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Revision 1.92 - (show annotations) (download)
Wed Sep 5 01:46:37 2007 UTC (16 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.91: +14 -3 lines
add argument "MATCH_CRIT" (option: -match $Number) = number of matching
 digits to get a "pass"

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.91 2007/09/05 00:07:25 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-of=|-optfile=)STRING list of optfiles to use"
19 echo " (-a|-addr) STRING list of email recipients"
20 echo " (DEF=\"edhill@mitgcm.org\")"
21 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
22 echo " (recognized groups: basic, tutorials)"
23 echo " (DEF=\"\" which test all)"
24 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
25 echo " (DEF=\"\" which test all)"
26 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
27 echo " Bourne-compatible \"sh\" shell"
28 echo " (DEF=\"\" for \"bash\")"
29 echo " (-adm|-ad) perform an adjoint run"
30 echo " (-command) STRING command to run"
31 echo " (DEF=\"make output.txt\")"
32 echo " (-m|-make) STRING command to use for \"make\""
33 echo " (DEF=\"make\")"
34 echo " (-odir) STRING used to build output directory name"
35 echo " (DEF=\"hostname\")"
36 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
37 echo " (DEF=\"1 2 3 4 5\")"
38 echo " (-match) NUMBER Matching Criteria (number of digits)"
39 echo " (DEF=\"12\")"
40 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
41 echo " (-clean) *ONLY* run \"make CLEAN\""
42 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
43 echo " (-nogenmake|-ng) skip the genmake stage"
44 echo " (-noclean|-nc) skip the \"make clean\" stage"
45 echo " (-nodepend|-nd) skip the \"make depend\" stage"
46 echo " (-deldir|-dd) on success, delete the output directory"
47 echo " (-ts) provide timing information per timestep"
48 echo " (-papis) provide MFlop/s per timestep using PAPI"
49 echo " (-pcls) provide MFlop/s per timestep using PCL"
50 echo
51 echo "and where STRING can be a whitespace-delimited list"
52 echo "such as:"
53 echo
54 echo " -t 'exp0 exp2 exp3' "
55 echo " -addr='abc@123.com testing@home.org'"
56 echo
57 echo "provided that the expression is properly quoted within the current"
58 echo "shell (note the use of single quotes to protect white space)."
59 echo
60 exit 1
61 }
62
63 # build the mpack utility
64 build_mpack()
65 {
66 printf "building the mpack utility... "
67 if test ! -x "$MPACKDIR/mpack" ; then
68 if test ! -d $MPACKDIR ; then
69 echo
70 echo "Error: can't find \"$MPACKDIR\""
71 echo " are you sure this program is being run in the correct "
72 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
73 echo
74 HAVE_MPACK=f
75 fi
76 printf "building mpack... "
77 if test "x$CC" = x ; then
78 export CC=cc
79 fi
80 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
81 RETVAL=$?
82 if test "x$RETVAL" != x0 ; then
83 echo
84 echo "Error building the mpack tools at: $MPACK_DIR"
85 echo
86 HAVE_MPACK=f
87 else
88 rm -f tr_build_mpack.out
89 HAVE_MPACK=t
90 fi
91 else
92 HAVE_MPACK=t
93 fi
94 echo "OK"
95 }
96
97 testoutput_for_prop()
98 {
99 # testoutput_for_prop dir s1 label subdir extension
100 #
101 # compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt
102 # using search strings s1 and text label
103
104 if [ $debug -gt 0 ]; then
105 echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2
106 fi
107 if [ -r $1/$4/$OUTPUTFILE ]; then
108 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
109 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
110 if [ $lncntA -lt 3 ]; then
111 if [ $verbose -gt 0 ]; then
112 echo Not enough lines of output when searching for "$2" 1>&2
113 fi
114 return 99
115 fi
116 else
117 echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2
118 return 99
119 fi
120 if [ $debug -gt 0 ]; then
121 echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2
122 fi
123 grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt
124 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
125 if [ $lncntB -lt 3 ]; then
126 if [ $verbose -gt 0 ]; then
127 echo Not enough lines of output when searching for "$2" 1>&2
128 fi
129 return 99
130 fi
131 if [ $lncntA -ne $lncntB ]; then
132 if [ $verbose -gt 0 ]; then
133 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
134 fi
135 return 99
136 fi
137 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
138 if [ $has_nan -gt 0 ] ; then
139 echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2
140 return 99
141 fi
142 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
143 if [ $has_inf -gt 0 ] ; then
144 echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2
145 return 99
146 fi
147 if [ $debug -gt 0 ]; then
148 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
149 fi
150 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
151 if [ $debug -gt 0 ]; then
152 echo testoutput_for_prop: compare_lines 1>&2
153 fi
154 if [ $verbose -gt 1 ]; then
155 cat tmp3.txt 1>&2
156 fi
157 echo "-1" >> tmp3.txt
158 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
159 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
160 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
161 if [ $digits_of_similarity -eq 99 ]; then
162 if [ $verbose -gt 0 ]; then
163 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
164 fi
165 digits_of_similarity=99
166 else
167 if [ $verbose -gt 0 ]; then
168 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
169 fi
170 fi
171 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
172
173 return $digits_of_similarity
174 }
175
176 dashnum()
177 {
178 # dashnum n1 n2 n3 ...
179 #
180 # print numbers using %3i format or "--" if number = 99
181
182 for num in $@ ; do
183 if [ $num = 99 ]; then
184 printf ' --'
185 else
186 printf '%3i' $num
187 fi
188 done
189 }
190
191 testoutput_ad()
192 {
193 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
194 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt
195 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
196 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt
197 join t05.txt t15.txt > t5.txt
198 join t06.txt t16.txt > t6.txt
199 echo "-1" >> t5.txt
200 echo "-1" >> t6.txt
201 digits_5=`./tr_cmpnum < t5.txt`
202 digits_6=`./tr_cmpnum < t6.txt`
203 dashnum $digits_5 $digits_6
204 rm -f t[01][56].txt t[56].txt
205 }
206
207 check_for_add_mon_output()
208 {
209 # Check for additional types of monitor output
210 if test "x$1" = x ; then
211 return
212 fi
213
214 for ii in $PTRACERS_NUM ; do
215 eval "HAVE_PTR0"$ii"=f"
216 done
217
218 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
219 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
220 for ii in $PTRACERS_NUM ; do
221 for jj in $ptr_add ; do
222 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
223 tst=`grep $name $1 | wc -l | awk '{print $1}'`
224 if test ! "x$tst" = x0 ; then
225 eval "HAVE_PTR0"$ii"=t"
226 fi
227 done
228 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
229 done
230 }
231
232 testoutput()
233 {
234 # testoutput directory subdir extension
235 #
236 # test output in "directory"
237 if test "x$ADM" = x ; then
238 if [ $debug -gt 0 ]; then
239 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
240 fi
241 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
242 if [ $debug -gt 0 ]; then
243 echo testoutput: cg2dres=$cg2dres 1>&2
244 fi
245 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
246 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
247 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
248 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
249 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
250 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
251 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
252 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
253 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
254 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
255 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
256 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
257 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
258 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
259 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
260 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
261
262 # This is for PTRACERS
263 for ii in $PTRACERS_NUM ; do
264 eval `echo "p0"$ii"_min=99"`
265 eval `echo "p0"$ii"_max=99"`
266 eval `echo "p0"$ii"_mean=99"`
267 eval `echo "p0"$ii"_sd=99"`
268 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
269 #echo 'tst = '$tst
270 if test "x$tst" = xt ; then
271 a="trcstat_ptracer0"
272 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
273 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
274 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
275 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
276 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
277 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
278 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
279 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
280 fi
281 done
282
283 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
284 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
285 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
286 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
287 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
288 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
289 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
290
291 eval "dashnum $allargs"
292
293 else
294 testoutput_ad $1 $2 "precision_grdchk_result"
295 fi
296 }
297
298 genmakemodel()
299 {
300 # genmakemodel directory
301 if test "x$NOGENMAKE" = xt ; then
302 echo "genmake skipped!"
303 else
304 if test "x$BASH" = x ; then
305 GENMAKE2="../../../tools/genmake2"
306 else
307 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
308 fi
309 (
310 cd $1;
311 command="$GENMAKE2 -ds -m $MAKE"
312 if test "x$ADM" = x ; then
313 command="$command --mods=../code"
314 else
315 command="$command --mods=../code_ad"
316 fi
317 if test "x$OPTFILE" != xNONE ; then
318 command="$command --optfile=$OPTFILE"
319 fi
320 if test "x$IEEE" != x ; then
321 command="$command -ieee"
322 fi
323 if test "x$MPI" = xt ; then
324 command="$command -mpi"
325 fi
326 if test "x$TS" = xt ; then
327 command="$command -ts"
328 fi
329 if test "x$PAPIS" = xt ; then
330 command="$command -papis"
331 else
332 if test "x$PCLS" = xt ; then
333 command="$command -pcls"
334 fi
335 fi
336 printf 'genmake ... ' 1>&2
337 $command > make.log 2>&1
338 RETVAL=$?
339 # Reduce the size of the testing emails!
340 head -100 Makefile > $CDIR/Makefile_head
341 if test "x$RETVAL" != x0 ; then
342 tail make.log
343 echo "genmakemodel: genmake failed" 1>&2
344 cp genmake_* make.log $CDIR
345 return 1
346 else
347 echo "successful" 1>&2
348 fi
349 )
350 fi
351 }
352
353 makeclean()
354 {
355 # makeclean directory
356 if test "x$NOCLEAN" = xt ; then
357 echo "make Clean skipped!"
358 else
359 (
360 cd $1;
361 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
362 if test -r Makefile ; then
363 printf 'clean build-dir: make Clean ... ' 2>&1
364 $MAKE Clean >> make.log 2>&1
365 RETVAL=$?
366 if test "x$RETVAL" != x0 ; then
367 tail make.log
368 echo "makeclean: \"make Clean\" failed" 1>&2
369 cp make.log $CDIR"/make.log"
370 return 1
371 fi
372 fi
373 echo successful 1>&2
374 exit 0
375 )
376 fi
377 }
378
379 run_clean()
380 {
381 # run_clean directory
382 if test "x$NOCLEAN" = xt ; then
383 echo "run_clean skipped!"
384 else
385 (
386 cd $1;
387 printf 'clean run-dir ... ' 2>&1
388 # part of what is done after "make clean" when doing "make CLEAN"
389 find . -name "*.meta" -exec rm {} \;
390 find . -name "*.data" -exec rm {} \;
391 find . -name "fort.*" -exec rm {} \;
392 find . -type l -exec rm {} \;
393 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
394 rm -rf mnc_test_*
395 echo successful 1>&2
396 exit 0
397 )
398 fi
399 }
400
401 makedependmodel()
402 {
403 # makedependmodel directory
404 if test "x$NODEPEND" = xt ; then
405 echo "make depend skipped!"
406 else
407 (
408 cd $1;
409 printf 'make depend ... ' 1>&2
410 $MAKE depend >> make.log 2>&1
411 RETVAL=$?
412 if test "x$RETVAL" != x0 ; then
413 tail make.log
414 echo "makedependmodel: make depend failed" 1>&2
415 cp make.log $CDIR"/make.log"
416 return 1
417 else
418 echo successful 1>&2
419 fi
420 )
421 fi
422 }
423
424 makemodel()
425 {
426 # makemodel directory
427 (
428 cd $1;
429 if test -r Makefile ; then
430 printf 'make ... ' 1>&2
431 if test "x$ADM" = x ; then
432 if test "x$JOBS" = x ; then
433 $MAKE >> make.log 2>&1
434 else
435 $MAKE -j $JOBS >> make.log 2>&1
436 fi
437 else
438 $MAKE adall >> make.log 2>&1
439 fi
440 RETVAL=$?
441 if test "x$RETVAL" != x0 ; then
442 tail make.log
443 echo failed 1>&2
444 cp make.log $CDIR"/make.log"
445 return 1
446 else
447 echo successful 1>&2
448 fi
449 fi
450 )
451 }
452
453 symlink_mpifiles()
454 {
455 # Put special links so that MPI specific files are used
456 # This MUST be invoked between makeclean and makelinks because
457 # the Makefile will link to non-mpi files by default
458
459 dir=$1
460 code_dir=$2
461 BUILD_DIR=$dir/$3
462 CODE_DIR=$dir/$code_dir
463
464 # These are files that should replace their counter-part when using -mpi
465 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
466
467 # Is this an MPI run?
468 if test "x$MPI" = xt ; then
469 # YES: We symbolically link these files to the build
470 # dir so long as there is no real file in place
471 for ii in $MPI_FILES ; do
472 i=`echo $ii | sed 's:^\./::'`
473 name=`echo $i | sed 's:_mpi::' `
474 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
475 RETVAL=$?
476 if test "x$RETVAL" != x0 ; then
477 if ! test -f $BUILD_DIR/$i ; then
478 #echo Linking $name to $i
479 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
480 fi
481 fi
482 done
483 else
484 # NO: We undo any _mpi symbolically linked files
485 for ii in $MPI_FILES ; do
486 i=`echo $ii | sed 's:^\./::'`
487 name=`echo $i | sed 's:_mpi::' `
488 if test -L $BUILD_DIR/$name ; then
489 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
490 RETVAL=$?
491 if test "x$RETVAL" = x0 ; then
492 #echo Un-linking $name from $linktarg
493 rm -f $BUILD_DIR/$name
494 fi
495 fi
496 done
497 fi
498
499 }
500
501 linkdata()
502 {
503 # linkdata run_dir input_dir_1 input_dir_2 ...
504 #
505 # symbolically link data files to run directory
506 if test -d $1 ; then
507 (
508 cd $1 ; shift
509 if test -r "../"$1"/eedata.mth" ; then
510 # found eedata.mth in 1rst input dir and it is readable
511 if test "x$MULTI_THREAD" = "xt" ; then
512 # multi-threaded test: remove symbolic link & link eedata.mth
513 if test -h eedata ; then rm -f eedata ; fi
514 if test ! -r eedata ; then
515 ln -sf "../"$1"/eedata.mth" eedata ;
516 printf 'eedata.mth ' 1>&2
517 fi
518 else
519 # not multi-threaded test: remove eedata symbolic link
520 if test -h eedata ; then rm -f eedata ; fi
521 fi
522 fi
523 for ldir in $* ; do
524 if test -d "../"$ldir ; then
525 printf 'ldir='${ldir} 1>&2
526 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
527 for i in $files ; do
528 if test ! -d "../"$ldir/$i ; then
529 if test ! -r $i ; then
530 printf ' '$i 1>&2
531 ln -sf "../"$ldir"/"$i $i
532 fi
533 fi
534 done
535 if test -x "../"$ldir"/"prepare_run ; then
536 "../"$ldir"/"prepare_run
537 fi
538 printf ' ; ' 1>&2
539 fi
540 done
541 )
542 fi
543 }
544
545 runmodel()
546 {
547 # runmodel directory
548 #
549 # runs "$COMMAND in "directory"
550 # (where "$COMMAND" is relative to "directory")
551 (
552 cd $1
553 printf 'runmodel in %s ...' $1 1>&2
554 # make output.txt
555 echo
556 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
557 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
558 ln -sf "../"$builddir"/"$EXECUTABLE .
559 fi
560 if test ! -x $EXECUTABLE ; then
561 rm -f run.log ; touch run.log
562 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
563 echo " no executable:" $EXECUTABLE >> run.log
564 RETVAL=8
565 ENDVAL=-1
566 else
567 if test $OUTPUTFILE -ot $EXECUTABLE ; then
568 rm -f run.log ; touch run.log
569 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
570 ( eval $COMMAND ) >> run.log 2>&1
571 RETVAL=$?
572 else
573 RETVAL=0
574 if test -f run.log ; then
575 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
576 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
577 else
578 touch run.log
579 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
580 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
581 echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
582 fi
583 fi
584 ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
585 fi
586 rm -f run.log_00
587 #if test "x$RETVAL" = x0 ; then
588 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
589 tail run.log
590 echo successful 1>&2
591 # === Reduce the size of the testing emails!
592 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
593 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
594 return 0
595 else
596 tail run.log
597 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
598 cp run.log $CDIR"/run.log"
599 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
600 return 1
601 fi
602 )
603 }
604
605 createcodelet()
606 {
607 # create codelet for comparing model output
608
609 printf "creating the comparison code... "
610 cat > tr_cmpnum.c <<EOF
611 #include <stdio.h>
612 #include <math.h>
613 int main( int argc, char** argv ) {
614 int linnum,cmplin,best,lncnt;
615 double a,b,abave,relerr;
616 best = -22;
617 lncnt = 0;
618 while( 1 & (lncnt+=1) < 999 ) {
619 scanf("%d", &linnum);
620 if (linnum == -1) break;
621 scanf("%lf", &a); scanf("%lf", &b);
622 abave = 0.5*(fabs(a)+fabs(b));
623 if ( abave == abave ) {
624 if (abave > 0.0) {
625 relerr=fabs(a-b)/abave;
626 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
627 else { cmplin = -16 ; }
628 best = (best > cmplin) ? best : cmplin; }
629 else { cmplin = -22 ; }
630 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
631 }
632 else {
633 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
634 break; }
635 }
636 if (lncnt == 999) best=-29;
637 if (linnum != -1) best=-99;
638 printf("%d\n", -best);
639 return 0;
640 }
641 EOF
642 $CC -o tr_cmpnum tr_cmpnum.c -lm
643
644 if [ -x ./tr_cmpnum ]; then
645 echo "OK"
646 return 0
647 else
648 echo
649 echo "ERROR: failed to compile comparison code -- please specify"
650 echo " a C compiler using the CC environment variable."
651 exit 1
652 fi
653 }
654
655 formatresults()
656 {
657 # formatresults expt genmake depend make run results*
658
659 nm=$1
660 printf '%s %s %s %s' $2 $3 $4 $5
661 shift; shift; shift; shift; shift;
662 printf '%3s' $@
663
664 if [ $1 = '--' ]; then
665 printf ' N/O '
666 else
667 if [ $1 -ge $MATCH_CRIT ]; then
668 printf ' pass'
669 else
670 printf ' FAIL'
671 fi
672 fi
673 printf ' %s' $nm
674 printf '\n'
675
676 }
677
678 scandirs()
679 {
680 if [ $# -eq 1 ]; then
681 for arg in * ; do
682 test -d $arg/$1 && echo $arg
683 done
684 else
685 echo $*
686 fi
687 }
688
689
690 ###############################################################################
691
692
693 # Default properties
694 debug=0
695 verbose=1
696 clean=0
697 expts=''
698 # ieee=1
699
700 IEEE=true
701 if test "x$MITGCM_IEEE" != x ; then
702 IEEE=$MITGCM_IEEE
703 fi
704
705
706 CLEANUP=f
707 QUICK=f
708 NOGENMAKE=f
709 NOCLEAN=f
710 NODEPEND=f
711 POSTCLEAN=f
712
713 BASH=
714 OPTFILE=NONE
715 ADDRESSES=
716 TESTDIRS=
717 SKIPDIRS=
718 MPACKDIR="../tools/mpack-1.6"
719 HAVE_MPACK=
720 MPACK="$MPACKDIR/mpack"
721 COMMAND=
722 if test "x$MAKE" = x ; then
723 MAKE=make
724 fi
725 if test "x$CC" = x ; then
726 CC=cc
727 fi
728 JOBS=
729 MPI=f
730 MULTI_THREAD=f
731 OUTDIR=
732 DELDIR=
733
734 ADM=
735
736 # Additional monitor types
737 PTRACERS_NUM="1 2 3 4 5"
738
739 MATCH_CRIT=13
740
741 printf "parsing options... "
742
743 ac_prev=
744 for ac_option ; do
745
746 # If the previous option needs an argument, assign it.
747 if test -n "$ac_prev"; then
748 eval "$ac_prev=\$ac_option"
749 ac_prev=
750 continue
751 fi
752
753 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
754
755 case $ac_option in
756
757 -help | --help | -h | --h)
758 usage ;;
759
760 -optfile | --optfile | -of | --of)
761 ac_prev=OPTFILE ;;
762 -optfile=* | --optfile=* | -of=* | --of=*)
763 OPTFILE=$ac_optarg ;;
764
765 -addr | --addr | -a | --a)
766 ac_prev=ADDRESSES ;;
767 -addr=* | --addr=*)
768 ADDRESSES=$ac_optarg ;;
769
770 -tdir | --tdir | -t | --t)
771 ac_prev=TESTDIRS ;;
772 -tdir=* | --tdir=*)
773 TESTDIRS=$ac_optarg ;;
774
775 -skipdir | --skipdir | -skd | --skd)
776 ac_prev=SKIPDIRS ;;
777 -skipdir=* | --skipdir=*)
778 SKIPDIRS=$ac_optarg ;;
779
780 -bash | --bash | -b | --b)
781 ac_prev=BASH ;;
782 -bash=* | --bash=*)
783 BASH=$ac_optarg ;;
784
785 -command | --command | -c | --c)
786 ac_prev=COMMAND ;;
787 -command=* | --command=*)
788 COMMAND=$ac_optarg ;;
789
790 -make | --make | -m | --m)
791 ac_prev=MAKE ;;
792 -make=* | --make=*)
793 MAKE=$ac_optarg ;;
794
795 -odir | --odir)
796 ac_prev=OUTDIR ;;
797 -odir=* | --odir=*)
798 OUTDIR=$ac_optarg ;;
799
800 -ptracers | --ptracers | -ptr | --ptr)
801 ac_prev=PTRACERS_NUM ;;
802 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
803 PTRACERS_NUM=$ac_optarg ;;
804
805 -match | --match ) ac_prev=MATCH_CRIT ;;
806 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
807
808 -j) ac_prev=JOBS ;;
809 -j=*) JOBS=$ac_optarg ;;
810
811 -clean | --clean)
812 CLEANUP=t ; DELDIR=t ;;
813
814 -quick | --quick | -q | --q)
815 QUICK=t ;;
816 -nogenmake | --nogenmake | -ng | --ng)
817 NOGENMAKE=t ;;
818 -noclean | --noclean | -nc | --nc)
819 NOCLEAN=t ;;
820 -nodepend | --nodepend | -nd | --nd)
821 NODEPEND=t ;;
822
823 -postclean | --postclean | -pc | --pc)
824 POSTCLEAN=t ;;
825
826 -mpi) MPI=t ;;
827
828 -mth) MULTI_THREAD=t ;;
829
830 -adm | -ad) ADM=t ;;
831
832 -ieee) IEEE=true ;;
833 -noieee) IEEE= ;;
834
835 -verbose) verbose=2 ;;
836 -debug) debug=1 ;;
837 -quiet) verbose=0 ;;
838
839 -deldir | -dd) DELDIR=t ;;
840
841 -ts) TS=t;;
842
843 -papis) PAPIS=t;;
844
845 -pcls) PCL=t;;
846
847 -*)
848 echo "Error: unrecognized option: "$ac_option
849 usage
850 ;;
851
852 *)
853 echo "Error: unrecognized argument: "$ac_option
854 usage
855 ;;
856
857 esac
858
859 done
860
861 if test "x$QUICK" = xt ; then
862 NOGENMAKE=t
863 NOCLEAN=t
864 NODEPEND=t
865 fi
866
867 if test "x$TESTDIRS" = x ; then
868 if test "x$ADM" = xt ; then
869 LIST=`scandirs results_ad`
870 else
871 LIST=`scandirs results`
872 fi
873 else
874 #- expand group of experiments:
875 LIST=" "
876 for xx in $TESTDIRS
877 do
878 case $xx in
879 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
880 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
881 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
882 ;;
883 'tutorials')
884 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
885 *) LIST=${LIST}" "$xx ;;
886 esac
887 done
888 fi
889 #echo 'LIST='${LIST}'<'
890 #- skip dirs, remove duplicate and non-directory:
891 TESTDIRS=" "
892 count=0
893 for xx in $LIST
894 do
895 yy=`echo $SKIPDIRS | grep -c $xx`
896 if test $yy = 0 ; then
897 if test -d $xx ; then
898 yy=`echo $TESTDIRS | grep -c $xx`
899 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
900 else count=1 ;
901 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
902 fi
903 else
904 if test $count = 1 ; then echo -n ", \"$xx\""
905 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
906 fi
907 fi
908 done
909 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
910 #echo 'TESTDIRS='${TESTDIRS}'<'
911
912 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
913 OPTFILE=$MITGCM_OF
914 fi
915
916 if test "x$ADM" = xt ; then
917 EXECUTABLE="mitgcmuv_ad"
918 OUTPUTFILE="output_adm.txt"
919 else
920 EXECUTABLE="mitgcmuv"
921 OUTPUTFILE="output.txt"
922 fi
923
924 if test "x$COMMAND" = x ; then
925 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
926 fi
927 if test "x$MPI" = xt ; then
928 OUTPUTFILE="STDOUT.0000"
929 fi
930
931 #echo "OK"
932 echo "OK (COMMAND= $COMMAND )"
933
934 # create the FORTRAN comparison code
935 createcodelet
936
937 # build the mpack utility
938 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
939 echo "skipping mpack build"
940 else
941 build_mpack
942 fi
943
944 # Create a uniquely named directory to store results
945 MACH=`hostname`
946 UNAMEA=`uname -a`
947 DATE=`date +%Y%m%d`
948 BASE="tr_"$MACH"_"$DATE"_"
949 if test "x$OUTDIR" != x ; then
950 BASE="tr_"$OUTDIR"_"$DATE"_"
951 fi
952 DNUM=0
953 DRESULTS="$BASE$DNUM"
954 while test -e $DRESULTS ; do
955 DNUM=$(( $DNUM + 1 ))
956 DRESULTS="$BASE$DNUM"
957 done
958 mkdir $DRESULTS
959 RETVAL=$?
960 if test "x$RETVAL" != x0 ; then
961 echo "ERROR: Can't create results directory \"./$DRESULTS\""
962 exit 1
963 fi
964 SUMMARY="$DRESULTS/summary.txt"
965 printf "Start time: " >> $SUMMARY
966 start_date=`date`
967 echo $start_date > $SUMMARY
968
969 of_path=
970 if test "x$OPTFILE" != xNONE ; then
971 if test -r $OPTFILE ; then
972 # get the path
973 path=${OPTFILE%/*}
974 if test "x$path" = x ; then
975 of_path=`pwd`
976 else
977 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
978 fi
979 file=${OPTFILE##*/}
980 OPTFILE=$of_path/$file
981 cp $OPTFILE $DRESULTS
982 echo >> $SUMMARY
983 echo " OPTFILE=$OPTFILE" >> $SUMMARY
984 else
985 echo | tee $SUMMARY
986 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
987 exit 1
988 fi
989 else
990 echo >> $SUMMARY
991 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
992 echo " so the genmake default will be used." >> $SUMMARY
993 fi
994 echo
995 echo >> $SUMMARY
996 if test "x$ADM" = x ; then
997 if [ $MATCH_CRIT -lt 10 ] ;
998 then line_0=" "$MATCH_CRIT ;
999 else line_0=" "$MATCH_CRIT ; fi
1000 line_0=" $line_0 ----T----- ----S----- ----U----- ----V-----"
1001 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1002 line_1="G D M c m s m s m s m s"
1003 line_2="E p a R g m m e . m m e . m m e . m m e ."
1004 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1005 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1006 for ii in $PTRACERS_NUM ; do
1007 # tst=`eval 'echo $HAVE_PTR0'$ii`
1008 # if test "x$tst" = xt ; then
1009 line_0="$line_0 --PTR 0"$ii"--"
1010 line_1="$line_1 m s"
1011 line_2="$line_2 m m e ."
1012 line_3="$line_3 i a a d"
1013 line_4="$line_4 n x n ."
1014 # fi
1015 done
1016 echo "$line_0" | tee -a $SUMMARY
1017 echo "$line_1" | tee -a $SUMMARY
1018 echo "$line_2" | tee -a $SUMMARY
1019 echo "$line_3" | tee -a $SUMMARY
1020 echo "$line_4" | tee -a $SUMMARY
1021 echo " " | tee -a $SUMMARY
1022 else
1023 echo "ADJOINT=true" >> $SUMMARY
1024 echo >> $SUMMARY
1025 cat << EOF | tee -a $SUMMARY
1026 G D M C G
1027 E p a R o r
1028 N n k u s a
1029 2 d e n t d
1030
1031 EOF
1032 fi
1033
1034 # ...and each test directory...
1035 for dir in $TESTDIRS ; do
1036
1037 # Cleanup only!
1038 if test "x$CLEANUP" = xt ; then
1039 if test -r $dir/build/Makefile ; then
1040 echo ' ------ clean dir:' $dir/build
1041 ( cd $dir/build ; make CLEAN )
1042 fi
1043 if test -d $dir/run/CVS ; then
1044 echo ' ------ clean dir:' $dir/run
1045 run_clean $dir/run
1046 fi
1047 (
1048 cd $dir
1049 rm -rf tr_run.*
1050 )
1051 continue
1052 fi
1053
1054 # Verify that the testdir exists and contains previous
1055 # results in the correct location--or skip this directory!
1056 fout=
1057 if test "x$ADM" = x ; then
1058 fout=$dir"/results/output.txt"
1059 else
1060 fout=$dir"/results_ad/output_adm.txt"
1061 fi
1062 if test ! -r $fout ; then
1063 echo "can't read \"$fout\" -- skipping $dir"
1064 continue
1065 fi
1066 if test "x$ADM" = x ; then
1067 check_for_add_mon_output $fout
1068 fi
1069
1070 # Check for additional types of monitor output
1071
1072 builddir="build"
1073 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1074 rundir="run"
1075 #rundir=$builddir
1076 if test ! -d $dir/$rundir ; then
1077 rundir=$builddir
1078 fi
1079
1080 if test "x$ADM" = x ; then
1081 code_dir=code
1082 CODE_DIR=$dir/code
1083 input_dirs='input'
1084 else
1085 code_dir=code_ad
1086 CODE_DIR=$dir/code_ad
1087 input_dirs='input_ad input'
1088 fi
1089 BUILD_DIR=$dir/$builddir
1090
1091 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1092 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1093 continue
1094 fi
1095 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1096 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1097 continue
1098 fi
1099
1100 # Check whether there are "extra runs" for this testdir
1101 extra_runs=
1102 if test "x$ADM" = x ; then
1103 ex_run_dirs=`( cd $dir ; echo input.* )`
1104 #echo "ex_run_dirs='$ex_run_dirs'"
1105 for exd in $ex_run_dirs ; do
1106 name=`echo $exd | sed -e 's/input.//g'`
1107 outf="$dir/results/output.$name.txt"
1108 if test -f $outf -a -r $outf ; then
1109 if test "x$MULTI_THREAD" = "xt" ; then
1110 if test -r $dir"/"$exd"/eedata.mth" ; then
1111 extra_runs="$extra_runs $name"
1112 #else echo $dir"/"$exd"/eedata.mth: not found"
1113 fi
1114 else
1115 extra_runs="$extra_runs $name"
1116 fi
1117 fi
1118 done
1119 fi
1120
1121 echo "-------------------------------------------------------------------------------"
1122 echo
1123 if test "x$extra_runs" = "x" ; then
1124 echo "Experiment: $dir"
1125 else
1126 echo "Experiment: $dir ; extra_runs=$extra_runs"
1127 fi
1128 echo
1129 unset genmake makedepend make run
1130 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1131
1132 # Create an output dir for each OPTFILE/tdir combination
1133 rel_CDIR=$DRESULTS"/"$dir
1134 mkdir $rel_CDIR
1135 CDIR=`pwd`"/$rel_CDIR"
1136
1137 if test "x$CLEANUP" = xt ; then
1138 echo '====>>> this is to check that we never go through this part <<< ==='
1139 makeclean $dir/$builddir \
1140 && run_clean $dir/$rundir
1141 else
1142 genmakemodel $dir/$builddir && genmake=Y \
1143 && makeclean $dir/$builddir \
1144 && run_clean $dir/$rundir \
1145 && symlink_mpifiles $dir $code_dir $builddir \
1146 && makedependmodel $dir/$builddir && makedepend=Y \
1147 && makemodel $dir/$builddir && make=Y \
1148 && linkdata $dir/$rundir $input_dirs \
1149 && runmodel $dir/$rundir && run=Y \
1150 && results=`testoutput $dir $rundir "txt"`
1151 fi
1152
1153 echo
1154 if test "x$ADM" = x ; then
1155 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1156 echo
1157 echo "$fres" >> $SUMMARY
1158 echo "fresults='$fres'" > $CDIR"/summary.txt"
1159 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1160 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1161 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1162 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1163
1164 for ex in $extra_runs ; do
1165 unset run
1166 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1167 # Create an output dir for each OPTFILE/tdir.ex combination
1168 rel_CDIR=$DRESULTS"/"$dir"."$ex
1169 mkdir $rel_CDIR
1170 CDIR=`pwd`"/$rel_CDIR"
1171 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1172 run_clean $dir/tr_run.$ex
1173 linkdata $dir/tr_run.$ex input.$ex input
1174 runmodel $dir/tr_run.$ex && run=Y \
1175 && results=`testoutput $dir tr_run.$ex ${ex}".txt"`
1176 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1177 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1178 fres="$fres.$ex"
1179 echo
1180 echo "$fres" >> $SUMMARY
1181 echo "fresults='$fres'" > $CDIR"/summary.txt"
1182 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1183 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1184 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1185 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1186 if test "x$POSTCLEAN" = xt ; then
1187 run_clean $dir/tr_run.$ex
1188 fi
1189 done
1190 else
1191 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1192 fres=$fres"$results $dir"
1193 echo
1194 echo "$fres" >> $SUMMARY
1195 echo "fresults='$fres'" > $CDIR"/summary.txt"
1196 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1197 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1198 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1199 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1200 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1201 >> $CDIR"/summary.txt"
1202 fi
1203
1204 #postclean $dir/$builddir
1205 if test "x$POSTCLEAN" = xt ; then
1206 makeclean $dir/$builddir \
1207 && run_clean $dir/$rundir
1208 fi
1209
1210 echo "-------------------------------------------------------------------------------"
1211
1212 done
1213
1214 printf "Start time: " >> $SUMMARY
1215 echo $start_date >> $SUMMARY
1216 printf "End time: " >> $SUMMARY
1217 date >> $SUMMARY
1218
1219 # If addresses were supplied and mpack built successfully, then try
1220 # to send email using mpack.
1221 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1222 echo "No results email was sent."
1223 else
1224 if test "x$HAVE_MPACK" = xt ; then
1225 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1226 && gzip $DRESULTS".tar" \
1227 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1228 RETVAL=$?
1229 if test "x$RETVAL" != x0 ; then
1230 echo
1231 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1232 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1233 echo " summary of results from the directory \"$DRESULTS\"."
1234 echo
1235 else
1236 echo
1237 echo "An email containing results was sent to the following addresses:"
1238 echo " \"$ADDRESSES\""
1239 echo
1240 fi
1241 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1242 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1243 fi
1244 fi
1245
1246 rm -f tr_cmpnum.c tr_cmpnum
1247
1248 if test "x$CLEANUP" != xt ; then
1249 cat $SUMMARY | sed 's/ -- -- -- --//g'
1250 if test -e tr_out.txt ; then
1251 mv tr_out.txt tr_out.txt.old
1252 fi
1253 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1254 fi
1255
1256 if test "x$DELDIR" = xt ; then
1257 rm -rf $DRESULTS
1258 fi

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