
184 if [ $num = 99 ]; then
185 printf ' --'
186 else
187 printf '%3i' $num
188 fi
189 done
190 }
191
192 testoutput_ad()
193 {
194 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
195 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt
196 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
197 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt
198 join t05.txt t15.txt > t5.txt
199 join t06.txt t16.txt > t6.txt
200 echo "-1" >> t5.txt
201 echo "-1" >> t6.txt
202 digits_5=`./tr_cmpnum < t5.txt`
203 digits_6=`./tr_cmpnum < t6.txt`
204 dashnum $digits_5 $digits_6
205 rm -f t[01][56].txt t[56].txt
206 }
207
208 check_for_add_mon_output()
209 {
210 # Check for additional types of monitor output
211 if test "x$1" = x ; then
212 return
213 fi
214
215 for ii in $PTRACERS_NUM ; do
216 eval "HAVE_PTR0"$ii"=f"
217 done
218
219 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
220 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
221 for ii in $PTRACERS_NUM ; do
222 for jj in $ptr_add ; do
223 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
224 tst=`grep $name $1 | wc -l | awk '{print $1}'`
225 if test ! "x$tst" = x0 ; then
226 eval "HAVE_PTR0"$ii"=t"
227 fi
228 done
229 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
230 done
231 }
232
233 testoutput_run()
234 {
235 # testoutput_run directory subdir extension
236 #
237 # test output from 1 run in "directory"
238 if test "x$ADM" = x ; then
239 if [ $debug -gt 0 ]; then
240 echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2
241 fi
242 testoutput_var $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
243 if [ $debug -gt 0 ]; then
244 echo testoutput_run: cg2dres=$cg2dres 1>&2
245 fi
246 testoutput_var $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
247 testoutput_var $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
248 testoutput_var $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
249 testoutput_var $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
250 testoutput_var $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
251 testoutput_var $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
252 testoutput_var $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
253 testoutput_var $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
254 testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
255 testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
256 testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
257 testoutput_var $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
258 testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
259 testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
260 testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
261 testoutput_var $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
262
263 # This is for PTRACERS
264 for ii in $PTRACERS_NUM ; do
265 eval `echo "p0"$ii"_min=99"`
266 eval `echo "p0"$ii"_max=99"`
267 eval `echo "p0"$ii"_mean=99"`
268 eval `echo "p0"$ii"_sd=99"`
269 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
270 #echo 'tst = '$tst
271 if test "x$tst" = xt ; then
272 a="trcstat_ptracer0"
273 testoutput_var $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
274 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
275 testoutput_var $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
276 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
277 testoutput_var $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
278 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
279 testoutput_var $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
280 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
281 fi
282 done
283
284 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
285 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
286 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
287 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
288 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
289 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
290 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
291
292 eval "dashnum $allargs"
293
294 else
295 testoutput_ad $1 $2 "precision_grdchk_result"
296 fi
297 }
298
299 genmakemodel()
300 {
301 # genmakemodel directory
302 if test "x$NOGENMAKE" = xt ; then
303 echo "genmake skipped!"
304 else
305 if test "x$BASH" = x ; then
306 GENMAKE2="../../../tools/genmake2"
307 else
308 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
309 fi
310 (
311 cd $1;
312 command="$GENMAKE2 -ds -m $MAKE"
313 if test "x$ADM" = x ; then
314 command="$command --mods=../code"
315 else
316 command="$command --mods=../code_ad"
317 fi
318 if test "x$OPTFILE" != xNONE ; then
319 command="$command --optfile=$OPTFILE"
320 fi
321 if test "x$IEEE" != x ; then
322 command="$command -ieee"
323 fi
324 if test "x$MPI" = xt ; then
325 command="$command -mpi"
326 fi
327 if test "x$TS" = xt ; then
328 command="$command -ts"
329 fi
330 if test "x$PAPIS" = xt ; then
331 command="$command -papis"
332 else
333 if test "x$PCLS" = xt ; then
334 command="$command -pcls"
335 fi
336 fi
337 printf 'genmake ... ' 1>&2
338 $command > make.log 2>&1
339 RETVAL=$?
340 # Reduce the size of the testing emails!
341 head -100 Makefile > $CDIR/Makefile_head
342 if test "x$RETVAL" != x0 ; then
343 tail make.log
344 echo "genmakemodel: genmake failed" 1>&2
345 cp genmake_* make.log $CDIR
346 return 1
347 else
348 echo "successful" 1>&2
349 fi
350 )
351 fi
352 }
353
354 makeclean()
355 {
356 # makeclean directory
357 if test "x$NOCLEAN" = xt ; then
358 echo "make Clean skipped!"
359 else
360 (
361 cd $1;
362 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
363 if test -r Makefile ; then
364 printf 'clean build-dir: make Clean ... ' 2>&1
365 $MAKE Clean >> make.log 2>&1
366 RETVAL=$?
367 if test "x$RETVAL" != x0 ; then
368 tail make.log
369 echo "makeclean: \"make Clean\" failed" 1>&2
370 cp make.log $CDIR"/make.log"
371 return 1
372 fi
373 fi
374 echo successful 1>&2
375 exit 0
376 )
377 fi
378 }
379
380 run_clean()
381 {
382 # run_clean directory
383 if test "x$NOCLEAN" = xt ; then
384 echo "run_clean skipped!"
385 else
386 (
387 cd $1;
388 printf 'clean run-dir ... ' 2>&1
389 # part of what is done after "make clean" when doing "make CLEAN"
390 find . -name "*.meta" -exec rm {} \;
391 find . -name "*.data" -exec rm {} \;
392 find . -name "fort.*" -exec rm {} \;
393 find . -type l -exec rm {} \;
394 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
395 rm -rf mnc_test_*
396 echo successful 1>&2
397 exit 0
398 )
399 fi
400 }
401
402 makedependmodel()
403 {
404 # makedependmodel directory
405 if test "x$NODEPEND" = xt ; then
406 echo "make depend skipped!"
407 else
408 (
409 cd $1;
410 printf 'make depend ... ' 1>&2
411 $MAKE depend >> make.log 2>&1
412 RETVAL=$?
413 if test "x$RETVAL" != x0 ; then
414 tail make.log
415 echo "makedependmodel: make depend failed" 1>&2
416 cp make.log $CDIR"/make.log"
417 return 1
418 else
419 echo successful 1>&2
420 fi
421 )
422 fi
423 }
424
425 makemodel()
426 {
427 # makemodel directory
428 (
429 cd $1;
430 if test -r Makefile ; then
431 printf 'make ... ' 1>&2
432 if test "x$ADM" = x ; then
433 if test "x$JOBS" = x ; then
434 $MAKE >> make.log 2>&1
435 else
436 $MAKE -j $JOBS >> make.log 2>&1
437 fi
438 else
439 $MAKE adall >> make.log 2>&1
440 fi
441 RETVAL=$?
442 if test "x$RETVAL" != x0 ; then
443 tail make.log
444 echo failed 1>&2
445 cp make.log $CDIR"/make.log"
446 return 1
447 else
448 echo successful 1>&2
449 fi
450 fi
451 )
452 }
453
454 symlink_mpifiles()
455 {
456 # Put special links so that MPI specific files are used
457 # This MUST be invoked between makeclean and makelinks because
458 # the Makefile will link to non-mpi files by default
459
460 dir=$1
461 code_dir=$2
462 BUILD_DIR=$dir/$3
463 CODE_DIR=$dir/$code_dir
464
465 # These are files that should replace their counter-part when using -mpi
466 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
467
468 # Is this an MPI run?
469 if test "x$MPI" = xt ; then
470 # YES: We symbolically link these files to the build
471 # dir so long as there is no real file in place
472 for ii in $MPI_FILES ; do
473 i=`echo $ii | sed 's:^\./::'`
474 name=`echo $i | sed 's:_mpi::' `
475 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
476 RETVAL=$?
477 if test "x$RETVAL" != x0 ; then
478 if ! test -f $BUILD_DIR/$i ; then
479 #echo Linking $name to $i
480 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
481 fi
482 fi
483 done
484 else
485 # NO: We undo any _mpi symbolically linked files
486 for ii in $MPI_FILES ; do
487 i=`echo $ii | sed 's:^\./::'`
488 name=`echo $i | sed 's:_mpi::' `
489 if test -L $BUILD_DIR/$name ; then
490 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
491 RETVAL=$?
492 if test "x$RETVAL" = x0 ; then
493 #echo Un-linking $name from $linktarg
494 rm -f $BUILD_DIR/$name
495 fi
496 fi
497 done
498 fi
499
500 }
501
502 linkdata()
503 {
504 # linkdata run_dir input_dir_1 input_dir_2 ...
505 #
506 # symbolically link data files to run directory
507 if test -d $1 ; then
508 (
509 cd $1 ; shift
510 if test -r "../"$1"/eedata.mth" ; then
511 # found eedata.mth in 1rst input dir and it is readable
512 if test "x$MULTI_THREAD" = "xt" ; then
513 # multi-threaded test: remove symbolic link & link eedata.mth
514 if test -h eedata ; then rm -f eedata ; fi
515 if test ! -r eedata ; then
516 ln -sf "../"$1"/eedata.mth" eedata ;
517 printf 'eedata.mth ' 1>&2
518 fi
519 else
520 # not multi-threaded test: remove eedata symbolic link
521 if test -h eedata ; then rm -f eedata ; fi
522 fi
523 fi
524 for ldir in $* ; do
525 if test -d "../"$ldir ; then
526 printf 'ldir='${ldir} 1>&2
527 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
528 for i in $files ; do
529 if test ! -d "../"$ldir/$i ; then
530 if test ! -r $i ; then
531 printf ' '$i 1>&2
532 ln -sf "../"$ldir"/"$i $i
533 fi
534 fi
535 done
536 if test -x "../"$ldir"/"prepare_run ; then
537 "../"$ldir"/"prepare_run
538 fi
539 printf ' ; ' 1>&2
540 fi
541 done
542 )
543 fi
544 }
545
546 runmodel()
547 {
548 # runmodel directory
549 #
550 # runs "$COMMAND in "directory"
551 # (where "$COMMAND" is relative to "directory")
552 (
553 cd $1
554 printf 'runmodel in %s ...' $1 1>&2
555 # make output.txt
556 echo
557 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
558 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
559 ln -sf "../"$builddir"/"$EXECUTABLE .
560 fi
561 if test ! -x $EXECUTABLE ; then
562 rm -f run.log ; touch run.log
563 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
564 echo " no executable:" $EXECUTABLE >> run.log
565 RETVAL=8
566 ENDVAL=-1
567 else
568 if test $OUTPUTFILE -ot $EXECUTABLE ; then
569 rm -f run.log ; touch run.log
570 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
571 ( eval $COMMAND ) >> run.log 2>&1
572 RETVAL=$?
573 else
574 RETVAL=0
575 if test -f run.log ; then
576 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
577 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
578 else
579 touch run.log
580 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
581 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
582 echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
583 fi
584 fi
585 ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
586 fi
587 rm -f run.log_00
588 #if test "x$RETVAL" = x0 ; then
589 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
590 tail run.log
591 echo successful 1>&2
592 # === Reduce the size of the testing emails!
593 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
594 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
595 return 0
596 else
597 tail run.log
598 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
599 cp run.log $CDIR"/run.log"
600 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
601 return 1
602 fi
603 )
604 }
605
606 createcodelet()
607 {
608 # create codelet for comparing model output
609
610 printf "creating the comparison code... "
611 cat > tr_cmpnum.c <<EOF
612 #include <stdio.h>
613 #include <math.h>
614 int main( int argc, char** argv ) {
615 int linnum,cmplin,best,lncnt;
616 double a,b,abave,relerr;
617 best = -22;
618 lncnt = 0;
619 while( 1 & (lncnt+=1) < 999 ) {
620 scanf("%d", &linnum);
621 if (linnum == -1) break;
622 scanf("%lf", &a); scanf("%lf", &b);
623 abave = 0.5*(fabs(a)+fabs(b));
624 if ( abave == abave ) {
625 if (abave > 0.0) {
626 relerr=fabs(a-b)/abave;
627 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
628 else { cmplin = -16 ; }
629 best = (best > cmplin) ? best : cmplin; }
630 else { cmplin = -22 ; }
631 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
632 }
633 else {
634 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
635 break; }
636 }
637 if (lncnt == 999) best=-29;
638 if (linnum != -1) best=-99;
639 printf("%d\n", -best);
640 return 0;
641 }
642 EOF
643 $CC -o tr_cmpnum tr_cmpnum.c -lm
644
645 if [ -x ./tr_cmpnum ]; then
646 echo "OK"
647 return 0
648 else
649 echo
650 echo "ERROR: failed to compile comparison code -- please specify"
651 echo " a C compiler using the CC environment variable."
652 exit 1
653 fi
654 }
655
656 formatresults()
657 {
658 # formatresults expt genmake depend make run results*
659
660 nm=$1
661 printf '%s %s %s %s' $2 $3 $4 $5
662 shift; shift; shift; shift; shift;
663 printf '%3s' $@
664
665 if [ $1 = '--' ]; then
666 printf ' N/O '
667 else
668 if [ $1 -ge $MATCH_CRIT ]; then
669 printf ' pass'
670 else
671 printf ' FAIL'
672 fi
673 fi
674 printf ' %s' $nm
675 printf '\n'
676
677 }
678
679 scandirs()
680 {
681 if [ $# -eq 1 ]; then
682 for arg in * ; do
683 test -d $arg/$1 && echo $arg
684 done
685 else
686 echo $*
687 fi
688 }
689
690
691 ###############################################################################
692
693
694 # Default properties
695 debug=0
696 verbose=1
697 clean=0
698 expts=''
699 # ieee=1
700
701 IEEE=true
702 if test "x$MITGCM_IEEE" != x ; then
703 IEEE=$MITGCM_IEEE
704 fi
705
706
707 CLEANUP=f
708 QUICK=f
709 NOGENMAKE=f
710 NOCLEAN=f
711 NODEPEND=f
712 POSTCLEAN=f
713
714 BASH=
715 OPTFILE=NONE
716 ADDRESSES=
717 TESTDIRS=
718 SKIPDIRS=
719 MPACKDIR="../tools/mpack-1.6"
720 HAVE_MPACK=
721 MPACK="$MPACKDIR/mpack"
722 COMMAND=
723 if test "x$MAKE" = x ; then
724 MAKE=make
725 fi
726 if test "x$CC" = x ; then
727 CC=cc
728 fi
729 JOBS=
730 MPI=f
731 MULTI_THREAD=f
732 OUTDIR=
733 DELDIR=
734
735 ADM=
736
737 # Additional monitor types
738 PTRACERS_NUM="1 2 3 4 5"
739
740 MATCH_CRIT=13
741
742 printf "parsing options... "
743
744 ac_prev=
745 for ac_option ; do
746
747 # If the previous option needs an argument, assign it.
748 if test -n "$ac_prev"; then
749 eval "$ac_prev=\$ac_option"
750 ac_prev=
751 continue
752 fi
753
754 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
755
756 case $ac_option in
757
758 -help | --help | -h | --h)
759 usage ;;
760
761 -optfile | --optfile | -of | --of)
762 ac_prev=OPTFILE ;;
763 -optfile=* | --optfile=* | -of=* | --of=*)
764 OPTFILE=$ac_optarg ;;
765
766 -addr | --addr | -a | --a)
767 ac_prev=ADDRESSES ;;
768 -addr=* | --addr=*)
769 ADDRESSES=$ac_optarg ;;
770
771 -tdir | --tdir | -t | --t)
772 ac_prev=TESTDIRS ;;
773 -tdir=* | --tdir=*)
774 TESTDIRS=$ac_optarg ;;
775
776 -skipdir | --skipdir | -skd | --skd)
777 ac_prev=SKIPDIRS ;;
778 -skipdir=* | --skipdir=*)
779 SKIPDIRS=$ac_optarg ;;
780
781 -bash | --bash | -b | --b)
782 ac_prev=BASH ;;
783 -bash=* | --bash=*)
784 BASH=$ac_optarg ;;
785
786 -command | --command | -c | --c)
787 ac_prev=COMMAND ;;
788 -command=* | --command=*)
789 COMMAND=$ac_optarg ;;
790
791 -make | --make | -m | --m)
792 ac_prev=MAKE ;;
793 -make=* | --make=*)
794 MAKE=$ac_optarg ;;
795
796 -odir | --odir)
797 ac_prev=OUTDIR ;;
798 -odir=* | --odir=*)
799 OUTDIR=$ac_optarg ;;
800
801 -ptracers | --ptracers | -ptr | --ptr)
802 ac_prev=PTRACERS_NUM ;;
803 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
804 PTRACERS_NUM=$ac_optarg ;;
805
806 -match | --match ) ac_prev=MATCH_CRIT ;;
807 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
808
809 -j) ac_prev=JOBS ;;
810 -j=*) JOBS=$ac_optarg ;;
811
812 -clean | --clean)
813 CLEANUP=t ; DELDIR=t ;;
814
815 -quick | --quick | -q | --q)
816 QUICK=t ;;
817 -nogenmake | --nogenmake | -ng | --ng)
818 NOGENMAKE=t ;;
819 -noclean | --noclean | -nc | --nc)
820 NOCLEAN=t ;;
821 -nodepend | --nodepend | -nd | --nd)
822 NODEPEND=t ;;
823
824 -postclean | --postclean | -pc | --pc)
825 POSTCLEAN=t ;;
826
827 -mpi) MPI=t ;;
828
829 -mth) MULTI_THREAD=t ;;
830
831 -adm | -ad) ADM=t ;;
832
833 -ieee) IEEE=true ;;
834 -noieee) IEEE= ;;
835
836 -verbose) verbose=2 ;;
837 -debug) debug=1 ;;
838 -quiet) verbose=0 ;;
839
840 -deldir | -dd) DELDIR=t ;;
841
842 -ts) TS=t;;
843
844 -papis) PAPIS=t;;
845
846 -pcls) PCL=t;;
847
848 -*)
849 echo "Error: unrecognized option: "$ac_option
850 usage
851 ;;
852
853 *)
854 echo "Error: unrecognized argument: "$ac_option
855 usage
856 ;;
857
858 esac
859
860 done
861
862 if test "x$QUICK" = xt ; then
863 NOGENMAKE=t
864 NOCLEAN=t
865 NODEPEND=t
866 fi
867
868 if test "x$TESTDIRS" = x ; then
869 if test "x$ADM" = xt ; then
870 LIST=`scandirs results_ad`
871 else
872 LIST=`scandirs results`
873 fi
874 else
875 #- expand group of experiments:
876 LIST=" "
877 for xx in $TESTDIRS
878 do
879 case $xx in
880 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
881 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
882 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
883 ;;
884 'tutorials')
885 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
886 *) LIST=${LIST}" "$xx ;;
887 esac
888 done
889 fi
890 #echo 'LIST='${LIST}'<'
891 #- skip dirs, remove duplicate and non-directory:
892 TESTDIRS=" "
893 count=0
894 for xx in $LIST
895 do
896 yy=`echo $SKIPDIRS | grep -c $xx`
897 if test $yy = 0 ; then
898 if test -d $xx ; then
899 yy=`echo $TESTDIRS | grep -c $xx`
900 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
901 else count=1 ;
902 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
903 fi
904 else
905 if test $count = 1 ; then echo -n ", \"$xx\""
906 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
907 fi
908 fi
909 done
910 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
911 #echo 'TESTDIRS='${TESTDIRS}'<'
912
913 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
914 OPTFILE=$MITGCM_OF
915 fi
916
917 if test "x$ADM" = xt ; then
918 EXECUTABLE="mitgcmuv_ad"
919 OUTPUTFILE="output_adm.txt"
920 else
921 EXECUTABLE="mitgcmuv"
922 OUTPUTFILE="output.txt"
923 fi
924
925 if test "x$COMMAND" = x ; then
926 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
927 fi
928 if test "x$MPI" = xt ; then
929 OUTPUTFILE="STDOUT.0000"
930 fi
931
932 #echo "OK"
933 echo "OK (COMMAND= $COMMAND )"
934
935 # create the FORTRAN comparison code
936 createcodelet
937
938 # build the mpack utility
939 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
940 echo "skipping mpack build"
941 else
942 build_mpack
943 fi
944
945 # Create a uniquely named directory to store results
946 MACH=`hostname`
947 UNAMEA=`uname -a`
948 DATE=`date +%Y%m%d`
949 BASE="tr_"$MACH"_"$DATE"_"
950 if test "x$OUTDIR" != x ; then
951 BASE="tr_"$OUTDIR"_"$DATE"_"
952 fi
953 DNUM=0
954 DRESULTS="$BASE$DNUM"
955 while test -e $DRESULTS ; do
956 DNUM=$(( $DNUM + 1 ))
957 DRESULTS="$BASE$DNUM"
958 done
959 mkdir $DRESULTS
960 RETVAL=$?
961 if test "x$RETVAL" != x0 ; then
962 echo "ERROR: Can't create results directory \"./$DRESULTS\""
963 exit 1
964 fi
965 SUMMARY="$DRESULTS/summary.txt"
966 printf "Start time: " >> $SUMMARY
967 start_date=`date`
968 echo $start_date > $SUMMARY
969
970 of_path=
971 if test "x$OPTFILE" != xNONE ; then
972 if test -r $OPTFILE ; then
973 # get the path
974 path=${OPTFILE%/*}
975 if test "x$path" = x ; then
976 of_path=`pwd`
977 else
978 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
979 fi
980 file=${OPTFILE##*/}
981 OPTFILE=$of_path/$file
982 cp $OPTFILE $DRESULTS
983 echo >> $SUMMARY
984 echo " OPTFILE=$OPTFILE" >> $SUMMARY
985 else
986 echo | tee $SUMMARY
987 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
988 exit 1
989 fi
990 else
991 echo >> $SUMMARY
992 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
993 echo " so the genmake default will be used." >> $SUMMARY
994 fi
995 echo
996 echo >> $SUMMARY
997 if test "x$ADM" = x ; then
998 if [ $MATCH_CRIT -lt 10 ] ;
999 then line_0=" "$MATCH_CRIT ;
1000 else line_0=" "$MATCH_CRIT ; fi
1001 line_0=" $line_0 ----T----- ----S----- ----U----- ----V-----"
1002 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1003 line_1="G D M c m s m s m s m s"
1004 line_2="E p a R g m m e . m m e . m m e . m m e ."
1005 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1006 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1007 for ii in $PTRACERS_NUM ; do
1008 # tst=`eval 'echo $HAVE_PTR0'$ii`
1009 # if test "x$tst" = xt ; then
1010 line_0="$line_0 --PTR 0"$ii"--"
1011 line_1="$line_1 m s"
1012 line_2="$line_2 m m e ."
1013 line_3="$line_3 i a a d"
1014 line_4="$line_4 n x n ."
1015 # fi
1016 done
1017 echo "$line_0" | tee -a $SUMMARY
1018 echo "$line_1" | tee -a $SUMMARY
1019 echo "$line_2" | tee -a $SUMMARY
1020 echo "$line_3" | tee -a $SUMMARY
1021 echo "$line_4" | tee -a $SUMMARY
1022 echo " " | tee -a $SUMMARY
1023 else
1024 echo "ADJOINT=true" >> $SUMMARY
1025 echo >> $SUMMARY
1026 cat << EOF | tee -a $SUMMARY
1027 G D M C G
1028 E p a R o r
1029 N n k u s a
1030 2 d e n t d
1031
1032 EOF
1033 fi
1034
1035 # ...and each test directory...
1036 for dir in $TESTDIRS ; do
1037
1038 # Cleanup only!
1039 if test "x$CLEANUP" = xt ; then
1040 if test -r $dir/build/Makefile ; then
1041 echo ' ------ clean dir:' $dir/build
1042 ( cd $dir/build ; make CLEAN )
1043 fi
1044 if test -d $dir/run/CVS ; then
1045 echo ' ------ clean dir:' $dir/run
1046 run_clean $dir/run
1047 fi
1048 (
1049 cd $dir
1050 rm -rf tr_run.*
1051 )
1052 continue
1053 fi
1054
1055 # Verify that the testdir exists and contains previous
1056 # results in the correct location--or skip this directory!
1057 fout=
1058 if test "x$ADM" = x ; then
1059 fout=$dir"/results/output.txt"
1060 else
1061 fout=$dir"/results_ad/output_adm.txt"
1062 fi
1063 if test ! -r $fout ; then
1064 echo "can't read \"$fout\" -- skipping $dir"
1065 continue
1066 fi
1067 if test "x$ADM" = x ; then
1068 check_for_add_mon_output $fout
1069 fi
1070
1071 # Check for additional types of monitor output
1072
1073 builddir="build"
1074 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1075 rundir="run"
1076 #rundir=$builddir
1077 if test ! -d $dir/$rundir ; then
1078 rundir=$builddir
1079 fi
1080
1081 if test "x$ADM" = x ; then
1082 code_dir=code
1083 CODE_DIR=$dir/code
1084 input_dirs='input'
1085 else
1086 code_dir=code_ad
1087 CODE_DIR=$dir/code_ad
1088 input_dirs='input_ad input'
1089 fi
1090 BUILD_DIR=$dir/$builddir
1091
1092 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1093 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1094 continue
1095 fi
1096 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1097 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1098 continue
1099 fi
1100
1101 # Check whether there are "extra runs" for this testdir
1102 extra_runs=
1103 if test "x$ADM" = x ; then
1104 ex_run_dirs=`( cd $dir ; echo input.* )`
1105 #echo "ex_run_dirs='$ex_run_dirs'"
1106 for exd in $ex_run_dirs ; do
1107 name=`echo $exd | sed -e 's/input.//g'`
1108 outf="$dir/results/output.$name.txt"
1109 if test -f $outf -a -r $outf ; then
1110 if test "x$MULTI_THREAD" = "xt" ; then
1111 if test -r $dir"/"$exd"/eedata.mth" ; then
1112 extra_runs="$extra_runs $name"
1113 #else echo $dir"/"$exd"/eedata.mth: not found"
1114 fi
1115 else
1116 extra_runs="$extra_runs $name"
1117 fi
1118 fi
1119 done
1120 fi
1121
1122 echo "-------------------------------------------------------------------------------"
1123 echo
1124 if test "x$extra_runs" = "x" ; then
1125 echo "Experiment: $dir"
1126 else
1127 echo "Experiment: $dir ; extra_runs=$extra_runs"
1128 fi
1129 echo
1130 unset genmake makedepend make run
1131 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1132
1133 # Create an output dir for each OPTFILE/tdir combination
1134 rel_CDIR=$DRESULTS"/"$dir
1135 mkdir $rel_CDIR
1136 CDIR=`pwd`"/$rel_CDIR"
1137
1138 if test "x$CLEANUP" = xt ; then
1139 echo '====>>> this is to check that we never go through this part <<< ==='
1140 makeclean $dir/$builddir \
1141 && run_clean $dir/$rundir
1142 else
1143 genmakemodel $dir/$builddir && genmake=Y \
1144 && makeclean $dir/$builddir \
1145 && run_clean $dir/$rundir \
1146 && symlink_mpifiles $dir $code_dir $builddir \
1147 && makedependmodel $dir/$builddir && makedepend=Y \
1148 && makemodel $dir/$builddir && make=Y \
1149 && linkdata $dir/$rundir $input_dirs \
1150 && runmodel $dir/$rundir && run=Y \
1151 && results=`testoutput_run $dir $rundir "txt"`
1152 fi
1153
1154 echo
1155 if test "x$ADM" = x ; then
1156 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1157 echo
1158 echo "$fres" >> $SUMMARY
1159 echo "fresults='$fres'" > $CDIR"/summary.txt"
1160 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1161 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1162 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1163 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1164
1165 for ex in $extra_runs ; do
1166 unset run
1167 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1168 # Create an output dir for each OPTFILE/tdir.ex combination
1169 rel_CDIR=$DRESULTS"/"$dir"."$ex
1170 mkdir $rel_CDIR
1171 CDIR=`pwd`"/$rel_CDIR"
1172 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1173 run_clean $dir/tr_run.$ex
1174 linkdata $dir/tr_run.$ex input.$ex input
1175 runmodel $dir/tr_run.$ex && run=Y \
1176 && results=`testoutput_run $dir tr_run.$ex ${ex}".txt"`
1177 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1178 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1179 fres="$fres.$ex"
1180 echo
1181 echo "$fres" >> $SUMMARY
1182 echo "fresults='$fres'" > $CDIR"/summary.txt"
1183 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1184 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1185 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1186 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1187 if test "x$POSTCLEAN" = xt ; then
1188 run_clean $dir/tr_run.$ex
1189 fi
1190 done
1191 else
1192 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1193 fres=$fres"$results $dir"
1194 echo
1195 echo "$fres" >> $SUMMARY
1196 echo "fresults='$fres'" > $CDIR"/summary.txt"
1197 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1198 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1199 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1200 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1201 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1202 >> $CDIR"/summary.txt"
1203 fi
1204
1205 #postclean $dir/$builddir
1206 if test "x$POSTCLEAN" = xt ; then
1207 makeclean $dir/$builddir \
1208 && run_clean $dir/$rundir
1209 fi
1210
1211 echo "-------------------------------------------------------------------------------"
1212
1213 done
1214
1215 printf "Start time: " >> $SUMMARY
1216 echo $start_date >> $SUMMARY
1217 printf "End time: " >> $SUMMARY
1218 date >> $SUMMARY
1219
1220 # If addresses were supplied and mpack built successfully, then try
1221 # to send email using mpack.
1222 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1223 echo "No results email was sent."
1224 else
1225 if test "x$HAVE_MPACK" = xt ; then
1226 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1227 && gzip $DRESULTS".tar" \
1228 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1229 RETVAL=$?
1230 if test "x$RETVAL" != x0 ; then
1231 echo
1232 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1233 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1234 echo " summary of results from the directory \"$DRESULTS\"."
1235 echo
1236 else
1237 echo
1238 echo "An email containing results was sent to the following addresses:"
1239 echo " \"$ADDRESSES\""
1240 echo
1241 fi
1242 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1243 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1244 fi
1245 fi
1246
1247 rm -f tr_cmpnum.c tr_cmpnum
1248
1249 if test "x$CLEANUP" != xt ; then
1250 cat $SUMMARY | sed 's/ -- -- -- --//g'
1251 if test -e tr_out.txt ; then
1252 mv tr_out.txt tr_out.txt.old
1253 fi
1254 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1255 fi
1256
1257 if test "x$DELDIR" = xt ; then
1258 rm -rf $DRESULTS
1259 fi

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