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Revision 1.212 - (show annotations) (download)
Sun Mar 12 16:34:11 2017 UTC (2 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint66g, checkpoint66f, checkpoint66e, checkpoint66o, checkpoint66n, checkpoint66m, checkpoint66l, checkpoint66k, checkpoint66j, checkpoint66i, checkpoint66h, HEAD
Changes since 1.211: +6 -4 lines
alternative way (instead of mpack) to send testreport results.

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.211 2017/01/11 23:21:21 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " ---- type of test : ----"
15 echo " (-tlm) perform a Tangent Linear run"
16 echo " (-adm|-ad) perform an adjoint run"
17 echo " (-oad) perform an OpenAD adjoint run"
18 echo " (-mth) run multi-threaded (using eedata.mth)"
19 echo " (-mpi) use MPI to compile and run on 2 processors"
20 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
21 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
22 echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)"
23 echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'"
24 echo " ---- testing options : ----"
25 echo " (-optfile|-of) STRING optfile to use"
26 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
27 echo " DEF=off => use IEEE numerics option (if available)"
28 echo " (-devel) use optfile developement flags (if available)"
29 echo " (-gsl) compile with \"-gsl\" flag"
30 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
31 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
32 echo " (recognized groups: basic, tutorials)"
33 echo " (DEF=\"\" which test all)"
34 echo " (if list= 'start_from THIS_EXP' then"
35 echo " test THIS_EXP + all the following)"
36 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
37 echo " (DEF=\"\" which test all)"
38 echo " (-ts) provide timing information per timestep"
39 echo " (-papis) provide MFlop/s per timestep using PAPI"
40 echo " (-pcls) provide MFlop/s per timestep using PCL"
41 echo " ---- system options : ----"
42 echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
43 echo " (DEF=\"\" for \"bash\")"
44 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
45 echo " (-ncad) use genmake2 option \"-nocat4ad\" (-ncad)"
46 echo " (-small_f) make target small_f before making target all"
47 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
48 echo " (-make|-m) STRING command to use for \"make\""
49 echo " (DEF=\"make\")"
50 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
51 echo " ---- output options : ----"
52 echo " (-match) NUMBER Matching Criteria (number of digits)"
53 echo " (DEF=\"$MATCH_CRIT\")"
54 echo " (-odir) STRING used to build output directory name"
55 echo " (DEF=\"hostname\")"
56 echo " (-addr|-a) STRING list of email recipients"
57 echo " (DEF=\"\" no email is sent)"
58 echo " (-send) STRING sending command (instead of using mpack)"
59 echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
60 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
61 echo " (DEF=\"../tools/mpack-1.6\")"
62 echo " -- do only some parts: --"
63 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
64 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
65 echo " (-obj) only produces objects (=norun & no executable)"
66 echo " (-src) only produces small '*.f' src files (not even obj)"
67 echo " + with: '-adm/-tlm', also makes taf outp src code"
68 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
69 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
70 echo " (-nogenmake|-ng) skip the genmake stage"
71 echo " (-noclean|-nc) skip the \"make clean\" stage"
72 echo " (-nodepend|-nd) skip the \"make depend\" stage"
73 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
74 echo " (-deloutp|-do) delete output files after successful run"
75 echo " (-deldir|-dd) on success, delete the output directory"
76 echo
77 echo "and where STRING can be a whitespace-delimited list"
78 echo "such as:"
79 echo
80 echo " -t 'exp0 exp2 exp3' "
81 echo " -addr='abc@123.com testing@home.org'"
82 echo
83 echo "provided that the expression is properly quoted within the current"
84 echo "shell (note the use of single quotes to protect white space)."
85 echo
86 exit 1
87 }
88
89 # build the mpack utility
90 build_mpack()
91 {
92 printf "building the mpack utility... "
93 MPACK="$MPACKDIR/mpack"
94 if test ! -x $MPACK ; then
95 if test ! -d $MPACKDIR ; then
96 echo
97 echo "Error: can't find \"$MPACKDIR\""
98 echo " are you sure this program is being run in the correct "
99 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
100 echo
101 HAVE_MPACK=f
102 fi
103 if test "x$CC" = x ; then
104 export CC=cc
105 fi
106 printf "building mpack (using CC=$CC)... "
107 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
108 RETVAL=$?
109 if test "x$RETVAL" != x0 ; then
110 echo
111 echo "Error building the mpack tools at: $MPACK_DIR"
112 echo
113 HAVE_MPACK=f
114 else
115 rm -f tr_build_mpack.out
116 HAVE_MPACK=t
117 echo "done"
118 fi
119 else
120 HAVE_MPACK=t
121 echo "already exist"
122 fi
123 }
124
125 testoutput_var()
126 {
127 # testoutput_var dir s1 label subdir reference_output
128 #
129 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
130 # with same output from reference file $dir/$reference_output
131 # using search strings s1 and text label
132
133 if [ $debug -gt 0 ]; then
134 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
135 fi
136 if [ -r $1/$4/$OUTPUTFILE ]; then
137 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | nl > ${TMP}a.txt
138 lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
139 if [ $lncntA -lt 2 ]; then
140 if [ $verbose -gt 0 ]; then
141 echo Not enough lines of output when searching for "$2" 1>&2
142 fi
143 rm -f ${TMP}a.txt ; return 99
144 fi
145 else
146 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
147 return 99
148 fi
149 if [ $debug -gt 0 ]; then
150 echo testoutput_var: grep "$2" $1/$5 1>&2
151 fi
152 grep "$2" $1/$5 | sed 's/.*=//' | nl > ${TMP}b.txt
153 lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
154 if [ $lncntB -lt 2 ]; then
155 if [ $verbose -gt 0 ]; then
156 echo Not enough lines of output when searching for "$2" 1>&2
157 fi
158 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
159 fi
160 if [ $lncntA -ne $lncntB ]; then
161 if [ $verbose -gt 0 ]; then
162 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
163 fi
164 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
165 fi
166 has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
167 if [ $has_nan -gt 0 ] ; then
168 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
169 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
170 fi
171 has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
172 if [ $has_inf -gt 0 ] ; then
173 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
174 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
175 fi
176 if [ $debug -gt 0 ]; then
177 echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
178 fi
179 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
180 join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
181 if [ $debug -gt 0 ]; then
182 echo testoutput_var: compare_lines 1>&2
183 fi
184 if [ $verbose -gt 1 ]; then
185 cat ${TMP}c.txt 1>&2
186 fi
187 echo "-1" >> ${TMP}c.txt
188 digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
189 if [ $digits_of_similarity -eq 99 ]; then
190 if [ $verbose -gt 0 ]; then
191 echo testoutput_var: No comparison was available for \"$3\" 1>&2
192 fi
193 digits_of_similarity=99
194 else
195 if [ $verbose -gt 0 ]; then
196 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
197 fi
198 fi
199 rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
200
201 return $digits_of_similarity
202 }
203
204 testoutput_run()
205 {
206 # testoutput_run directory subdir reference_output
207 #
208 # test output from 1 run in "directory"
209 # --> same processing for adjoint & forward test
210 # default list of output variables to be checked:
211 # 1rst : main variable used to decide if it pass or FAIL
212 # others : number of matching digits to be printed in summary.txt
213 listChk=$DEF_CHECK_LIST
214 # load experiment-specific list from file "tr_checklist" (if it exist)
215 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
216 sVar=`echo $listChk | awk '{print $1}'`
217 # remove 1rst var and expand the list: + => min max mean s.d
218 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
219 | sed 's/+//g' | sed "s/^$sVar//"`
220 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
221 # set ref.outp file-name and, if compressed, uncompress it into subdir
222 refoutp=results/$3
223 if test ! -r $1/results/$3 ; then
224 if test -r $1/results/${3}.gz ; then
225 tmpNam1=$3
226 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
227 if test "x$tmpNam1" = "x$tmpNam2" ; then
228 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
229 fi
230 refoutp=$2/$tmpNam1
231 if [ $debug -gt 0 ]; then
232 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
233 fi
234 gzip -cd $1/results/${3}.gz > $1/$refoutp
235 else
236 echo "missing reference output file '$3' (.gz) in '$1/results/'"
237 fi
238 fi
239 # check for ptracer output in reference_output file :
240 if test $KIND = 0 ; then
241 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
242 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
243 for ii in $PTRACERS_NUM ; do
244 ptrfound=0
245 for jj in $ptr_mon ; do
246 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
247 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
248 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
249 done
250 if test $ptrfound = '1' ; then
251 eval "HAVE_PTR0"$ii"=t"
252 else
253 eval "HAVE_PTR0"$ii"=f"
254 # remove this ptr from the list of output variable to check
255 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
256 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
257 fi
258 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
259 done
260 fi
261 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
262 if test $tst != 1 ; then
263 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
264 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
265 echo "==> WARNING: in checked list:" $listVar 1>&2
266 #- put it back once:
267 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
268 fi
269 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
270 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
271 #---
272 allargs=""
273 for xx in $listVar
274 do
275 #ii=`echo $xx | sed 's/^pt[0-9][0-9]*..$/XXX/'` #- any ptr number
276 ii=`echo $xx | sed 's/^pt[1-9]..$/XXX/'` #- 1 to 9 ptr number
277 if test $ii != 'XXX' ; then
278 #- all except ptracer stats:
279 case $xx in
280 'PS') if [ $debug -gt 0 ]
281 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
282 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
283 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
284 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
285 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
286 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
287 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
288 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
289 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
290 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
291 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
292 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
293 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
294 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
295 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
296 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
297 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
298 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
299 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
300 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
301 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
302 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
303 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
304 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
305 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
306 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
307 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
308 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
309 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
310 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
311 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
312 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
313 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
314 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
315 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
316 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
317 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
318 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
319 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
320 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
321 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
322 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
323 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
324 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
325 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
326 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
327 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
328 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
329 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
330 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
331 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
332 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
333 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
334 'sbo_M') testoutput_var $1 "sbo_mass" "SBO mass" $2 $refoutp ; yy=$? ;;
335 'sboFW') testoutput_var $1 "sbo_mass_fw" "SBO m-FW" $2 $refoutp ; yy=$? ;;
336 'sboAc') testoutput_var $1 "sbo_zoamc" "SBO AM-C" $2 $refoutp ; yy=$? ;;
337 'sboAp') testoutput_var $1 "sbo_zoamp" "SBO AM-P" $2 $refoutp ; yy=$? ;;
338 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
339 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
340 esac
341 else
342 #- ptracers stats:
343 nn=`echo $xx | sed 's/pt//' | sed 's/..$//'`
344 ii=`echo $xx | sed 's/^pt[0-9]*//'`
345 case $ii in
346 'mn') testoutput_var $1 "trcstat_ptracer0"$nn"_min" "p0"$nn"_min" $2 $refoutp ; yy=$? ;;
347 'mx') testoutput_var $1 "trcstat_ptracer0"$nn"_max" "p0"$nn"_max" $2 $refoutp ; yy=$? ;;
348 'av') testoutput_var $1 "trcstat_ptracer0"$nn"_mean" "p0"$nn"_mean" $2 $refoutp ; yy=$? ;;
349 'sd') testoutput_var $1 "trcstat_ptracer0"$nn"_sd" "p0"$nn"_StDv" $2 $refoutp ; yy=$? ;;
350 esac
351 fi
352 if test $xx = $sVar
353 then allargs="$allargs > $yy <"
354 else allargs="$allargs $yy"
355 fi
356 done
357
358 nbVar=`echo $listVar | awk '{print NF}'`
359 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
360 #-- fill line (up to standard length) with dot:
361 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
362 echo $allargs $adNul
363 else
364 echo $allargs
365 fi
366 # <-- same processing for adjoint & forward test
367 }
368
369 genmakemodel()
370 {
371 # genmakemodel directory
372 if test "x$NOGENMAKE" = xt ; then
373 echo "genmake skipped!"
374 else
375 if test "x$BASH" = x ; then
376 GENMAKE2="../../../tools/genmake2"
377 else
378 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
379 fi
380 (
381 cd $1;
382 command="$GENMAKE2 -ds -m $MAKE"
383 if test "x$MKDEPEND" != x ; then
384 command="$command -makedepend=$MKDEPEND"
385 fi
386 if test $KIND = 4 ; then
387 command="$command -oad -mods=../$code_dir"
388 else
389 command="$command -mods=../$code_dir"
390 fi
391 if test "x$OPTFILE" != xNONE ; then
392 command="$command -optfile=$OPTFILE"
393 fi
394 if test $OptLev = 1 ; then
395 command="$command -ieee"
396 fi
397 if test $OptLev = 0 ; then
398 command="$command -devel"
399 fi
400 if test "x$GSL" = xt ; then
401 command="$command -gsl"
402 fi
403 if test "x$MPI" != x0 ; then
404 command="$command -mpi"
405 fi
406 if test "x$MULTI_THREAD" = xt ; then
407 #- run multi-threaded using OpenMP:
408 command="$command -omp"
409 fi
410 if test "x$USE_R4" = xt ; then
411 command="$command -use_r4"
412 fi
413 if test "x$EXTRFLG" != x ; then
414 command="$command -extra_flag $EXTRFLG"
415 fi
416 if test "x$NOCATAD" = xt ; then
417 command="$command -nocat4ad"
418 fi
419 if test "x$TS" = xt ; then
420 command="$command -ts"
421 fi
422 if test "x$PAPIS" = xt ; then
423 command="$command -papis"
424 else
425 if test "x$PCLS" = xt ; then
426 command="$command -pcls"
427 fi
428 fi
429 printf 'genmake ... '
430 eval $command > genmake.tr_log 2>&1
431 RETVAL=$?
432 # Reduce the size of the testing emails!
433 head -100 Makefile > $CDIR/Makefile_head
434 if test "x$RETVAL" != x0 ; then
435 tail genmake.tr_log
436 echo "genmakemodel: genmake failed"
437 cp genmake.log genmake_* genmake.tr_log $CDIR
438 return 1
439 else
440 echo "successful"
441 fi
442 )
443 fi
444 }
445
446 makeclean()
447 {
448 # makeclean directory
449 if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
450 if test "x$NOCLEAN" = xt ; then
451 echo "make Clean skipped!"
452 else
453 (
454 cd $1;
455 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
456 if test -r Makefile ; then
457 printf 'clean build-dir: make Clean ... '
458 $MAKE Clean >> make.tr_log 2>&1
459 RETVAL=$?
460 if test "x$RETVAL" != x0 ; then
461 tail make.tr_log
462 echo "makeclean: \"make Clean\" failed"
463 cp make.tr_log genmake.log genmake.tr_log $CDIR
464 return 1
465 fi
466 echo successful
467 else
468 echo ''
469 fi
470 exit 0
471 )
472 fi
473 }
474
475 run_clean()
476 {
477 # run_clean directory
478 if test "x$NOCLEAN" = xt ; then
479 echo "run_clean skipped!"
480 else
481 (
482 cd $1;
483 printf 'clean run-dir ... '
484 # part of what is done after "make clean" when doing "make CLEAN"
485 find . -name "*.meta" -exec rm {} \;
486 find . -name "*.data" -exec rm {} \;
487 find . -name "fort.*" -exec rm {} \;
488 find . -type l -exec rm {} \;
489 #- should remove executable only if sym-link (already done above)
490 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
491 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
492 rm -f *_MIT_CE_000.opt0000 costfunction*0000
493 rm -f oad_cp.[0-9][0-9][0-9].?????
494 rm -rf mnc_test_*
495 echo successful
496 exit 0
497 )
498 fi
499 }
500
501 makedependmodel()
502 {
503 # makedependmodel directory
504 if test "x$NODEPEND" = xt ; then
505 echo "make depend skipped!"
506 else
507 (
508 cd $1;
509 printf 'make depend ... '
510 $MAKE depend >> make.tr_log 2>&1
511 RETVAL=$?
512 if test "x$RETVAL" != x0 ; then
513 tail make.tr_log
514 echo "makedependmodel: make depend failed"
515 cp make.tr_log genmake.log genmake.tr_log $CDIR
516 return 1
517 else
518 echo successful
519 fi
520 )
521 fi
522 }
523
524 makemodel()
525 {
526 # makemodel directory
527 (
528 mk_fail=0
529 if test "x$NOMAKE" = xt ; then
530 cd $1;
531 if test -x $EXECUTABLE ; then
532 echo "make skipped!"
533 else
534 echo "no executable!"
535 mk_fail=3
536 fi
537 else
538 cd $1;
539 if test -r Makefile ; then
540 if test "x$MKSMALLF" = xt ; then
541 printf 'make small_f ... '
542 $MAKE_CMD small_f >> make.tr_log 2>&1
543 RETVAL=$?
544 if test "x$RETVAL" != x0 ; then
545 tail make.tr_log
546 echo failed
547 cp genmake.log genmake.tr_log $CDIR
548 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
549 rm -f $EXECUTABLE
550 mk_fail=1
551 else
552 echo successful
553 fi
554 fi
555 printf "make $TARG ... "
556 $MAKE_CMD $TARG >> make.tr_log 2>&1
557 RETVAL=$?
558 if test "x$RETVAL" != x0 ; then
559 tail make.tr_log
560 echo failed
561 cp genmake.log genmake.tr_log $CDIR
562 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
563 rm -f $EXECUTABLE
564 mk_fail=1
565 else
566 echo successful
567 fi
568 else
569 echo "no Makefile !"
570 mk_fail=2
571 fi
572 fi
573 if test $KIND = 1 -a -f taf_ftl.log ; then
574 head -1 taf_ftl.log >> $CDIR"/summary.txt"
575 fi
576 if test $KIND = 2 -a -f taf_ad.log ; then
577 head -1 taf_ad.log >> $CDIR"/summary.txt"
578 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
579 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
580 if test -f taf_output ; then
581 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
582 n3er=`grep -c '\*ERROR\* ' taf_output`
583 nerr=`expr $nerr + $n2er + $n3er`
584 fi
585 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
586 >> $CDIR"/summary.txt"
587 fi
588 if test $mk_fail != 0 ; then return $mk_fail ; fi
589 )
590 }
591
592 mk_mpi_size()
593 {
594 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
595 #
596 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
597 # for an MPI build with no more than proc_Nb processors ;
598 # ensure that enough tiles per proc (nSx,nSy) remain for the given
599 # number of threads (nTx,nTy) ;
600 # return the effective number of processors.
601
602 inp=$1
603 out=$2
604 np=$3
605 tx=$4
606 ty=$5
607 tmp=TTT.$$
608
609 # dirX : select with direction to favor in MPI process repartition
610 # dirX=1 : prefer to put more proc in X direction
611 # dirX=0 : prefer to put more proc in Y direction
612 dirX=0
613
614 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
615 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
616 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
617 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
618
619 #- for each direction, assume # of threads is a multiple of total number of tiles
620 nx=$px
621 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
622 nx=`expr $sx \* $px / $tx`
623 if [ $verbose -gt 1 ]; then
624 echo " change px from $px to $nx to accommodate $tx threads"
625 fi
626 fi
627 ny=$py
628 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
629 ny=`expr $sy \* $py / $ty`
630 if [ $verbose -gt 1 ]; then
631 echo " change py from $py to $ny to accommodate $ty threads"
632 fi
633 fi
634 #- find the largest divisor of input_file proc Nb, but not larger than $np
635 pp=0
636 i=1
637 while [ $i -le $nx ] ; do
638 if [ `expr $nx % $i` -eq 0 ] ; then
639 j=1
640 while [ $j -le $ny ] ; do
641 if [ `expr $ny % $j` -eq 0 ] ; then
642 ij=`expr $i \* $j`
643 if [ $ij -gt $pp ] ; then
644 flag=1
645 elif [ $ij -eq $pp ] ; then
646 flag=$dirX
647 else
648 flag=0
649 fi
650 if test $flag = 1 ; then
651 if [ $ij -le $np ] ; then
652 ix=$i ; jy=$j ; pp=$ij
653 #echo " ix,jy= $ix,$jy"
654 fi
655 fi
656 fi
657 j=`expr $j + 1`
658 done
659 fi
660 i=`expr $i + 1`
661 done
662
663 #- create new SIZE.h type file:
664 sx=`expr $sx \* $px / $ix`
665 sy=`expr $sy \* $py / $jy`
666 if [ $verbose -gt 1 ]; then
667 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
668 fi
669 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
670 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
671 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
672 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
673 rm -f $tmp
674 return $pp
675 }
676
677 symlink_mpifiles()
678 {
679 # Put special links so that MPI specific files are used
680 # This MUST be invoked between makeclean and makelinks because
681 # the Makefile will link to non-mpi files by default
682
683 dir=$1
684 code_dir=$2
685 build_dir=$dir/$3
686
687 # These are files that should replace their counter-part when using -mpi
688 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
689
690 for ii in $MPI_FILES ; do
691 i=`echo $ii | sed 's:^\./::'`
692 name=`echo $i | sed 's:_mpi::'`
693 file="../$code_dir/$i"
694 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
695
696 # Is this an MPI run?
697 if test "x$MPI" = x0 ; then
698 # NO: We undo any _mpi symbolically linked files
699 if test -L $build_dir/$name ; then
700 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
701 RETVAL=$?
702 if test "x$RETVAL" = x0 ; then
703 if [ $verbose -gt 1 ]; then
704 echo " Un-linking $name from ../$code_dir" ; fi
705 rm -f $build_dir/$name
706 fi
707 fi
708 else
709 # YES: We symbolically link these files to the build
710 # dir so long as there is no real file in place
711 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
712 RETVAL=$?
713 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
714 if test "x$RETVAL" != x0 ; then
715 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
716 if test ! -r $build_dir/$name ; then
717 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
718 (cd $build_dir; ln -sf $file $name)
719 fi
720 fi
721 fi
722 done
723 }
724
725 linkdata()
726 {
727 # linkdata run_dir input_dir_1 input_dir_2 ...
728 #
729 # symbolically link data files to run directory
730 if test -d $1 ; then
731 (
732 cd $1 ; shift
733 echo 'linkdata from dirs:' $*
734 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
735 for xx in $inpMPI ; do
736 if test -r "../"$1"/"$xx ; then
737 # found 1 _mpi sfx file in 1rst input dir and it is readable
738 yy=`echo $xx | sed 's:\.mpi$::'`
739 if test "x$MPI" = "x0" ; then
740 # not mpi test: remove symbolic link
741 if test -h $yy ; then rm -f $yy ; fi
742 else
743 # mpi test: remove symbolic link & link .mpi sfx file
744 if test -h $yy ; then rm -f $yy ; fi
745 if test ! -r $yy ; then
746 ln -sf "../"$1"/"$xx $yy ;
747 printf " $xx" 1>&2
748 fi
749 fi
750 fi
751 done
752 if test -r "../"$1"/eedata.mth" ; then
753 # found eedata.mth in 1rst input dir and it is readable
754 if test "x$MULTI_THREAD" = "xt" ; then
755 # multi-threaded test: remove symbolic link & link eedata.mth
756 if test -h eedata ; then rm -f eedata ; fi
757 if test ! -r eedata ; then
758 ln -sf "../"$1"/eedata.mth" eedata ;
759 printf ' eedata.mth' 1>&2
760 fi
761 else
762 # not multi-threaded test: remove eedata symbolic link
763 if test -h eedata ; then rm -f eedata ; fi
764 fi
765 fi
766 prevDir='NONE'
767 for ldir in $* ; do
768 if test -d "../"$ldir -a $ldir != $prevDir ; then
769 printf " ldir=${ldir}:" 1>&2
770 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
771 for i in $files ; do
772 if test ! -d "../"$ldir/$i ; then
773 if test ! -r $i ; then
774 printf ' '$i 1>&2
775 ln -sf "../"$ldir"/"$i $i
776 fi
777 fi
778 done
779 printf ' ;' 1>&2
780 if test -x "../"$ldir"/"prepare_run ; then
781 "../"$ldir"/"prepare_run 1>&2
782 else
783 echo '' 1>&2
784 fi
785 fi
786 prevDir=$ldir
787 done
788 )
789 fi
790 }
791
792 runmodel()
793 {
794 # runmodel directory
795 #
796 # runs $COMMAND in "directory"
797 # (where "$COMMAND" is relative to "directory")
798 (
799 cd $1
800 printf 'runmodel in %s ... ' $1
801 if test "x$MPI" != x0 ; then
802 #- adjust the MPI run command with the right number of Procs
803 #echo '' ; echo " COMMAND='$COMMAND'"
804 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC/ $LOC_NPROC/"`
805 if test "x$MPI_MFILE" != x ; then
806 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
807 fi
808 #echo " COMMAND='$COMMAND'"
809 fi
810 if test -L $EXECUTABLE ; then
811 if test -x "../"$builddir"/"$EXECUTABLE ; then
812 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
813 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
814 else rm -f $EXECUTABLE
815 fi
816 fi
817 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
818 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
819 ln -sf "../"$builddir"/"$EXECUTABLE .
820 fi
821 if test ! -x $EXECUTABLE ; then
822 rm -f $RUNLOG ; touch $RUNLOG
823 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
824 echo " no executable:" $EXECUTABLE >> $RUNLOG
825 RETVAL=8
826 ENDVAL=-1
827 else
828 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
829 # output do not exist or is older than executable:
830 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
831 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
832 #- Divided Adjoint Run:
833 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
834 if test $KIND = 2 -a -f run_ADM_DIVA ; then
835 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
836 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
837 eval "let $adm_diva_nb"
838 if [ $add_DIVA_runs -ge 1 ] ; then
839 rm -f costf* divided.ctrl snapshot*
840 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
841 for ii in `seq 1 $add_DIVA_runs` ; do
842 ( eval $COMMAND ) >> $RUNLOG 2>&1
843 echo " additional DIVA run # $ii : done" >> $RUNLOG
844 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
845 done
846 fi
847 fi
848 #- special DIVA processing ends here
849 ( eval $COMMAND ) >> $RUNLOG 2>&1
850 RETVAL=$?
851 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
852 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
853 find . -name "*.meta" -exec rm {} \;
854 find . -name "*.data" -exec rm {} \;
855 rm -rf mnc_test_*
856 fi
857 else
858 RETVAL=0
859 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
860 touch $RUNLOG
861 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
862 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
863 fi
864 fi
865 rm -f run.log_tmp
866 #- in all cases where OutputFile exists, report SIZE and time
867 if test -f $OUTPUTFILE ; then
868 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
869 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
870 # grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
871 # | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
872 # some implementations of grep cannot do contextual searches so we
873 # replace the above with a sed command
874 cat $OUTPUTFILE | sed -n '/Seconds in section "ALL/{N
875 N
876 N
877 p
878 }' | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
879 fi
880 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
881 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
882 echo successful
883 printf '=> output from running in %s :\n' $1 1>&2
884 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
885 return 0
886 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
887 #-- for some weird cases (run is finihed but with error code)
888 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
889 printf '=> output from running in %s :\n' $1 1>&2
890 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
891 return 0
892 else
893 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
894 printf '=> output from running in %s :\n' $1 1>&2
895 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
896 cp $RUNLOG $CDIR"/"$RUNLOG
897 return 1
898 fi
899 )
900 }
901
902 createcodelet()
903 {
904 # create codelet for comparing model output
905
906 printf "creating the comparison code (using CC=$CC)... "
907 cat > tr_cmpnum.c <<EOF
908 #include <stdio.h>
909 #include <math.h>
910 int main( int argc, char** argv ) {
911 int linnum,cmplin,best,lncnt;
912 double a,b,abave,relerr;
913 best = -22;
914 lncnt = 0;
915 while( 1 & ( (lncnt+=1) < 999 ) ) {
916 scanf("%d", &linnum);
917 if (linnum == -1) break;
918 scanf("%lf", &a); scanf("%lf", &b);
919 abave = 0.5*(fabs(a)+fabs(b));
920 if ( abave == abave ) {
921 if (abave > 0.0) {
922 relerr=fabs(a-b)/abave;
923 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
924 else { cmplin = -16 ; }
925 best = (best > cmplin) ? best : cmplin; }
926 else { cmplin = -22 ; }
927 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
928 }
929 else {
930 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
931 break; }
932 }
933 if (lncnt == 999) best=-29;
934 if (linnum != -1) best=-99;
935 printf("%d\n", -best);
936 return 0;
937 }
938 EOF
939 $CC -o tr_cmpnum tr_cmpnum.c -lm
940
941 if [ -x ./tr_cmpnum ]; then
942 echo "OK"
943 return 0
944 else
945 echo
946 echo "ERROR: failed to compile comparison code -- please specify"
947 echo " a C compiler using the CC environment variable."
948 exit 1
949 fi
950 }
951
952 formatresults()
953 {
954 # formatresults expt genmake depend make run results*
955
956 nm=$1
957 printf '%s %s %s %s' $2 $3 $4 $5
958 shift; shift; shift; shift; shift;
959 listPrt=$@
960 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
961 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
962 printf '%3s' $listPrt
963 # line below does not work on hp-ux_ia64 : do those substitutions later on
964 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
965
966 if [ $xx = '..' ]; then
967 printf ' N/O '
968 elif [ $xx = '--' ]; then
969 printf ' N/O '
970 elif [ $xx = 99 ]; then
971 printf ' N/O '
972 else
973 if [ $xx -ge $MATCH_CRIT ]; then
974 printf ' pass'
975 else
976 printf ' FAIL'
977 fi
978 fi
979 printf ' %s' $nm
980 if test $KIND = 2 ; then
981 #-- apppend taf repport summary:
982 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
983 if test $tafrep = 1 ; then
984 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
985 fi
986 fi
987 printf '\n'
988
989 }
990
991 scandirs()
992 {
993 if [ $# -eq 1 ]; then
994 for arg in * ; do
995 #test -f $arg/$1 && echo $arg
996 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
997 done
998 else
999 echo $*
1000 fi
1001 }
1002
1003
1004 check_eedata()
1005 {
1006 # check_eedata eedata size.h
1007 if [ $# -eq 2 ] ; then
1008 if test -f $1 -a -f $2 ; then
1009 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1010 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
1011 if test "x$nx" = x ; then
1012 rx=10
1013 else
1014 rx=`expr $sx % $nx`
1015 fi
1016 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1017 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
1018 if test "x$ny" = x ; then
1019 ry=20
1020 else
1021 ry=`expr $sy % $ny`
1022 fi
1023 echo `expr $rx + $ry`
1024 else
1025 echo '-1'
1026 fi
1027 elif [ $# -eq 1 ] ; then
1028 if test -f $1 ; then
1029 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1030 if test "x$nx" = x ; then nx=1 ; fi
1031 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1032 if test "x$ny" = x ; then ny=1 ; fi
1033 #echo $nx $ny
1034 echo $nx
1035 else
1036 echo '-1'
1037 fi
1038 else
1039 echo '-2'
1040 fi
1041
1042 }
1043
1044 ###############################################################################
1045
1046
1047 # Default properties
1048 debug=0
1049 verbose=1
1050 NBLINES_MKLOG=16000
1051
1052 OptLev=1
1053 GSL=f
1054
1055 CLEANUP=f
1056 NORUN=f
1057 QUICK=f
1058 NOMAKE=f
1059 NOGENMAKE=f
1060 NOCLEAN=f
1061 NODEPEND=f
1062 POSTCLEAN=0
1063
1064 BASH=
1065 OPTFILE=NONE
1066 ADDRESSES=
1067 TESTDIRS=
1068 SKIPDIRS=
1069 MPACKDIR="../tools/mpack-1.6"
1070 HAVE_MPACK=
1071 MPACK=
1072 SENDCMD=
1073 SAVDIR='.'
1074 COMMAND=
1075 MKDEPEND=
1076 if test "x$MAKE" = x ; then
1077 MAKE=make
1078 fi
1079 MAKE_CMD=
1080 if test "x$CC" = x ; then
1081 CC=cc
1082 fi
1083 JOBS=
1084 TARG=
1085 MPI=0
1086 MPI_MFILE=
1087 MULTI_THREAD=f
1088 OUTDIR=
1089 DELDIR=
1090 USE_R4=
1091 EXTRFLG=
1092 NOCATAD=
1093 MKSMALLF=
1094
1095 #- type of testing (KIND):
1096 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1097 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1098 KIND=0
1099
1100 # list of pTracers to check for monitor output
1101 PTRACERS_NUM="1 2 3 4 5"
1102
1103 MATCH_CRIT=10
1104
1105 printf "parsing options... "
1106
1107 ac_prev=
1108 for ac_option ; do
1109
1110 # If the previous option needs an argument, assign it.
1111 if test -n "$ac_prev"; then
1112 eval "$ac_prev=\$ac_option"
1113 ac_prev=
1114 continue
1115 fi
1116
1117 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1118
1119 case $ac_option in
1120
1121 -help | --help | -h | --h) usage ;;
1122
1123 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1124 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1125
1126 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1127 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1128 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1129 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1130
1131 -send | --send ) ac_prev=SENDCMD ;;
1132 -send=* | --send=* ) SENDCMD=$ac_optarg ;;
1133 -savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
1134 -savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
1135
1136 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1137 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1138 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1139 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1140
1141 -bash | --bash | -b | --b) ac_prev=BASH ;;
1142 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1143
1144 -command | --command | -c | --c) ac_prev=COMMAND ;;
1145 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1146
1147 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1148 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1149
1150 -make | --make | -m | --m) ac_prev=MAKE ;;
1151 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1152
1153 -repl_mk | --repl_mk ) ac_prev=MAKE_CMD ;;
1154 -repl_mk=* | --repl_mk=*) MAKE_CMD=$ac_optarg ;;
1155
1156 -odir | --odir) ac_prev=OUTDIR ;;
1157 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1158
1159 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1160 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1161
1162 -match | --match ) ac_prev=MATCH_CRIT ;;
1163 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1164
1165 -j | --j) ac_prev=JOBS ;;
1166 -j=* | --j=*) JOBS=$ac_optarg ;;
1167
1168 -ef | --ef) ac_prev=EXTRFLG ;;
1169 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1170
1171 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1172
1173 -norun | --norun | -nr | --nr) NORUN=t ;;
1174 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1175 -src | --src ) TARG='small_f' ; NORUN=t ;;
1176 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1177 -quick | --quick | -q | --q) QUICK=t ;;
1178 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1179 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1180 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1181
1182 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1183 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1184
1185 -mpi | --mpi) MPI=2 ;;
1186 -MPI | --MPI) ac_prev=MPI ;;
1187 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1188
1189 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1190 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1191
1192 -mth) MULTI_THREAD=t ;;
1193
1194 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1195 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1196 fi ;;
1197 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1198 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1199 fi ;;
1200 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1201 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1202 fi ;;
1203 -ncad) NOCATAD=t ;;
1204 -small_f) MKSMALLF=t ;;
1205
1206 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1207 printf " ... " ;;
1208 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1209 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1210 -fast) OptLev=`expr $OptLev \* 2` ;;
1211 -devel) OptLev=0 ;;
1212 -gsl) GSL=t ;;
1213
1214 -verbose) verbose=2 ;;
1215 -debug) debug=1 ;;
1216 -quiet) verbose=0 ;;
1217
1218 -deldir | -dd) DELDIR=t ;;
1219
1220 -use_r4|-ur4) USE_R4=t ;;
1221
1222 -ts) TS=t;;
1223 -papis) PAPIS=t;;
1224 -pcls) PCLS=t;;
1225
1226 -*) echo "Error: unrecognized option: "$ac_option
1227 usage ;;
1228 *) echo "Error: unrecognized argument: "$ac_option
1229 usage ;;
1230
1231 esac
1232
1233 done
1234
1235 if test "x$QUICK" = xt ; then
1236 NOGENMAKE=t
1237 NOCLEAN=t
1238 NODEPEND=t
1239 fi
1240 if test "x$MAKE_CMD" = x ; then MAKE_CMD=$MAKE ; fi
1241
1242 #- check length of MPI machine file:
1243 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1244 if test -r $MPI_MFILE ; then
1245 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1246 if [ $nl -lt $MPI ] ; then
1247 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1248 usage
1249 fi
1250 if [ $verbose -gt 1 ]; then
1251 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1252 fi
1253 else
1254 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1255 usage
1256 fi
1257 fi
1258
1259 #- setting for forward or ADM testing
1260 if test $KIND = 1 ; then
1261 if test "x$TARG" = xsmall_f ; then TARG=ftltaf ; else TARG=ftlall ; fi
1262 code_dir=code_ad
1263 inputdir=input_ad
1264 ref_outp="output_tlm.txt"
1265 EXECUTABLE="mitgcmuv_ftl"
1266 elif test $KIND = 2 ; then
1267 if test "x$TARG" = x ; then TARG=adall ; fi
1268 if test "x$TARG" = xobj ; then TARG=adobj ; fi
1269 if test "x$TARG" = xsmall_f ; then TARG=adtaf ; fi
1270 code_dir=code_ad
1271 inputdir=input_ad
1272 ref_outp="output_adm.txt"
1273 EXECUTABLE="mitgcmuv_ad"
1274 elif test $KIND = 4 ; then
1275 TARG=adAll
1276 code_dir=code_oad
1277 inputdir=input_oad
1278 ref_outp="output_oadm.txt"
1279 EXECUTABLE="mitgcmuv_ad"
1280 else
1281 code_dir=code
1282 inputdir=input
1283 ref_outp="output.txt"
1284 EXECUTABLE="mitgcmuv"
1285 fi
1286 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1287
1288 xx=`echo $TESTDIRS | awk '{print $1}'`
1289 if test "x$TESTDIRS" = x ; then
1290 LIST=`scandirs results/$ref_outp`
1291 elif test $xx = 'start_from' ; then
1292 xx=`echo $TESTDIRS | awk '{print $2}'`
1293 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1294 else
1295 #- expand group of experiments:
1296 LIST=" "
1297 for xx in $TESTDIRS
1298 do
1299 case $xx in
1300 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1301 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1302 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1303 ;;
1304 'tutorials')
1305 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1306 *) LIST=${LIST}" "$xx ;;
1307 esac
1308 done
1309 fi
1310 #echo 'LIST='${LIST}'<'
1311 #- skip dirs, remove duplicate and non-directory:
1312 TESTDIRS=" "
1313 count=0
1314 for xx in $LIST
1315 do
1316 yy=`echo $SKIPDIRS | grep -c $xx`
1317 if test $yy = 0 ; then
1318 if test -d $xx ; then
1319 yy=`echo $TESTDIRS | grep -c $xx`
1320 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1321 else count=1 ;
1322 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1323 fi
1324 else
1325 if test $count = 1 ; then echo -n ", \"$xx\""
1326 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1327 fi
1328 fi
1329 done
1330 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1331 #echo 'TESTDIRS='${TESTDIRS}'<'
1332
1333 LOC_MFILE='tr_mpi_mfile'
1334 RUNLOG="run.tr_log"
1335 if test "x$MPI" = x0 ; then
1336 OUTPUTFILE=$ref_outp
1337 if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi
1338 else
1339 OUTPUTFILE="STDOUT.0000"
1340 if test "x$COMMAND" = x ; then COMMAND="mpirun -np TR_NPROC ./$EXECUTABLE" ; fi
1341 fi
1342
1343 echo "OK (COMMAND='$COMMAND')"
1344
1345 #TMP=./tr_$$
1346 #- try to put temporary files in system-local /tmp dir
1347 TMP=/tmp/tr_${USER}_$$
1348 touch $TMP ; retVal=$?
1349 if [ $retVal -eq 0 ] ; then
1350 if test ! -r $TMP ; then TMP=./tr_$$ ; fi
1351 else
1352 TMP=./tr_$$
1353 fi
1354 rm -f $TMP
1355 if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
1356
1357 # set the Default List of output variables to be checked:
1358 # (use default or load experiment-specific list from file "tr_checklist")
1359 # content : 1rst = main variable used to decide if it pass or FAIL
1360 # others = number of matching digits to be printed in summary.txt
1361 if test $KIND = 1 ; then
1362 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1363 EMPTY_RESULTS='.. .. ..'
1364 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1365 elif test $KIND = 2 -o $KIND = 4 ; then
1366 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1367 EMPTY_RESULTS='.. .. ..'
1368 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1369 else
1370 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1371 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1372 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1373 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1374 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1375 fi
1376
1377 # create the FORTRAN comparison code
1378 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1379 echo "skipping comparison code build"
1380 else
1381 createcodelet
1382 fi
1383
1384 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1385 if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
1386 echo "skipping mpack build"
1387 else
1388 build_mpack
1389 if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
1390 fi
1391
1392 # Create a uniquely named directory to store results
1393 CMDLINE=$0
1394 for xx in "$@" ; do nw=`echo $xx | wc -w`
1395 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1396 nb=`echo $xx | grep -c '='`
1397 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1398 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1399 CMDLINE="$CMDLINE $yy" ; fi
1400 fi
1401 done
1402 MACH=`hostname`
1403 UNAMEA=`uname -a`
1404 DATE=`date +%Y%m%d`
1405 BASE="tr_"$MACH"_"$DATE"_"
1406 if test "x$OUTDIR" != x ; then
1407 BASE="tr_"$OUTDIR"_"$DATE"_"
1408 else
1409 #short_name=`hostname -s | tr '[:upper:]' '[:lower:]'`
1410 # hostname -s is not universal (does work on AIX system)
1411 short_name=`hostname | sed 's/\..*$//' | tr '[:upper:]' '[:lower:]'`
1412 BASE="tr_"$short_name"_"$DATE"_"
1413 fi
1414 DNUM=0
1415 DRESULTS="$BASE$DNUM"
1416 while test -e $DRESULTS ; do
1417 DNUM=$(( $DNUM + 1 ))
1418 DRESULTS="$BASE$DNUM"
1419 done
1420 mkdir $DRESULTS
1421 RETVAL=$?
1422 if test "x$RETVAL" != x0 ; then
1423 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1424 exit 1
1425 fi
1426 SUMMARY="$DRESULTS/summary.txt"
1427 start_date=`date`
1428 echo $start_date > $SUMMARY
1429 echo 'run:' $CMDLINE >> $SUMMARY
1430 echo 'on :' $UNAMEA >> $SUMMARY
1431
1432 of_path=
1433 if test "x$OPTFILE" != xNONE ; then
1434 if test -r $OPTFILE ; then
1435 # get the path
1436 path=${OPTFILE%/*}
1437 if test "x$path" = x ; then
1438 of_path=`pwd`
1439 else
1440 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1441 fi
1442 file=${OPTFILE##*/}
1443 OPTFILE=$of_path/$file
1444 cp $OPTFILE $DRESULTS
1445 echo >> $SUMMARY
1446 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1447 else
1448 echo | tee -a $SUMMARY
1449 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1450 exit 1
1451 fi
1452 else
1453 echo >> $SUMMARY
1454 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1455 #-note: to be filled later after 1rst run
1456 fi
1457 echo
1458 echo >> $SUMMARY
1459 if test $KIND = 0 ; then
1460 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1461 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1462 line_1="G D M c m s m s m s m s"
1463 line_2="e p a R g m m e . m m e . m m e . m m e ."
1464 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1465 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1466 for ii in $PTRACERS_NUM ; do
1467 line_0="$line_0 --PTR 0"$ii"--"
1468 line_1="$line_1 m s"
1469 line_2="$line_2 m m e ."
1470 line_3="$line_3 i a a d"
1471 line_4="$line_4 n x n ."
1472 done
1473 else
1474 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1475 if test $KIND = 1 ; then
1476 #echo "TANGLIN=true" >> $SUMMARY
1477 echo "TangLin generated by TAF" >> $SUMMARY
1478 elif test $KIND = 3 ; then
1479 echo "TangLin generated by OpenAD" >> $SUMMARY
1480 elif test $KIND = 2 ; then
1481 #echo "ADJOINT=true" >> $SUMMARY
1482 echo "Adjoint generated by TAF" >> $SUMMARY
1483 else
1484 echo "Adjoint generated by OpenAD" >> $SUMMARY
1485 fi
1486 if test $KIND = 1 -o $KIND = 3 ; then
1487 line_1="G D M C T F"
1488 line_2="e p a R o L D"
1489 else
1490 line_1="G D M C A F"
1491 line_2="e p a R o d D"
1492 fi
1493 line_3="n n k u s G G"
1494 line_4="2 d e n t r r"
1495 echo >> $SUMMARY
1496 fi
1497 if test "x$CLEANUP" != xt ; then
1498 echo "$line_0" | tee -a $SUMMARY
1499 echo "$line_1" | tee -a $SUMMARY
1500 echo "$line_2" | tee -a $SUMMARY
1501 echo "$line_3" | tee -a $SUMMARY
1502 echo "$line_4" | tee -a $SUMMARY
1503 echo "" | tee -a $SUMMARY
1504 fi
1505 echo "-------------------------------------------------------------------------------"
1506
1507 # ...and each test directory...
1508 for dir in $TESTDIRS ; do
1509
1510 # set builddir & rundir:
1511 builddir="build"
1512 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1513 rundir="run"
1514 pfxdir="tr_$rundir"
1515 if test ! -d $dir/$rundir ; then
1516 rundir=$builddir
1517 fi
1518 CODE_DIR=$dir/$code_dir
1519 BUILD_DIR=$dir/$builddir
1520
1521 # Cleanup only!
1522 if test "x$CLEANUP" = xt ; then
1523 echo -n ' --- dir:' $BUILD_DIR ': '
1524 makeclean $BUILD_DIR
1525 ( cd $BUILD_DIR
1526 rm -f $EXECUTABLE *.bak
1527 rm -f genmake_state genmake_*optfile genmake.log
1528 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1529 rm -rf mpi_headers
1530 )
1531 if test -d $dir/$rundir/CVS ; then
1532 echo -n ' --- dir:' $dir/$rundir ': '
1533 run_clean $dir/$rundir
1534 fi
1535 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1536 ttd=`echo $trdir | wc -w`
1537 if test $ttd != 0 ; then
1538 echo ' --- rm dir:' $trdir
1539 ( cd $dir ; rm -rf $trdir )
1540 fi
1541 continue
1542 fi
1543
1544 # Verify that the testdir exists and contains previous
1545 # results in the correct location--or skip this directory!
1546 fout=$dir"/results/"$ref_outp
1547 #if test ! -r $fout ; then
1548 if test ! -r $fout -a ! -r ${fout}.gz ; then
1549 echo "can't read \"$fout\" -- skipping $dir"
1550 continue
1551 fi
1552
1553 # Check for specific files for particular type of run
1554
1555 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1556 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1557 continue
1558 fi
1559 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1560 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1561 continue
1562 fi
1563
1564 if test "x$MPI" != "x0" ; then
1565 ntx=1 ; nty=1
1566 if test "x$MULTI_THREAD" = "xt" ; then
1567 ff=$dir"/input/eedata.mth"
1568 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1569 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1570 if test "x$ntx" = x ; then ntx=1 ; fi
1571 if test "x$nty" = x ; then nty=1 ; fi
1572 fi
1573 #- create new SIZE.h with no more than '$MPI' Procs
1574 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1575 LOC_NPROC=$?
1576 ( cd $BUILD_DIR
1577 if test -r SIZE.h.mpi ; then
1578 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1579 else RETVAL=1
1580 fi
1581 if test "x$RETVAL" = x0 ; then
1582 rm -f tr_size.mpi
1583 else
1584 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1585 fi
1586 )
1587 if test "x$MPI_MFILE" != x ; then
1588 #- create new MPI machine-file with the right number of Procs
1589 rm -f $LOC_MFILE
1590 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1591 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1592 if [ $nl -lt $LOC_NPROC ] ; then
1593 rm -f $LOC_MFILE
1594 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1595 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1596 fi
1597 if [ $verbose -gt 1 ]; then
1598 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1599 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1600 fi
1601 fi
1602 if test "x$MULTI_THREAD" = "xt" ; then
1603 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1604 if test $retv != 0 ; then
1605 echo "input/eedata.mth tiling misfit -- skipping $dir"
1606 continue
1607 fi
1608 fi
1609 fi
1610
1611 # Check whether there are "extra runs" for this testdir
1612 extra_runs=
1613 if test "x$NORUN" = xf ; then
1614 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1615 fi
1616 #echo "ex_run_dirs='$ex_run_dirs'"
1617 for exd in $ex_run_dirs ; do
1618 name=`echo $exd | sed -e "s/$inputdir\.//"`
1619 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1620 outf="$dir/results/$refExOut"
1621 if test -r $outf -o -r ${outf}.gz ; then
1622 if test "x$MULTI_THREAD" = "xt" ; then
1623 if test -r $dir"/"$exd"/eedata.mth" ; then
1624 if test "x$MPI" = "x0" ; then
1625 extra_runs="$extra_runs $name"
1626 else
1627 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1628 if test $retv = 0 ; then
1629 extra_runs="$extra_runs $name"
1630 else
1631 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1632 fi
1633 fi
1634 #else echo $dir"/"$exd"/eedata.mth: not found"
1635 fi
1636 else
1637 extra_runs="$extra_runs $name"
1638 fi
1639 fi
1640 done
1641
1642 echo
1643 if test "x$extra_runs" = "x" ; then
1644 echo "Experiment: $dir"
1645 else
1646 echo "Experiment: $dir ; extra_runs=$extra_runs"
1647 fi
1648 echo
1649 unset genmake makedepend make run
1650 results=$EMPTY_RESULTS
1651
1652 # Create an output dir & summary.txt file for each tested experiment (tdir)
1653 locDIR=$DRESULTS"/"$dir
1654 mkdir $locDIR
1655 #- report to this experiment local summary file ---
1656 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1657 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1658 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1659 CDIR=`pwd`"/$locDIR"
1660
1661 if test "x$NORUN" = xt ; then
1662 run=N
1663 genmakemodel $dir/$builddir && genmake=Y \
1664 && makeclean $dir/$builddir \
1665 && symlink_mpifiles $dir $code_dir $builddir \
1666 && makedependmodel $dir/$builddir && makedepend=Y \
1667 && makemodel $dir/$builddir && make=Y
1668 echo
1669 else
1670 genmakemodel $dir/$builddir && genmake=Y \
1671 && makeclean $dir/$builddir \
1672 && symlink_mpifiles $dir $code_dir $builddir \
1673 && makedependmodel $dir/$builddir && makedepend=Y \
1674 && makemodel $dir/$builddir && make=Y \
1675 && run_clean $dir/$rundir \
1676 && linkdata $dir/$rundir $inputdir \
1677 && runmodel $dir/$rundir && run=Y \
1678 && results=`testoutput_run $dir $rundir $ref_outp`
1679 echo 1>&2
1680 fi
1681 #echo "results='$results'"
1682
1683 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1684 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1685 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1686
1687 for ex in $extra_runs ; do
1688 unset run
1689 results=$EMPTY_RESULTS
1690 # reference output file
1691 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1692 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1693 locDIR=$DRESULTS"/"$dir"."$ex
1694 mkdir $locDIR
1695 #- report to this experiment local summary file ---
1696 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1697 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1698 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1699 CDIR=`pwd`"/$locDIR"
1700 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1701 run_clean $dir/$pfxdir.$ex
1702 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1703 runmodel $dir/$pfxdir.$ex && run=Y \
1704 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1705 echo 1>&2
1706
1707 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1708 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1709 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1710 if test "x$POSTCLEAN" = x2 ; then
1711 run_clean $dir/$pfxdir.$ex
1712 fi
1713 done
1714
1715 if test ! -f $DRESULTS"/"genmake_state ; then
1716 if test -f $dir/$builddir/Makefile ; then
1717 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1718 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1719 # sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1720 # bsd-sed cannot do the above code
1721 cat $dir/$builddir/Makefile | \
1722 sed -n '/^# executed by:/{N
1723 p
1724 }' >> $DRESULTS/genmake_state
1725 echo " $mkOpt" >> $DRESULTS/genmake_state
1726 if test "x$OPTFILE" = xNONE ; then
1727 eval $mkOpt
1728 # sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1729 # $SUMMARY > tmp.tr_log
1730 # bsd-sed requires a newline after "a\":
1731 sed "/^No \"OPTFILE\" was specified ; genmake2/a\\
1732 OPTFILE=${OPTFILE}" $SUMMARY > tmp.tr_log
1733 RETVAL=$?
1734 if test "x$RETVAL" = x0 ; then
1735 cp -f tmp.tr_log $SUMMARY
1736 fi
1737 rm -f tmp.tr_log
1738 fi
1739 gmkLog=$dir/$builddir/genmake.log
1740 if test -r $gmkLog ; then
1741 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1742 RETVAL=$?
1743 if test "x$RETVAL" = x0 ; then
1744 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1745 echo "extract compiler version:" >> $DRESULTS/genmake_state
1746 sed -n '/Get compiler version/,/<-- compiler version/p' \
1747 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1748 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1749 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1750 >> $DRESULTS/genmake_state
1751 rm -f tmp.tr_log
1752 fi
1753 fi
1754 gmkLog=$dir/$builddir/genmake_state
1755 if test -r $gmkLog ; then
1756 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1757 echo "get genmake settings:" >> $DRESULTS/genmake_state
1758 sed -n '/^HAVE_/p' $gmkLog | sed 's/^./ &/' \
1759 >> $DRESULTS/genmake_state
1760 fi
1761 fi
1762 fi
1763 #postclean $dir/$builddir
1764 if test "x$POSTCLEAN" = x2 ; then
1765 makeclean $dir/$builddir \
1766 && run_clean $dir/$rundir
1767 fi
1768 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1769
1770 echo "-------------------------------------------------------------------------------"
1771
1772 done
1773
1774 printf "Start time: " >> $SUMMARY
1775 echo "$start_date" >> $SUMMARY
1776 printf "End time: " >> $SUMMARY
1777 date >> $SUMMARY
1778
1779 # If addresses were supplied and mpack built successfully, then try
1780 # to send email using mpack.
1781 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1782 echo "No results email was sent."
1783 else
1784 if test "x$SENDCMD" != x ; then
1785 SendOpt='' ; headCMD=`echo $SENDCMD | awk '{print $1}'`
1786 if test $headCMD != 'scp' ; then SendOpt='-s MITgcm-test -m 3555000' ; fi
1787 if [ $verbose -gt 1 ]; then
1788 echo " run: $SENDCMD $SendOpt ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
1789 fi
1790 tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
1791 && gzip ${SAVDIR}/${DRESULTS}".tar" \
1792 && $SENDCMD $SendOpt ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
1793 RETVAL=$?
1794 if test "x$RETVAL" != x0 ; then
1795 echo
1796 echo "Warning: The tar, gzip, & $SENDCMD step failed. Please send email"
1797 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1798 echo " summary of results from the directory \"$DRESULTS\"."
1799 echo
1800 else
1801 echo
1802 echo "An email containing results was sent to the following addresses:"
1803 echo " \"$ADDRESSES\""
1804 echo
1805 test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
1806 test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
1807 fi
1808 fi
1809 fi
1810
1811 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1812 rm -f tr_cmpnum.c tr_cmpnum
1813 fi
1814
1815 if test "x$CLEANUP" != xt ; then
1816 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1817 if test -e tr_out.txt ; then
1818 mv tr_out.txt tr_out.txt.old
1819 fi
1820 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1821 fi
1822
1823 if test "x$DELDIR" = xt ; then
1824 rm -rf $DRESULTS
1825 fi
1826 echo "======== End of testreport execution ========"

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