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Revision 1.80 - (show annotations) (download)
Thu Jun 8 21:39:35 2006 UTC (17 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint58i_post
Changes since 1.79: +9 -7 lines
ad testing: start to link files from ../input_ad and then from ../input
 (and not the reverse)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.79 2006/06/07 01:20:26 heimbach Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mpi) use MPI input files"
15 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
16 echo " (DEF=\"-ieee\")"
17 echo " (-optfile=|-of=)STRING list of optfiles to use"
18 echo " (-a|-addr) STRING list of email recipients"
19 echo " (DEF=\"edhill@mitgcm.org\")"
20 echo " (-t|-tdir) STRING list of test dirs to use"
21 echo " (DEF=\"\" which builds all)"
22 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
23 echo " Bourne-compatible \"sh\" shell"
24 echo " (DEF=\"\" for \"bash\")"
25 echo " (-adm|-ad) perform an adjoint run"
26 echo " (-command) STRING command to run"
27 echo " (DEF=\"make output.txt\")"
28 echo " (-m|-make) STRING command to use for \"make\""
29 echo " (DEF=\"make\")"
30 echo " (-odir) STRING used to build output directory name"
31 echo " (DEF=\"hostname\")"
32 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
33 echo " (DEF=\"1 2 3 4 5\")"
34 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
35 echo " (-clean) *ONLY* run \"make CLEAN\""
36 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
37 echo " (-nogenmake|-ng) skip the genmake stage"
38 echo " (-noclean|-nc) skip the \"make clean\" stage"
39 echo " (-nodepend|-nd) skip the \"make depend\" stage"
40 echo " (-deldir|-dd) on success, delete the output directory"
41 echo
42 echo "and where STRING can be a whitespace-delimited list"
43 echo "such as:"
44 echo
45 echo " -t 'exp0 exp2 exp3' "
46 echo " -addr='abc@123.com testing@home.org'"
47 echo
48 echo "provided that the expression is properly quoted within the current"
49 echo "shell (note the use of single quotes to protect white space)."
50 echo
51 exit 1
52 }
53
54 # build the mpack utility
55 build_mpack()
56 {
57 printf "building the mpack utility... "
58 if test ! -x "$MPACKDIR/mpack" ; then
59 if test ! -d $MPACKDIR ; then
60 echo
61 echo "Error: can't find \"$MPACKDIR\""
62 echo " are you sure this program is being run in the correct "
63 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
64 echo
65 HAVE_MPACK=f
66 fi
67 printf "building mpack... "
68 if test "x$CC" = x ; then
69 export CC=cc
70 fi
71 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
72 RETVAL=$?
73 if test "x$RETVAL" != x0 ; then
74 echo
75 echo "Error building the mpack tools at: $MPACK_DIR"
76 echo
77 HAVE_MPACK=f
78 else
79 rm -f tr_build_mpack.out
80 HAVE_MPACK=t
81 fi
82 else
83 HAVE_MPACK=t
84 fi
85 echo "OK"
86 }
87
88 testoutput_for_prop()
89 {
90 # testoutput_for_prop dir s1 label subdir extension
91 #
92 # compares files in $dir/$subdir/output.txt and $dir/results/output.txt
93 # using search strings s1 and text label
94
95 if [ $debug -gt 0 ]; then
96 echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
97 fi
98 if [ -r $1/$4/output.txt ]; then
99 grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
100 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
101 if [ $lncntA -lt 3 ]; then
102 if [ $verbose -gt 0 ]; then
103 echo Not enough lines of output when searching for "$2" 1>&2
104 fi
105 return 99
106 fi
107 else
108 echo testoutput_for_prop: output.txt from model run was not readable 1>&2
109 return 99
110 fi
111 if [ $debug -gt 0 ]; then
112 echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2
113 fi
114 grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt
115 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
116 if [ $lncntB -lt 3 ]; then
117 if [ $verbose -gt 0 ]; then
118 echo Not enough lines of output when searching for "$2" 1>&2
119 fi
120 return 99
121 fi
122 if [ $lncntA -ne $lncntB ]; then
123 if [ $verbose -gt 0 ]; then
124 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
125 fi
126 return 99
127 fi
128 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
129 if [ $has_nan -gt 0 ] ; then
130 echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2
131 return 99
132 fi
133 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
134 if [ $has_inf -gt 0 ] ; then
135 echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2
136 return 99
137 fi
138 if [ $debug -gt 0 ]; then
139 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
140 fi
141 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
142 if [ $debug -gt 0 ]; then
143 echo testoutput_for_prop: compare_lines 1>&2
144 fi
145 if [ $verbose -gt 1 ]; then
146 cat tmp3.txt 1>&2
147 fi
148 echo "-1" >> tmp3.txt
149 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
150 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
151 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
152 if [ $digits_of_similarity -eq 99 ]; then
153 if [ $verbose -gt 0 ]; then
154 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
155 fi
156 digits_of_similarity=99
157 else
158 if [ $verbose -gt 0 ]; then
159 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
160 fi
161 fi
162 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
163
164 return $digits_of_similarity
165 }
166
167 dashnum()
168 {
169 # dashnum n1 n2 n3 ...
170 #
171 # print numbers using %3i format or "--" if number = 99
172
173 for num in $@ ; do
174 if [ $num = 99 ]; then
175 printf ' --'
176 else
177 printf '%3i' $num
178 fi
179 done
180 }
181
182 testoutput_ad()
183 {
184 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
185 grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt
186 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
187 grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt
188 join t05.txt t15.txt > t5.txt
189 join t06.txt t16.txt > t6.txt
190 echo "-1" >> t5.txt
191 echo "-1" >> t6.txt
192 digits_5=`./tmp_cmpnum < t5.txt`
193 digits_6=`./tmp_cmpnum < t6.txt`
194 dashnum $digits_5 $digits_6
195 rm -f t[01][56].txt t[56].txt
196 }
197
198 check_for_add_mon_output()
199 {
200 # Check for additional types of monitor output
201 if test "x$1" = x ; then
202 return
203 fi
204
205 for ii in $PTRACERS_NUM ; do
206 eval "HAVE_PTR0"$ii"=f"
207 done
208
209 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
210 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
211 for ii in $PTRACERS_NUM ; do
212 for jj in $ptr_add ; do
213 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
214 tst=`grep $name $1 | wc -l | awk '{print $1}'`
215 if test ! "x$tst" = x0 ; then
216 eval "HAVE_PTR0"$ii"=t"
217 fi
218 done
219 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
220 done
221 }
222
223 testoutput()
224 {
225 # testoutput directory subdir extension
226 #
227 # test output in "directory"
228 if test "x$ADM" = x ; then
229 if [ $debug -gt 0 ]; then
230 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
231 fi
232 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
233 if [ $debug -gt 0 ]; then
234 echo testoutput: cg2dres=$cg2dres 1>&2
235 fi
236 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
237 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
238 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
239 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
240 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
241 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
242 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
243 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
244 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
245 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
246 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
247 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
248 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
249 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
250 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
251 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
252
253 # This is for PTRACERS
254 for ii in $PTRACERS_NUM ; do
255 eval `echo "p0"$ii"_min=99"`
256 eval `echo "p0"$ii"_max=99"`
257 eval `echo "p0"$ii"_mean=99"`
258 eval `echo "p0"$ii"_sd=99"`
259 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
260 #echo 'tst = '$tst
261 if test "x$tst" = xt ; then
262 a="trcstat_ptracer0"
263 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
264 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
265 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
266 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
267 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
268 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
269 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
270 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
271 fi
272 done
273
274 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
275 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
276 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
277 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
278 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
279 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
280 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
281
282 eval "dashnum $allargs"
283
284 else
285 testoutput_ad $1 $2 "precision_grdchk_result"
286 fi
287 }
288
289 genmakemodel()
290 {
291 # genmakemodel directory
292 if test "x$NOGENMAKE" = xt ; then
293 echo "genmake skipped!"
294 else
295 if test "x$BASH" = x ; then
296 GENMAKE2="../../../tools/genmake2"
297 else
298 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
299 fi
300 (
301 cd $1;
302 command="$GENMAKE2 -ds -m $MAKE"
303 if test "x$ADM" = x ; then
304 command="$command --mods=../code"
305 else
306 command="$command --mods=../code_ad"
307 fi
308 if test "x$OPTFILE" != xNONE ; then
309 command="$command --optfile=$OPTFILE"
310 fi
311 if test "x$IEEE" != x ; then
312 command="$command -ieee"
313 fi
314 if test "x$MPI" = xt ; then
315 command="$command -mpi"
316 fi
317 printf 'genmake ... ' 1>&2
318 $command > make.log 2>&1
319 RETVAL=$?
320 # Reduce the size of the testing emails!
321 head -100 Makefile > $CDIR/Makefile_head
322 if test "x$RETVAL" != x0 ; then
323 tail make.log
324 echo "genmakemodel: genmake failed" 1>&2
325 cp genmake_* make.log $CDIR
326 return 1
327 else
328 echo "successful" 1>&2
329 fi
330 )
331 fi
332 }
333
334 makeclean()
335 {
336 # makeclean directory
337 if test "x$NOCLEAN" = xt ; then
338 echo "make CLEAN skipped!"
339 else
340 (
341 cd $1;
342 if test -e output.txt ; then
343 rm -f output.txt
344 fi
345 printf 'make CLEAN ... ' 2>&1
346 if test -r Makefile ; then
347 $MAKE CLEAN >> make.log 2>&1
348 RETVAL=$?
349 if test "x$RETVAL" != x0 ; then
350 tail make.log
351 echo "makeclean: \"make CLEAN\" failed" 1>&2
352 cp make.log $CDIR"/make.log"
353 return 1
354 fi
355 fi
356 echo successful 1>&2
357 exit 0
358 )
359 fi
360 }
361
362 postclean()
363 {
364 # postclean directory
365 if test "x$POSTCLEAN" = xt ; then
366 (
367 cd $1;
368 if test -r Makefile ; then
369 $MAKE CLEAN >> /dev/null 2>&1
370 fi
371 exit 0
372 )
373 fi
374 }
375
376 makedependmodel()
377 {
378 # makedependmodel directory
379 if test "x$NODEPEND" = xt ; then
380 echo "make depend skipped!"
381 else
382 (
383 cd $1;
384 printf 'make depend ... ' 1>&2
385 $MAKE depend >> make.log 2>&1
386 RETVAL=$?
387 if test "x$RETVAL" != x0 ; then
388 tail make.log
389 echo "makedependmodel: make depend failed" 1>&2
390 cp make.log $CDIR"/make.log"
391 return 1
392 else
393 echo successful 1>&2
394 fi
395 )
396 fi
397 }
398
399 makemodel()
400 {
401 # makemodel directory
402 (
403 cd $1;
404 if test -r Makefile ; then
405 printf 'make ... ' 1>&2
406 if test "x$ADM" = x ; then
407 if test "x$JOBS" = x ; then
408 $MAKE >> make.log 2>&1
409 else
410 $MAKE -j $JOBS >> make.log 2>&1
411 fi
412 else
413 $MAKE adall >> make.log 2>&1
414 fi
415 RETVAL=$?
416 if test "x$RETVAL" != x0 ; then
417 tail make.log
418 echo failed 1>&2
419 cp make.log $CDIR"/make.log"
420 return 1
421 else
422 echo successful 1>&2
423 fi
424 fi
425 )
426 }
427
428 symlink_mpifiles()
429 {
430 # Put special links so that MPI specific files are used
431 # This MUST be invoked between makeclean and makelinks because
432 # the Makefile will link to non-mpi files by default
433
434 dir=$1
435 code_dir=$2
436 BUILD_DIR=$dir/$3
437 CODE_DIR=$dir/$code_dir
438
439 # These are files that should replace their counter-part when using -mpi
440 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
441
442 # Is this an MPI run?
443 if test "x$MPI" = xt ; then
444 # YES: We symbolically link these files to the build
445 # dir so long as there is no real file in place
446 for ii in $MPI_FILES ; do
447 i=`echo $ii | sed 's:^\./::'`
448 name=`echo $i | sed 's:_mpi::' `
449 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
450 RETVAL=$?
451 if test "x$RETVAL" != x0 ; then
452 if ! test -f $BUILD_DIR/$i ; then
453 #echo Linking $name to $i
454 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
455 fi
456 fi
457 done
458 else
459 # NO: We undo any _mpi symbolically linked files
460 for ii in $MPI_FILES ; do
461 i=`echo $ii | sed 's:^\./::'`
462 name=`echo $i | sed 's:_mpi::' `
463 if test -L $BUILD_DIR/$name ; then
464 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
465 RETVAL=$?
466 if test "x$RETVAL" = x0 ; then
467 #echo Un-linking $name from $linktarg
468 rm -f $BUILD_DIR/$name
469 fi
470 fi
471 done
472 fi
473
474 }
475
476 linkdata()
477 {
478 # linkdata flag
479 #
480 # symbolically link data files to run directory
481 if test "x$1" = x1 ; then
482 (
483 cd $2
484 if test "x$ADM" = x ; then
485 files=`( cd ../input ; ls -1 | grep -v CVS )`
486 for i in $files ; do
487 if test ! -d "../input/"$i -a ! -f $i ; then
488 ln -sf "../input/"$i $i
489 fi
490 done
491 else
492 files=`( cd ../input_ad ; ls -1 | grep -v CVS )`
493 for i in $files ; do
494 if test ! -d "../input_ad/"$i ; then
495 ln -sf "../input_ad/"$i $i
496 fi
497 done
498 files=`( cd ../input ; ls -1 | grep -v CVS )`
499 for i in $files ; do
500 if test ! -d "../input/"$i ; then
501 if test ! -r $i ; then
502 ln -sf "../input/"$i $i
503 fi
504 fi
505 done
506 fi
507 )
508 fi
509 }
510
511 runmodel()
512 {
513 # runmodel directory
514 #
515 # runs "$COMMAND in "directory"
516 # (where "$COMMAND" is relative to "directory")
517 (
518 cd $1
519 printf 'runmodel in %s ...' $1 1>&2
520 # make output.txt
521 echo
522 rm -f run.log
523 if test $OUTPUTFILE -ot $EXECUTABLE ; then
524 ( eval $COMMAND ) > run.log 2>&1
525 RETVAL=$?
526 else
527 echo " $OUTPUTFILE is up to date " > run.log 2>&1
528 RETVAL=0
529 fi
530 # echo "COMMAND='$COMMAND'"
531 # echo "pwd='"`pwd`"'"
532 if test "x$RETVAL" = x0 ; then
533 tail run.log
534 echo successful 1>&2
535 # === Reduce the size of the testing emails!
536 # if test "x$ADM" = x ; then
537 # cp output.txt $CDIR"/output.txt"
538 # else
539 # cp output_adm.txt $CDIR"/output_adm.txt"
540 # fi
541 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
542 return 0
543 else
544 tail run.log
545 echo failed 1>&2
546 cp run.log $CDIR"/run.log"
547 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
548 return 1
549 fi
550 )
551 }
552
553 createcodelet()
554 {
555 # create codelet for comparing model output
556
557 printf "creating the comparison code... "
558 cat > tmp_cmpnum.c <<EOF
559 #include <stdio.h>
560 #include <math.h>
561 int main( int argc, char** argv ) {
562 int linnum,best,lncnt;
563 double a,b,abave,relerr;
564 best = -22;
565 lncnt = 0;
566 while( 1 & (lncnt+=1) < 999 ) {
567 scanf("%d", &linnum);
568 if (linnum == -1) break;
569 scanf("%lf", &a); scanf("%lf", &b);
570 abave = 0.5*(fabs(a)+fabs(b));
571 if (abave > 0.0) {
572 relerr=fabs(a-b)/abave;
573 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
574 else { linnum = -16 ; }
575 best = (best > linnum) ? best : linnum;
576 }
577 }
578 if (lncnt == 999) best=-29;
579 printf("%d\n", -best);
580 return 0;
581 }
582 EOF
583 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
584
585 if [ -x ./tmp_cmpnum ]; then
586 echo "OK"
587 return 0
588 else
589 echo
590 echo "ERROR: failed to compile comparison code -- please specify"
591 echo " a C compiler using the CC environment variable."
592 exit 1
593 fi
594 }
595
596 formatresults()
597 {
598 # formatresults expt genmake depend make run results*
599
600 nm=$1
601 printf '%s %s %s %s' $2 $3 $4 $5
602 shift; shift; shift; shift; shift;
603 printf '%3s' $@
604
605 if [ $1 = '--' ]; then
606 printf ' N/O '
607 else
608 if [ $1 -gt 12 ]; then
609 printf ' pass'
610 else
611 printf ' FAIL'
612 fi
613 fi
614 printf ' %s' $nm
615 printf '\n'
616
617 }
618
619 show_help()
620 {
621 cat - << EOF
622 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
623
624 -help|-h Show this help message
625 -quiet Reduce the amount of output
626 -verbose Produce copious amounts of output
627 -debug Produce even more output which will mean nothing to most
628 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
629 -clean Do "make CLEAN" after compiling and testing.
630 -cleanup Aggresively removes all model output, executables and object files
631 and then exits. Use with care.
632
633 Normal usage:
634 $0 * Configure, compile, run and analyze in all experiment directories
635 EOF
636 }
637
638 scandirs()
639 {
640 if [ $# -eq 0 ]; then
641 for arg in * ; do
642 test -d $arg/input && echo $arg
643 done
644 else
645 echo $*
646 fi
647 }
648
649
650 ###############################################################################
651
652
653 # Default properties
654 debug=0
655 verbose=1
656 clean=0
657 expts=''
658 # ieee=1
659
660 IEEE=true
661 if test "x$MITGCM_IEEE" != x ; then
662 IEEE=$MITGCM_IEEE
663 fi
664
665
666 CLEANUP=f
667 QUICK=f
668 NOGENMAKE=f
669 NOCLEAN=f
670 NODEPEND=f
671 POSTCLEAN=f
672
673 BASH=
674 OPTFILE=NONE
675 ADDRESSES=
676 TESTDIRS=
677 MPACKDIR="../tools/mpack-1.6"
678 HAVE_MPACK=
679 MPACK="$MPACKDIR/mpack"
680 COMMAND=
681 if test "x$MAKE" = x ; then
682 MAKE=make
683 fi
684 if test "x$CC" = x ; then
685 CC=cc
686 fi
687 JOBS=
688 MPI=f
689 OUTDIR=
690 DELDIR=
691
692 ADM=
693
694 # Additional monitor types
695 PTRACERS_NUM="1 2 3 4 5"
696
697 printf "parsing options... "
698
699 ac_prev=
700 for ac_option ; do
701
702 # If the previous option needs an argument, assign it.
703 if test -n "$ac_prev"; then
704 eval "$ac_prev=\$ac_option"
705 ac_prev=
706 continue
707 fi
708
709 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
710
711 case $ac_option in
712
713 -help | --help | -h | --h)
714 usage ;;
715
716 -optfile | --optfile | -of | --of)
717 ac_prev=OPTFILE ;;
718 -optfile=* | --optfile=* | -of=* | --of=*)
719 OPTFILE=$ac_optarg ;;
720
721 -addr | --addr | -a | --a)
722 ac_prev=ADDRESSES ;;
723 -addr=* | --addr=*)
724 ADDRESSES=$ac_optarg ;;
725
726 -tdir | --tdir | -t | --t)
727 ac_prev=TESTDIRS ;;
728 -tdir=* | --tdir=*)
729 TESTDIRS=$ac_optarg ;;
730
731 -bash | --bash | -b | --b)
732 ac_prev=BASH ;;
733 -bash=* | --bash=*)
734 BASH=$ac_optarg ;;
735
736 -command | --command | -c | --c)
737 ac_prev=COMMAND ;;
738 -command=* | --command=*)
739 COMMAND=$ac_optarg ;;
740
741 -make | --make | -m | --m)
742 ac_prev=MAKE ;;
743 -make=* | --make=*)
744 MAKE=$ac_optarg ;;
745
746 -odir | --odir)
747 ac_prev=OUTDIR ;;
748 -odir=* | --odir=*)
749 OUTDIR=$ac_optarg ;;
750
751 -ptracers | --ptracers | -ptr | --ptr)
752 ac_prev=PTRACERS_NUM ;;
753 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
754 PTRACERS_NUM=$ac_optarg ;;
755
756 -j) ac_prev=JOBS ;;
757 -j=*) JOBS=$ac_optarg ;;
758
759 -clean | --clean)
760 CLEANUP=t ; DELDIR=t ;;
761
762 -quick | --quick | -q | --q)
763 QUICK=t ;;
764 -nogenmake | --nogenmake | -ng | --ng)
765 NOGENMAKE=t ;;
766 -noclean | --noclean | -nc | --nc)
767 NOCLEAN=t ;;
768 -nodepend | --nodepend | -nd | --nd)
769 NODEPEND=t ;;
770
771 -postclean | --postclean | -pc | --pc)
772 POSTCLEAN=t ;;
773
774 -mpi) MPI=t ;;
775
776 -adm | -ad) ADM=t ;;
777
778 -ieee) IEEE=true ;;
779 -noieee) IEEE= ;;
780
781 -verbose) verbose=2 ;;
782 -debug) debug=1 ;;
783 -quiet) verbose=0 ;;
784
785 -deldir | -dd) DELDIR=t ;;
786
787 -*)
788 echo "Error: unrecognized option: "$ac_option
789 usage
790 ;;
791
792 *)
793 echo "Error: unrecognized argument: "$ac_option
794 usage
795 ;;
796
797 esac
798
799 done
800
801 if test "x$QUICK" = xt ; then
802 NOGENMAKE=t
803 NOCLEAN=t
804 NODEPEND=t
805 fi
806
807 if test "x$TESTDIRS" = x ; then
808 TESTDIRS=`scandirs`
809 fi
810
811 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
812 OPTFILE=$MITGCM_OF
813 fi
814
815 if test "x$ADM" = xt ; then
816 EXECUTABLE="mitgcmuv_ad"
817 OUTPUTFILE="output_adm.txt"
818 else
819 EXECUTABLE="mitgcmuv"
820 OUTPUTFILE="output.txt"
821 fi
822
823 if test "x$ADM" = xt -a "x$COMMAND" = x ; then
824 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
825 fi
826
827 if test "x$COMMAND" = x ; then
828 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
829 fi
830
831 #echo "OK"
832 echo "OK (COMMAND= $COMMAND )"
833
834 # create the FORTRAN comparison code
835 createcodelet
836
837 # build the mpack utility
838 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
839 echo "skipping mpack build"
840 else
841 build_mpack
842 fi
843
844 # Create a uniquely named directory to store results
845 MACH=`hostname`
846 UNAMEA=`uname -a`
847 DATE=`date +%Y%m%d`
848 BASE="tr_"$MACH"_"$DATE"_"
849 if test "x$OUTDIR" != x ; then
850 BASE="tr_"$OUTDIR"_"$DATE"_"
851 fi
852 DNUM=0
853 DRESULTS="$BASE$DNUM"
854 while test -e $DRESULTS ; do
855 DNUM=$(( $DNUM + 1 ))
856 DRESULTS="$BASE$DNUM"
857 done
858 mkdir $DRESULTS
859 RETVAL=$?
860 if test "x$RETVAL" != x0 ; then
861 echo "ERROR: Can't create results directory \"./$DRESULTS\""
862 exit 1
863 fi
864 SUMMARY="$DRESULTS/summary.txt"
865 printf "Start time: " >> $SUMMARY
866 start_date=`date`
867 echo $start_date > $SUMMARY
868
869 of_path=
870 if test "x$OPTFILE" != xNONE ; then
871 if test -r $OPTFILE ; then
872 # get the path
873 path=${OPTFILE%/*}
874 if test "x$path" = x ; then
875 of_path=`pwd`
876 else
877 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
878 fi
879 file=${OPTFILE##*/}
880 OPTFILE=$of_path/$file
881 cp $OPTFILE $DRESULTS
882 echo >> $SUMMARY
883 echo " OPTFILE=$OPTFILE" >> $SUMMARY
884 else
885 echo | tee $SUMMARY
886 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
887 exit 1
888 fi
889 else
890 echo >> $SUMMARY
891 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
892 echo " so the genmake default will be used." >> $SUMMARY
893 fi
894 echo
895 echo >> $SUMMARY
896 if test "x$ADM" = x ; then
897 line_0=" ----T----- ----S----- ----U----- ----V-----"
898 line_1="G D M c m s m s m s m s"
899 line_2="E p a R g m m e . m m e . m m e . m m e ."
900 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
901 line_4="2 d e n d n x n . n x n . n x n . n x n ."
902 for ii in $PTRACERS_NUM ; do
903 # tst=`eval 'echo $HAVE_PTR0'$ii`
904 # if test "x$tst" = xt ; then
905 line_0="$line_0 --PTR 0"$ii"--"
906 line_1="$line_1 m s"
907 line_2="$line_2 m m e ."
908 line_3="$line_3 i a a d"
909 line_4="$line_4 n x n ."
910 # fi
911 done
912 echo "$line_0" | tee -a $SUMMARY
913 echo "$line_1" | tee -a $SUMMARY
914 echo "$line_2" | tee -a $SUMMARY
915 echo "$line_3" | tee -a $SUMMARY
916 echo "$line_4" | tee -a $SUMMARY
917 echo " " | tee -a $SUMMARY
918 else
919 echo "ADJOINT=true" >> $SUMMARY
920 echo >> $SUMMARY
921 cat << EOF | tee -a $SUMMARY
922 G D M C G
923 E p a R o r
924 N n k u s a
925 2 d e n t d
926
927 EOF
928 fi
929
930 # ...and each test directory...
931 for dir in $TESTDIRS ; do
932
933 # Cleanup only!
934 if test "x$CLEANUP" = xt ; then
935 if test -r $dir/build/Makefile ; then
936 ( cd $dir/build ; make CLEAN )
937 fi
938 if test -r $dir/input/Makefile ; then
939 ( cd $dir/input ; make CLEAN )
940 fi
941 (
942 cd $dir
943 rm -rf tr_run.*
944 )
945 continue
946 fi
947
948 # Verify that the testdir exists and contains previous
949 # results in the correct location--or skip this directory!
950 fout=
951 if test "x$ADM" = x ; then
952 fout=$dir"/results/output.txt"
953 else
954 fout=$dir"/results_ad/output_adm.txt"
955 fi
956 if test ! -r $fout ; then
957 echo "can't read \"$fout\" -- skipping $dir"
958 continue
959 fi
960 if test "x$ADM" = x ; then
961 check_for_add_mon_output $fout
962 fi
963
964 # Check for additional types of monitor output
965
966 builddir="input"
967 rundir="input"
968 use_seperate_build=0
969 if test -d $dir/build -a -r $dir/build ; then
970 builddir="build"
971 rundir="build"
972 use_seperate_build=1
973 linkdata $use_seperate_build $dir/$rundir
974 fi
975
976 # Check whether there are "extra runs" for this testdir
977 extra_runs=
978 if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then
979 ex_run_dirs=`( cd $dir ; echo input.* )`
980 echo "ex_run_dirs='$ex_run_dirs'"
981 for exd in $ex_run_dirs ; do
982 name=`echo $exd | sed -e 's/input.//g'`
983 outf="$dir/results/output.txt.$name"
984 if test -f $outf -a -r $outf ; then
985 extra_runs="$extra_runs $name"
986 fi
987 done
988 fi
989
990 if test "x$ADM" = x ; then
991 code_dir=code
992 CODE_DIR=$dir/code
993 else
994 code_dir=code_ad
995 CODE_DIR=$dir/code_ad
996 fi
997 BUILD_DIR=$dir/$builddir
998
999 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1000 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1001 continue
1002 fi
1003
1004 echo "-------------------------------------------------------------------------------"
1005 echo
1006 echo "Experiment: $dir"
1007 echo
1008 unset genmake makedepend make run
1009 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1010
1011 # Create an output dir for each OPTFILE/tdir combination
1012 rel_CDIR=$DRESULTS"/"$dir
1013 mkdir $rel_CDIR
1014 CDIR=`pwd`"/$rel_CDIR"
1015
1016 if test "x$CLEANUP" = xt ; then
1017 makeclean $dir/$builddir
1018 else
1019 genmakemodel $dir/$builddir && genmake=Y \
1020 && makeclean $dir/$builddir \
1021 && symlink_mpifiles $dir $code_dir $builddir \
1022 && makedependmodel $dir/$builddir && makedepend=Y \
1023 && makemodel $dir/$builddir && make=Y \
1024 && linkdata $use_seperate_build $dir/$rundir \
1025 && runmodel $dir/$rundir && run=Y \
1026 && results=`testoutput $dir $rundir`
1027 fi
1028
1029 echo
1030 if test "x$ADM" = x ; then
1031 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1032 echo
1033 echo "$fres" >> $SUMMARY
1034 echo "fresults='$fres'" > $CDIR"/summary.txt"
1035 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1036 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1037 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1038 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1039
1040 for ex in $extra_runs ; do
1041 unset run
1042 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1043 # Create an output dir for each OPTFILE/tdir.ex combination
1044 rel_CDIR=$DRESULTS"/"$dir"."$ex
1045 mkdir $rel_CDIR
1046 CDIR=`pwd`"/$rel_CDIR"
1047 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1048 for ldir in input.$ex input ; do
1049 (
1050 cd "$dir/$ldir" > /dev/null 2>&1
1051 ls -1 2>/dev/null \
1052 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1053 ) > tr_exrun_links
1054 (
1055 cd "$dir/tr_run.$ex"
1056 cat ../../tr_exrun_links | while read i ; do
1057 if test ! "x$i" = x ; then
1058 test ! -r $i && ln -s "../"$ldir"/"$i $i
1059 fi
1060 done
1061 )
1062 test -e tr_exrun_links && rm -f tr_exrun_links
1063 done
1064 ldir=build
1065 (
1066 cd $dir/tr_run.$ex
1067 test ! -e mitgcmuv && ln -s "../"$ldir"/"mitgcmuv .
1068 )
1069 runmodel $dir/tr_run.$ex && run=Y \
1070 && results=`testoutput $dir tr_run.$ex "."$ex`
1071 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1072 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1073 fres="$fres.$ex"
1074 echo
1075 echo "$fres" >> $SUMMARY
1076 echo "fresults='$fres'" > $CDIR"/summary.txt"
1077 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1078 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1079 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1080 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1081 done
1082 else
1083 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1084 fres=$fres"$results $dir"
1085 echo
1086 echo "$fres" >> $SUMMARY
1087 echo "fresults='$fres'" > $CDIR"/summary.txt"
1088 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1089 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1090 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1091 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1092 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1093 >> $CDIR"/summary.txt"
1094 fi
1095
1096 postclean $dir/$builddir
1097
1098 echo "-------------------------------------------------------------------------------"
1099
1100 done
1101
1102 printf "Start time: " >> $SUMMARY
1103 echo $start_date >> $SUMMARY
1104 printf "End time: " >> $SUMMARY
1105 date >> $SUMMARY
1106
1107 # If addresses were supplied and mpack built successfully, then try
1108 # to send email using mpack.
1109 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1110 echo "No results email was sent."
1111 else
1112 if test "x$HAVE_MPACK" = xt ; then
1113 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1114 && gzip $DRESULTS".tar" \
1115 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1116 RETVAL=$?
1117 if test "x$RETVAL" != x0 ; then
1118 echo
1119 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1120 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1121 echo " summary of results from the directory \"$DRESULTS\"."
1122 echo
1123 else
1124 echo
1125 echo "An email containing results was sent to the following addresses:"
1126 echo " \"$ADDRESSES\""
1127 echo
1128 fi
1129 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1130 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1131 fi
1132 fi
1133
1134 # rm -f tmp_cmpnum.f a.out
1135 rm -f tmp_cmpnum.c tmp_cmpnum
1136
1137 if test "x$CLEANUP" != xt ; then
1138 cat $SUMMARY | sed 's/ -- -- -- --//g'
1139 if test -e tr_out.txt ; then
1140 mv tr_out.txt tr_out.txt.old
1141 fi
1142 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1143 fi
1144
1145 if test "x$DELDIR" = xt ; then
1146 rm -rf $DRESULTS
1147 fi

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