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Revision 1.74 - (show annotations) (download)
Fri Jan 13 16:33:33 2006 UTC (18 years, 2 months ago) by edhill
Branch: MAIN
CVS Tags: checkpoint58a_post
Changes since 1.73: +7 -4 lines
fix "argument too long" problem reported by Martin & Jean-Michel:
  http://mitgcm.org/pipermail/mitgcm-devel/2006-January/001848.html

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.73 2005/12/03 23:23:41 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mpi) use MPI input files"
15 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
16 echo " (DEF=\"-ieee\")"
17 echo " (-optfile=|-of=)STRING list of optfiles to use"
18 echo " (-a|-addr) STRING list of email recipients"
19 echo " (DEF=\"edhill@mitgcm.org\")"
20 echo " (-t|-tdir) STRING list of test dirs to use"
21 echo " (DEF=\"\" which builds all)"
22 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
23 echo " Bourne-compatible \"sh\" shell"
24 echo " (DEF=\"\" for \"bash\")"
25 echo " (-adm|-ad) perform an adjoint run"
26 echo " (-command) STRING command to run"
27 echo " (DEF=\"make output.txt\")"
28 echo " (-m|-make) STRING command to use for \"make\""
29 echo " (DEF=\"make\")"
30 echo " (-odir) STRING used to build output directory name"
31 echo " (DEF=\"hostname\")"
32 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
33 echo " (DEF=\"1 2 3 4 5\")"
34 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
35 echo " (-clean) *ONLY* run \"make CLEAN\""
36 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
37 echo " (-nogenmake|-ng) skip the genmake stage"
38 echo " (-noclean|-nc) skip the \"make clean\" stage"
39 echo " (-nodepend|-nd) skip the \"make depend\" stage"
40 echo " (-deldir|-dd) on success, delete the output directory"
41 echo
42 echo "and where STRING can be a whitespace-delimited list"
43 echo "such as:"
44 echo
45 echo " -t 'exp0 exp2 exp3' "
46 echo " -addr='abc@123.com testing@home.org'"
47 echo
48 echo "provided that the expression is properly quoted within the current"
49 echo "shell (note the use of single quotes to protect white space)."
50 echo
51 exit 1
52 }
53
54 # build the mpack utility
55 build_mpack()
56 {
57 printf "building the mpack utility... "
58 if test ! -x "$MPACKDIR/mpack" ; then
59 if test ! -d $MPACKDIR ; then
60 echo
61 echo "Error: can't find \"$MPACKDIR\""
62 echo " are you sure this program is being run in the correct "
63 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
64 echo
65 HAVE_MPACK=f
66 fi
67 printf "building mpack... "
68 if test "x$CC" = x ; then
69 export CC=cc
70 fi
71 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
72 RETVAL=$?
73 if test "x$RETVAL" != x0 ; then
74 echo
75 echo "Error building the mpack tools at: $MPACK_DIR"
76 echo
77 HAVE_MPACK=f
78 else
79 rm -f tr_build_mpack.out
80 HAVE_MPACK=t
81 fi
82 else
83 HAVE_MPACK=t
84 fi
85 echo "OK"
86 }
87
88 testoutput_for_prop()
89 {
90 # testoutput_for_prop dir s1 label subdir extension
91 #
92 # compares files in $dir/$subdir/output.txt and $dir/results/output.txt
93 # using search strings s1 and text label
94
95 if [ $debug -gt 0 ]; then
96 echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
97 fi
98 if [ -r $1/$4/output.txt ]; then
99 grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
100 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
101 if [ $lncntA -lt 3 ]; then
102 if [ $verbose -gt 0 ]; then
103 echo Not enough lines of output when searching for "$2" 1>&2
104 fi
105 return 99
106 fi
107 else
108 echo testoutput_for_prop: output.txt from model run was not readable 1>&2
109 return 99
110 fi
111 if [ $debug -gt 0 ]; then
112 echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2
113 fi
114 grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt
115 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
116 if [ $lncntB -lt 3 ]; then
117 if [ $verbose -gt 0 ]; then
118 echo Not enough lines of output when searching for "$2" 1>&2
119 fi
120 return 99
121 fi
122 if [ $lncntA -ne $lncntB ]; then
123 if [ $verbose -gt 0 ]; then
124 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
125 fi
126 return 99
127 fi
128 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
129 if [ $has_nan -gt 0 ] ; then
130 echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2
131 return 99
132 fi
133 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
134 if [ $has_inf -gt 0 ] ; then
135 echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2
136 return 99
137 fi
138 if [ $debug -gt 0 ]; then
139 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
140 fi
141 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
142 if [ $debug -gt 0 ]; then
143 echo testoutput_for_prop: compare_lines 1>&2
144 fi
145 if [ $verbose -gt 1 ]; then
146 cat tmp3.txt 1>&2
147 fi
148 echo "-1" >> tmp3.txt
149 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
150 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
151 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
152 if [ $digits_of_similarity -eq 99 ]; then
153 if [ $verbose -gt 0 ]; then
154 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
155 fi
156 digits_of_similarity=99
157 else
158 if [ $verbose -gt 0 ]; then
159 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
160 fi
161 fi
162 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
163
164 return $digits_of_similarity
165 }
166
167 dashnum()
168 {
169 # dashnum n1 n2 n3 ...
170 #
171 # print numbers using %3i format or "--" if number = 99
172
173 for num in $@ ; do
174 if [ $num = 99 ]; then
175 printf ' --'
176 else
177 printf '%3i' $num
178 fi
179 done
180 }
181
182 testoutput_ad()
183 {
184 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt
185 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt
186 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt
187 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt
188 join t05.txt t15.txt > t5.txt
189 join t06.txt t16.txt > t6.txt
190 echo "-1" >> t5.txt
191 echo "-1" >> t6.txt
192 digits_5=`./tmp_cmpnum < t5.txt`
193 digits_6=`./tmp_cmpnum < t6.txt`
194 dashnum $digits_5 $digits_6
195 rm -f t[01][56].txt t[56].txt
196 }
197
198 check_for_add_mon_output()
199 {
200 # Check for additional types of monitor output
201 if test "x$1" = x ; then
202 return
203 fi
204
205 for ii in $PTRACERS_NUM ; do
206 eval "HAVE_PTR0"$ii"=f"
207 done
208
209 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
210 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
211 for ii in $PTRACERS_NUM ; do
212 for jj in $ptr_add ; do
213 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
214 tst=`grep $name $1 | wc -l | awk '{print $1}'`
215 if test ! "x$tst" = x0 ; then
216 eval "HAVE_PTR0"$ii"=t"
217 fi
218 done
219 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
220 done
221 }
222
223 testoutput()
224 {
225 # testoutput directory subdir extension
226 #
227 # test output in "directory"
228 if test "x$ADM" = x ; then
229 if [ $debug -gt 0 ]; then
230 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
231 fi
232 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
233 if [ $debug -gt 0 ]; then
234 echo testoutput: cg2dres=$cg2dres 1>&2
235 fi
236 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
237 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
238 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
239 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
240 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
241 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
242 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
243 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
244 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
245 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
246 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
247 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
248 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
249 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
250 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
251 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
252
253 # This is for PTRACERS
254 for ii in $PTRACERS_NUM ; do
255 eval `echo "p0"$ii"_min=99"`
256 eval `echo "p0"$ii"_max=99"`
257 eval `echo "p0"$ii"_mean=99"`
258 eval `echo "p0"$ii"_sd=99"`
259 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
260 #echo 'tst = '$tst
261 if test "x$tst" = xt ; then
262 a="trcstat_ptracer0"
263 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
264 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
265 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
266 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
267 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
268 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
269 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
270 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
271 fi
272 done
273
274 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
275 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
276 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
277 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
278 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
279 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
280 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
281
282 eval "dashnum $allargs"
283
284 else
285 testoutput_ad $1 $2 "precision_grdchk_result"
286 fi
287 }
288
289 genmakemodel()
290 {
291 # genmakemodel directory
292 if test "x$NOGENMAKE" = xt ; then
293 echo "genmake skipped!"
294 else
295 if test "x$BASH" = x ; then
296 GENMAKE2="../../../tools/genmake2"
297 else
298 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
299 fi
300 (
301 cd $1;
302 command="$GENMAKE2 -ds -m $MAKE"
303 if test "x$ADM" = x ; then
304 command="$command --mods=../code"
305 else
306 command="$command --mods=../code_ad"
307 command="$command -adof=../../../tools/adjoint_options/adjoint_staf"
308 fi
309 if test "x$OPTFILE" != xNONE ; then
310 command="$command --optfile=$OPTFILE"
311 fi
312 if test "x$IEEE" != x ; then
313 command="$command -ieee"
314 fi
315 if test "x$MPI" = xt ; then
316 command="$command -mpi"
317 fi
318 printf 'genmake ... ' 1>&2
319 $command > make.log 2>&1
320 RETVAL=$?
321 # Reduce the size of the testing emails!
322 head -100 Makefile > $CDIR/Makefile_head
323 if test "x$RETVAL" != x0 ; then
324 tail make.log
325 echo "genmakemodel: genmake failed" 1>&2
326 cp genmake_* make.log $CDIR
327 return 1
328 else
329 echo "successful" 1>&2
330 fi
331 )
332 fi
333 }
334
335 makeclean()
336 {
337 # makeclean directory
338 if test "x$NOCLEAN" = xt ; then
339 echo "make CLEAN skipped!"
340 else
341 (
342 cd $1;
343 if test -e output.txt ; then
344 rm -f output.txt
345 fi
346 printf 'make CLEAN ... ' 2>&1
347 if test -r Makefile ; then
348 $MAKE CLEAN >> make.log 2>&1
349 RETVAL=$?
350 if test "x$RETVAL" != x0 ; then
351 tail make.log
352 echo "makeclean: \"make CLEAN\" failed" 1>&2
353 cp make.log $CDIR"/make.log"
354 return 1
355 fi
356 fi
357 echo successful 1>&2
358 exit 0
359 )
360 fi
361 }
362
363 postclean()
364 {
365 # postclean directory
366 if test "x$POSTCLEAN" = xt ; then
367 (
368 cd $1;
369 if test -r Makefile ; then
370 $MAKE CLEAN >> /dev/null 2>&1
371 fi
372 exit 0
373 )
374 fi
375 }
376
377 makedependmodel()
378 {
379 # makedependmodel directory
380 if test "x$NODEPEND" = xt ; then
381 echo "make depend skipped!"
382 else
383 (
384 cd $1;
385 printf 'make depend ... ' 1>&2
386 $MAKE depend >> make.log 2>&1
387 RETVAL=$?
388 if test "x$RETVAL" != x0 ; then
389 tail make.log
390 echo "makedependmodel: make depend failed" 1>&2
391 cp make.log $CDIR"/make.log"
392 return 1
393 else
394 echo successful 1>&2
395 fi
396 )
397 fi
398 }
399
400 makemodel()
401 {
402 # makemodel directory
403 (
404 cd $1;
405 if test -r Makefile ; then
406 printf 'make ... ' 1>&2
407 if test "x$ADM" = x ; then
408 if test "x$JOBS" = x ; then
409 $MAKE >> make.log 2>&1
410 else
411 $MAKE -j $JOBS >> make.log 2>&1
412 fi
413 else
414 $MAKE adall >> make.log 2>&1
415 fi
416 RETVAL=$?
417 if test "x$RETVAL" != x0 ; then
418 tail make.log
419 echo failed 1>&2
420 cp make.log $CDIR"/make.log"
421 return 1
422 else
423 echo successful 1>&2
424 fi
425 fi
426 )
427 }
428
429 symlink_mpifiles()
430 {
431 # Put special links so that MPI specific files are used
432 # This MUST be invoked between makeclean and makelinks because
433 # the Makefile will link to non-mpi files by default
434
435 dir=$1
436 code_dir=$2
437 BUILD_DIR=$dir/$3
438 CODE_DIR=$dir/$code_dir
439
440 # These are files that should replace their counter-part when using -mpi
441 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
442
443 # Is this an MPI run?
444 if test "x$MPI" = xt ; then
445 # YES: We symbolically link these files to the build
446 # dir so long as there is no real file in place
447 for ii in $MPI_FILES ; do
448 i=`echo $ii | sed 's:^\./::'`
449 name=`echo $i | sed 's:_mpi::' `
450 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
451 RETVAL=$?
452 if test "x$RETVAL" != x0 ; then
453 if ! test -f $BUILD_DIR/$i ; then
454 #echo Linking $name to $i
455 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
456 fi
457 fi
458 done
459 else
460 # NO: We undo any _mpi symbolically linked files
461 for ii in $MPI_FILES ; do
462 i=`echo $ii | sed 's:^\./::'`
463 name=`echo $i | sed 's:_mpi::' `
464 if test -L $BUILD_DIR/$name ; then
465 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
466 RETVAL=$?
467 if test "x$RETVAL" = x0 ; then
468 #echo Un-linking $name from $linktarg
469 rm -f $BUILD_DIR/$name
470 fi
471 fi
472 done
473 fi
474
475 }
476
477 linkdata()
478 {
479 # linkdata flag
480 #
481 # symbolically link data files to run directory
482 if test "x$1" = x1 ; then
483 (
484 cd $2
485 if test "x$ADM" = x ; then
486 files=`( cd ../input ; ls -1 | grep -v CVS )`
487 for i in $files ; do
488 if test ! -d "../input/"$i -a ! -f $i ; then
489 ln -sf "../input/"$i $i
490 fi
491 done
492 else
493 files=`( cd ../input ; ls -1 *.bin | grep -v CVS )`
494 for i in $files ; do
495 if test ! -d "../input/"$i ; then
496 ln -sf "../input/"$i $i
497 fi
498 done
499 files=`( cd ../input_ad ; ls -1 | grep -v CVS )`
500 for i in $files ; do
501 if test ! -d "../input_ad/"$i ; then
502 ln -sf "../input_ad/"$i $i
503 fi
504 done
505 fi
506 )
507 fi
508 }
509
510 runmodel()
511 {
512 # runmodel directory
513 #
514 # runs "$COMMAND in "directory"
515 # (where "$COMMAND" is relative to "directory")
516 (
517 cd $1
518 printf 'runmodel ... ' 1>&2
519 # make output.txt
520 echo
521 rm -f run.log
522 # echo "COMMAND='$COMMAND'"
523 # echo "pwd='"`pwd`"'"
524 ( eval $COMMAND ) > run.log 2>&1
525 RETVAL=$?
526 if test "x$RETVAL" = x0 ; then
527 tail run.log
528 echo successful 1>&2
529 # === Reduce the size of the testing emails!
530 # if test "x$ADM" = x ; then
531 # cp output.txt $CDIR"/output.txt"
532 # else
533 # cp output.txt_adm $CDIR"/output.txt_adm"
534 # fi
535 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
536 return 0
537 else
538 tail run.log
539 echo failed 1>&2
540 cp run.log $CDIR"/run.log"
541 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
542 return 1
543 fi
544 )
545 }
546
547 createcodelet()
548 {
549 # create codelet for comparing model output
550
551 printf "creating the comparison code... "
552 cat > tmp_cmpnum.c <<EOF
553 #include <stdio.h>
554 #include <math.h>
555 int main( int argc, char** argv ) {
556 int linnum,best,lncnt;
557 double a,b,abave,relerr;
558 best = -22;
559 lncnt = 0;
560 while( 1 & (lncnt+=1) < 999 ) {
561 scanf("%d", &linnum);
562 if (linnum == -1) break;
563 scanf("%lf", &a); scanf("%lf", &b);
564 abave = 0.5*(fabs(a)+fabs(b));
565 if (abave > 0.0) {
566 relerr=fabs(a-b)/abave;
567 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
568 else { linnum = -16 ; }
569 best = (best > linnum) ? best : linnum;
570 }
571 }
572 if (lncnt == 999) best=-29;
573 printf("%d\n", -best);
574 return 0;
575 }
576 EOF
577 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
578
579 if [ -x ./tmp_cmpnum ]; then
580 echo "OK"
581 return 0
582 else
583 echo
584 echo "ERROR: failed to compile comparison code -- please specify"
585 echo " a C compiler using the CC environment variable."
586 exit 1
587 fi
588 }
589
590 formatresults()
591 {
592 # formatresults expt genmake depend make run results*
593
594 nm=$1
595 printf '%s %s %s %s' $2 $3 $4 $5
596 shift; shift; shift; shift; shift;
597 printf '%3s' $@
598
599 if [ $1 = '--' ]; then
600 printf ' N/O '
601 else
602 if [ $1 -gt 12 ]; then
603 printf ' pass'
604 else
605 printf ' FAIL'
606 fi
607 fi
608 printf ' %s' $nm
609 printf '\n'
610
611 }
612
613 show_help()
614 {
615 cat - << EOF
616 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
617
618 -help|-h Show this help message
619 -quiet Reduce the amount of output
620 -verbose Produce copious amounts of output
621 -debug Produce even more output which will mean nothing to most
622 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
623 -clean Do "make CLEAN" after compiling and testing.
624 -cleanup Aggresively removes all model output, executables and object files
625 and then exits. Use with care.
626
627 Normal usage:
628 $0 * Configure, compile, run and analyze in all experiment directories
629 EOF
630 }
631
632 scandirs()
633 {
634 if [ $# -eq 0 ]; then
635 for arg in * ; do
636 test -d $arg/input && echo $arg
637 done
638 else
639 echo $*
640 fi
641 }
642
643
644 ###############################################################################
645
646
647 # Default properties
648 debug=0
649 verbose=1
650 clean=0
651 expts=''
652 # ieee=1
653
654 IEEE=true
655 if test "x$MITGCM_IEEE" != x ; then
656 IEEE=$MITGCM_IEEE
657 fi
658
659
660 CLEANUP=f
661 QUICK=f
662 NOGENMAKE=f
663 NOCLEAN=f
664 NODEPEND=f
665 POSTCLEAN=f
666
667 BASH=
668 OPTFILE=NONE
669 ADDRESSES=
670 TESTDIRS=
671 MPACKDIR="../tools/mpack-1.6"
672 HAVE_MPACK=
673 MPACK="$MPACKDIR/mpack"
674 COMMAND=
675 if test "x$MAKE" = x ; then
676 MAKE=make
677 fi
678 if test "x$CC" = x ; then
679 CC=cc
680 fi
681 JOBS=
682 MPI=f
683 OUTDIR=
684 DELDIR=
685
686 ADM=
687
688 # Additional monitor types
689 PTRACERS_NUM="1 2 3 4 5"
690
691 printf "parsing options... "
692
693 ac_prev=
694 for ac_option ; do
695
696 # If the previous option needs an argument, assign it.
697 if test -n "$ac_prev"; then
698 eval "$ac_prev=\$ac_option"
699 ac_prev=
700 continue
701 fi
702
703 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
704
705 case $ac_option in
706
707 -help | --help | -h | --h)
708 usage ;;
709
710 -optfile | --optfile | -of | --of)
711 ac_prev=OPTFILE ;;
712 -optfile=* | --optfile=* | -of=* | --of=*)
713 OPTFILE=$ac_optarg ;;
714
715 -addr | --addr | -a | --a)
716 ac_prev=ADDRESSES ;;
717 -addr=* | --addr=*)
718 ADDRESSES=$ac_optarg ;;
719
720 -tdir | --tdir | -t | --t)
721 ac_prev=TESTDIRS ;;
722 -tdir=* | --tdir=*)
723 TESTDIRS=$ac_optarg ;;
724
725 -bash | --bash | -b | --b)
726 ac_prev=BASH ;;
727 -bash=* | --bash=*)
728 BASH=$ac_optarg ;;
729
730 -command | --command | -c | --c)
731 ac_prev=COMMAND ;;
732 -command=* | --command=*)
733 COMMAND=$ac_optarg ;;
734
735 -make | --make | -m | --m)
736 ac_prev=MAKE ;;
737 -make=* | --make=*)
738 MAKE=$ac_optarg ;;
739
740 -odir | --odir)
741 ac_prev=OUTDIR ;;
742 -odir=* | --odir=*)
743 OUTDIR=$ac_optarg ;;
744
745 -ptracers | --ptracers | -ptr | --ptr)
746 ac_prev=PTRACERS_NUM ;;
747 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
748 PTRACERS_NUM=$ac_optarg ;;
749
750 -j) ac_prev=JOBS ;;
751 -j=*) JOBS=$ac_optarg ;;
752
753 -clean | --clean)
754 CLEANUP=t ; DELDIR=t ;;
755
756 -quick | --quick | -q | --q)
757 QUICK=t ;;
758 -nogenmake | --nogenmake | -ng | --ng)
759 NOGENMAKE=t ;;
760 -noclean | --noclean | -nc | --nc)
761 NOCLEAN=t ;;
762 -nodepend | --nodepend | -nd | --nd)
763 NODEPEND=t ;;
764
765 -postclean | --postclean | -pc | --pc)
766 POSTCLEAN=t ;;
767
768 -mpi) MPI=t ;;
769
770 -adm | -ad) ADM=t ;;
771
772 -ieee) IEEE=true ;;
773 -noieee) IEEE= ;;
774
775 -verbose) verbose=2 ;;
776 -debug) debug=1 ;;
777 -quiet) verbose=0 ;;
778
779 -deldir | -dd) DELDIR=t ;;
780
781 -*)
782 echo "Error: unrecognized option: "$ac_option
783 usage
784 ;;
785
786 *)
787 echo "Error: unrecognized argument: "$ac_option
788 usage
789 ;;
790
791 esac
792
793 done
794
795 if test "x$QUICK" = xt ; then
796 NOGENMAKE=t
797 NOCLEAN=t
798 NODEPEND=t
799 fi
800
801 if test "x$TESTDIRS" = x ; then
802 TESTDIRS=`scandirs`
803 fi
804
805 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
806 OPTFILE=$MITGCM_OF
807 fi
808
809 if test "x$ADM" = xt -a "x$COMMAND" = x ; then
810 COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1"
811 fi
812
813 if test "x$COMMAND" = x ; then
814 COMMAND="$MAKE output.txt"
815 fi
816
817 echo "OK"
818
819 # create the FORTRAN comparison code
820 createcodelet
821
822 # build the mpack utility
823 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
824 echo "skipping mpack build"
825 else
826 build_mpack
827 fi
828
829 # Create a uniquely named directory to store results
830 MACH=`hostname`
831 UNAMEA=`uname -a`
832 DATE=`date +%Y%m%d`
833 BASE="tr_"$MACH"_"$DATE"_"
834 if test "x$OUTDIR" != x ; then
835 BASE="tr_"$OUTDIR"_"$DATE"_"
836 fi
837 DNUM=0
838 DRESULTS="$BASE$DNUM"
839 while test -e $DRESULTS ; do
840 DNUM=$(( $DNUM + 1 ))
841 DRESULTS="$BASE$DNUM"
842 done
843 mkdir $DRESULTS
844 RETVAL=$?
845 if test "x$RETVAL" != x0 ; then
846 echo "ERROR: Can't create results directory \"./$DRESULTS\""
847 exit 1
848 fi
849 SUMMARY="$DRESULTS/summary.txt"
850 printf "Start time: " >> $SUMMARY
851 start_date=`date`
852 echo $start_date > $SUMMARY
853
854 of_path=
855 if test "x$OPTFILE" != xNONE ; then
856 if test -r $OPTFILE ; then
857 # get the path
858 path=${OPTFILE%/*}
859 if test "x$path" = x ; then
860 of_path=`pwd`
861 else
862 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
863 fi
864 file=${OPTFILE##*/}
865 OPTFILE=$of_path/$file
866 cp $OPTFILE $DRESULTS
867 echo >> $SUMMARY
868 echo " OPTFILE=$OPTFILE" >> $SUMMARY
869 else
870 echo | tee $SUMMARY
871 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
872 exit 1
873 fi
874 else
875 echo >> $SUMMARY
876 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
877 echo " so the genmake default will be used." >> $SUMMARY
878 fi
879 echo
880 echo >> $SUMMARY
881 if test "x$ADM" = x ; then
882 line_0=" ----T----- ----S----- ----U----- ----V-----"
883 line_1="G D M c m s m s m s m s"
884 line_2="E p a R g m m e . m m e . m m e . m m e ."
885 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
886 line_4="2 d e n d n x n . n x n . n x n . n x n ."
887 for ii in $PTRACERS_NUM ; do
888 # tst=`eval 'echo $HAVE_PTR0'$ii`
889 # if test "x$tst" = xt ; then
890 line_0="$line_0 --PTR 0"$ii"--"
891 line_1="$line_1 m s"
892 line_2="$line_2 m m e ."
893 line_3="$line_3 i a a d"
894 line_4="$line_4 n x n ."
895 # fi
896 done
897 echo "$line_0" | tee -a $SUMMARY
898 echo "$line_1" | tee -a $SUMMARY
899 echo "$line_2" | tee -a $SUMMARY
900 echo "$line_3" | tee -a $SUMMARY
901 echo "$line_4" | tee -a $SUMMARY
902 echo " " | tee -a $SUMMARY
903 else
904 echo "ADJOINT=true" >> $SUMMARY
905 echo >> $SUMMARY
906 cat << EOF | tee -a $SUMMARY
907 G D M C G
908 E p a R o r
909 N n k u s a
910 2 d e n t d
911
912 EOF
913 fi
914
915 # ...and each test directory...
916 for dir in $TESTDIRS ; do
917
918 # Cleanup only!
919 if test "x$CLEANUP" = xt ; then
920 if test -r $dir/build/Makefile ; then
921 ( cd $dir/build ; make CLEAN )
922 fi
923 if test -r $dir/input/Makefile ; then
924 ( cd $dir/input ; make CLEAN )
925 fi
926 (
927 cd $dir
928 rm -rf tr_run.*
929 )
930 continue
931 fi
932
933 # Verify that the testdir exists and contains previous
934 # results in the correct location--or skip this directory!
935 fout=
936 if test "x$ADM" = x ; then
937 fout=$dir"/results/output.txt"
938 else
939 fout=$dir"/results_ad/output.txt_adm"
940 fi
941 if test ! -r $fout ; then
942 echo "can't read \"$fout\" -- skipping $dir"
943 continue
944 fi
945 if test "x$ADM" = x ; then
946 check_for_add_mon_output $fout
947 fi
948
949 # Check for additional types of monitor output
950
951 builddir="input"
952 rundir="input"
953 use_seperate_build=0
954 if test -d $dir/build -a -r $dir/build ; then
955 builddir="build"
956 rundir="build"
957 use_seperate_build=1
958 linkdata $use_seperate_build $dir/$rundir
959 fi
960
961 # Check whether there are "extra runs" for this testdir
962 extra_runs=
963 if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then
964 ex_run_dirs=`( cd $dir ; echo input.* )`
965 echo "ex_run_dirs='$ex_run_dirs'"
966 for exd in $ex_run_dirs ; do
967 name=`echo $exd | sed -e 's/input.//g'`
968 outf="$dir/results/output.txt.$name"
969 if test -f $outf -a -r $outf ; then
970 extra_runs="$extra_runs $name"
971 fi
972 done
973 fi
974
975 if test "x$ADM" = x ; then
976 code_dir=code
977 CODE_DIR=$dir/code
978 else
979 code_dir=code_ad
980 CODE_DIR=$dir/code_ad
981 fi
982 BUILD_DIR=$dir/$builddir
983
984 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
985 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
986 continue
987 fi
988
989 echo "-------------------------------------------------------------------------------"
990 echo
991 echo "Experiment: $dir"
992 echo
993 unset genmake makedepend make run
994 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
995
996 # Create an output dir for each OPTFILE/tdir combination
997 rel_CDIR=$DRESULTS"/"$dir
998 mkdir $rel_CDIR
999 CDIR=`pwd`"/$rel_CDIR"
1000
1001 if test "x$CLEANUP" = xt ; then
1002 makeclean $dir/$builddir
1003 else
1004 genmakemodel $dir/$builddir && genmake=Y \
1005 && makeclean $dir/$builddir \
1006 && symlink_mpifiles $dir $code_dir $builddir \
1007 && makedependmodel $dir/$builddir && makedepend=Y \
1008 && makemodel $dir/$builddir && make=Y \
1009 && linkdata $use_seperate_build $dir/$rundir \
1010 && runmodel $dir/$rundir && run=Y \
1011 && results=`testoutput $dir $rundir`
1012 fi
1013
1014 echo
1015 if test "x$ADM" = x ; then
1016 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1017 echo
1018 echo "$fres" >> $SUMMARY
1019 echo "fresults='$fres'" > $CDIR"/summary.txt"
1020 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1021 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1022 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1023 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1024
1025 for ex in $extra_runs ; do
1026 unset run
1027 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1028 # Create an output dir for each OPTFILE/tdir.ex combination
1029 rel_CDIR=$DRESULTS"/"$dir"."$ex
1030 mkdir $rel_CDIR
1031 CDIR=`pwd`"/$rel_CDIR"
1032 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1033 for ldir in input.$ex input ; do
1034 (
1035 cd "$dir/$ldir" > /dev/null 2>&1
1036 ls -1 2>/dev/null \
1037 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1038 ) > tr_exrun_links
1039 (
1040 cd "$dir/tr_run.$ex"
1041 cat ../../tr_exrun_links | while read i ; do
1042 if test ! "x$i" = x ; then
1043 test ! -r $i && ln -s "../"$ldir"/"$i $i
1044 fi
1045 done
1046 )
1047 test -e tr_exrun_links && rm -f tr_exrun_links
1048 done
1049 ldir=build
1050 (
1051 cd "$dir/$ldir" > /dev/null 2>&1
1052 ls -1 2>/dev/null
1053 ) > tr_exrun_tmp
1054 echo "Makefile" > tr_exrun_links
1055 echo "mitgcmuv" >> tr_exrun_links
1056 cat tr_exrun_tmp | grep '\.[fFhco]$' >> tr_exrun_links
1057 (
1058 cd "$dir/tr_run.$ex"
1059 cat ../../tr_exrun_links | while read i ; do
1060 if test ! "x$i" = x ; then
1061 test ! -r $i && ln -s "../"$ldir"/"$i $i
1062 fi
1063 done
1064 )
1065 test -e tr_exrun_tmp && rm -f tr_exrun_tmp
1066 test -e tr_exrun_links && rm -f tr_exrun_links
1067 runmodel $dir/tr_run.$ex && run=Y \
1068 && results=`testoutput $dir tr_run.$ex "."$ex`
1069 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1070 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1071 fres="$fres.$ex"
1072 echo
1073 echo "$fres" >> $SUMMARY
1074 echo "fresults='$fres'" > $CDIR"/summary.txt"
1075 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1076 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1077 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1078 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1079 done
1080 else
1081 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1082 fres=$fres"$results $dir"
1083 echo
1084 echo "$fres" >> $SUMMARY
1085 echo "fresults='$fres'" > $CDIR"/summary.txt"
1086 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1087 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1088 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1089 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1090 fi
1091
1092 postclean $dir/$builddir
1093
1094 echo "-------------------------------------------------------------------------------"
1095
1096 done
1097
1098 printf "Start time: " >> $SUMMARY
1099 echo $start_date >> $SUMMARY
1100 printf "End time: " >> $SUMMARY
1101 date >> $SUMMARY
1102
1103 # If addresses were supplied and mpack built successfully, then try
1104 # to send email using mpack.
1105 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1106 echo "No results email was sent."
1107 else
1108 if test "x$HAVE_MPACK" = xt ; then
1109 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1110 && gzip $DRESULTS".tar" \
1111 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1112 RETVAL=$?
1113 if test "x$RETVAL" != x0 ; then
1114 echo
1115 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1116 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1117 echo " summary of results from the directory \"$DRESULTS\"."
1118 echo
1119 else
1120 echo
1121 echo "An email containing results was sent to the following addresses:"
1122 echo " \"$ADDRESSES\""
1123 echo
1124 fi
1125 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1126 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1127 fi
1128 fi
1129
1130 # rm -f tmp_cmpnum.f a.out
1131 rm -f tmp_cmpnum.c tmp_cmpnum
1132
1133 if test "x$CLEANUP" != xt ; then
1134 cat $SUMMARY | sed 's/ -- -- -- --//g'
1135 if test -e tr_out.txt ; then
1136 mv tr_out.txt tr_out.txt.old
1137 fi
1138 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1139 fi
1140
1141 if test "x$DELDIR" = xt ; then
1142 rm -rf $DRESULTS
1143 fi

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