/[MITgcm]/MITgcm/verification/testreport
ViewVC logotype

Contents of /MITgcm/verification/testreport

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph


Revision 1.89 - (show annotations) (download)
Wed Jan 10 22:50:09 2007 UTC (13 years, 4 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58u_post
Changes since 1.88: +36 -38 lines
add option: -skd|-skipdir to skip some test (usefull since full list is
 getting long);
remove "show_help" (not used, not up-to-date, was copied from testscript ?).

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.88 2006/08/29 00:18:35 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-of=|-optfile=)STRING list of optfiles to use"
19 echo " (-a|-addr) STRING list of email recipients"
20 echo " (DEF=\"edhill@mitgcm.org\")"
21 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
22 echo " (recognized groups: basic, tutorials)"
23 echo " (DEF=\"\" which test all)"
24 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
25 echo " (DEF=\"\" which test all)"
26 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
27 echo " Bourne-compatible \"sh\" shell"
28 echo " (DEF=\"\" for \"bash\")"
29 echo " (-adm|-ad) perform an adjoint run"
30 echo " (-command) STRING command to run"
31 echo " (DEF=\"make output.txt\")"
32 echo " (-m|-make) STRING command to use for \"make\""
33 echo " (DEF=\"make\")"
34 echo " (-odir) STRING used to build output directory name"
35 echo " (DEF=\"hostname\")"
36 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
37 echo " (DEF=\"1 2 3 4 5\")"
38 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
39 echo " (-clean) *ONLY* run \"make CLEAN\""
40 echo " (-q|-quick) same as \"-nogenmake -noclean -nodepend\""
41 echo " (-ng|-nogenmake) skip the genmake stage"
42 echo " (-nc|-noclean) skip the \"make clean\" stage"
43 echo " (-nd|-nodepend) skip the \"make depend\" stage"
44 echo " (-dd|-deldir) on success, delete the output directory"
45 echo
46 echo "and where STRING can be a whitespace-delimited list"
47 echo "such as:"
48 echo
49 echo " -t 'exp0 exp2 exp3' "
50 echo " -addr='abc@123.com testing@home.org'"
51 echo
52 echo "provided that the expression is properly quoted within the current"
53 echo "shell (note the use of single quotes to protect white space)."
54 echo
55 exit 1
56 }
57
58 # build the mpack utility
59 build_mpack()
60 {
61 printf "building the mpack utility... "
62 if test ! -x "$MPACKDIR/mpack" ; then
63 if test ! -d $MPACKDIR ; then
64 echo
65 echo "Error: can't find \"$MPACKDIR\""
66 echo " are you sure this program is being run in the correct "
67 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
68 echo
69 HAVE_MPACK=f
70 fi
71 printf "building mpack... "
72 if test "x$CC" = x ; then
73 export CC=cc
74 fi
75 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
76 RETVAL=$?
77 if test "x$RETVAL" != x0 ; then
78 echo
79 echo "Error building the mpack tools at: $MPACK_DIR"
80 echo
81 HAVE_MPACK=f
82 else
83 rm -f tr_build_mpack.out
84 HAVE_MPACK=t
85 fi
86 else
87 HAVE_MPACK=t
88 fi
89 echo "OK"
90 }
91
92 testoutput_for_prop()
93 {
94 # testoutput_for_prop dir s1 label subdir extension
95 #
96 # compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt
97 # using search strings s1 and text label
98
99 if [ $debug -gt 0 ]; then
100 echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2
101 fi
102 if [ -r $1/$4/$OUTPUTFILE ]; then
103 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
104 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
105 if [ $lncntA -lt 3 ]; then
106 if [ $verbose -gt 0 ]; then
107 echo Not enough lines of output when searching for "$2" 1>&2
108 fi
109 return 99
110 fi
111 else
112 echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2
113 return 99
114 fi
115 if [ $debug -gt 0 ]; then
116 echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2
117 fi
118 grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt
119 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
120 if [ $lncntB -lt 3 ]; then
121 if [ $verbose -gt 0 ]; then
122 echo Not enough lines of output when searching for "$2" 1>&2
123 fi
124 return 99
125 fi
126 if [ $lncntA -ne $lncntB ]; then
127 if [ $verbose -gt 0 ]; then
128 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
129 fi
130 return 99
131 fi
132 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
133 if [ $has_nan -gt 0 ] ; then
134 echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2
135 return 99
136 fi
137 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
138 if [ $has_inf -gt 0 ] ; then
139 echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2
140 return 99
141 fi
142 if [ $debug -gt 0 ]; then
143 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
144 fi
145 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
146 if [ $debug -gt 0 ]; then
147 echo testoutput_for_prop: compare_lines 1>&2
148 fi
149 if [ $verbose -gt 1 ]; then
150 cat tmp3.txt 1>&2
151 fi
152 echo "-1" >> tmp3.txt
153 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
154 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
155 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
156 if [ $digits_of_similarity -eq 99 ]; then
157 if [ $verbose -gt 0 ]; then
158 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
159 fi
160 digits_of_similarity=99
161 else
162 if [ $verbose -gt 0 ]; then
163 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
164 fi
165 fi
166 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
167
168 return $digits_of_similarity
169 }
170
171 dashnum()
172 {
173 # dashnum n1 n2 n3 ...
174 #
175 # print numbers using %3i format or "--" if number = 99
176
177 for num in $@ ; do
178 if [ $num = 99 ]; then
179 printf ' --'
180 else
181 printf '%3i' $num
182 fi
183 done
184 }
185
186 testoutput_ad()
187 {
188 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
189 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt
190 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
191 grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt
192 join t05.txt t15.txt > t5.txt
193 join t06.txt t16.txt > t6.txt
194 echo "-1" >> t5.txt
195 echo "-1" >> t6.txt
196 digits_5=`./tmp_cmpnum < t5.txt`
197 digits_6=`./tmp_cmpnum < t6.txt`
198 dashnum $digits_5 $digits_6
199 rm -f t[01][56].txt t[56].txt
200 }
201
202 check_for_add_mon_output()
203 {
204 # Check for additional types of monitor output
205 if test "x$1" = x ; then
206 return
207 fi
208
209 for ii in $PTRACERS_NUM ; do
210 eval "HAVE_PTR0"$ii"=f"
211 done
212
213 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
214 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
215 for ii in $PTRACERS_NUM ; do
216 for jj in $ptr_add ; do
217 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
218 tst=`grep $name $1 | wc -l | awk '{print $1}'`
219 if test ! "x$tst" = x0 ; then
220 eval "HAVE_PTR0"$ii"=t"
221 fi
222 done
223 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
224 done
225 }
226
227 testoutput()
228 {
229 # testoutput directory subdir extension
230 #
231 # test output in "directory"
232 if test "x$ADM" = x ; then
233 if [ $debug -gt 0 ]; then
234 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
235 fi
236 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
237 if [ $debug -gt 0 ]; then
238 echo testoutput: cg2dres=$cg2dres 1>&2
239 fi
240 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
241 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
242 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
243 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
244 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
245 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
246 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
247 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
248 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
249 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
250 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
251 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
252 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
253 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
254 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
255 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
256
257 # This is for PTRACERS
258 for ii in $PTRACERS_NUM ; do
259 eval `echo "p0"$ii"_min=99"`
260 eval `echo "p0"$ii"_max=99"`
261 eval `echo "p0"$ii"_mean=99"`
262 eval `echo "p0"$ii"_sd=99"`
263 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
264 #echo 'tst = '$tst
265 if test "x$tst" = xt ; then
266 a="trcstat_ptracer0"
267 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
268 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
269 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
270 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
271 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
272 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
273 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
274 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
275 fi
276 done
277
278 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
279 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
280 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
281 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
282 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
283 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
284 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
285
286 eval "dashnum $allargs"
287
288 else
289 testoutput_ad $1 $2 "precision_grdchk_result"
290 fi
291 }
292
293 genmakemodel()
294 {
295 # genmakemodel directory
296 if test "x$NOGENMAKE" = xt ; then
297 echo "genmake skipped!"
298 else
299 if test "x$BASH" = x ; then
300 GENMAKE2="../../../tools/genmake2"
301 else
302 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
303 fi
304 (
305 cd $1;
306 command="$GENMAKE2 -ds -m $MAKE"
307 if test "x$ADM" = x ; then
308 command="$command --mods=../code"
309 else
310 command="$command --mods=../code_ad"
311 fi
312 if test "x$OPTFILE" != xNONE ; then
313 command="$command --optfile=$OPTFILE"
314 fi
315 if test "x$IEEE" != x ; then
316 command="$command -ieee"
317 fi
318 if test "x$MPI" = xt ; then
319 command="$command -mpi"
320 fi
321 printf 'genmake ... ' 1>&2
322 $command > make.log 2>&1
323 RETVAL=$?
324 # Reduce the size of the testing emails!
325 head -100 Makefile > $CDIR/Makefile_head
326 if test "x$RETVAL" != x0 ; then
327 tail make.log
328 echo "genmakemodel: genmake failed" 1>&2
329 cp genmake_* make.log $CDIR
330 return 1
331 else
332 echo "successful" 1>&2
333 fi
334 )
335 fi
336 }
337
338 makeclean()
339 {
340 # makeclean directory
341 if test "x$NOCLEAN" = xt ; then
342 echo "make Clean skipped!"
343 else
344 (
345 cd $1;
346 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
347 if test -r Makefile ; then
348 printf 'clean build-dir: make Clean ... ' 2>&1
349 $MAKE Clean >> make.log 2>&1
350 RETVAL=$?
351 if test "x$RETVAL" != x0 ; then
352 tail make.log
353 echo "makeclean: \"make Clean\" failed" 1>&2
354 cp make.log $CDIR"/make.log"
355 return 1
356 fi
357 fi
358 echo successful 1>&2
359 exit 0
360 )
361 fi
362 }
363
364 run_clean()
365 {
366 # run_clean directory
367 if test "x$NOCLEAN" = xt ; then
368 echo "run_clean skipped!"
369 else
370 (
371 cd $1;
372 printf 'clean run-dir ... ' 2>&1
373 # part of what is done after "make clean" when doing "make CLEAN"
374 find . -name "*.meta" -exec rm {} \;
375 find . -name "*.data" -exec rm {} \;
376 find . -name "fort.*" -exec rm {} \;
377 find . -type l -exec rm {} \;
378 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
379 rm -rf mnc_test_*
380 echo successful 1>&2
381 exit 0
382 )
383 fi
384 }
385
386 makedependmodel()
387 {
388 # makedependmodel directory
389 if test "x$NODEPEND" = xt ; then
390 echo "make depend skipped!"
391 else
392 (
393 cd $1;
394 printf 'make depend ... ' 1>&2
395 $MAKE depend >> make.log 2>&1
396 RETVAL=$?
397 if test "x$RETVAL" != x0 ; then
398 tail make.log
399 echo "makedependmodel: make depend failed" 1>&2
400 cp make.log $CDIR"/make.log"
401 return 1
402 else
403 echo successful 1>&2
404 fi
405 )
406 fi
407 }
408
409 makemodel()
410 {
411 # makemodel directory
412 (
413 cd $1;
414 if test -r Makefile ; then
415 printf 'make ... ' 1>&2
416 if test "x$ADM" = x ; then
417 if test "x$JOBS" = x ; then
418 $MAKE >> make.log 2>&1
419 else
420 $MAKE -j $JOBS >> make.log 2>&1
421 fi
422 else
423 $MAKE adall >> make.log 2>&1
424 fi
425 RETVAL=$?
426 if test "x$RETVAL" != x0 ; then
427 tail make.log
428 echo failed 1>&2
429 cp make.log $CDIR"/make.log"
430 return 1
431 else
432 echo successful 1>&2
433 fi
434 fi
435 )
436 }
437
438 symlink_mpifiles()
439 {
440 # Put special links so that MPI specific files are used
441 # This MUST be invoked between makeclean and makelinks because
442 # the Makefile will link to non-mpi files by default
443
444 dir=$1
445 code_dir=$2
446 BUILD_DIR=$dir/$3
447 CODE_DIR=$dir/$code_dir
448
449 # These are files that should replace their counter-part when using -mpi
450 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
451
452 # Is this an MPI run?
453 if test "x$MPI" = xt ; then
454 # YES: We symbolically link these files to the build
455 # dir so long as there is no real file in place
456 for ii in $MPI_FILES ; do
457 i=`echo $ii | sed 's:^\./::'`
458 name=`echo $i | sed 's:_mpi::' `
459 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
460 RETVAL=$?
461 if test "x$RETVAL" != x0 ; then
462 if ! test -f $BUILD_DIR/$i ; then
463 #echo Linking $name to $i
464 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
465 fi
466 fi
467 done
468 else
469 # NO: We undo any _mpi symbolically linked files
470 for ii in $MPI_FILES ; do
471 i=`echo $ii | sed 's:^\./::'`
472 name=`echo $i | sed 's:_mpi::' `
473 if test -L $BUILD_DIR/$name ; then
474 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
475 RETVAL=$?
476 if test "x$RETVAL" = x0 ; then
477 #echo Un-linking $name from $linktarg
478 rm -f $BUILD_DIR/$name
479 fi
480 fi
481 done
482 fi
483
484 }
485
486 linkdata()
487 {
488 # linkdata run_dir input_dir_1 input_dir_2 ...
489 #
490 # symbolically link data files to run directory
491 if test -d $1 ; then
492 (
493 cd $1 ; shift
494 if test -r "../"$1"/eedata.mth" ; then
495 # found eedata.mth in 1rst input dir and it is readable
496 if test "x$MULTI_THREAD" = "xt" ; then
497 # multi-threaded test: remove symbolic link & link eedata.mth
498 if test -h eedata ; then rm -f eedata ; fi
499 if test ! -r eedata ; then
500 ln -sf "../"$1"/eedata.mth" eedata ;
501 printf 'eedata.mth ' 1>&2
502 fi
503 else
504 # not multi-threaded test: remove eedata symbolic link
505 if test -h eedata ; then rm -f eedata ; fi
506 fi
507 fi
508 for ldir in $* ; do
509 if test -d "../"$ldir ; then
510 printf 'ldir='${ldir} 1>&2
511 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
512 for i in $files ; do
513 if test ! -d "../"$ldir/$i ; then
514 if test ! -r $i ; then
515 printf ' '$i 1>&2
516 ln -sf "../"$ldir"/"$i $i
517 fi
518 fi
519 done
520 if test -x "../"$ldir"/"prepare_run ; then
521 "../"$ldir"/"prepare_run
522 fi
523 printf ' ; ' 1>&2
524 fi
525 done
526 )
527 fi
528 }
529
530 runmodel()
531 {
532 # runmodel directory
533 #
534 # runs "$COMMAND in "directory"
535 # (where "$COMMAND" is relative to "directory")
536 (
537 cd $1
538 printf 'runmodel in %s ...' $1 1>&2
539 # make output.txt
540 echo
541 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
542 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
543 ln -sf "../"$builddir"/"$EXECUTABLE .
544 fi
545 if test ! -x $EXECUTABLE ; then
546 rm -f run.log ; touch run.log
547 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
548 echo " no executable:" $EXECUTABLE >> run.log
549 RETVAL=8
550 ENDVAL=-1
551 else
552 if test $OUTPUTFILE -ot $EXECUTABLE ; then
553 rm -f run.log ; touch run.log
554 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
555 ( eval $COMMAND ) >> run.log 2>&1
556 RETVAL=$?
557 else
558 RETVAL=0
559 if test -f run.log ; then
560 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
561 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
562 else
563 touch run.log
564 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
565 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
566 echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
567 fi
568 fi
569 ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
570 fi
571 rm -f run.log_00
572 #if test "x$RETVAL" = x0 ; then
573 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
574 tail run.log
575 echo successful 1>&2
576 # === Reduce the size of the testing emails!
577 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
578 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
579 return 0
580 else
581 tail run.log
582 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
583 cp run.log $CDIR"/run.log"
584 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
585 return 1
586 fi
587 )
588 }
589
590 createcodelet()
591 {
592 # create codelet for comparing model output
593
594 printf "creating the comparison code... "
595 cat > tmp_cmpnum.c <<EOF
596 #include <stdio.h>
597 #include <math.h>
598 int main( int argc, char** argv ) {
599 int linnum,best,lncnt;
600 double a,b,abave,relerr;
601 best = -22;
602 lncnt = 0;
603 while( 1 & (lncnt+=1) < 999 ) {
604 scanf("%d", &linnum);
605 if (linnum == -1) break;
606 scanf("%lf", &a); scanf("%lf", &b);
607 abave = 0.5*(fabs(a)+fabs(b));
608 if (abave > 0.0) {
609 relerr=fabs(a-b)/abave;
610 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
611 else { linnum = -16 ; }
612 best = (best > linnum) ? best : linnum;
613 }
614 }
615 if (lncnt == 999) best=-29;
616 printf("%d\n", -best);
617 return 0;
618 }
619 EOF
620 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
621
622 if [ -x ./tmp_cmpnum ]; then
623 echo "OK"
624 return 0
625 else
626 echo
627 echo "ERROR: failed to compile comparison code -- please specify"
628 echo " a C compiler using the CC environment variable."
629 exit 1
630 fi
631 }
632
633 formatresults()
634 {
635 # formatresults expt genmake depend make run results*
636
637 nm=$1
638 printf '%s %s %s %s' $2 $3 $4 $5
639 shift; shift; shift; shift; shift;
640 printf '%3s' $@
641
642 if [ $1 = '--' ]; then
643 printf ' N/O '
644 else
645 if [ $1 -gt 12 ]; then
646 printf ' pass'
647 else
648 printf ' FAIL'
649 fi
650 fi
651 printf ' %s' $nm
652 printf '\n'
653
654 }
655
656 scandirs()
657 {
658 if [ $# -eq 1 ]; then
659 for arg in * ; do
660 test -d $arg/$1 && echo $arg
661 done
662 else
663 echo $*
664 fi
665 }
666
667
668 ###############################################################################
669
670
671 # Default properties
672 debug=0
673 verbose=1
674 clean=0
675 expts=''
676 # ieee=1
677
678 IEEE=true
679 if test "x$MITGCM_IEEE" != x ; then
680 IEEE=$MITGCM_IEEE
681 fi
682
683
684 CLEANUP=f
685 QUICK=f
686 NOGENMAKE=f
687 NOCLEAN=f
688 NODEPEND=f
689 POSTCLEAN=f
690
691 BASH=
692 OPTFILE=NONE
693 ADDRESSES=
694 TESTDIRS=
695 SKIPDIRS=
696 MPACKDIR="../tools/mpack-1.6"
697 HAVE_MPACK=
698 MPACK="$MPACKDIR/mpack"
699 COMMAND=
700 if test "x$MAKE" = x ; then
701 MAKE=make
702 fi
703 if test "x$CC" = x ; then
704 CC=cc
705 fi
706 JOBS=
707 MPI=f
708 MULTI_THREAD=f
709 OUTDIR=
710 DELDIR=
711
712 ADM=
713
714 # Additional monitor types
715 PTRACERS_NUM="1 2 3 4 5"
716
717 printf "parsing options... "
718
719 ac_prev=
720 for ac_option ; do
721
722 # If the previous option needs an argument, assign it.
723 if test -n "$ac_prev"; then
724 eval "$ac_prev=\$ac_option"
725 ac_prev=
726 continue
727 fi
728
729 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
730
731 case $ac_option in
732
733 -help | --help | -h | --h)
734 usage ;;
735
736 -optfile | --optfile | -of | --of)
737 ac_prev=OPTFILE ;;
738 -optfile=* | --optfile=* | -of=* | --of=*)
739 OPTFILE=$ac_optarg ;;
740
741 -addr | --addr | -a | --a)
742 ac_prev=ADDRESSES ;;
743 -addr=* | --addr=*)
744 ADDRESSES=$ac_optarg ;;
745
746 -tdir | --tdir | -t | --t)
747 ac_prev=TESTDIRS ;;
748 -tdir=* | --tdir=*)
749 TESTDIRS=$ac_optarg ;;
750
751 -skipdir | --skipdir | -skd | --skd)
752 ac_prev=SKIPDIRS ;;
753 -skipdir=* | --skipdir=*)
754 SKIPDIRS=$ac_optarg ;;
755
756 -bash | --bash | -b | --b)
757 ac_prev=BASH ;;
758 -bash=* | --bash=*)
759 BASH=$ac_optarg ;;
760
761 -command | --command | -c | --c)
762 ac_prev=COMMAND ;;
763 -command=* | --command=*)
764 COMMAND=$ac_optarg ;;
765
766 -make | --make | -m | --m)
767 ac_prev=MAKE ;;
768 -make=* | --make=*)
769 MAKE=$ac_optarg ;;
770
771 -odir | --odir)
772 ac_prev=OUTDIR ;;
773 -odir=* | --odir=*)
774 OUTDIR=$ac_optarg ;;
775
776 -ptracers | --ptracers | -ptr | --ptr)
777 ac_prev=PTRACERS_NUM ;;
778 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
779 PTRACERS_NUM=$ac_optarg ;;
780
781 -j) ac_prev=JOBS ;;
782 -j=*) JOBS=$ac_optarg ;;
783
784 -clean | --clean)
785 CLEANUP=t ; DELDIR=t ;;
786
787 -quick | --quick | -q | --q)
788 QUICK=t ;;
789 -nogenmake | --nogenmake | -ng | --ng)
790 NOGENMAKE=t ;;
791 -noclean | --noclean | -nc | --nc)
792 NOCLEAN=t ;;
793 -nodepend | --nodepend | -nd | --nd)
794 NODEPEND=t ;;
795
796 -postclean | --postclean | -pc | --pc)
797 POSTCLEAN=t ;;
798
799 -mpi) MPI=t ;;
800
801 -mth) MULTI_THREAD=t ;;
802
803 -adm | -ad) ADM=t ;;
804
805 -ieee) IEEE=true ;;
806 -noieee) IEEE= ;;
807
808 -verbose) verbose=2 ;;
809 -debug) debug=1 ;;
810 -quiet) verbose=0 ;;
811
812 -deldir | -dd) DELDIR=t ;;
813
814 -*)
815 echo "Error: unrecognized option: "$ac_option
816 usage
817 ;;
818
819 *)
820 echo "Error: unrecognized argument: "$ac_option
821 usage
822 ;;
823
824 esac
825
826 done
827
828 if test "x$QUICK" = xt ; then
829 NOGENMAKE=t
830 NOCLEAN=t
831 NODEPEND=t
832 fi
833
834 if test "x$TESTDIRS" = x ; then
835 if test "x$ADM" = xt ; then
836 LIST=`scandirs results_ad`
837 else
838 LIST=`scandirs results`
839 fi
840 else
841 #- expand group of experiments:
842 LIST=" "
843 for xx in $TESTDIRS
844 do
845 case $xx in
846 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
847 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
848 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
849 ;;
850 'tutorials')
851 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
852 *) LIST=${LIST}" "$xx ;;
853 esac
854 done
855 fi
856 #echo 'LIST='${LIST}'<'
857 #- skip dirs, remove duplicate and non-directory:
858 TESTDIRS=" "
859 count=0
860 for xx in $LIST
861 do
862 yy=`echo $SKIPDIRS | grep -c $xx`
863 if test $yy = 0 ; then
864 if test -d $xx ; then
865 yy=`echo $TESTDIRS | grep -c $xx`
866 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
867 else count=1 ;
868 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
869 fi
870 else
871 if test $count = 1 ; then echo -n ", \"$xx\""
872 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
873 fi
874 fi
875 done
876 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
877 #echo 'TESTDIRS='${TESTDIRS}'<'
878
879 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
880 OPTFILE=$MITGCM_OF
881 fi
882
883 if test "x$ADM" = xt ; then
884 EXECUTABLE="mitgcmuv_ad"
885 OUTPUTFILE="output_adm.txt"
886 else
887 EXECUTABLE="mitgcmuv"
888 OUTPUTFILE="output.txt"
889 fi
890
891 if test "x$COMMAND" = x ; then
892 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
893 fi
894 if test "x$MPI" = xt ; then
895 OUTPUTFILE="STDOUT.0000"
896 fi
897
898 #echo "OK"
899 echo "OK (COMMAND= $COMMAND )"
900
901 # create the FORTRAN comparison code
902 createcodelet
903
904 # build the mpack utility
905 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
906 echo "skipping mpack build"
907 else
908 build_mpack
909 fi
910
911 # Create a uniquely named directory to store results
912 MACH=`hostname`
913 UNAMEA=`uname -a`
914 DATE=`date +%Y%m%d`
915 BASE="tr_"$MACH"_"$DATE"_"
916 if test "x$OUTDIR" != x ; then
917 BASE="tr_"$OUTDIR"_"$DATE"_"
918 fi
919 DNUM=0
920 DRESULTS="$BASE$DNUM"
921 while test -e $DRESULTS ; do
922 DNUM=$(( $DNUM + 1 ))
923 DRESULTS="$BASE$DNUM"
924 done
925 mkdir $DRESULTS
926 RETVAL=$?
927 if test "x$RETVAL" != x0 ; then
928 echo "ERROR: Can't create results directory \"./$DRESULTS\""
929 exit 1
930 fi
931 SUMMARY="$DRESULTS/summary.txt"
932 printf "Start time: " >> $SUMMARY
933 start_date=`date`
934 echo $start_date > $SUMMARY
935
936 of_path=
937 if test "x$OPTFILE" != xNONE ; then
938 if test -r $OPTFILE ; then
939 # get the path
940 path=${OPTFILE%/*}
941 if test "x$path" = x ; then
942 of_path=`pwd`
943 else
944 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
945 fi
946 file=${OPTFILE##*/}
947 OPTFILE=$of_path/$file
948 cp $OPTFILE $DRESULTS
949 echo >> $SUMMARY
950 echo " OPTFILE=$OPTFILE" >> $SUMMARY
951 else
952 echo | tee $SUMMARY
953 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
954 exit 1
955 fi
956 else
957 echo >> $SUMMARY
958 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
959 echo " so the genmake default will be used." >> $SUMMARY
960 fi
961 echo
962 echo >> $SUMMARY
963 if test "x$ADM" = x ; then
964 line_0=" ----T----- ----S----- ----U----- ----V-----"
965 line_1="G D M c m s m s m s m s"
966 line_2="E p a R g m m e . m m e . m m e . m m e ."
967 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
968 line_4="2 d e n d n x n . n x n . n x n . n x n ."
969 for ii in $PTRACERS_NUM ; do
970 # tst=`eval 'echo $HAVE_PTR0'$ii`
971 # if test "x$tst" = xt ; then
972 line_0="$line_0 --PTR 0"$ii"--"
973 line_1="$line_1 m s"
974 line_2="$line_2 m m e ."
975 line_3="$line_3 i a a d"
976 line_4="$line_4 n x n ."
977 # fi
978 done
979 echo "$line_0" | tee -a $SUMMARY
980 echo "$line_1" | tee -a $SUMMARY
981 echo "$line_2" | tee -a $SUMMARY
982 echo "$line_3" | tee -a $SUMMARY
983 echo "$line_4" | tee -a $SUMMARY
984 echo " " | tee -a $SUMMARY
985 else
986 echo "ADJOINT=true" >> $SUMMARY
987 echo >> $SUMMARY
988 cat << EOF | tee -a $SUMMARY
989 G D M C G
990 E p a R o r
991 N n k u s a
992 2 d e n t d
993
994 EOF
995 fi
996
997 # ...and each test directory...
998 for dir in $TESTDIRS ; do
999
1000 # Cleanup only!
1001 if test "x$CLEANUP" = xt ; then
1002 if test -r $dir/build/Makefile ; then
1003 echo ' ------ clean dir:' $dir/build
1004 ( cd $dir/build ; make CLEAN )
1005 fi
1006 if test -d $dir/run/CVS ; then
1007 echo ' ------ clean dir:' $dir/run
1008 run_clean $dir/run
1009 fi
1010 (
1011 cd $dir
1012 rm -rf tr_run.*
1013 )
1014 continue
1015 fi
1016
1017 # Verify that the testdir exists and contains previous
1018 # results in the correct location--or skip this directory!
1019 fout=
1020 if test "x$ADM" = x ; then
1021 fout=$dir"/results/output.txt"
1022 else
1023 fout=$dir"/results_ad/output_adm.txt"
1024 fi
1025 if test ! -r $fout ; then
1026 echo "can't read \"$fout\" -- skipping $dir"
1027 continue
1028 fi
1029 if test "x$ADM" = x ; then
1030 check_for_add_mon_output $fout
1031 fi
1032
1033 # Check for additional types of monitor output
1034
1035 builddir="build"
1036 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1037 rundir="run"
1038 #rundir=$builddir
1039 if test ! -d $dir/$rundir ; then
1040 rundir=$builddir
1041 fi
1042
1043 if test "x$ADM" = x ; then
1044 code_dir=code
1045 CODE_DIR=$dir/code
1046 input_dirs='input'
1047 else
1048 code_dir=code_ad
1049 CODE_DIR=$dir/code_ad
1050 input_dirs='input_ad input'
1051 fi
1052 BUILD_DIR=$dir/$builddir
1053
1054 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1055 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1056 continue
1057 fi
1058 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1059 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1060 continue
1061 fi
1062
1063 # Check whether there are "extra runs" for this testdir
1064 extra_runs=
1065 if test "x$ADM" = x ; then
1066 ex_run_dirs=`( cd $dir ; echo input.* )`
1067 #echo "ex_run_dirs='$ex_run_dirs'"
1068 for exd in $ex_run_dirs ; do
1069 name=`echo $exd | sed -e 's/input.//g'`
1070 outf="$dir/results/output.$name.txt"
1071 if test -f $outf -a -r $outf ; then
1072 if test "x$MULTI_THREAD" = "xt" ; then
1073 if test -r $dir"/"$exd"/eedata.mth" ; then
1074 extra_runs="$extra_runs $name"
1075 #else echo $dir"/"$exd"/eedata.mth: not found"
1076 fi
1077 else
1078 extra_runs="$extra_runs $name"
1079 fi
1080 fi
1081 done
1082 fi
1083
1084 echo "-------------------------------------------------------------------------------"
1085 echo
1086 if test "x$extra_runs" = "x" ; then
1087 echo "Experiment: $dir"
1088 else
1089 echo "Experiment: $dir ; extra_runs=$extra_runs"
1090 fi
1091 echo
1092 unset genmake makedepend make run
1093 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1094
1095 # Create an output dir for each OPTFILE/tdir combination
1096 rel_CDIR=$DRESULTS"/"$dir
1097 mkdir $rel_CDIR
1098 CDIR=`pwd`"/$rel_CDIR"
1099
1100 if test "x$CLEANUP" = xt ; then
1101 echo '====>>> this is to check that we never go through this part <<< ==='
1102 makeclean $dir/$builddir \
1103 && run_clean $dir/$rundir
1104 else
1105 genmakemodel $dir/$builddir && genmake=Y \
1106 && makeclean $dir/$builddir \
1107 && run_clean $dir/$rundir \
1108 && symlink_mpifiles $dir $code_dir $builddir \
1109 && makedependmodel $dir/$builddir && makedepend=Y \
1110 && makemodel $dir/$builddir && make=Y \
1111 && linkdata $dir/$rundir $input_dirs \
1112 && runmodel $dir/$rundir && run=Y \
1113 && results=`testoutput $dir $rundir "txt"`
1114 fi
1115
1116 echo
1117 if test "x$ADM" = x ; then
1118 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1119 echo
1120 echo "$fres" >> $SUMMARY
1121 echo "fresults='$fres'" > $CDIR"/summary.txt"
1122 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1123 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1124 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1125 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1126
1127 for ex in $extra_runs ; do
1128 unset run
1129 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1130 # Create an output dir for each OPTFILE/tdir.ex combination
1131 rel_CDIR=$DRESULTS"/"$dir"."$ex
1132 mkdir $rel_CDIR
1133 CDIR=`pwd`"/$rel_CDIR"
1134 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1135 run_clean $dir/tr_run.$ex
1136 linkdata $dir/tr_run.$ex input.$ex input
1137 runmodel $dir/tr_run.$ex && run=Y \
1138 && results=`testoutput $dir tr_run.$ex ${ex}".txt"`
1139 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1140 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1141 fres="$fres.$ex"
1142 echo
1143 echo "$fres" >> $SUMMARY
1144 echo "fresults='$fres'" > $CDIR"/summary.txt"
1145 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1146 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1147 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1148 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1149 if test "x$POSTCLEAN" = xt ; then
1150 run_clean $dir/tr_run.$ex
1151 fi
1152 done
1153 else
1154 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1155 fres=$fres"$results $dir"
1156 echo
1157 echo "$fres" >> $SUMMARY
1158 echo "fresults='$fres'" > $CDIR"/summary.txt"
1159 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1160 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1161 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1162 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1163 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1164 >> $CDIR"/summary.txt"
1165 fi
1166
1167 #postclean $dir/$builddir
1168 if test "x$POSTCLEAN" = xt ; then
1169 makeclean $dir/$builddir \
1170 && run_clean $dir/$rundir
1171 fi
1172
1173 echo "-------------------------------------------------------------------------------"
1174
1175 done
1176
1177 printf "Start time: " >> $SUMMARY
1178 echo $start_date >> $SUMMARY
1179 printf "End time: " >> $SUMMARY
1180 date >> $SUMMARY
1181
1182 # If addresses were supplied and mpack built successfully, then try
1183 # to send email using mpack.
1184 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1185 echo "No results email was sent."
1186 else
1187 if test "x$HAVE_MPACK" = xt ; then
1188 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1189 && gzip $DRESULTS".tar" \
1190 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1191 RETVAL=$?
1192 if test "x$RETVAL" != x0 ; then
1193 echo
1194 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1195 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1196 echo " summary of results from the directory \"$DRESULTS\"."
1197 echo
1198 else
1199 echo
1200 echo "An email containing results was sent to the following addresses:"
1201 echo " \"$ADDRESSES\""
1202 echo
1203 fi
1204 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1205 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1206 fi
1207 fi
1208
1209 # rm -f tmp_cmpnum.f a.out
1210 rm -f tmp_cmpnum.c tmp_cmpnum
1211
1212 if test "x$CLEANUP" != xt ; then
1213 cat $SUMMARY | sed 's/ -- -- -- --//g'
1214 if test -e tr_out.txt ; then
1215 mv tr_out.txt tr_out.txt.old
1216 fi
1217 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1218 fi
1219
1220 if test "x$DELDIR" = xt ; then
1221 rm -rf $DRESULTS
1222 fi

  ViewVC Help
Powered by ViewVC 1.1.22