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Revision 1.66 - (show annotations) (download)
Fri Feb 4 16:41:42 2005 UTC (19 years, 1 month ago) by edhill
Branch: MAIN
Changes since 1.65: +4 -1 lines
 o make sure the "-mpi" flag gets passed on to genmake2

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.65 2005/02/04 14:43:20 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mpi) use MPI input files"
15 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
16 echo " (DEF=\"-ieee\")"
17 echo " (-optfile=|-of=)STRING list of optfiles to use"
18 echo " (-a|-addr) STRING list of email recipients"
19 echo " (DEF=\"edhill@mitgcm.org\")"
20 echo " (-t|-tdir) STRING list of test dirs to use"
21 echo " (DEF=\"\" which builds all)"
22 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
23 echo " Bourne-compatible \"sh\" shell"
24 echo " (DEF=\"\" for \"bash\")"
25 echo " (-adm|-ad) perform an adjoint run"
26 echo " (-command) STRING command to run"
27 echo " (DEF=\"make output.txt\")"
28 echo " (-m|-make) STRING command to use for \"make\""
29 echo " (DEF=\"make\")"
30 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
31 echo " (DEF=\"1 2 3 4 5\")"
32 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
33 echo " (-clean) *ONLY* run \"make CLEAN\""
34 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
35 echo " (-nogenmake|-ng) skip the genmake stage"
36 echo " (-noclean|-nc) skip the \"make clean\" stage"
37 echo " (-nodepend|-nd) skip the \"make depend\" stage"
38 echo " (-deldir|-dd) on success, delete the output directory"
39 echo
40 echo "and where STRING can be a whitespace-delimited list"
41 echo "such as:"
42 echo
43 echo " -t 'exp0 exp2 exp3' "
44 echo " -addr='abc@123.com testing@home.org'"
45 echo
46 echo "provided that the expression is properly quoted within the current"
47 echo "shell (note the use of single quotes to protect white space)."
48 echo
49 exit 1
50 }
51
52 # build the mpack utility
53 build_mpack()
54 {
55 printf "building the mpack utility... "
56 if test ! -x "$MPACKDIR/mpack" ; then
57 if test ! -d $MPACKDIR ; then
58 echo
59 echo "Error: can't find \"$MPACKDIR\""
60 echo " are you sure this program is being run in the correct "
61 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
62 echo
63 HAVE_MPACK=f
64 fi
65 printf "building mpack... "
66 if test "x$CC" = x ; then
67 export CC=cc
68 fi
69 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
70 RETVAL=$?
71 if test "x$RETVAL" != x0 ; then
72 echo
73 echo "Error building the mpack tools at: $MPACK_DIR"
74 echo
75 HAVE_MPACK=f
76 else
77 rm -f tr_build_mpack.out
78 HAVE_MPACK=t
79 fi
80 else
81 HAVE_MPACK=t
82 fi
83 echo "OK"
84 }
85
86 testoutput_for_prop()
87 {
88 # testoutput_for_prop dir s1 label subdir extension
89 #
90 # compares files in $dir/$subdir/output.txt and $dir/results/output.txt
91 # using search strings s1 and text label
92
93 if [ $debug -gt 0 ]; then
94 echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
95 fi
96 if [ -r $1/$4/output.txt ]; then
97 grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
98 lncnt=`wc -l tmp1.txt | awk '{print $1}' `
99 if [ $lncnt -lt 3 ]; then
100 if [ $verbose -gt 0 ]; then
101 echo Not enough lines of output when searching for "$2" 1>&2
102 fi
103 return 99
104 fi
105 else
106 echo testoutput_for_prop: output.txt from model run was not readable 1>&2
107 return 99
108 fi
109 if [ $debug -gt 0 ]; then
110 echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2
111 fi
112 grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt
113 lncnt=`wc -l tmp2.txt | awk '{print $1}' `
114 if [ $lncnt -lt 3 ]; then
115 if [ $verbose -gt 0 ]; then
116 echo Not enough lines of output when searching for "$2" 1>&2
117 fi
118 return 99
119 fi
120 if [ $debug -gt 0 ]; then
121 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
122 fi
123 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
124 if [ $debug -gt 0 ]; then
125 echo testoutput_for_prop: compare_lines 1>&2
126 fi
127 if [ $verbose -gt 1 ]; then
128 cat tmp3.txt 1>&2
129 fi
130 echo "-1" >> tmp3.txt
131 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
132 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
133 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
134 if [ $digits_of_similarity -eq 99 ]; then
135 if [ $verbose -gt 0 ]; then
136 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
137 fi
138 digits_of_similarity=99
139 else
140 if [ $verbose -gt 0 ]; then
141 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
142 fi
143 fi
144 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
145
146 return $digits_of_similarity
147 }
148
149 dashnum()
150 {
151 # dashnum n1 n2 n3 ...
152 #
153 # print numbers using %3i format or "--" if number = 99
154
155 for num in $@ ; do
156 if [ $num = 99 ]; then
157 printf ' --'
158 else
159 printf '%3i' $num
160 fi
161 done
162 }
163
164 testoutput_ad()
165 {
166 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt
167 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt
168 grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt
169 grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt
170 join t05.txt t15.txt > t5.txt
171 join t06.txt t16.txt > t6.txt
172 echo "-1" >> t5.txt
173 echo "-1" >> t6.txt
174 digits_5=`./tmp_cmpnum < t5.txt`
175 digits_6=`./tmp_cmpnum < t6.txt`
176 dashnum $digits_5 $digits_6
177 rm -f t[01][56].txt t[56].txt
178 }
179
180 check_for_add_mon_output()
181 {
182 # Check for additional types of monitor output
183 if test "x$1" = x ; then
184 return
185 fi
186
187 for ii in $PTRACERS_NUM ; do
188 eval "HAVE_PTR0"$ii"=f"
189 done
190
191 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
192 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
193 for ii in $PTRACERS_NUM ; do
194 for jj in $ptr_add ; do
195 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
196 tst=`grep $name $1 | wc -l | awk '{print $1}'`
197 if test ! "x$tst" = x0 ; then
198 eval "HAVE_PTR0"$ii"=t"
199 fi
200 done
201 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
202 done
203 }
204
205 testoutput()
206 {
207 # testoutput directory subdir extension
208 #
209 # test output in "directory"
210 if test "x$ADM" = x ; then
211 if [ $debug -gt 0 ]; then
212 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
213 fi
214 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
215 if [ $debug -gt 0 ]; then
216 echo testoutput: cg2dres=$cg2dres 1>&2
217 fi
218 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
219 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
220 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
221 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
222 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
223 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
224 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
225 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
226 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
227 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
228 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
229 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
230 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
231 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
232 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
233 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
234
235 # This is for PTRACERS
236 for ii in $PTRACERS_NUM ; do
237 eval `echo "p0"$ii"_min=99"`
238 eval `echo "p0"$ii"_max=99"`
239 eval `echo "p0"$ii"_mean=99"`
240 eval `echo "p0"$ii"_sd=99"`
241 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
242 #echo 'tst = '$tst
243 if test "x$tst" = xt ; then
244 a="trcstat_ptracer0"
245 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
246 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
247 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
248 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
249 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
250 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
251 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
252 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
253 fi
254 done
255
256 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
257 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
258 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
259 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
260 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
261 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
262 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
263
264 eval "dashnum $allargs"
265
266 else
267 testoutput_ad $1 $2 "precision_grdchk_result"
268 fi
269 }
270
271 genmakemodel()
272 {
273 # genmakemodel directory
274 if test "x$NOGENMAKE" = xt ; then
275 echo "genmake skipped!"
276 else
277 if test "x$BASH" = x ; then
278 GENMAKE2="../../../tools/genmake2"
279 else
280 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
281 fi
282 (
283 cd $1;
284 command="$GENMAKE2 -ds -m $MAKE"
285 if test "x$ADM" = x ; then
286 command="$command --mods=../code"
287 else
288 command="$command --mods=../code_ad"
289 command="$command -adof=../../../tools/adjoint_options/adjoint_staf"
290 fi
291 if test "x$OPTFILE" != xNONE ; then
292 command="$command --optfile=$OPTFILE"
293 fi
294 if test "x$IEEE" != x ; then
295 command="$command -ieee"
296 fi
297 if test "x$MPI" = xt ; then
298 command="$command -mpi"
299 fi
300 printf 'genmake ... ' 1>&2
301 $command > make.log 2>&1
302 RETVAL=$?
303 # Reduce the size of the testing emails!
304 head -100 Makefile > $CDIR/Makefile_head
305 if test "x$RETVAL" != x0 ; then
306 tail make.log
307 echo "genmakemodel: genmake failed" 1>&2
308 cp genmake_* make.log $CDIR
309 return 1
310 else
311 echo "successful" 1>&2
312 fi
313 )
314 fi
315 }
316
317 makeclean()
318 {
319 # makeclean directory
320 if test "x$NOCLEAN" = xt ; then
321 echo "make CLEAN skipped!"
322 else
323 (
324 cd $1;
325 if test -e output.txt ; then
326 rm -f output.txt
327 fi
328 printf 'make CLEAN ... ' 2>&1
329 if test -r Makefile ; then
330 $MAKE CLEAN >> make.log 2>&1
331 RETVAL=$?
332 if test "x$RETVAL" != x0 ; then
333 tail make.log
334 echo "makeclean: \"make CLEAN\" failed" 1>&2
335 cp make.log $CDIR"/make.log"
336 return 1
337 fi
338 fi
339 echo successful 1>&2
340 exit 0
341 )
342 fi
343 }
344
345 makedependmodel()
346 {
347 # makedependmodel directory
348 if test "x$NODEPEND" = xt ; then
349 echo "make depend skipped!"
350 else
351 (
352 cd $1;
353 printf 'make depend ... ' 1>&2
354 $MAKE depend >> make.log 2>&1
355 RETVAL=$?
356 if test "x$RETVAL" != x0 ; then
357 tail make.log
358 echo "makedependmodel: make depend failed" 1>&2
359 cp make.log $CDIR"/make.log"
360 return 1
361 else
362 echo successful 1>&2
363 fi
364 )
365 fi
366 }
367
368 makemodel()
369 {
370 # makemodel directory
371 (
372 cd $1;
373 if test -r Makefile ; then
374 printf 'make ... ' 1>&2
375 if test "x$ADM" = x ; then
376 if test "x$JOBS" = x ; then
377 $MAKE >> make.log 2>&1
378 else
379 $MAKE -j $JOBS >> make.log 2>&1
380 fi
381 else
382 $MAKE adall >> make.log 2>&1
383 fi
384 RETVAL=$?
385 if test "x$RETVAL" != x0 ; then
386 tail make.log
387 echo failed 1>&2
388 cp make.log $CDIR"/make.log"
389 return 1
390 else
391 echo successful 1>&2
392 fi
393 fi
394 )
395 }
396
397 symlink_mpifiles()
398 {
399 # Put special links so that MPI specific files are used
400 # This MUST be invoked between makeclean and makelinks because
401 # the Makefile will link to non-mpi files by default
402
403 dir=$1
404 code_dir=$2
405 BUILD_DIR=$dir/$3
406 CODE_DIR=$dir/$code_dir
407
408 # These are files that should replace their counter-part when using -mpi
409 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
410
411 # Is this an MPI run?
412 if test "x$MPI" = xt ; then
413 # YES: We symbolically link these files to the build
414 # dir so long as there is no real file in place
415 for ii in $MPI_FILES ; do
416 i=`echo $ii | sed 's:^\./::'`
417 name=`echo $i | sed 's:_mpi::' `
418 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
419 RETVAL=$?
420 if test "x$RETVAL" != x0 ; then
421 if ! test -f $BUILD_DIR/$i ; then
422 #echo Linking $name to $i
423 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
424 fi
425 fi
426 done
427 else
428 # NO: We undo any _mpi symbolically linked files
429 for ii in $MPI_FILES ; do
430 i=`echo $ii | sed 's:^\./::'`
431 name=`echo $i | sed 's:_mpi::' `
432 if test -L $BUILD_DIR/$name ; then
433 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
434 RETVAL=$?
435 if test "x$RETVAL" = x0 ; then
436 #echo Un-linking $name from $linktarg
437 rm -f $BUILD_DIR/$name
438 fi
439 fi
440 done
441 fi
442
443 }
444
445 linkdata()
446 {
447 # linkdata flag
448 #
449 # symbolically link data files to run directory
450 if test "x$1" = x1 ; then
451 (
452 cd $2
453 if test "x$ADM" = x ; then
454 files=`( cd ../input ; ls -1 | grep -v CVS )`
455 for i in $files ; do
456 if test ! -d "../input/"$i -a ! -f $i ; then
457 ln -sf "../input/"$i $i
458 fi
459 done
460 else
461 files=`( cd ../input ; ls -1 *.bin | grep -v CVS )`
462 for i in $files ; do
463 if test ! -d "../input/"$i ; then
464 ln -sf "../input/"$i $i
465 fi
466 done
467 files=`( cd ../input_ad ; ls -1 | grep -v CVS )`
468 for i in $files ; do
469 if test ! -d "../input_ad/"$i ; then
470 ln -sf "../input_ad/"$i $i
471 fi
472 done
473 fi
474 )
475 fi
476 }
477
478 runmodel()
479 {
480 # runmodel directory
481 #
482 # runs "$COMMAND in "directory"
483 # (where "$COMMAND" is relative to "directory")
484 (
485 cd $1
486 printf 'runmodel ... ' 1>&2
487 # make output.txt
488 echo
489 rm -f run.log
490 # echo "COMMAND='$COMMAND'"
491 # echo "pwd='"`pwd`"'"
492 ( eval $COMMAND ) > run.log 2>&1
493 RETVAL=$?
494 if test "x$RETVAL" = x0 ; then
495 tail run.log
496 echo successful 1>&2
497 # === Reduce the size of the testing emails!
498 # if test "x$ADM" = x ; then
499 # cp output.txt $CDIR"/output.txt"
500 # else
501 # cp output.txt_adm $CDIR"/output.txt_adm"
502 # fi
503 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
504 return 0
505 else
506 tail run.log
507 echo failed 1>&2
508 cp run.log $CDIR"/run.log"
509 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
510 return 1
511 fi
512 )
513 }
514
515 createcodelet()
516 {
517 # create codelet for comparing model output
518
519 printf "creating the comparison code... "
520 cat > tmp_cmpnum.c <<EOF
521 #include <stdio.h>
522 #include <math.h>
523 int main( int argc, char** argv ) {
524 int linnum,best,lncnt;
525 double a,b,abave,relerr;
526 best = -22;
527 lncnt = 0;
528 while( 1 & (lncnt+=1) < 999 ) {
529 scanf("%d", &linnum);
530 if (linnum == -1) break;
531 scanf("%lf", &a); scanf("%lf", &b);
532 abave = 0.5*(fabs(a)+fabs(b));
533 if (abave > 0.0) {
534 relerr=fabs(a-b)/abave;
535 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
536 else { linnum = -16 ; }
537 best = (best > linnum) ? best : linnum;
538 }
539 }
540 if (lncnt == 999) best=-29;
541 printf("%d\n", -best);
542 return 0;
543 }
544 EOF
545 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
546
547 if [ -x ./tmp_cmpnum ]; then
548 echo "OK"
549 return 0
550 else
551 echo
552 echo "ERROR: failed to compile comparison code -- please specify"
553 echo " a C compiler using the CC environment variable."
554 exit 1
555 fi
556 }
557
558 formatresults()
559 {
560 # formatresults expt genmake depend make run results*
561
562 nm=$1
563 printf '%s %s %s %s' $2 $3 $4 $5
564 shift; shift; shift; shift; shift;
565 printf '%3s' $@
566
567 if [ $1 = '--' ]; then
568 printf ' N/O '
569 else
570 if [ $1 -gt 12 ]; then
571 printf ' pass'
572 else
573 printf ' FAIL'
574 fi
575 fi
576 printf ' %s' $nm
577 printf '\n'
578
579 }
580
581 show_help()
582 {
583 cat - << EOF
584 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
585
586 -help|-h Show this help message
587 -quiet Reduce the amount of output
588 -verbose Produce copious amounts of output
589 -debug Produce even more output which will mean nothing to most
590 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
591 -clean Do "make CLEAN" after compiling and testing.
592 -cleanup Aggresively removes all model output, executables and object files
593 and then exits. Use with care.
594
595 Normal usage:
596 $0 * Configure, compile, run and analyze in all experiment directories
597 EOF
598 }
599
600 scandirs()
601 {
602 if [ $# -eq 0 ]; then
603 for arg in * ; do
604 test -d $arg/input && echo $arg
605 done
606 else
607 echo $*
608 fi
609 }
610
611
612 ###############################################################################
613
614
615 # Default properties
616 debug=0
617 verbose=1
618 clean=0
619 expts=''
620 # ieee=1
621
622 IEEE=true
623 if test "x$MITGCM_IEEE" != x ; then
624 IEEE=$MITGCM_IEEE
625 fi
626
627
628 CLEANUP=f
629 QUICK=f
630 NOGENMAKE=f
631 NOCLEAN=f
632 NODEPEND=f
633
634 BASH=
635 OPTFILE=NONE
636 ADDRESSES=
637 TESTDIRS=
638 MPACKDIR="../tools/mpack-1.6"
639 HAVE_MPACK=
640 MPACK="$MPACKDIR/mpack"
641 COMMAND=
642 if test "x$MAKE" = x ; then
643 MAKE=make
644 fi
645 if test "x$CC" = x ; then
646 CC=cc
647 fi
648 JOBS=
649 MPI=f
650 DELDIR=
651
652 ADM=
653
654 # Additional monitor types
655 PTRACERS_NUM="1 2 3 4 5"
656
657 printf "parsing options... "
658
659 ac_prev=
660 for ac_option ; do
661
662 # If the previous option needs an argument, assign it.
663 if test -n "$ac_prev"; then
664 eval "$ac_prev=\$ac_option"
665 ac_prev=
666 continue
667 fi
668
669 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
670
671 case $ac_option in
672
673 -help | --help | -h | --h)
674 usage ;;
675
676 -optfile | --optfile | -of | --of)
677 ac_prev=OPTFILE ;;
678 -optfile=* | --optfile=* | -of=* | --of=*)
679 OPTFILE=$ac_optarg ;;
680
681 -addr | --addr | -a | --a)
682 ac_prev=ADDRESSES ;;
683 -addr=* | --addr=*)
684 ADDRESSES=$ac_optarg ;;
685
686 -tdir | --tdir | -t | --t)
687 ac_prev=TESTDIRS ;;
688 -tdir=* | --tdir=*)
689 TESTDIRS=$ac_optarg ;;
690
691 -bash | --bash | -b | --b)
692 ac_prev=BASH ;;
693 -bash=* | --bash=*)
694 BASH=$ac_optarg ;;
695
696 -command | --command | -c | --c)
697 ac_prev=COMMAND ;;
698 -command=* | --command=*)
699 COMMAND=$ac_optarg ;;
700
701 -make | --make | -m | --m)
702 ac_prev=MAKE ;;
703 -make=* | --make=*)
704 MAKE=$ac_optarg ;;
705
706 -ptracers | --ptracers | -ptr | --ptr)
707 ac_prev=PTRACERS_NUM ;;
708 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
709 PTRACERS_NUM=$ac_optarg ;;
710
711 -j) ac_prev=JOBS ;;
712 -j=*) JOBS=$ac_optarg ;;
713
714 -clean | --clean)
715 CLEANUP=t ;;
716
717 -quick | --quick | -q | --q)
718 QUICK=t ;;
719 -nogenmake | --nogenmake | -ng | --ng)
720 NOGENMAKE=t ;;
721 -noclean | --noclean | -nc | --nc)
722 NOCLEAN=t ;;
723 -nodepend | --nodepend | -nd | --nd)
724 NODEPEND=t ;;
725
726 -mpi) MPI=t ;;
727
728 -adm | -ad) ADM=t ;;
729
730 -ieee) IEEE=true ;;
731 -noieee) IEEE= ;;
732
733 -verbose) verbose=2 ;;
734 -debug) debug=1 ;;
735 -quiet) verbose=0 ;;
736
737 -deldir | -dd) DELDIR=t ;;
738
739 -*)
740 echo "Error: unrecognized option: "$ac_option
741 usage
742 ;;
743
744 *)
745 echo "Error: unrecognized argument: "$ac_option
746 usage
747 ;;
748
749 esac
750
751 done
752
753 if test "x$QUICK" = xt ; then
754 NOGENMAKE=t
755 NOCLEAN=t
756 NODEPEND=t
757 fi
758
759 if test "x$TESTDIRS" = x ; then
760 TESTDIRS=`scandirs`
761 fi
762
763 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
764 OPTFILE=$MITGCM_OF
765 fi
766
767 if test "x$ADM" = xt -a "x$COMMAND" = x ; then
768 COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1"
769 fi
770
771 if test "x$COMMAND" = x ; then
772 COMMAND="$MAKE output.txt"
773 fi
774
775 echo "OK"
776
777 # create the FORTRAN comparison code
778 createcodelet
779
780 # build the mpack utility
781 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
782 echo "skipping mpack build"
783 else
784 build_mpack
785 fi
786
787 # Create a uniquely named directory to store results
788 MACH=`hostname`
789 UNAMEA=`uname -a`
790 DATE=`date +%Y%m%d`
791 BASE="tr_"$MACH"_"$DATE"_"
792 DNUM=0
793 DRESULTS="$BASE$DNUM"
794 while test -e $DRESULTS ; do
795 DNUM=$(( $DNUM + 1 ))
796 DRESULTS="$BASE$DNUM"
797 done
798 mkdir $DRESULTS
799 RETVAL=$?
800 if test "x$RETVAL" != x0 ; then
801 echo "ERROR: Can't create results directory \"./$DRESULTS\""
802 exit 1
803 fi
804 SUMMARY="$DRESULTS/summary.txt"
805 printf "Start time: " >> $SUMMARY
806 start_date=`date`
807 echo $start_date > $SUMMARY
808
809 of_path=
810 if test "x$OPTFILE" != xNONE ; then
811 if test -r $OPTFILE ; then
812 # get the path
813 path=${OPTFILE%/*}
814 if test "x$path" = x ; then
815 of_path=`pwd`
816 else
817 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
818 fi
819 file=${OPTFILE##*/}
820 OPTFILE=$of_path/$file
821 cp $OPTFILE $DRESULTS
822 echo >> $SUMMARY
823 echo " OPTFILE=$OPTFILE" >> $SUMMARY
824 else
825 echo | tee $SUMMARY
826 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
827 exit 1
828 fi
829 else
830 echo >> $SUMMARY
831 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
832 echo " so the genmake default will be used." >> $SUMMARY
833 fi
834 echo
835 echo >> $SUMMARY
836 if test "x$ADM" = x ; then
837 line_0=" ----T----- ----S----- ----U----- ----V-----"
838 line_1="G D M c m s m s m s m s"
839 line_2="E p a R g m m e . m m e . m m e . m m e ."
840 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
841 line_4="2 d e n d n x n . n x n . n x n . n x n ."
842 for ii in $PTRACERS_NUM ; do
843 # tst=`eval 'echo $HAVE_PTR0'$ii`
844 # if test "x$tst" = xt ; then
845 line_0="$line_0 --PTR 0"$ii"--"
846 line_1="$line_1 m s"
847 line_2="$line_2 m m e ."
848 line_3="$line_3 i a a d"
849 line_4="$line_4 n x n ."
850 # fi
851 done
852 echo "$line_0" | tee -a $SUMMARY
853 echo "$line_1" | tee -a $SUMMARY
854 echo "$line_2" | tee -a $SUMMARY
855 echo "$line_3" | tee -a $SUMMARY
856 echo "$line_4" | tee -a $SUMMARY
857 echo " " | tee -a $SUMMARY
858 else
859 echo "ADJOINT=true" >> $SUMMARY
860 echo >> $SUMMARY
861 cat << EOF | tee -a $SUMMARY
862 G D M C G
863 E p a R o r
864 N n k u s a
865 2 d e n t d
866
867 EOF
868 fi
869
870 # ...and each test directory...
871 for dir in $TESTDIRS ; do
872
873 # Cleanup only!
874 if test "x$CLEANUP" = xt ; then
875 if test -r $dir/build/Makefile ; then
876 ( cd $dir/build ; make CLEAN )
877 fi
878 if test -r $dir/input/Makefile ; then
879 ( cd $dir/input ; make CLEAN )
880 fi
881 (
882 cd $dir
883 rm -rf tr_run.*
884 )
885 continue
886 fi
887
888 # Verify that the testdir exists and contains previous
889 # results in the correct location--or skip this directory!
890 fout=
891 if test "x$ADM" = x ; then
892 fout=$dir"/results/output.txt"
893 else
894 fout=$dir"/results_ad/output.txt_adm"
895 fi
896 if test ! -r $fout ; then
897 echo "can't read \"$fout\" -- skipping $dir"
898 continue
899 fi
900 if test "x$ADM" = x ; then
901 check_for_add_mon_output $fout
902 fi
903
904 # Check for additional types of monitor output
905
906 builddir="input"
907 rundir="input"
908 use_seperate_build=0
909 if test -d $dir/build -a -r $dir/build ; then
910 builddir="build"
911 rundir="build"
912 use_seperate_build=1
913 linkdata $use_seperate_build $dir/$rundir
914 fi
915
916 # Check whether there are "extra runs" for this testdir
917 extra_runs=
918 if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then
919 ex_run_dirs=`( cd $dir ; echo input.* )`
920 echo "ex_run_dirs='$ex_run_dirs'"
921 for exd in $ex_run_dirs ; do
922 name=`echo $exd | sed -e 's/input.//g'`
923 outf="$dir/results/output.txt.$name"
924 if test -f $outf -a -r $outf ; then
925 extra_runs="$extra_runs $name"
926 fi
927 done
928 fi
929
930 if test "x$ADM" = x ; then
931 code_dir=code
932 CODE_DIR=$dir/code
933 else
934 code_dir=code_ad
935 CODE_DIR=$dir/code_ad
936 fi
937 BUILD_DIR=$dir/$builddir
938
939 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
940 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
941 continue
942 fi
943
944 echo "-------------------------------------------------------------------------------"
945 echo
946 echo "Experiment: $dir"
947 echo
948 unset genmake makedepend make run
949 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
950
951 # Create an output dir for each OPTFILE/tdir combination
952 rel_CDIR=$DRESULTS"/"$dir
953 mkdir $rel_CDIR
954 CDIR=`pwd`"/$rel_CDIR"
955
956 if test "x$CLEANUP" = xt ; then
957 makeclean $dir/$builddir
958 else
959 genmakemodel $dir/$builddir && genmake=Y \
960 && makeclean $dir/$builddir \
961 && symlink_mpifiles $dir $code_dir $builddir \
962 && makedependmodel $dir/$builddir && makedepend=Y \
963 && makemodel $dir/$builddir && make=Y \
964 && linkdata $use_seperate_build $dir/$rundir \
965 && runmodel $dir/$rundir && run=Y \
966 && results=`testoutput $dir $rundir`
967 fi
968
969 echo
970 if test "x$ADM" = x ; then
971 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
972 echo
973 echo "$fres" >> $SUMMARY
974 echo "fresults='$fres'" > $CDIR"/summary.txt"
975 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
976 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
977 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
978 echo "tdir='$dir'" >> $CDIR"/summary.txt"
979
980 for ex in $extra_runs ; do
981 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
982 for ldir in input.$ex input ; do
983 (
984 cd "$dir/$ldir" > /dev/null 2>&1
985 ls -1 2>/dev/null \
986 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
987 ) > tr_exrun_links
988 (
989 cd "$dir/tr_run.$ex"
990 cat ../../tr_exrun_links | while read i ; do
991 if test ! "x$i" = x ; then
992 test ! -r $i && ln -s "../"$ldir"/"$i $i
993 fi
994 done
995 )
996 test -e tr_exrun_links && rm -f tr_exrun_links
997 done
998 ldir=build
999 (
1000 cd "$dir/$ldir" > /dev/null 2>&1
1001 ls -1 Makefile *.[fFhco] mitgcmuv 2>/dev/null \
1002 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1003 ) > tr_exrun_links
1004 (
1005 cd "$dir/tr_run.$ex"
1006 cat ../../tr_exrun_links | while read i ; do
1007 if test ! "x$i" = x ; then
1008 test ! -r $i && ln -s "../"$ldir"/"$i $i
1009 fi
1010 done
1011 )
1012 test -e tr_exrun_links && rm -f tr_exrun_links
1013 runmodel $dir/tr_run.$ex && run=Y \
1014 && results=`testoutput $dir tr_run.$ex "."$ex`
1015 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1016 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1017 fres="$fres.$ex"
1018 echo
1019 echo "$fres" >> $SUMMARY
1020 echo "fresults='$fres'" > $CDIR"/summary.txt"
1021 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1022 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1023 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1024 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1025 done
1026 else
1027 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1028 fres=$fres"$results $dir"
1029 echo
1030 echo "$fres" >> $SUMMARY
1031 echo "fresults='$fres'" > $CDIR"/summary.txt"
1032 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1033 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1034 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1035 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1036 fi
1037
1038 echo "-------------------------------------------------------------------------------"
1039
1040 done
1041
1042 printf "Start time: " >> $SUMMARY
1043 echo $start_date >> $SUMMARY
1044 printf "End time: " >> $SUMMARY
1045 date >> $SUMMARY
1046
1047 # If addresses were supplied and mpack built successfully, then try
1048 # to send email using mpack.
1049 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1050 echo "No results email was sent."
1051 else
1052 if test "x$HAVE_MPACK" = xt ; then
1053 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1054 && gzip $DRESULTS".tar" \
1055 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1056 RETVAL=$?
1057 if test "x$RETVAL" != x0 ; then
1058 echo
1059 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1060 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1061 echo " summary of results from the directory \"$DRESULTS\"."
1062 echo
1063 else
1064 echo
1065 echo "An email containing results was sent to the following addresses:"
1066 echo " \"$ADDRESSES\""
1067 echo
1068 fi
1069 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1070 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1071 fi
1072 fi
1073
1074 # rm -f tmp_cmpnum.f a.out
1075 rm -f tmp_cmpnum.c tmp_cmpnum
1076
1077 if test "x$CLEANUP" != xt ; then
1078 cat $SUMMARY | sed 's/ -- -- -- --//g'
1079 if test -e tr_out.txt ; then
1080 mv tr_out.txt tr_out.txt.old
1081 fi
1082 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1083 fi
1084
1085 if test "x$DELDIR" = xt ; then
1086 rm -rf $DRESULTS
1087 fi

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