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Revision 1.71 - (show annotations) (download)
Tue Aug 16 17:12:46 2005 UTC (14 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.70: +6 -1 lines
add a test for NAN & INF

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.70 2005/07/28 21:12:15 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mpi) use MPI input files"
15 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
16 echo " (DEF=\"-ieee\")"
17 echo " (-optfile=|-of=)STRING list of optfiles to use"
18 echo " (-a|-addr) STRING list of email recipients"
19 echo " (DEF=\"edhill@mitgcm.org\")"
20 echo " (-t|-tdir) STRING list of test dirs to use"
21 echo " (DEF=\"\" which builds all)"
22 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
23 echo " Bourne-compatible \"sh\" shell"
24 echo " (DEF=\"\" for \"bash\")"
25 echo " (-adm|-ad) perform an adjoint run"
26 echo " (-command) STRING command to run"
27 echo " (DEF=\"make output.txt\")"
28 echo " (-m|-make) STRING command to use for \"make\""
29 echo " (DEF=\"make\")"
30 echo " (-odir) STRING used to build output directory name"
31 echo " (DEF=\"hostname\")"
32 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
33 echo " (DEF=\"1 2 3 4 5\")"
34 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
35 echo " (-clean) *ONLY* run \"make CLEAN\""
36 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
37 echo " (-nogenmake|-ng) skip the genmake stage"
38 echo " (-noclean|-nc) skip the \"make clean\" stage"
39 echo " (-nodepend|-nd) skip the \"make depend\" stage"
40 echo " (-deldir|-dd) on success, delete the output directory"
41 echo
42 echo "and where STRING can be a whitespace-delimited list"
43 echo "such as:"
44 echo
45 echo " -t 'exp0 exp2 exp3' "
46 echo " -addr='abc@123.com testing@home.org'"
47 echo
48 echo "provided that the expression is properly quoted within the current"
49 echo "shell (note the use of single quotes to protect white space)."
50 echo
51 exit 1
52 }
53
54 # build the mpack utility
55 build_mpack()
56 {
57 printf "building the mpack utility... "
58 if test ! -x "$MPACKDIR/mpack" ; then
59 if test ! -d $MPACKDIR ; then
60 echo
61 echo "Error: can't find \"$MPACKDIR\""
62 echo " are you sure this program is being run in the correct "
63 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
64 echo
65 HAVE_MPACK=f
66 fi
67 printf "building mpack... "
68 if test "x$CC" = x ; then
69 export CC=cc
70 fi
71 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
72 RETVAL=$?
73 if test "x$RETVAL" != x0 ; then
74 echo
75 echo "Error building the mpack tools at: $MPACK_DIR"
76 echo
77 HAVE_MPACK=f
78 else
79 rm -f tr_build_mpack.out
80 HAVE_MPACK=t
81 fi
82 else
83 HAVE_MPACK=t
84 fi
85 echo "OK"
86 }
87
88 testoutput_for_prop()
89 {
90 # testoutput_for_prop dir s1 label subdir extension
91 #
92 # compares files in $dir/$subdir/output.txt and $dir/results/output.txt
93 # using search strings s1 and text label
94
95 if [ $debug -gt 0 ]; then
96 echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
97 fi
98 if [ -r $1/$4/output.txt ]; then
99 grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
100 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
101 if [ $lncntA -lt 3 ]; then
102 if [ $verbose -gt 0 ]; then
103 echo Not enough lines of output when searching for "$2" 1>&2
104 fi
105 return 99
106 fi
107 else
108 echo testoutput_for_prop: output.txt from model run was not readable 1>&2
109 return 99
110 fi
111 if [ $debug -gt 0 ]; then
112 echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2
113 fi
114 grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt
115 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
116 if [ $lncntB -lt 3 ]; then
117 if [ $verbose -gt 0 ]; then
118 echo Not enough lines of output when searching for "$2" 1>&2
119 fi
120 return 99
121 fi
122 if [ $lncntA -ne $lncntB ]; then
123 if [ $verbose -gt 0 ]; then
124 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
125 fi
126 return 99
127 fi
128 non_real_numb=`egrep -c -i 'NAN|INF' tmp1.txt`
129 if [ $non_real_numb -gt 0 ]; then
130 echo testoutput_for_prop: output.txt has $non_real_numb not real numbers 1>&2
131 return 99
132 fi
133 if [ $debug -gt 0 ]; then
134 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
135 fi
136 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
137 if [ $debug -gt 0 ]; then
138 echo testoutput_for_prop: compare_lines 1>&2
139 fi
140 if [ $verbose -gt 1 ]; then
141 cat tmp3.txt 1>&2
142 fi
143 echo "-1" >> tmp3.txt
144 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
145 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
146 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
147 if [ $digits_of_similarity -eq 99 ]; then
148 if [ $verbose -gt 0 ]; then
149 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
150 fi
151 digits_of_similarity=99
152 else
153 if [ $verbose -gt 0 ]; then
154 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
155 fi
156 fi
157 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
158
159 return $digits_of_similarity
160 }
161
162 dashnum()
163 {
164 # dashnum n1 n2 n3 ...
165 #
166 # print numbers using %3i format or "--" if number = 99
167
168 for num in $@ ; do
169 if [ $num = 99 ]; then
170 printf ' --'
171 else
172 printf '%3i' $num
173 fi
174 done
175 }
176
177 testoutput_ad()
178 {
179 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt
180 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt
181 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt
182 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt
183 join t05.txt t15.txt > t5.txt
184 join t06.txt t16.txt > t6.txt
185 echo "-1" >> t5.txt
186 echo "-1" >> t6.txt
187 digits_5=`./tmp_cmpnum < t5.txt`
188 digits_6=`./tmp_cmpnum < t6.txt`
189 dashnum $digits_5 $digits_6
190 rm -f t[01][56].txt t[56].txt
191 }
192
193 check_for_add_mon_output()
194 {
195 # Check for additional types of monitor output
196 if test "x$1" = x ; then
197 return
198 fi
199
200 for ii in $PTRACERS_NUM ; do
201 eval "HAVE_PTR0"$ii"=f"
202 done
203
204 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
205 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
206 for ii in $PTRACERS_NUM ; do
207 for jj in $ptr_add ; do
208 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
209 tst=`grep $name $1 | wc -l | awk '{print $1}'`
210 if test ! "x$tst" = x0 ; then
211 eval "HAVE_PTR0"$ii"=t"
212 fi
213 done
214 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
215 done
216 }
217
218 testoutput()
219 {
220 # testoutput directory subdir extension
221 #
222 # test output in "directory"
223 if test "x$ADM" = x ; then
224 if [ $debug -gt 0 ]; then
225 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
226 fi
227 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
228 if [ $debug -gt 0 ]; then
229 echo testoutput: cg2dres=$cg2dres 1>&2
230 fi
231 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
232 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
233 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
234 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
235 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
236 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
237 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
238 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
239 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
240 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
241 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
242 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
243 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
244 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
245 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
246 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
247
248 # This is for PTRACERS
249 for ii in $PTRACERS_NUM ; do
250 eval `echo "p0"$ii"_min=99"`
251 eval `echo "p0"$ii"_max=99"`
252 eval `echo "p0"$ii"_mean=99"`
253 eval `echo "p0"$ii"_sd=99"`
254 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
255 #echo 'tst = '$tst
256 if test "x$tst" = xt ; then
257 a="trcstat_ptracer0"
258 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
259 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
260 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
261 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
262 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
263 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
264 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
265 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
266 fi
267 done
268
269 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
270 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
271 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
272 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
273 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
274 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
275 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
276
277 eval "dashnum $allargs"
278
279 else
280 testoutput_ad $1 $2 "precision_grdchk_result"
281 fi
282 }
283
284 genmakemodel()
285 {
286 # genmakemodel directory
287 if test "x$NOGENMAKE" = xt ; then
288 echo "genmake skipped!"
289 else
290 if test "x$BASH" = x ; then
291 GENMAKE2="../../../tools/genmake2"
292 else
293 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
294 fi
295 (
296 cd $1;
297 command="$GENMAKE2 -ds -m $MAKE"
298 if test "x$ADM" = x ; then
299 command="$command --mods=../code"
300 else
301 command="$command --mods=../code_ad"
302 command="$command -adof=../../../tools/adjoint_options/adjoint_staf"
303 fi
304 if test "x$OPTFILE" != xNONE ; then
305 command="$command --optfile=$OPTFILE"
306 fi
307 if test "x$IEEE" != x ; then
308 command="$command -ieee"
309 fi
310 if test "x$MPI" = xt ; then
311 command="$command -mpi"
312 fi
313 printf 'genmake ... ' 1>&2
314 $command > make.log 2>&1
315 RETVAL=$?
316 # Reduce the size of the testing emails!
317 head -100 Makefile > $CDIR/Makefile_head
318 if test "x$RETVAL" != x0 ; then
319 tail make.log
320 echo "genmakemodel: genmake failed" 1>&2
321 cp genmake_* make.log $CDIR
322 return 1
323 else
324 echo "successful" 1>&2
325 fi
326 )
327 fi
328 }
329
330 makeclean()
331 {
332 # makeclean directory
333 if test "x$NOCLEAN" = xt ; then
334 echo "make CLEAN skipped!"
335 else
336 (
337 cd $1;
338 if test -e output.txt ; then
339 rm -f output.txt
340 fi
341 printf 'make CLEAN ... ' 2>&1
342 if test -r Makefile ; then
343 $MAKE CLEAN >> make.log 2>&1
344 RETVAL=$?
345 if test "x$RETVAL" != x0 ; then
346 tail make.log
347 echo "makeclean: \"make CLEAN\" failed" 1>&2
348 cp make.log $CDIR"/make.log"
349 return 1
350 fi
351 fi
352 echo successful 1>&2
353 exit 0
354 )
355 fi
356 }
357
358 postclean()
359 {
360 # postclean directory
361 if test "x$POSTCLEAN" = xt ; then
362 (
363 cd $1;
364 if test -r Makefile ; then
365 $MAKE CLEAN >> /dev/null 2>&1
366 fi
367 exit 0
368 )
369 fi
370 }
371
372 makedependmodel()
373 {
374 # makedependmodel directory
375 if test "x$NODEPEND" = xt ; then
376 echo "make depend skipped!"
377 else
378 (
379 cd $1;
380 printf 'make depend ... ' 1>&2
381 $MAKE depend >> make.log 2>&1
382 RETVAL=$?
383 if test "x$RETVAL" != x0 ; then
384 tail make.log
385 echo "makedependmodel: make depend failed" 1>&2
386 cp make.log $CDIR"/make.log"
387 return 1
388 else
389 echo successful 1>&2
390 fi
391 )
392 fi
393 }
394
395 makemodel()
396 {
397 # makemodel directory
398 (
399 cd $1;
400 if test -r Makefile ; then
401 printf 'make ... ' 1>&2
402 if test "x$ADM" = x ; then
403 if test "x$JOBS" = x ; then
404 $MAKE >> make.log 2>&1
405 else
406 $MAKE -j $JOBS >> make.log 2>&1
407 fi
408 else
409 $MAKE adall >> make.log 2>&1
410 fi
411 RETVAL=$?
412 if test "x$RETVAL" != x0 ; then
413 tail make.log
414 echo failed 1>&2
415 cp make.log $CDIR"/make.log"
416 return 1
417 else
418 echo successful 1>&2
419 fi
420 fi
421 )
422 }
423
424 symlink_mpifiles()
425 {
426 # Put special links so that MPI specific files are used
427 # This MUST be invoked between makeclean and makelinks because
428 # the Makefile will link to non-mpi files by default
429
430 dir=$1
431 code_dir=$2
432 BUILD_DIR=$dir/$3
433 CODE_DIR=$dir/$code_dir
434
435 # These are files that should replace their counter-part when using -mpi
436 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
437
438 # Is this an MPI run?
439 if test "x$MPI" = xt ; then
440 # YES: We symbolically link these files to the build
441 # dir so long as there is no real file in place
442 for ii in $MPI_FILES ; do
443 i=`echo $ii | sed 's:^\./::'`
444 name=`echo $i | sed 's:_mpi::' `
445 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
446 RETVAL=$?
447 if test "x$RETVAL" != x0 ; then
448 if ! test -f $BUILD_DIR/$i ; then
449 #echo Linking $name to $i
450 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
451 fi
452 fi
453 done
454 else
455 # NO: We undo any _mpi symbolically linked files
456 for ii in $MPI_FILES ; do
457 i=`echo $ii | sed 's:^\./::'`
458 name=`echo $i | sed 's:_mpi::' `
459 if test -L $BUILD_DIR/$name ; then
460 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
461 RETVAL=$?
462 if test "x$RETVAL" = x0 ; then
463 #echo Un-linking $name from $linktarg
464 rm -f $BUILD_DIR/$name
465 fi
466 fi
467 done
468 fi
469
470 }
471
472 linkdata()
473 {
474 # linkdata flag
475 #
476 # symbolically link data files to run directory
477 if test "x$1" = x1 ; then
478 (
479 cd $2
480 if test "x$ADM" = x ; then
481 files=`( cd ../input ; ls -1 | grep -v CVS )`
482 for i in $files ; do
483 if test ! -d "../input/"$i -a ! -f $i ; then
484 ln -sf "../input/"$i $i
485 fi
486 done
487 else
488 files=`( cd ../input ; ls -1 *.bin | grep -v CVS )`
489 for i in $files ; do
490 if test ! -d "../input/"$i ; then
491 ln -sf "../input/"$i $i
492 fi
493 done
494 files=`( cd ../input_ad ; ls -1 | grep -v CVS )`
495 for i in $files ; do
496 if test ! -d "../input_ad/"$i ; then
497 ln -sf "../input_ad/"$i $i
498 fi
499 done
500 fi
501 )
502 fi
503 }
504
505 runmodel()
506 {
507 # runmodel directory
508 #
509 # runs "$COMMAND in "directory"
510 # (where "$COMMAND" is relative to "directory")
511 (
512 cd $1
513 printf 'runmodel ... ' 1>&2
514 # make output.txt
515 echo
516 rm -f run.log
517 # echo "COMMAND='$COMMAND'"
518 # echo "pwd='"`pwd`"'"
519 ( eval $COMMAND ) > run.log 2>&1
520 RETVAL=$?
521 if test "x$RETVAL" = x0 ; then
522 tail run.log
523 echo successful 1>&2
524 # === Reduce the size of the testing emails!
525 # if test "x$ADM" = x ; then
526 # cp output.txt $CDIR"/output.txt"
527 # else
528 # cp output.txt_adm $CDIR"/output.txt_adm"
529 # fi
530 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
531 return 0
532 else
533 tail run.log
534 echo failed 1>&2
535 cp run.log $CDIR"/run.log"
536 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
537 return 1
538 fi
539 )
540 }
541
542 createcodelet()
543 {
544 # create codelet for comparing model output
545
546 printf "creating the comparison code... "
547 cat > tmp_cmpnum.c <<EOF
548 #include <stdio.h>
549 #include <math.h>
550 int main( int argc, char** argv ) {
551 int linnum,best,lncnt;
552 double a,b,abave,relerr;
553 best = -22;
554 lncnt = 0;
555 while( 1 & (lncnt+=1) < 999 ) {
556 scanf("%d", &linnum);
557 if (linnum == -1) break;
558 scanf("%lf", &a); scanf("%lf", &b);
559 abave = 0.5*(fabs(a)+fabs(b));
560 if (abave > 0.0) {
561 relerr=fabs(a-b)/abave;
562 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
563 else { linnum = -16 ; }
564 best = (best > linnum) ? best : linnum;
565 }
566 }
567 if (lncnt == 999) best=-29;
568 printf("%d\n", -best);
569 return 0;
570 }
571 EOF
572 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
573
574 if [ -x ./tmp_cmpnum ]; then
575 echo "OK"
576 return 0
577 else
578 echo
579 echo "ERROR: failed to compile comparison code -- please specify"
580 echo " a C compiler using the CC environment variable."
581 exit 1
582 fi
583 }
584
585 formatresults()
586 {
587 # formatresults expt genmake depend make run results*
588
589 nm=$1
590 printf '%s %s %s %s' $2 $3 $4 $5
591 shift; shift; shift; shift; shift;
592 printf '%3s' $@
593
594 if [ $1 = '--' ]; then
595 printf ' N/O '
596 else
597 if [ $1 -gt 12 ]; then
598 printf ' pass'
599 else
600 printf ' FAIL'
601 fi
602 fi
603 printf ' %s' $nm
604 printf '\n'
605
606 }
607
608 show_help()
609 {
610 cat - << EOF
611 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
612
613 -help|-h Show this help message
614 -quiet Reduce the amount of output
615 -verbose Produce copious amounts of output
616 -debug Produce even more output which will mean nothing to most
617 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
618 -clean Do "make CLEAN" after compiling and testing.
619 -cleanup Aggresively removes all model output, executables and object files
620 and then exits. Use with care.
621
622 Normal usage:
623 $0 * Configure, compile, run and analyze in all experiment directories
624 EOF
625 }
626
627 scandirs()
628 {
629 if [ $# -eq 0 ]; then
630 for arg in * ; do
631 test -d $arg/input && echo $arg
632 done
633 else
634 echo $*
635 fi
636 }
637
638
639 ###############################################################################
640
641
642 # Default properties
643 debug=0
644 verbose=1
645 clean=0
646 expts=''
647 # ieee=1
648
649 IEEE=true
650 if test "x$MITGCM_IEEE" != x ; then
651 IEEE=$MITGCM_IEEE
652 fi
653
654
655 CLEANUP=f
656 QUICK=f
657 NOGENMAKE=f
658 NOCLEAN=f
659 NODEPEND=f
660 POSTCLEAN=f
661
662 BASH=
663 OPTFILE=NONE
664 ADDRESSES=
665 TESTDIRS=
666 MPACKDIR="../tools/mpack-1.6"
667 HAVE_MPACK=
668 MPACK="$MPACKDIR/mpack"
669 COMMAND=
670 if test "x$MAKE" = x ; then
671 MAKE=make
672 fi
673 if test "x$CC" = x ; then
674 CC=cc
675 fi
676 JOBS=
677 MPI=f
678 OUTDIR=
679 DELDIR=
680
681 ADM=
682
683 # Additional monitor types
684 PTRACERS_NUM="1 2 3 4 5"
685
686 printf "parsing options... "
687
688 ac_prev=
689 for ac_option ; do
690
691 # If the previous option needs an argument, assign it.
692 if test -n "$ac_prev"; then
693 eval "$ac_prev=\$ac_option"
694 ac_prev=
695 continue
696 fi
697
698 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
699
700 case $ac_option in
701
702 -help | --help | -h | --h)
703 usage ;;
704
705 -optfile | --optfile | -of | --of)
706 ac_prev=OPTFILE ;;
707 -optfile=* | --optfile=* | -of=* | --of=*)
708 OPTFILE=$ac_optarg ;;
709
710 -addr | --addr | -a | --a)
711 ac_prev=ADDRESSES ;;
712 -addr=* | --addr=*)
713 ADDRESSES=$ac_optarg ;;
714
715 -tdir | --tdir | -t | --t)
716 ac_prev=TESTDIRS ;;
717 -tdir=* | --tdir=*)
718 TESTDIRS=$ac_optarg ;;
719
720 -bash | --bash | -b | --b)
721 ac_prev=BASH ;;
722 -bash=* | --bash=*)
723 BASH=$ac_optarg ;;
724
725 -command | --command | -c | --c)
726 ac_prev=COMMAND ;;
727 -command=* | --command=*)
728 COMMAND=$ac_optarg ;;
729
730 -make | --make | -m | --m)
731 ac_prev=MAKE ;;
732 -make=* | --make=*)
733 MAKE=$ac_optarg ;;
734
735 -odir | --odir)
736 ac_prev=OUTDIR ;;
737 -odir=* | --odir=*)
738 OUTDIR=$ac_optarg ;;
739
740 -ptracers | --ptracers | -ptr | --ptr)
741 ac_prev=PTRACERS_NUM ;;
742 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
743 PTRACERS_NUM=$ac_optarg ;;
744
745 -j) ac_prev=JOBS ;;
746 -j=*) JOBS=$ac_optarg ;;
747
748 -clean | --clean)
749 CLEANUP=t ; DELDIR=t ;;
750
751 -quick | --quick | -q | --q)
752 QUICK=t ;;
753 -nogenmake | --nogenmake | -ng | --ng)
754 NOGENMAKE=t ;;
755 -noclean | --noclean | -nc | --nc)
756 NOCLEAN=t ;;
757 -nodepend | --nodepend | -nd | --nd)
758 NODEPEND=t ;;
759
760 -postclean | --postclean | -pc | --pc)
761 POSTCLEAN=t ;;
762
763 -mpi) MPI=t ;;
764
765 -adm | -ad) ADM=t ;;
766
767 -ieee) IEEE=true ;;
768 -noieee) IEEE= ;;
769
770 -verbose) verbose=2 ;;
771 -debug) debug=1 ;;
772 -quiet) verbose=0 ;;
773
774 -deldir | -dd) DELDIR=t ;;
775
776 -*)
777 echo "Error: unrecognized option: "$ac_option
778 usage
779 ;;
780
781 *)
782 echo "Error: unrecognized argument: "$ac_option
783 usage
784 ;;
785
786 esac
787
788 done
789
790 if test "x$QUICK" = xt ; then
791 NOGENMAKE=t
792 NOCLEAN=t
793 NODEPEND=t
794 fi
795
796 if test "x$TESTDIRS" = x ; then
797 TESTDIRS=`scandirs`
798 fi
799
800 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
801 OPTFILE=$MITGCM_OF
802 fi
803
804 if test "x$ADM" = xt -a "x$COMMAND" = x ; then
805 COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1"
806 fi
807
808 if test "x$COMMAND" = x ; then
809 COMMAND="$MAKE output.txt"
810 fi
811
812 echo "OK"
813
814 # create the FORTRAN comparison code
815 createcodelet
816
817 # build the mpack utility
818 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
819 echo "skipping mpack build"
820 else
821 build_mpack
822 fi
823
824 # Create a uniquely named directory to store results
825 MACH=`hostname`
826 UNAMEA=`uname -a`
827 DATE=`date +%Y%m%d`
828 BASE="tr_"$MACH"_"$DATE"_"
829 if test "x$OUTDIR" != x ; then
830 BASE="tr_"$OUTDIR"_"$DATE"_"
831 fi
832 DNUM=0
833 DRESULTS="$BASE$DNUM"
834 while test -e $DRESULTS ; do
835 DNUM=$(( $DNUM + 1 ))
836 DRESULTS="$BASE$DNUM"
837 done
838 mkdir $DRESULTS
839 RETVAL=$?
840 if test "x$RETVAL" != x0 ; then
841 echo "ERROR: Can't create results directory \"./$DRESULTS\""
842 exit 1
843 fi
844 SUMMARY="$DRESULTS/summary.txt"
845 printf "Start time: " >> $SUMMARY
846 start_date=`date`
847 echo $start_date > $SUMMARY
848
849 of_path=
850 if test "x$OPTFILE" != xNONE ; then
851 if test -r $OPTFILE ; then
852 # get the path
853 path=${OPTFILE%/*}
854 if test "x$path" = x ; then
855 of_path=`pwd`
856 else
857 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
858 fi
859 file=${OPTFILE##*/}
860 OPTFILE=$of_path/$file
861 cp $OPTFILE $DRESULTS
862 echo >> $SUMMARY
863 echo " OPTFILE=$OPTFILE" >> $SUMMARY
864 else
865 echo | tee $SUMMARY
866 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
867 exit 1
868 fi
869 else
870 echo >> $SUMMARY
871 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
872 echo " so the genmake default will be used." >> $SUMMARY
873 fi
874 echo
875 echo >> $SUMMARY
876 if test "x$ADM" = x ; then
877 line_0=" ----T----- ----S----- ----U----- ----V-----"
878 line_1="G D M c m s m s m s m s"
879 line_2="E p a R g m m e . m m e . m m e . m m e ."
880 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
881 line_4="2 d e n d n x n . n x n . n x n . n x n ."
882 for ii in $PTRACERS_NUM ; do
883 # tst=`eval 'echo $HAVE_PTR0'$ii`
884 # if test "x$tst" = xt ; then
885 line_0="$line_0 --PTR 0"$ii"--"
886 line_1="$line_1 m s"
887 line_2="$line_2 m m e ."
888 line_3="$line_3 i a a d"
889 line_4="$line_4 n x n ."
890 # fi
891 done
892 echo "$line_0" | tee -a $SUMMARY
893 echo "$line_1" | tee -a $SUMMARY
894 echo "$line_2" | tee -a $SUMMARY
895 echo "$line_3" | tee -a $SUMMARY
896 echo "$line_4" | tee -a $SUMMARY
897 echo " " | tee -a $SUMMARY
898 else
899 echo "ADJOINT=true" >> $SUMMARY
900 echo >> $SUMMARY
901 cat << EOF | tee -a $SUMMARY
902 G D M C G
903 E p a R o r
904 N n k u s a
905 2 d e n t d
906
907 EOF
908 fi
909
910 # ...and each test directory...
911 for dir in $TESTDIRS ; do
912
913 # Cleanup only!
914 if test "x$CLEANUP" = xt ; then
915 if test -r $dir/build/Makefile ; then
916 ( cd $dir/build ; make CLEAN )
917 fi
918 if test -r $dir/input/Makefile ; then
919 ( cd $dir/input ; make CLEAN )
920 fi
921 (
922 cd $dir
923 rm -rf tr_run.*
924 )
925 continue
926 fi
927
928 # Verify that the testdir exists and contains previous
929 # results in the correct location--or skip this directory!
930 fout=
931 if test "x$ADM" = x ; then
932 fout=$dir"/results/output.txt"
933 else
934 fout=$dir"/results_ad/output.txt_adm"
935 fi
936 if test ! -r $fout ; then
937 echo "can't read \"$fout\" -- skipping $dir"
938 continue
939 fi
940 if test "x$ADM" = x ; then
941 check_for_add_mon_output $fout
942 fi
943
944 # Check for additional types of monitor output
945
946 builddir="input"
947 rundir="input"
948 use_seperate_build=0
949 if test -d $dir/build -a -r $dir/build ; then
950 builddir="build"
951 rundir="build"
952 use_seperate_build=1
953 linkdata $use_seperate_build $dir/$rundir
954 fi
955
956 # Check whether there are "extra runs" for this testdir
957 extra_runs=
958 if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then
959 ex_run_dirs=`( cd $dir ; echo input.* )`
960 echo "ex_run_dirs='$ex_run_dirs'"
961 for exd in $ex_run_dirs ; do
962 name=`echo $exd | sed -e 's/input.//g'`
963 outf="$dir/results/output.txt.$name"
964 if test -f $outf -a -r $outf ; then
965 extra_runs="$extra_runs $name"
966 fi
967 done
968 fi
969
970 if test "x$ADM" = x ; then
971 code_dir=code
972 CODE_DIR=$dir/code
973 else
974 code_dir=code_ad
975 CODE_DIR=$dir/code_ad
976 fi
977 BUILD_DIR=$dir/$builddir
978
979 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
980 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
981 continue
982 fi
983
984 echo "-------------------------------------------------------------------------------"
985 echo
986 echo "Experiment: $dir"
987 echo
988 unset genmake makedepend make run
989 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
990
991 # Create an output dir for each OPTFILE/tdir combination
992 rel_CDIR=$DRESULTS"/"$dir
993 mkdir $rel_CDIR
994 CDIR=`pwd`"/$rel_CDIR"
995
996 if test "x$CLEANUP" = xt ; then
997 makeclean $dir/$builddir
998 else
999 genmakemodel $dir/$builddir && genmake=Y \
1000 && makeclean $dir/$builddir \
1001 && symlink_mpifiles $dir $code_dir $builddir \
1002 && makedependmodel $dir/$builddir && makedepend=Y \
1003 && makemodel $dir/$builddir && make=Y \
1004 && linkdata $use_seperate_build $dir/$rundir \
1005 && runmodel $dir/$rundir && run=Y \
1006 && results=`testoutput $dir $rundir`
1007 fi
1008
1009 echo
1010 if test "x$ADM" = x ; then
1011 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1012 echo
1013 echo "$fres" >> $SUMMARY
1014 echo "fresults='$fres'" > $CDIR"/summary.txt"
1015 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1016 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1017 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1018 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1019
1020 for ex in $extra_runs ; do
1021 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1022 for ldir in input.$ex input ; do
1023 (
1024 cd "$dir/$ldir" > /dev/null 2>&1
1025 ls -1 2>/dev/null \
1026 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1027 ) > tr_exrun_links
1028 (
1029 cd "$dir/tr_run.$ex"
1030 cat ../../tr_exrun_links | while read i ; do
1031 if test ! "x$i" = x ; then
1032 test ! -r $i && ln -s "../"$ldir"/"$i $i
1033 fi
1034 done
1035 )
1036 test -e tr_exrun_links && rm -f tr_exrun_links
1037 done
1038 ldir=build
1039 (
1040 cd "$dir/$ldir" > /dev/null 2>&1
1041 ls -1 Makefile *.[fFhco] mitgcmuv 2>/dev/null \
1042 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1043 ) > tr_exrun_links
1044 (
1045 cd "$dir/tr_run.$ex"
1046 cat ../../tr_exrun_links | while read i ; do
1047 if test ! "x$i" = x ; then
1048 test ! -r $i && ln -s "../"$ldir"/"$i $i
1049 fi
1050 done
1051 )
1052 test -e tr_exrun_links && rm -f tr_exrun_links
1053 runmodel $dir/tr_run.$ex && run=Y \
1054 && results=`testoutput $dir tr_run.$ex "."$ex`
1055 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1056 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1057 fres="$fres.$ex"
1058 echo
1059 echo "$fres" >> $SUMMARY
1060 echo "fresults='$fres'" > $CDIR"/summary.txt"
1061 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1062 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1063 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1064 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1065 done
1066 else
1067 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1068 fres=$fres"$results $dir"
1069 echo
1070 echo "$fres" >> $SUMMARY
1071 echo "fresults='$fres'" > $CDIR"/summary.txt"
1072 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1073 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1074 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1075 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1076 fi
1077
1078 postclean $dir/$builddir
1079
1080 echo "-------------------------------------------------------------------------------"
1081
1082 done
1083
1084 printf "Start time: " >> $SUMMARY
1085 echo $start_date >> $SUMMARY
1086 printf "End time: " >> $SUMMARY
1087 date >> $SUMMARY
1088
1089 # If addresses were supplied and mpack built successfully, then try
1090 # to send email using mpack.
1091 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1092 echo "No results email was sent."
1093 else
1094 if test "x$HAVE_MPACK" = xt ; then
1095 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1096 && gzip $DRESULTS".tar" \
1097 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1098 RETVAL=$?
1099 if test "x$RETVAL" != x0 ; then
1100 echo
1101 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1102 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1103 echo " summary of results from the directory \"$DRESULTS\"."
1104 echo
1105 else
1106 echo
1107 echo "An email containing results was sent to the following addresses:"
1108 echo " \"$ADDRESSES\""
1109 echo
1110 fi
1111 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1112 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1113 fi
1114 fi
1115
1116 # rm -f tmp_cmpnum.f a.out
1117 rm -f tmp_cmpnum.c tmp_cmpnum
1118
1119 if test "x$CLEANUP" != xt ; then
1120 cat $SUMMARY | sed 's/ -- -- -- --//g'
1121 if test -e tr_out.txt ; then
1122 mv tr_out.txt tr_out.txt.old
1123 fi
1124 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1125 fi
1126
1127 if test "x$DELDIR" = xt ; then
1128 rm -rf $DRESULTS
1129 fi

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