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Revision 1.69 - (show annotations) (download)
Thu Jul 28 16:32:34 2005 UTC (18 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.68: +2 -2 lines
no need to keep the tr_{hostname} dir when using testreport -clean

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.68 2005/06/07 22:21:47 edhill Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mpi) use MPI input files"
15 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
16 echo " (DEF=\"-ieee\")"
17 echo " (-optfile=|-of=)STRING list of optfiles to use"
18 echo " (-a|-addr) STRING list of email recipients"
19 echo " (DEF=\"edhill@mitgcm.org\")"
20 echo " (-t|-tdir) STRING list of test dirs to use"
21 echo " (DEF=\"\" which builds all)"
22 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
23 echo " Bourne-compatible \"sh\" shell"
24 echo " (DEF=\"\" for \"bash\")"
25 echo " (-adm|-ad) perform an adjoint run"
26 echo " (-command) STRING command to run"
27 echo " (DEF=\"make output.txt\")"
28 echo " (-m|-make) STRING command to use for \"make\""
29 echo " (DEF=\"make\")"
30 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
31 echo " (DEF=\"1 2 3 4 5\")"
32 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
33 echo " (-clean) *ONLY* run \"make CLEAN\""
34 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
35 echo " (-nogenmake|-ng) skip the genmake stage"
36 echo " (-noclean|-nc) skip the \"make clean\" stage"
37 echo " (-nodepend|-nd) skip the \"make depend\" stage"
38 echo " (-deldir|-dd) on success, delete the output directory"
39 echo
40 echo "and where STRING can be a whitespace-delimited list"
41 echo "such as:"
42 echo
43 echo " -t 'exp0 exp2 exp3' "
44 echo " -addr='abc@123.com testing@home.org'"
45 echo
46 echo "provided that the expression is properly quoted within the current"
47 echo "shell (note the use of single quotes to protect white space)."
48 echo
49 exit 1
50 }
51
52 # build the mpack utility
53 build_mpack()
54 {
55 printf "building the mpack utility... "
56 if test ! -x "$MPACKDIR/mpack" ; then
57 if test ! -d $MPACKDIR ; then
58 echo
59 echo "Error: can't find \"$MPACKDIR\""
60 echo " are you sure this program is being run in the correct "
61 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
62 echo
63 HAVE_MPACK=f
64 fi
65 printf "building mpack... "
66 if test "x$CC" = x ; then
67 export CC=cc
68 fi
69 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
70 RETVAL=$?
71 if test "x$RETVAL" != x0 ; then
72 echo
73 echo "Error building the mpack tools at: $MPACK_DIR"
74 echo
75 HAVE_MPACK=f
76 else
77 rm -f tr_build_mpack.out
78 HAVE_MPACK=t
79 fi
80 else
81 HAVE_MPACK=t
82 fi
83 echo "OK"
84 }
85
86 testoutput_for_prop()
87 {
88 # testoutput_for_prop dir s1 label subdir extension
89 #
90 # compares files in $dir/$subdir/output.txt and $dir/results/output.txt
91 # using search strings s1 and text label
92
93 if [ $debug -gt 0 ]; then
94 echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
95 fi
96 if [ -r $1/$4/output.txt ]; then
97 grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
98 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
99 if [ $lncntA -lt 3 ]; then
100 if [ $verbose -gt 0 ]; then
101 echo Not enough lines of output when searching for "$2" 1>&2
102 fi
103 return 99
104 fi
105 else
106 echo testoutput_for_prop: output.txt from model run was not readable 1>&2
107 return 99
108 fi
109 if [ $debug -gt 0 ]; then
110 echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2
111 fi
112 grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt
113 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
114 if [ $lncntB -lt 3 ]; then
115 if [ $verbose -gt 0 ]; then
116 echo Not enough lines of output when searching for "$2" 1>&2
117 fi
118 return 99
119 fi
120 if [ $lncntA -ne $lncntB ]; then
121 if [ $verbose -gt 0 ]; then
122 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
123 fi
124 return 99
125 fi
126 if [ $debug -gt 0 ]; then
127 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
128 fi
129 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
130 if [ $debug -gt 0 ]; then
131 echo testoutput_for_prop: compare_lines 1>&2
132 fi
133 if [ $verbose -gt 1 ]; then
134 cat tmp3.txt 1>&2
135 fi
136 echo "-1" >> tmp3.txt
137 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
138 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
139 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
140 if [ $digits_of_similarity -eq 99 ]; then
141 if [ $verbose -gt 0 ]; then
142 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
143 fi
144 digits_of_similarity=99
145 else
146 if [ $verbose -gt 0 ]; then
147 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
148 fi
149 fi
150 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
151
152 return $digits_of_similarity
153 }
154
155 dashnum()
156 {
157 # dashnum n1 n2 n3 ...
158 #
159 # print numbers using %3i format or "--" if number = 99
160
161 for num in $@ ; do
162 if [ $num = 99 ]; then
163 printf ' --'
164 else
165 printf '%3i' $num
166 fi
167 done
168 }
169
170 testoutput_ad()
171 {
172 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt
173 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt
174 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt
175 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt
176 join t05.txt t15.txt > t5.txt
177 join t06.txt t16.txt > t6.txt
178 echo "-1" >> t5.txt
179 echo "-1" >> t6.txt
180 digits_5=`./tmp_cmpnum < t5.txt`
181 digits_6=`./tmp_cmpnum < t6.txt`
182 dashnum $digits_5 $digits_6
183 rm -f t[01][56].txt t[56].txt
184 }
185
186 check_for_add_mon_output()
187 {
188 # Check for additional types of monitor output
189 if test "x$1" = x ; then
190 return
191 fi
192
193 for ii in $PTRACERS_NUM ; do
194 eval "HAVE_PTR0"$ii"=f"
195 done
196
197 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
198 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
199 for ii in $PTRACERS_NUM ; do
200 for jj in $ptr_add ; do
201 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
202 tst=`grep $name $1 | wc -l | awk '{print $1}'`
203 if test ! "x$tst" = x0 ; then
204 eval "HAVE_PTR0"$ii"=t"
205 fi
206 done
207 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
208 done
209 }
210
211 testoutput()
212 {
213 # testoutput directory subdir extension
214 #
215 # test output in "directory"
216 if test "x$ADM" = x ; then
217 if [ $debug -gt 0 ]; then
218 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
219 fi
220 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
221 if [ $debug -gt 0 ]; then
222 echo testoutput: cg2dres=$cg2dres 1>&2
223 fi
224 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
225 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
226 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
227 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
228 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
229 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
230 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
231 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
232 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
233 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
234 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
235 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
236 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
237 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
238 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
239 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
240
241 # This is for PTRACERS
242 for ii in $PTRACERS_NUM ; do
243 eval `echo "p0"$ii"_min=99"`
244 eval `echo "p0"$ii"_max=99"`
245 eval `echo "p0"$ii"_mean=99"`
246 eval `echo "p0"$ii"_sd=99"`
247 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
248 #echo 'tst = '$tst
249 if test "x$tst" = xt ; then
250 a="trcstat_ptracer0"
251 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
252 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
253 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
254 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
255 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
256 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
257 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
258 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
259 fi
260 done
261
262 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
263 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
264 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
265 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
266 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
267 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
268 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
269
270 eval "dashnum $allargs"
271
272 else
273 testoutput_ad $1 $2 "precision_grdchk_result"
274 fi
275 }
276
277 genmakemodel()
278 {
279 # genmakemodel directory
280 if test "x$NOGENMAKE" = xt ; then
281 echo "genmake skipped!"
282 else
283 if test "x$BASH" = x ; then
284 GENMAKE2="../../../tools/genmake2"
285 else
286 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
287 fi
288 (
289 cd $1;
290 command="$GENMAKE2 -ds -m $MAKE"
291 if test "x$ADM" = x ; then
292 command="$command --mods=../code"
293 else
294 command="$command --mods=../code_ad"
295 command="$command -adof=../../../tools/adjoint_options/adjoint_staf"
296 fi
297 if test "x$OPTFILE" != xNONE ; then
298 command="$command --optfile=$OPTFILE"
299 fi
300 if test "x$IEEE" != x ; then
301 command="$command -ieee"
302 fi
303 if test "x$MPI" = xt ; then
304 command="$command -mpi"
305 fi
306 printf 'genmake ... ' 1>&2
307 $command > make.log 2>&1
308 RETVAL=$?
309 # Reduce the size of the testing emails!
310 head -100 Makefile > $CDIR/Makefile_head
311 if test "x$RETVAL" != x0 ; then
312 tail make.log
313 echo "genmakemodel: genmake failed" 1>&2
314 cp genmake_* make.log $CDIR
315 return 1
316 else
317 echo "successful" 1>&2
318 fi
319 )
320 fi
321 }
322
323 makeclean()
324 {
325 # makeclean directory
326 if test "x$NOCLEAN" = xt ; then
327 echo "make CLEAN skipped!"
328 else
329 (
330 cd $1;
331 if test -e output.txt ; then
332 rm -f output.txt
333 fi
334 printf 'make CLEAN ... ' 2>&1
335 if test -r Makefile ; then
336 $MAKE CLEAN >> make.log 2>&1
337 RETVAL=$?
338 if test "x$RETVAL" != x0 ; then
339 tail make.log
340 echo "makeclean: \"make CLEAN\" failed" 1>&2
341 cp make.log $CDIR"/make.log"
342 return 1
343 fi
344 fi
345 echo successful 1>&2
346 exit 0
347 )
348 fi
349 }
350
351 postclean()
352 {
353 # postclean directory
354 if test "x$POSTCLEAN" = xt ; then
355 (
356 cd $1;
357 if test -r Makefile ; then
358 $MAKE CLEAN >> /dev/null 2>&1
359 fi
360 exit 0
361 )
362 fi
363 }
364
365 makedependmodel()
366 {
367 # makedependmodel directory
368 if test "x$NODEPEND" = xt ; then
369 echo "make depend skipped!"
370 else
371 (
372 cd $1;
373 printf 'make depend ... ' 1>&2
374 $MAKE depend >> make.log 2>&1
375 RETVAL=$?
376 if test "x$RETVAL" != x0 ; then
377 tail make.log
378 echo "makedependmodel: make depend failed" 1>&2
379 cp make.log $CDIR"/make.log"
380 return 1
381 else
382 echo successful 1>&2
383 fi
384 )
385 fi
386 }
387
388 makemodel()
389 {
390 # makemodel directory
391 (
392 cd $1;
393 if test -r Makefile ; then
394 printf 'make ... ' 1>&2
395 if test "x$ADM" = x ; then
396 if test "x$JOBS" = x ; then
397 $MAKE >> make.log 2>&1
398 else
399 $MAKE -j $JOBS >> make.log 2>&1
400 fi
401 else
402 $MAKE adall >> make.log 2>&1
403 fi
404 RETVAL=$?
405 if test "x$RETVAL" != x0 ; then
406 tail make.log
407 echo failed 1>&2
408 cp make.log $CDIR"/make.log"
409 return 1
410 else
411 echo successful 1>&2
412 fi
413 fi
414 )
415 }
416
417 symlink_mpifiles()
418 {
419 # Put special links so that MPI specific files are used
420 # This MUST be invoked between makeclean and makelinks because
421 # the Makefile will link to non-mpi files by default
422
423 dir=$1
424 code_dir=$2
425 BUILD_DIR=$dir/$3
426 CODE_DIR=$dir/$code_dir
427
428 # These are files that should replace their counter-part when using -mpi
429 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
430
431 # Is this an MPI run?
432 if test "x$MPI" = xt ; then
433 # YES: We symbolically link these files to the build
434 # dir so long as there is no real file in place
435 for ii in $MPI_FILES ; do
436 i=`echo $ii | sed 's:^\./::'`
437 name=`echo $i | sed 's:_mpi::' `
438 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
439 RETVAL=$?
440 if test "x$RETVAL" != x0 ; then
441 if ! test -f $BUILD_DIR/$i ; then
442 #echo Linking $name to $i
443 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
444 fi
445 fi
446 done
447 else
448 # NO: We undo any _mpi symbolically linked files
449 for ii in $MPI_FILES ; do
450 i=`echo $ii | sed 's:^\./::'`
451 name=`echo $i | sed 's:_mpi::' `
452 if test -L $BUILD_DIR/$name ; then
453 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
454 RETVAL=$?
455 if test "x$RETVAL" = x0 ; then
456 #echo Un-linking $name from $linktarg
457 rm -f $BUILD_DIR/$name
458 fi
459 fi
460 done
461 fi
462
463 }
464
465 linkdata()
466 {
467 # linkdata flag
468 #
469 # symbolically link data files to run directory
470 if test "x$1" = x1 ; then
471 (
472 cd $2
473 if test "x$ADM" = x ; then
474 files=`( cd ../input ; ls -1 | grep -v CVS )`
475 for i in $files ; do
476 if test ! -d "../input/"$i -a ! -f $i ; then
477 ln -sf "../input/"$i $i
478 fi
479 done
480 else
481 files=`( cd ../input ; ls -1 *.bin | grep -v CVS )`
482 for i in $files ; do
483 if test ! -d "../input/"$i ; then
484 ln -sf "../input/"$i $i
485 fi
486 done
487 files=`( cd ../input_ad ; ls -1 | grep -v CVS )`
488 for i in $files ; do
489 if test ! -d "../input_ad/"$i ; then
490 ln -sf "../input_ad/"$i $i
491 fi
492 done
493 fi
494 )
495 fi
496 }
497
498 runmodel()
499 {
500 # runmodel directory
501 #
502 # runs "$COMMAND in "directory"
503 # (where "$COMMAND" is relative to "directory")
504 (
505 cd $1
506 printf 'runmodel ... ' 1>&2
507 # make output.txt
508 echo
509 rm -f run.log
510 # echo "COMMAND='$COMMAND'"
511 # echo "pwd='"`pwd`"'"
512 ( eval $COMMAND ) > run.log 2>&1
513 RETVAL=$?
514 if test "x$RETVAL" = x0 ; then
515 tail run.log
516 echo successful 1>&2
517 # === Reduce the size of the testing emails!
518 # if test "x$ADM" = x ; then
519 # cp output.txt $CDIR"/output.txt"
520 # else
521 # cp output.txt_adm $CDIR"/output.txt_adm"
522 # fi
523 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
524 return 0
525 else
526 tail run.log
527 echo failed 1>&2
528 cp run.log $CDIR"/run.log"
529 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
530 return 1
531 fi
532 )
533 }
534
535 createcodelet()
536 {
537 # create codelet for comparing model output
538
539 printf "creating the comparison code... "
540 cat > tmp_cmpnum.c <<EOF
541 #include <stdio.h>
542 #include <math.h>
543 int main( int argc, char** argv ) {
544 int linnum,best,lncnt;
545 double a,b,abave,relerr;
546 best = -22;
547 lncnt = 0;
548 while( 1 & (lncnt+=1) < 999 ) {
549 scanf("%d", &linnum);
550 if (linnum == -1) break;
551 scanf("%lf", &a); scanf("%lf", &b);
552 abave = 0.5*(fabs(a)+fabs(b));
553 if (abave > 0.0) {
554 relerr=fabs(a-b)/abave;
555 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
556 else { linnum = -16 ; }
557 best = (best > linnum) ? best : linnum;
558 }
559 }
560 if (lncnt == 999) best=-29;
561 printf("%d\n", -best);
562 return 0;
563 }
564 EOF
565 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
566
567 if [ -x ./tmp_cmpnum ]; then
568 echo "OK"
569 return 0
570 else
571 echo
572 echo "ERROR: failed to compile comparison code -- please specify"
573 echo " a C compiler using the CC environment variable."
574 exit 1
575 fi
576 }
577
578 formatresults()
579 {
580 # formatresults expt genmake depend make run results*
581
582 nm=$1
583 printf '%s %s %s %s' $2 $3 $4 $5
584 shift; shift; shift; shift; shift;
585 printf '%3s' $@
586
587 if [ $1 = '--' ]; then
588 printf ' N/O '
589 else
590 if [ $1 -gt 12 ]; then
591 printf ' pass'
592 else
593 printf ' FAIL'
594 fi
595 fi
596 printf ' %s' $nm
597 printf '\n'
598
599 }
600
601 show_help()
602 {
603 cat - << EOF
604 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
605
606 -help|-h Show this help message
607 -quiet Reduce the amount of output
608 -verbose Produce copious amounts of output
609 -debug Produce even more output which will mean nothing to most
610 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
611 -clean Do "make CLEAN" after compiling and testing.
612 -cleanup Aggresively removes all model output, executables and object files
613 and then exits. Use with care.
614
615 Normal usage:
616 $0 * Configure, compile, run and analyze in all experiment directories
617 EOF
618 }
619
620 scandirs()
621 {
622 if [ $# -eq 0 ]; then
623 for arg in * ; do
624 test -d $arg/input && echo $arg
625 done
626 else
627 echo $*
628 fi
629 }
630
631
632 ###############################################################################
633
634
635 # Default properties
636 debug=0
637 verbose=1
638 clean=0
639 expts=''
640 # ieee=1
641
642 IEEE=true
643 if test "x$MITGCM_IEEE" != x ; then
644 IEEE=$MITGCM_IEEE
645 fi
646
647
648 CLEANUP=f
649 QUICK=f
650 NOGENMAKE=f
651 NOCLEAN=f
652 NODEPEND=f
653 POSTCLEAN=f
654
655 BASH=
656 OPTFILE=NONE
657 ADDRESSES=
658 TESTDIRS=
659 MPACKDIR="../tools/mpack-1.6"
660 HAVE_MPACK=
661 MPACK="$MPACKDIR/mpack"
662 COMMAND=
663 if test "x$MAKE" = x ; then
664 MAKE=make
665 fi
666 if test "x$CC" = x ; then
667 CC=cc
668 fi
669 JOBS=
670 MPI=f
671 DELDIR=
672
673 ADM=
674
675 # Additional monitor types
676 PTRACERS_NUM="1 2 3 4 5"
677
678 printf "parsing options... "
679
680 ac_prev=
681 for ac_option ; do
682
683 # If the previous option needs an argument, assign it.
684 if test -n "$ac_prev"; then
685 eval "$ac_prev=\$ac_option"
686 ac_prev=
687 continue
688 fi
689
690 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
691
692 case $ac_option in
693
694 -help | --help | -h | --h)
695 usage ;;
696
697 -optfile | --optfile | -of | --of)
698 ac_prev=OPTFILE ;;
699 -optfile=* | --optfile=* | -of=* | --of=*)
700 OPTFILE=$ac_optarg ;;
701
702 -addr | --addr | -a | --a)
703 ac_prev=ADDRESSES ;;
704 -addr=* | --addr=*)
705 ADDRESSES=$ac_optarg ;;
706
707 -tdir | --tdir | -t | --t)
708 ac_prev=TESTDIRS ;;
709 -tdir=* | --tdir=*)
710 TESTDIRS=$ac_optarg ;;
711
712 -bash | --bash | -b | --b)
713 ac_prev=BASH ;;
714 -bash=* | --bash=*)
715 BASH=$ac_optarg ;;
716
717 -command | --command | -c | --c)
718 ac_prev=COMMAND ;;
719 -command=* | --command=*)
720 COMMAND=$ac_optarg ;;
721
722 -make | --make | -m | --m)
723 ac_prev=MAKE ;;
724 -make=* | --make=*)
725 MAKE=$ac_optarg ;;
726
727 -ptracers | --ptracers | -ptr | --ptr)
728 ac_prev=PTRACERS_NUM ;;
729 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
730 PTRACERS_NUM=$ac_optarg ;;
731
732 -j) ac_prev=JOBS ;;
733 -j=*) JOBS=$ac_optarg ;;
734
735 -clean | --clean)
736 CLEANUP=t ; DELDIR=t ;;
737
738 -quick | --quick | -q | --q)
739 QUICK=t ;;
740 -nogenmake | --nogenmake | -ng | --ng)
741 NOGENMAKE=t ;;
742 -noclean | --noclean | -nc | --nc)
743 NOCLEAN=t ;;
744 -nodepend | --nodepend | -nd | --nd)
745 NODEPEND=t ;;
746
747 -postclean | --postclean | -pc | --pc)
748 POSTCLEAN=t ;;
749
750 -mpi) MPI=t ;;
751
752 -adm | -ad) ADM=t ;;
753
754 -ieee) IEEE=true ;;
755 -noieee) IEEE= ;;
756
757 -verbose) verbose=2 ;;
758 -debug) debug=1 ;;
759 -quiet) verbose=0 ;;
760
761 -deldir | -dd) DELDIR=t ;;
762
763 -*)
764 echo "Error: unrecognized option: "$ac_option
765 usage
766 ;;
767
768 *)
769 echo "Error: unrecognized argument: "$ac_option
770 usage
771 ;;
772
773 esac
774
775 done
776
777 if test "x$QUICK" = xt ; then
778 NOGENMAKE=t
779 NOCLEAN=t
780 NODEPEND=t
781 fi
782
783 if test "x$TESTDIRS" = x ; then
784 TESTDIRS=`scandirs`
785 fi
786
787 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
788 OPTFILE=$MITGCM_OF
789 fi
790
791 if test "x$ADM" = xt -a "x$COMMAND" = x ; then
792 COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1"
793 fi
794
795 if test "x$COMMAND" = x ; then
796 COMMAND="$MAKE output.txt"
797 fi
798
799 echo "OK"
800
801 # create the FORTRAN comparison code
802 createcodelet
803
804 # build the mpack utility
805 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
806 echo "skipping mpack build"
807 else
808 build_mpack
809 fi
810
811 # Create a uniquely named directory to store results
812 MACH=`hostname`
813 UNAMEA=`uname -a`
814 DATE=`date +%Y%m%d`
815 BASE="tr_"$MACH"_"$DATE"_"
816 DNUM=0
817 DRESULTS="$BASE$DNUM"
818 while test -e $DRESULTS ; do
819 DNUM=$(( $DNUM + 1 ))
820 DRESULTS="$BASE$DNUM"
821 done
822 mkdir $DRESULTS
823 RETVAL=$?
824 if test "x$RETVAL" != x0 ; then
825 echo "ERROR: Can't create results directory \"./$DRESULTS\""
826 exit 1
827 fi
828 SUMMARY="$DRESULTS/summary.txt"
829 printf "Start time: " >> $SUMMARY
830 start_date=`date`
831 echo $start_date > $SUMMARY
832
833 of_path=
834 if test "x$OPTFILE" != xNONE ; then
835 if test -r $OPTFILE ; then
836 # get the path
837 path=${OPTFILE%/*}
838 if test "x$path" = x ; then
839 of_path=`pwd`
840 else
841 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
842 fi
843 file=${OPTFILE##*/}
844 OPTFILE=$of_path/$file
845 cp $OPTFILE $DRESULTS
846 echo >> $SUMMARY
847 echo " OPTFILE=$OPTFILE" >> $SUMMARY
848 else
849 echo | tee $SUMMARY
850 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
851 exit 1
852 fi
853 else
854 echo >> $SUMMARY
855 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
856 echo " so the genmake default will be used." >> $SUMMARY
857 fi
858 echo
859 echo >> $SUMMARY
860 if test "x$ADM" = x ; then
861 line_0=" ----T----- ----S----- ----U----- ----V-----"
862 line_1="G D M c m s m s m s m s"
863 line_2="E p a R g m m e . m m e . m m e . m m e ."
864 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
865 line_4="2 d e n d n x n . n x n . n x n . n x n ."
866 for ii in $PTRACERS_NUM ; do
867 # tst=`eval 'echo $HAVE_PTR0'$ii`
868 # if test "x$tst" = xt ; then
869 line_0="$line_0 --PTR 0"$ii"--"
870 line_1="$line_1 m s"
871 line_2="$line_2 m m e ."
872 line_3="$line_3 i a a d"
873 line_4="$line_4 n x n ."
874 # fi
875 done
876 echo "$line_0" | tee -a $SUMMARY
877 echo "$line_1" | tee -a $SUMMARY
878 echo "$line_2" | tee -a $SUMMARY
879 echo "$line_3" | tee -a $SUMMARY
880 echo "$line_4" | tee -a $SUMMARY
881 echo " " | tee -a $SUMMARY
882 else
883 echo "ADJOINT=true" >> $SUMMARY
884 echo >> $SUMMARY
885 cat << EOF | tee -a $SUMMARY
886 G D M C G
887 E p a R o r
888 N n k u s a
889 2 d e n t d
890
891 EOF
892 fi
893
894 # ...and each test directory...
895 for dir in $TESTDIRS ; do
896
897 # Cleanup only!
898 if test "x$CLEANUP" = xt ; then
899 if test -r $dir/build/Makefile ; then
900 ( cd $dir/build ; make CLEAN )
901 fi
902 if test -r $dir/input/Makefile ; then
903 ( cd $dir/input ; make CLEAN )
904 fi
905 (
906 cd $dir
907 rm -rf tr_run.*
908 )
909 continue
910 fi
911
912 # Verify that the testdir exists and contains previous
913 # results in the correct location--or skip this directory!
914 fout=
915 if test "x$ADM" = x ; then
916 fout=$dir"/results/output.txt"
917 else
918 fout=$dir"/results_ad/output.txt_adm"
919 fi
920 if test ! -r $fout ; then
921 echo "can't read \"$fout\" -- skipping $dir"
922 continue
923 fi
924 if test "x$ADM" = x ; then
925 check_for_add_mon_output $fout
926 fi
927
928 # Check for additional types of monitor output
929
930 builddir="input"
931 rundir="input"
932 use_seperate_build=0
933 if test -d $dir/build -a -r $dir/build ; then
934 builddir="build"
935 rundir="build"
936 use_seperate_build=1
937 linkdata $use_seperate_build $dir/$rundir
938 fi
939
940 # Check whether there are "extra runs" for this testdir
941 extra_runs=
942 if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then
943 ex_run_dirs=`( cd $dir ; echo input.* )`
944 echo "ex_run_dirs='$ex_run_dirs'"
945 for exd in $ex_run_dirs ; do
946 name=`echo $exd | sed -e 's/input.//g'`
947 outf="$dir/results/output.txt.$name"
948 if test -f $outf -a -r $outf ; then
949 extra_runs="$extra_runs $name"
950 fi
951 done
952 fi
953
954 if test "x$ADM" = x ; then
955 code_dir=code
956 CODE_DIR=$dir/code
957 else
958 code_dir=code_ad
959 CODE_DIR=$dir/code_ad
960 fi
961 BUILD_DIR=$dir/$builddir
962
963 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
964 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
965 continue
966 fi
967
968 echo "-------------------------------------------------------------------------------"
969 echo
970 echo "Experiment: $dir"
971 echo
972 unset genmake makedepend make run
973 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
974
975 # Create an output dir for each OPTFILE/tdir combination
976 rel_CDIR=$DRESULTS"/"$dir
977 mkdir $rel_CDIR
978 CDIR=`pwd`"/$rel_CDIR"
979
980 if test "x$CLEANUP" = xt ; then
981 makeclean $dir/$builddir
982 else
983 genmakemodel $dir/$builddir && genmake=Y \
984 && makeclean $dir/$builddir \
985 && symlink_mpifiles $dir $code_dir $builddir \
986 && makedependmodel $dir/$builddir && makedepend=Y \
987 && makemodel $dir/$builddir && make=Y \
988 && linkdata $use_seperate_build $dir/$rundir \
989 && runmodel $dir/$rundir && run=Y \
990 && results=`testoutput $dir $rundir`
991 fi
992
993 echo
994 if test "x$ADM" = x ; then
995 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
996 echo
997 echo "$fres" >> $SUMMARY
998 echo "fresults='$fres'" > $CDIR"/summary.txt"
999 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1000 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1001 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1002 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1003
1004 for ex in $extra_runs ; do
1005 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1006 for ldir in input.$ex input ; do
1007 (
1008 cd "$dir/$ldir" > /dev/null 2>&1
1009 ls -1 2>/dev/null \
1010 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1011 ) > tr_exrun_links
1012 (
1013 cd "$dir/tr_run.$ex"
1014 cat ../../tr_exrun_links | while read i ; do
1015 if test ! "x$i" = x ; then
1016 test ! -r $i && ln -s "../"$ldir"/"$i $i
1017 fi
1018 done
1019 )
1020 test -e tr_exrun_links && rm -f tr_exrun_links
1021 done
1022 ldir=build
1023 (
1024 cd "$dir/$ldir" > /dev/null 2>&1
1025 ls -1 Makefile *.[fFhco] mitgcmuv 2>/dev/null \
1026 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1027 ) > tr_exrun_links
1028 (
1029 cd "$dir/tr_run.$ex"
1030 cat ../../tr_exrun_links | while read i ; do
1031 if test ! "x$i" = x ; then
1032 test ! -r $i && ln -s "../"$ldir"/"$i $i
1033 fi
1034 done
1035 )
1036 test -e tr_exrun_links && rm -f tr_exrun_links
1037 runmodel $dir/tr_run.$ex && run=Y \
1038 && results=`testoutput $dir tr_run.$ex "."$ex`
1039 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1040 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1041 fres="$fres.$ex"
1042 echo
1043 echo "$fres" >> $SUMMARY
1044 echo "fresults='$fres'" > $CDIR"/summary.txt"
1045 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1046 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1047 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1048 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1049 done
1050 else
1051 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1052 fres=$fres"$results $dir"
1053 echo
1054 echo "$fres" >> $SUMMARY
1055 echo "fresults='$fres'" > $CDIR"/summary.txt"
1056 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1057 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1058 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1059 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1060 fi
1061
1062 postclean $dir/$builddir
1063
1064 echo "-------------------------------------------------------------------------------"
1065
1066 done
1067
1068 printf "Start time: " >> $SUMMARY
1069 echo $start_date >> $SUMMARY
1070 printf "End time: " >> $SUMMARY
1071 date >> $SUMMARY
1072
1073 # If addresses were supplied and mpack built successfully, then try
1074 # to send email using mpack.
1075 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1076 echo "No results email was sent."
1077 else
1078 if test "x$HAVE_MPACK" = xt ; then
1079 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1080 && gzip $DRESULTS".tar" \
1081 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1082 RETVAL=$?
1083 if test "x$RETVAL" != x0 ; then
1084 echo
1085 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1086 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1087 echo " summary of results from the directory \"$DRESULTS\"."
1088 echo
1089 else
1090 echo
1091 echo "An email containing results was sent to the following addresses:"
1092 echo " \"$ADDRESSES\""
1093 echo
1094 fi
1095 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1096 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1097 fi
1098 fi
1099
1100 # rm -f tmp_cmpnum.f a.out
1101 rm -f tmp_cmpnum.c tmp_cmpnum
1102
1103 if test "x$CLEANUP" != xt ; then
1104 cat $SUMMARY | sed 's/ -- -- -- --//g'
1105 if test -e tr_out.txt ; then
1106 mv tr_out.txt tr_out.txt.old
1107 fi
1108 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1109 fi
1110
1111 if test "x$DELDIR" = xt ; then
1112 rm -rf $DRESULTS
1113 fi

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