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Revision 1.199 - (show annotations) (download)
Wed Feb 18 16:11:31 2015 UTC (9 years, 2 months ago) by mlosch
Branch: MAIN
Changes since 1.198: +16 -6 lines 
  - fix two non-POSIX sed statements so that there are no error messages
    on Mac OS X
  - replace hostname -s with hostname | sed 's/\..*$//'
1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.198 2014/11/11 15:45:57 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " ---- type of test : ----"
15 echo " (-tlm) perform a Tangent Linear run"
16 echo " (-adm|-ad) perform an adjoint run"
17 echo " (-oad) perform an OpenAD adjoint run"
18 echo " (-mth) run multi-threaded (using eedata.mth)"
19 echo " (-mpi) use MPI to compile and run on 2 processors"
20 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
21 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
22 echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)"
23 echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'"
24 echo " ---- testing options : ----"
25 echo " (-optfile|-of) STRING list of optfiles to use"
26 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
27 echo " DEF=off => use IEEE numerics option (if available)"
28 echo " (-devel) use optfile developement flags (if available)"
29 echo " (-gsl) compile with \"-gsl\" flag"
30 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
31 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
32 echo " (recognized groups: basic, tutorials)"
33 echo " (DEF=\"\" which test all)"
34 echo " (if list= 'start_from THIS_EXP' then"
35 echo " test THIS_EXP + all the following)"
36 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
37 echo " (DEF=\"\" which test all)"
38 echo " (-ts) provide timing information per timestep"
39 echo " (-papis) provide MFlop/s per timestep using PAPI"
40 echo " (-pcls) provide MFlop/s per timestep using PCL"
41 echo " ---- system options : ----"
42 echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
43 echo " (DEF=\"\" for \"bash\")"
44 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
45 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
46 echo " (-make|-m) STRING command to use for \"make\""
47 echo " (DEF=\"make\")"
48 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
49 echo " ---- output options : ----"
50 echo " (-match) NUMBER Matching Criteria (number of digits)"
51 echo " (DEF=\"$MATCH_CRIT\")"
52 echo " (-odir) STRING used to build output directory name"
53 echo " (DEF=\"hostname\")"
54 echo " (-addr|-a) STRING list of email recipients"
55 echo " (DEF=\"\" no email is sent)"
56 echo " (-send) STRING sending command (instead of using mpack)"
57 echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
58 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
59 echo " (DEF=\"../tools/mpack-1.6\")"
60 echo " -- do only some parts: --"
61 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
62 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
63 echo " (-obj) only produces objects (=norun & no executable)"
64 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
65 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
66 echo " (-nogenmake|-ng) skip the genmake stage"
67 echo " (-noclean|-nc) skip the \"make clean\" stage"
68 echo " (-nodepend|-nd) skip the \"make depend\" stage"
69 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
70 echo " (-deloutp|-do) delete output files after successful run"
71 echo " (-deldir|-dd) on success, delete the output directory"
72 echo
73 echo "and where STRING can be a whitespace-delimited list"
74 echo "such as:"
75 echo
76 echo " -t 'exp0 exp2 exp3' "
77 echo " -addr='abc@123.com testing@home.org'"
78 echo
79 echo "provided that the expression is properly quoted within the current"
80 echo "shell (note the use of single quotes to protect white space)."
81 echo
82 exit 1
83 }
84
85 # build the mpack utility
86 build_mpack()
87 {
88 printf "building the mpack utility... "
89 MPACK="$MPACKDIR/mpack"
90 if test ! -x $MPACK ; then
91 if test ! -d $MPACKDIR ; then
92 echo
93 echo "Error: can't find \"$MPACKDIR\""
94 echo " are you sure this program is being run in the correct "
95 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
96 echo
97 HAVE_MPACK=f
98 fi
99 if test "x$CC" = x ; then
100 export CC=cc
101 fi
102 printf "building mpack (using CC=$CC)... "
103 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
104 RETVAL=$?
105 if test "x$RETVAL" != x0 ; then
106 echo
107 echo "Error building the mpack tools at: $MPACK_DIR"
108 echo
109 HAVE_MPACK=f
110 else
111 rm -f tr_build_mpack.out
112 HAVE_MPACK=t
113 echo "done"
114 fi
115 else
116 HAVE_MPACK=t
117 echo "already exist"
118 fi
119 }
120
121 testoutput_var()
122 {
123 # testoutput_var dir s1 label subdir reference_output
124 #
125 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
126 # with same output from reference file $dir/$reference_output
127 # using search strings s1 and text label
128
129 if [ $debug -gt 0 ]; then
130 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
131 fi
132 if [ -r $1/$4/$OUTPUTFILE ]; then
133 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > ${TMP}a.txt
134 lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
135 if [ $lncntA -lt 2 ]; then
136 if [ $verbose -gt 0 ]; then
137 echo Not enough lines of output when searching for "$2" 1>&2
138 fi
139 rm -f ${TMP}a.txt ; return 99
140 fi
141 else
142 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
143 return 99
144 fi
145 if [ $debug -gt 0 ]; then
146 echo testoutput_var: grep "$2" $1/$5 1>&2
147 fi
148 grep "$2" $1/$5 | sed 's/.*=//' | cat -n > ${TMP}b.txt
149 lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
150 if [ $lncntB -lt 2 ]; then
151 if [ $verbose -gt 0 ]; then
152 echo Not enough lines of output when searching for "$2" 1>&2
153 fi
154 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
155 fi
156 if [ $lncntA -ne $lncntB ]; then
157 if [ $verbose -gt 0 ]; then
158 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
159 fi
160 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
161 fi
162 has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
163 if [ $has_nan -gt 0 ] ; then
164 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
165 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
166 fi
167 has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
168 if [ $has_inf -gt 0 ] ; then
169 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
170 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
171 fi
172 if [ $debug -gt 0 ]; then
173 echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
174 fi
175 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
176 join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
177 if [ $debug -gt 0 ]; then
178 echo testoutput_var: compare_lines 1>&2
179 fi
180 if [ $verbose -gt 1 ]; then
181 cat ${TMP}c.txt 1>&2
182 fi
183 echo "-1" >> ${TMP}c.txt
184 digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
185 if [ $digits_of_similarity -eq 99 ]; then
186 if [ $verbose -gt 0 ]; then
187 echo testoutput_var: No comparison was available for \"$3\" 1>&2
188 fi
189 digits_of_similarity=99
190 else
191 if [ $verbose -gt 0 ]; then
192 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
193 fi
194 fi
195 rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
196
197 return $digits_of_similarity
198 }
199
200 testoutput_run()
201 {
202 # testoutput_run directory subdir reference_output
203 #
204 # test output from 1 run in "directory"
205 # --> same processing for adjoint & forward test
206 # default list of output variables to be checked:
207 # 1rst : main variable used to decide if it pass or FAIL
208 # others : number of matching digits to be printed in summary.txt
209 listChk=$DEF_CHECK_LIST
210 # load experiment-specific list from file "tr_checklist" (if it exist)
211 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
212 sVar=`echo $listChk | awk '{print $1}'`
213 # remove 1rst var and expand the list: + => min max mean s.d
214 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
215 | sed 's/+//g' | sed "s/^$sVar//"`
216 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
217 # set ref.outp file-name and, if compressed, uncompress it into subdir
218 refoutp=results/$3
219 if test ! -r $1/results/$3 ; then
220 if test -r $1/results/${3}.gz ; then
221 tmpNam1=$3
222 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
223 if test "x$tmpNam1" = "x$tmpNam2" ; then
224 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
225 fi
226 refoutp=$2/$tmpNam1
227 if [ $debug -gt 0 ]; then
228 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
229 fi
230 gzip -cd $1/results/${3}.gz > $1/$refoutp
231 else
232 echo "missing reference output file '$3' (.gz) in '$1/results/'"
233 fi
234 fi
235 # check for ptracer output in reference_output file :
236 if test $KIND = 0 ; then
237 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
238 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
239 for ii in $PTRACERS_NUM ; do
240 ptrfound=0
241 for jj in $ptr_mon ; do
242 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
243 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
244 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
245 done
246 if test $ptrfound = '1' ; then
247 eval "HAVE_PTR0"$ii"=t"
248 else
249 eval "HAVE_PTR0"$ii"=f"
250 # remove this ptr from the list of output variable to check
251 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
252 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
253 fi
254 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
255 done
256 fi
257 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
258 if test $tst != 1 ; then
259 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
260 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
261 echo "==> WARNING: in checked list:" $listVar 1>&2
262 #- put it back once:
263 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
264 fi
265 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
266 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
267 #---
268 allargs=""
269 for xx in $listVar
270 do
271 case $xx in
272 'PS') if [ $debug -gt 0 ]
273 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
274 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
275 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
276 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
277 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
278 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
279 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
280 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
281 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
282 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
283 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
284 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
285 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
286 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
287 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
288 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
289 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
290 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
291 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
292 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
293 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
294 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
295 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
296 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
297 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
298 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
299 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
300 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
301 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
302 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
303 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
304 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
305 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
306 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
307 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
308 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
309 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
310 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
311 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
312 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
313 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
314 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
315 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
316 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
317 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
318 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
319 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
320 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
321 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
322 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
323 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
324 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
325 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
326 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
327 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
328 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
329 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
330 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
331 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
332 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
333 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
334 'sbo_M') testoutput_var $1 "sbo_mass" "SBO mass" $2 $refoutp ; yy=$? ;;
335 'sboFW') testoutput_var $1 "sbo_mass_fw" "SBO m-FW" $2 $refoutp ; yy=$? ;;
336 'sboAc') testoutput_var $1 "sbo_zoamc" "SBO AM-C" $2 $refoutp ; yy=$? ;;
337 'sboAp') testoutput_var $1 "sbo_zoamp" "SBO AM-P" $2 $refoutp ; yy=$? ;;
338 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
339 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
340 esac
341 if test $xx = $sVar
342 then allargs="$allargs > $yy <"
343 else allargs="$allargs $yy"
344 fi
345 done
346
347 nbVar=`echo $listVar | awk '{print NF}'`
348 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
349 #-- fill line (up to standard length) with dot:
350 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
351 echo $allargs $adNul
352 else
353 echo $allargs
354 fi
355 # <-- same processing for adjoint & forward test
356 }
357
358 genmakemodel()
359 {
360 # genmakemodel directory
361 if test "x$NOGENMAKE" = xt ; then
362 echo "genmake skipped!"
363 else
364 if test "x$BASH" = x ; then
365 GENMAKE2="../../../tools/genmake2"
366 else
367 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
368 fi
369 (
370 cd $1;
371 command="$GENMAKE2 -ds -m $MAKE"
372 if test "x$MKDEPEND" != x ; then
373 command="$command -makedepend=$MKDEPEND"
374 fi
375 if test $KIND = 4 ; then
376 command="$command -oad -mods=../$code_dir"
377 else
378 command="$command -mods=../$code_dir"
379 fi
380 if test "x$OPTFILE" != xNONE ; then
381 command="$command -optfile=$OPTFILE"
382 fi
383 if test $OptLev = 1 ; then
384 command="$command -ieee"
385 fi
386 if test $OptLev = 0 ; then
387 command="$command -devel"
388 fi
389 if test "x$GSL" = xt ; then
390 command="$command -gsl"
391 fi
392 if test "x$MPI" != x0 ; then
393 command="$command -mpi"
394 fi
395 if test "x$MULTI_THREAD" = xt ; then
396 #- run multi-threaded using OpenMP:
397 command="$command -omp"
398 fi
399 if test "x$USE_R4" = xt ; then
400 command="$command -use_r4"
401 fi
402 if test "x$EXTRFLG" != x ; then
403 command="$command -extra_flag $EXTRFLG"
404 fi
405 if test "x$TS" = xt ; then
406 command="$command -ts"
407 fi
408 if test "x$PAPIS" = xt ; then
409 command="$command -papis"
410 else
411 if test "x$PCLS" = xt ; then
412 command="$command -pcls"
413 fi
414 fi
415 printf 'genmake ... '
416 eval $command > genmake.tr_log 2>&1
417 RETVAL=$?
418 # Reduce the size of the testing emails!
419 head -100 Makefile > $CDIR/Makefile_head
420 if test "x$RETVAL" != x0 ; then
421 tail genmake.tr_log
422 echo "genmakemodel: genmake failed"
423 cp genmake.log genmake_* genmake.tr_log $CDIR
424 return 1
425 else
426 echo "successful"
427 fi
428 )
429 fi
430 }
431
432 makeclean()
433 {
434 # makeclean directory
435 if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
436 if test "x$NOCLEAN" = xt ; then
437 echo "make Clean skipped!"
438 else
439 (
440 cd $1;
441 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
442 if test -r Makefile ; then
443 printf 'clean build-dir: make Clean ... '
444 $MAKE Clean >> make.tr_log 2>&1
445 RETVAL=$?
446 if test "x$RETVAL" != x0 ; then
447 tail make.tr_log
448 echo "makeclean: \"make Clean\" failed"
449 cp make.tr_log genmake.log genmake.tr_log $CDIR
450 return 1
451 fi
452 echo successful
453 else
454 echo ''
455 fi
456 exit 0
457 )
458 fi
459 }
460
461 run_clean()
462 {
463 # run_clean directory
464 if test "x$NOCLEAN" = xt ; then
465 echo "run_clean skipped!"
466 else
467 (
468 cd $1;
469 printf 'clean run-dir ... '
470 # part of what is done after "make clean" when doing "make CLEAN"
471 find . -name "*.meta" -exec rm {} \;
472 find . -name "*.data" -exec rm {} \;
473 find . -name "fort.*" -exec rm {} \;
474 find . -type l -exec rm {} \;
475 #- should remove executable only if sym-link (already done above)
476 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
477 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
478 rm -f *_MIT_CE_000.opt0000 costfunction*0000
479 rm -f oad_cp.[0-9][0-9][0-9].?????
480 rm -rf mnc_test_*
481 echo successful
482 exit 0
483 )
484 fi
485 }
486
487 makedependmodel()
488 {
489 # makedependmodel directory
490 if test "x$NODEPEND" = xt ; then
491 echo "make depend skipped!"
492 else
493 (
494 cd $1;
495 printf 'make depend ... '
496 $MAKE depend >> make.tr_log 2>&1
497 RETVAL=$?
498 if test "x$RETVAL" != x0 ; then
499 tail make.tr_log
500 echo "makedependmodel: make depend failed"
501 cp make.tr_log genmake.log genmake.tr_log $CDIR
502 return 1
503 else
504 echo successful
505 fi
506 )
507 fi
508 }
509
510 makemodel()
511 {
512 # makemodel directory
513 (
514 mk_fail=0
515 if test "x$NOMAKE" = xt ; then
516 cd $1;
517 if test -x $EXECUTABLE ; then
518 echo "make skipped!"
519 else
520 echo "no executable!"
521 mk_fail=3
522 fi
523 else
524 cd $1;
525 if test -r Makefile ; then
526 printf 'make ... '
527 if test "x$REPLMAKE" = x ; then
528 $MAKE $TARG >> make.tr_log 2>&1
529 else
530 $REPLMAKE $TARG >> make.tr_log 2>&1
531 fi
532 RETVAL=$?
533 if test "x$RETVAL" != x0 ; then
534 tail make.tr_log
535 echo failed
536 cp genmake.log genmake.tr_log $CDIR
537 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
538 rm -f $EXECUTABLE
539 mk_fail=1
540 else
541 echo successful
542 fi
543 else
544 echo "no Makefile !"
545 mk_fail=2
546 fi
547 fi
548 if test $KIND = 1 -a -f taf_ftl.log ; then
549 head -1 taf_ftl.log >> $CDIR"/summary.txt"
550 fi
551 if test $KIND = 2 -a -f taf_ad.log ; then
552 head -1 taf_ad.log >> $CDIR"/summary.txt"
553 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
554 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
555 if test -f taf_output ; then
556 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
557 n3er=`grep -c '\*ERROR\* ' taf_output`
558 nerr=`expr $nerr + $n2er + $n3er`
559 fi
560 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
561 >> $CDIR"/summary.txt"
562 fi
563 if test $mk_fail != 0 ; then return $mk_fail ; fi
564 )
565 }
566
567 mk_mpi_size()
568 {
569 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
570 #
571 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
572 # for an MPI build with no more than proc_Nb processors ;
573 # ensure that enough tiles per proc (nSx,nSy) remain for the given
574 # number of threads (nTx,nTy) ;
575 # return the effective number of processors.
576
577 inp=$1
578 out=$2
579 np=$3
580 tx=$4
581 ty=$5
582 tmp=TTT.$$
583
584 # dirX : select with direction to favor in MPI process repartition
585 # dirX=1 : prefer to put more proc in X direction
586 # dirX=0 : prefer to put more proc in Y direction
587 dirX=0
588
589 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
590 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
591 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
592 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
593
594 #- for each direction, assume # of threads is a multiple of total number of tiles
595 nx=$px
596 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
597 nx=`expr $sx \* $px / $tx`
598 if [ $verbose -gt 1 ]; then
599 echo " change px from $px to $nx to accommodate $tx threads"
600 fi
601 fi
602 ny=$py
603 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
604 ny=`expr $sy \* $py / $ty`
605 if [ $verbose -gt 1 ]; then
606 echo " change py from $py to $ny to accommodate $ty threads"
607 fi
608 fi
609 #- find the largest divisor of input_file proc Nb, but not larger than $np
610 pp=0
611 i=1
612 while [ $i -le $nx ] ; do
613 if [ `expr $nx % $i` -eq 0 ] ; then
614 j=1
615 while [ $j -le $ny ] ; do
616 if [ `expr $ny % $j` -eq 0 ] ; then
617 ij=`expr $i \* $j`
618 if [ $ij -gt $pp ] ; then
619 flag=1
620 elif [ $ij -eq $pp ] ; then
621 flag=$dirX
622 else
623 flag=0
624 fi
625 if test $flag = 1 ; then
626 if [ $ij -le $np ] ; then
627 ix=$i ; jy=$j ; pp=$ij
628 #echo " ix,jy= $ix,$jy"
629 fi
630 fi
631 fi
632 j=`expr $j + 1`
633 done
634 fi
635 i=`expr $i + 1`
636 done
637
638 #- create new SIZE.h type file:
639 sx=`expr $sx \* $px / $ix`
640 sy=`expr $sy \* $py / $jy`
641 if [ $verbose -gt 1 ]; then
642 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
643 fi
644 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
645 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
646 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
647 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
648 rm -f $tmp
649 return $pp
650 }
651
652 symlink_mpifiles()
653 {
654 # Put special links so that MPI specific files are used
655 # This MUST be invoked between makeclean and makelinks because
656 # the Makefile will link to non-mpi files by default
657
658 dir=$1
659 code_dir=$2
660 build_dir=$dir/$3
661
662 # These are files that should replace their counter-part when using -mpi
663 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
664
665 for ii in $MPI_FILES ; do
666 i=`echo $ii | sed 's:^\./::'`
667 name=`echo $i | sed 's:_mpi::'`
668 file="../$code_dir/$i"
669 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
670
671 # Is this an MPI run?
672 if test "x$MPI" = x0 ; then
673 # NO: We undo any _mpi symbolically linked files
674 if test -L $build_dir/$name ; then
675 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
676 RETVAL=$?
677 if test "x$RETVAL" = x0 ; then
678 if [ $verbose -gt 1 ]; then
679 echo " Un-linking $name from ../$code_dir" ; fi
680 rm -f $build_dir/$name
681 fi
682 fi
683 else
684 # YES: We symbolically link these files to the build
685 # dir so long as there is no real file in place
686 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
687 RETVAL=$?
688 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
689 if test "x$RETVAL" != x0 ; then
690 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
691 if test ! -r $build_dir/$name ; then
692 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
693 (cd $build_dir; ln -sf $file $name)
694 fi
695 fi
696 fi
697 done
698 }
699
700 linkdata()
701 {
702 # linkdata run_dir input_dir_1 input_dir_2 ...
703 #
704 # symbolically link data files to run directory
705 if test -d $1 ; then
706 (
707 cd $1 ; shift
708 echo 'linkdata from dirs:' $*
709 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
710 for xx in $inpMPI ; do
711 if test -r "../"$1"/"$xx ; then
712 # found 1 _mpi sfx file in 1rst input dir and it is readable
713 yy=`echo $xx | sed 's:\.mpi$::'`
714 if test "x$MPI" = "x0" ; then
715 # not mpi test: remove symbolic link
716 if test -h $yy ; then rm -f $yy ; fi
717 else
718 # mpi test: remove symbolic link & link .mpi sfx file
719 if test -h $yy ; then rm -f $yy ; fi
720 if test ! -r $yy ; then
721 ln -sf "../"$1"/"$xx $yy ;
722 printf " $xx" 1>&2
723 fi
724 fi
725 fi
726 done
727 if test -r "../"$1"/eedata.mth" ; then
728 # found eedata.mth in 1rst input dir and it is readable
729 if test "x$MULTI_THREAD" = "xt" ; then
730 # multi-threaded test: remove symbolic link & link eedata.mth
731 if test -h eedata ; then rm -f eedata ; fi
732 if test ! -r eedata ; then
733 ln -sf "../"$1"/eedata.mth" eedata ;
734 printf ' eedata.mth' 1>&2
735 fi
736 else
737 # not multi-threaded test: remove eedata symbolic link
738 if test -h eedata ; then rm -f eedata ; fi
739 fi
740 fi
741 prevDir='NONE'
742 for ldir in $* ; do
743 if test -d "../"$ldir -a $ldir != $prevDir ; then
744 printf " ldir=${ldir}:" 1>&2
745 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
746 for i in $files ; do
747 if test ! -d "../"$ldir/$i ; then
748 if test ! -r $i ; then
749 printf ' '$i 1>&2
750 ln -sf "../"$ldir"/"$i $i
751 fi
752 fi
753 done
754 printf ' ;' 1>&2
755 if test -x "../"$ldir"/"prepare_run ; then
756 "../"$ldir"/"prepare_run 1>&2
757 else
758 echo '' 1>&2
759 fi
760 fi
761 prevDir=$ldir
762 done
763 )
764 fi
765 }
766
767 runmodel()
768 {
769 # runmodel directory
770 #
771 # runs $COMMAND in "directory"
772 # (where "$COMMAND" is relative to "directory")
773 (
774 cd $1
775 printf 'runmodel in %s ... ' $1
776 if test "x$MPI" != x0 ; then
777 #- adjust the MPI run command with the right number of Procs
778 #echo '' ; echo " COMMAND='$COMMAND'"
779 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
780 if test "x$MPI_MFILE" != x ; then
781 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
782 fi
783 #echo " COMMAND='$COMMAND'"
784 fi
785 if test -L $EXECUTABLE ; then
786 if test -x "../"$builddir"/"$EXECUTABLE ; then
787 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
788 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
789 else rm -f $EXECUTABLE
790 fi
791 fi
792 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
793 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
794 ln -sf "../"$builddir"/"$EXECUTABLE .
795 fi
796 if test ! -x $EXECUTABLE ; then
797 rm -f $RUNLOG ; touch $RUNLOG
798 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
799 echo " no executable:" $EXECUTABLE >> $RUNLOG
800 RETVAL=8
801 ENDVAL=-1
802 else
803 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
804 # output do not exist or is older than executable:
805 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
806 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
807 #- Divided Adjoint Run:
808 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
809 if test $KIND = 2 -a -f run_ADM_DIVA ; then
810 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
811 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
812 eval "let $adm_diva_nb"
813 if [ $add_DIVA_runs -ge 1 ] ; then
814 rm -f costf* divided.ctrl snapshot*
815 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
816 for ii in `seq 1 $add_DIVA_runs` ; do
817 ( eval $COMMAND ) >> $RUNLOG 2>&1
818 echo " additional DIVA run # $ii : done" >> $RUNLOG
819 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
820 done
821 fi
822 fi
823 #- special DIVA processing ends here
824 ( eval $COMMAND ) >> $RUNLOG 2>&1
825 RETVAL=$?
826 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
827 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
828 find . -name "*.meta" -exec rm {} \;
829 find . -name "*.data" -exec rm {} \;
830 rm -rf mnc_test_*
831 fi
832 else
833 RETVAL=0
834 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
835 touch $RUNLOG
836 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
837 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
838 fi
839 fi
840 rm -f run.log_tmp
841 #- in all cases where OutputFile exists, report SIZE and time
842 if test -f $OUTPUTFILE ; then
843 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
844 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
845 grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
846 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
847 fi
848 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
849 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
850 echo successful
851 printf '=> output from running in %s :\n' $1 1>&2
852 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
853 return 0
854 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
855 #-- for some weird cases (run is finihed but with error code)
856 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
857 printf '=> output from running in %s :\n' $1 1>&2
858 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
859 return 0
860 else
861 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
862 printf '=> output from running in %s :\n' $1 1>&2
863 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
864 cp $RUNLOG $CDIR"/"$RUNLOG
865 return 1
866 fi
867 )
868 }
869
870 createcodelet()
871 {
872 # create codelet for comparing model output
873
874 printf "creating the comparison code (using CC=$CC)... "
875 cat > tr_cmpnum.c <<EOF
876 #include <stdio.h>
877 #include <math.h>
878 int main( int argc, char** argv ) {
879 int linnum,cmplin,best,lncnt;
880 double a,b,abave,relerr;
881 best = -22;
882 lncnt = 0;
883 while( 1 & ( (lncnt+=1) < 999 ) ) {
884 scanf("%d", &linnum);
885 if (linnum == -1) break;
886 scanf("%lf", &a); scanf("%lf", &b);
887 abave = 0.5*(fabs(a)+fabs(b));
888 if ( abave == abave ) {
889 if (abave > 0.0) {
890 relerr=fabs(a-b)/abave;
891 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
892 else { cmplin = -16 ; }
893 best = (best > cmplin) ? best : cmplin; }
894 else { cmplin = -22 ; }
895 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
896 }
897 else {
898 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
899 break; }
900 }
901 if (lncnt == 999) best=-29;
902 if (linnum != -1) best=-99;
903 printf("%d\n", -best);
904 return 0;
905 }
906 EOF
907 $CC -o tr_cmpnum tr_cmpnum.c -lm
908
909 if [ -x ./tr_cmpnum ]; then
910 echo "OK"
911 return 0
912 else
913 echo
914 echo "ERROR: failed to compile comparison code -- please specify"
915 echo " a C compiler using the CC environment variable."
916 exit 1
917 fi
918 }
919
920 formatresults()
921 {
922 # formatresults expt genmake depend make run results*
923
924 nm=$1
925 printf '%s %s %s %s' $2 $3 $4 $5
926 shift; shift; shift; shift; shift;
927 listPrt=$@
928 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
929 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
930 printf '%3s' $listPrt
931 # line below does not work on hp-ux_ia64 : do those substitutions later on
932 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
933
934 if [ $xx = '..' ]; then
935 printf ' N/O '
936 elif [ $xx = '--' ]; then
937 printf ' N/O '
938 elif [ $xx = 99 ]; then
939 printf ' N/O '
940 else
941 if [ $xx -ge $MATCH_CRIT ]; then
942 printf ' pass'
943 else
944 printf ' FAIL'
945 fi
946 fi
947 printf ' %s' $nm
948 if test $KIND = 2 ; then
949 #-- apppend taf repport summary:
950 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
951 if test $tafrep = 1 ; then
952 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
953 fi
954 fi
955 printf '\n'
956
957 }
958
959 scandirs()
960 {
961 if [ $# -eq 1 ]; then
962 for arg in * ; do
963 #test -f $arg/$1 && echo $arg
964 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
965 done
966 else
967 echo $*
968 fi
969 }
970
971
972 check_eedata()
973 {
974 # check_eedata eedata size.h
975 if [ $# -eq 2 ] ; then
976 if test -f $1 -a -f $2 ; then
977 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
978 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
979 if test "x$nx" = x ; then
980 rx=10
981 else
982 rx=`expr $sx % $nx`
983 fi
984 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
985 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
986 if test "x$ny" = x ; then
987 ry=20
988 else
989 ry=`expr $sy % $ny`
990 fi
991 echo `expr $rx + $ry`
992 else
993 echo '-1'
994 fi
995 elif [ $# -eq 1 ] ; then
996 if test -f $1 ; then
997 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
998 if test "x$nx" = x ; then nx=1 ; fi
999 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1000 if test "x$ny" = x ; then ny=1 ; fi
1001 #echo $nx $ny
1002 echo $nx
1003 else
1004 echo '-1'
1005 fi
1006 else
1007 echo '-2'
1008 fi
1009
1010 }
1011
1012 ###############################################################################
1013
1014
1015 # Default properties
1016 debug=0
1017 verbose=1
1018 NBLINES_MKLOG=16000
1019
1020 OptLev=1
1021 GSL=f
1022
1023 CLEANUP=f
1024 NORUN=f
1025 QUICK=f
1026 NOMAKE=f
1027 NOGENMAKE=f
1028 NOCLEAN=f
1029 NODEPEND=f
1030 POSTCLEAN=0
1031
1032 BASH=
1033 OPTFILE=NONE
1034 ADDRESSES=
1035 TESTDIRS=
1036 SKIPDIRS=
1037 MPACKDIR="../tools/mpack-1.6"
1038 HAVE_MPACK=
1039 MPACK=
1040 SENDCMD=
1041 SAVDIR='.'
1042 COMMAND=
1043 MKDEPEND=
1044 if test "x$MAKE" = x ; then
1045 MAKE=make
1046 fi
1047 REPLMAKE=
1048 if test "x$CC" = x ; then
1049 CC=cc
1050 fi
1051 JOBS=
1052 TARG=
1053 MPI=0
1054 MPI_MFILE=
1055 MULTI_THREAD=f
1056 OUTDIR=
1057 DELDIR=
1058 USE_R4=
1059 EXTRFLG=
1060
1061 #- type of testing (KIND):
1062 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1063 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1064 KIND=0
1065
1066 # list of pTracers to check for monitor output
1067 PTRACERS_NUM="1 2 3 4 5"
1068
1069 MATCH_CRIT=10
1070
1071 printf "parsing options... "
1072
1073 ac_prev=
1074 for ac_option ; do
1075
1076 # If the previous option needs an argument, assign it.
1077 if test -n "$ac_prev"; then
1078 eval "$ac_prev=\$ac_option"
1079 ac_prev=
1080 continue
1081 fi
1082
1083 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1084
1085 case $ac_option in
1086
1087 -help | --help | -h | --h) usage ;;
1088
1089 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1090 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1091
1092 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1093 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1094 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1095 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1096
1097 -send | --send ) ac_prev=SENDCMD ;;
1098 -send=* | --send=* ) SENDCMD=$ac_optarg ;;
1099 -savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
1100 -savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
1101
1102 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1103 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1104 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1105 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1106
1107 -bash | --bash | -b | --b) ac_prev=BASH ;;
1108 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1109
1110 -command | --command | -c | --c) ac_prev=COMMAND ;;
1111 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1112
1113 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1114 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1115
1116 -make | --make | -m | --m) ac_prev=MAKE ;;
1117 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1118
1119 -repl_mk | --repl_mk ) ac_prev=REPLMAKE ;;
1120 -repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;;
1121
1122 -odir | --odir) ac_prev=OUTDIR ;;
1123 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1124
1125 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1126 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1127
1128 -match | --match ) ac_prev=MATCH_CRIT ;;
1129 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1130
1131 -j | --j) ac_prev=JOBS ;;
1132 -j=* | --j=*) JOBS=$ac_optarg ;;
1133
1134 -ef | --ef) ac_prev=EXTRFLG ;;
1135 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1136
1137 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1138
1139 -norun | --norun | -nr | --nr) NORUN=t ;;
1140 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1141 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1142 -quick | --quick | -q | --q) QUICK=t ;;
1143 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1144 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1145 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1146
1147 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1148 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1149
1150 -mpi | --mpi) MPI=2 ;;
1151 -MPI | --MPI) ac_prev=MPI ;;
1152 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1153
1154 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1155 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1156
1157 -mth) MULTI_THREAD=t ;;
1158
1159 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1160 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1161 fi ;;
1162 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1163 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1164 fi ;;
1165 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1166 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1167 fi ;;
1168
1169 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1170 printf " ... " ;;
1171 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1172 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1173 -fast) OptLev=`expr $OptLev \* 2` ;;
1174 -devel) OptLev=0 ;;
1175 -gsl) GSL=t ;;
1176
1177 -verbose) verbose=2 ;;
1178 -debug) debug=1 ;;
1179 -quiet) verbose=0 ;;
1180
1181 -deldir | -dd) DELDIR=t ;;
1182
1183 -use_r4|-ur4) USE_R4=t ;;
1184
1185 -ts) TS=t;;
1186 -papis) PAPIS=t;;
1187 -pcls) PCL=t;;
1188
1189 -*) echo "Error: unrecognized option: "$ac_option
1190 usage ;;
1191 *) echo "Error: unrecognized argument: "$ac_option
1192 usage ;;
1193
1194 esac
1195
1196 done
1197
1198 if test "x$QUICK" = xt ; then
1199 NOGENMAKE=t
1200 NOCLEAN=t
1201 NODEPEND=t
1202 fi
1203
1204 #- check length of MPI machine file:
1205 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1206 if test -r $MPI_MFILE ; then
1207 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1208 if [ $nl -lt $MPI ] ; then
1209 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1210 usage
1211 fi
1212 if [ $verbose -gt 1 ]; then
1213 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1214 fi
1215 else
1216 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1217 usage
1218 fi
1219 fi
1220
1221 #- setting for forward or ADM testing
1222 if test $KIND = 1 ; then
1223 TARG=ftlall
1224 code_dir=code_ad
1225 inputdir=input_ad
1226 ref_outp="output_tlm.txt"
1227 EXECUTABLE="mitgcmuv_ftl"
1228 elif test $KIND = 2 ; then
1229 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1230 code_dir=code_ad
1231 inputdir=input_ad
1232 ref_outp="output_adm.txt"
1233 EXECUTABLE="mitgcmuv_ad"
1234 elif test $KIND = 4 ; then
1235 TARG=adAll
1236 code_dir=code_oad
1237 inputdir=input_oad
1238 ref_outp="output_oadm.txt"
1239 EXECUTABLE="mitgcmuv_ad"
1240 else
1241 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1242 code_dir=code
1243 inputdir=input
1244 ref_outp="output.txt"
1245 EXECUTABLE="mitgcmuv"
1246 fi
1247
1248 xx=`echo $TESTDIRS | awk '{print $1}'`
1249 if test "x$TESTDIRS" = x ; then
1250 LIST=`scandirs results/$ref_outp`
1251 elif test $xx = 'start_from' ; then
1252 xx=`echo $TESTDIRS | awk '{print $2}'`
1253 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1254 else
1255 #- expand group of experiments:
1256 LIST=" "
1257 for xx in $TESTDIRS
1258 do
1259 case $xx in
1260 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1261 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1262 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1263 ;;
1264 'tutorials')
1265 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1266 *) LIST=${LIST}" "$xx ;;
1267 esac
1268 done
1269 fi
1270 #echo 'LIST='${LIST}'<'
1271 #- skip dirs, remove duplicate and non-directory:
1272 TESTDIRS=" "
1273 count=0
1274 for xx in $LIST
1275 do
1276 yy=`echo $SKIPDIRS | grep -c $xx`
1277 if test $yy = 0 ; then
1278 if test -d $xx ; then
1279 yy=`echo $TESTDIRS | grep -c $xx`
1280 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1281 else count=1 ;
1282 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1283 fi
1284 else
1285 if test $count = 1 ; then echo -n ", \"$xx\""
1286 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1287 fi
1288 fi
1289 done
1290 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1291 #echo 'TESTDIRS='${TESTDIRS}'<'
1292
1293 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1294 OPTFILE=$MITGCM_OF
1295 fi
1296
1297 LOC_MFILE='tr_mpi_mfile'
1298 RUNLOG="run.tr_log"
1299 if test "x$MPI" = x0 ; then
1300 OUTPUTFILE=$ref_outp
1301 if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi
1302 else
1303 OUTPUTFILE="STDOUT.0000"
1304 if test "x$COMMAND" = x ; then COMMAND="mpirun -v -np TR_NPROC ./$EXECUTABLE" ; fi
1305 fi
1306
1307 echo "OK (COMMAND='$COMMAND')"
1308
1309 TMP=./tr_$$
1310 #- try to put temporary files in system-local /tmp dir
1311 #TMP=/tmp/tr_$$
1312 #touch $TMP ; retVal=$?
1313 #if [ $retVal -eq 0 ] ; then
1314 # if test ! -r $TMP ; then TMP=./tr_$$ ; fi
1315 #else
1316 # TMP=./tr_$$
1317 #fi
1318 #rm -f $TMP
1319 #if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
1320
1321 # set the Default List of output variables to be checked:
1322 # (use default or load experiment-specific list from file "tr_checklist")
1323 # content : 1rst = main variable used to decide if it pass or FAIL
1324 # others = number of matching digits to be printed in summary.txt
1325 if test $KIND = 1 ; then
1326 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1327 EMPTY_RESULTS='.. .. ..'
1328 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1329 elif test $KIND = 2 -o $KIND = 4 ; then
1330 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1331 EMPTY_RESULTS='.. .. ..'
1332 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1333 else
1334 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1335 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1336 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1337 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1338 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1339 fi
1340
1341 # create the FORTRAN comparison code
1342 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1343 echo "skipping comparison code build"
1344 else
1345 createcodelet
1346 fi
1347
1348 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1349 if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
1350 echo "skipping mpack build"
1351 else
1352 build_mpack
1353 if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
1354 fi
1355
1356 # Create a uniquely named directory to store results
1357 CMDLINE=$0
1358 for xx in "$@" ; do nw=`echo $xx | wc -w`
1359 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1360 nb=`echo $xx | grep -c '='`
1361 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1362 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1363 CMDLINE="$CMDLINE $yy" ; fi
1364 fi
1365 done
1366 MACH=`hostname`
1367 UNAMEA=`uname -a`
1368 DATE=`date +%Y%m%d`
1369 BASE="tr_"$MACH"_"$DATE"_"
1370 if test "x$OUTDIR" != x ; then
1371 BASE="tr_"$OUTDIR"_"$DATE"_"
1372 else
1373 #short_name=`hostname -s | tr '[:upper:]' '[:lower:]'`
1374 # hostname -s is not universal (does work on AIX system)
1375 short_name=`hostname | sed 's/\..*$//' | tr '[:upper:]' '[:lower:]'`
1376
1377 BASE="tr_"$short_name"_"$DATE"_"
1378 fi
1379 DNUM=0
1380 DRESULTS="$BASE$DNUM"
1381 while test -e $DRESULTS ; do
1382 DNUM=$(( $DNUM + 1 ))
1383 DRESULTS="$BASE$DNUM"
1384 done
1385 mkdir $DRESULTS
1386 RETVAL=$?
1387 if test "x$RETVAL" != x0 ; then
1388 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1389 exit 1
1390 fi
1391 SUMMARY="$DRESULTS/summary.txt"
1392 start_date=`date`
1393 echo $start_date > $SUMMARY
1394 echo 'run:' $CMDLINE >> $SUMMARY
1395 echo 'on :' $UNAMEA >> $SUMMARY
1396
1397 of_path=
1398 if test "x$OPTFILE" != xNONE ; then
1399 if test -r $OPTFILE ; then
1400 # get the path
1401 path=${OPTFILE%/*}
1402 if test "x$path" = x ; then
1403 of_path=`pwd`
1404 else
1405 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1406 fi
1407 file=${OPTFILE##*/}
1408 OPTFILE=$of_path/$file
1409 cp $OPTFILE $DRESULTS
1410 echo >> $SUMMARY
1411 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1412 else
1413 echo | tee -a $SUMMARY
1414 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1415 exit 1
1416 fi
1417 else
1418 echo >> $SUMMARY
1419 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1420 #-note: to be filled later after 1rst run
1421 fi
1422 echo
1423 echo >> $SUMMARY
1424 if test $KIND = 0 ; then
1425 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1426 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1427 line_1="G D M c m s m s m s m s"
1428 line_2="e p a R g m m e . m m e . m m e . m m e ."
1429 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1430 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1431 for ii in $PTRACERS_NUM ; do
1432 line_0="$line_0 --PTR 0"$ii"--"
1433 line_1="$line_1 m s"
1434 line_2="$line_2 m m e ."
1435 line_3="$line_3 i a a d"
1436 line_4="$line_4 n x n ."
1437 done
1438 else
1439 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1440 if test $KIND = 1 ; then
1441 #echo "TANGLIN=true" >> $SUMMARY
1442 echo "TangLin generated by TAF" >> $SUMMARY
1443 elif test $KIND = 3 ; then
1444 echo "TangLin generated by OpenAD" >> $SUMMARY
1445 elif test $KIND = 2 ; then
1446 #echo "ADJOINT=true" >> $SUMMARY
1447 echo "Adjoint generated by TAF" >> $SUMMARY
1448 else
1449 echo "Adjoint generated by OpenAD" >> $SUMMARY
1450 fi
1451 if test $KIND = 1 -o $KIND = 3 ; then
1452 line_1="G D M C T F"
1453 line_2="e p a R o L D"
1454 else
1455 line_1="G D M C A F"
1456 line_2="e p a R o d D"
1457 fi
1458 line_3="n n k u s G G"
1459 line_4="2 d e n t r r"
1460 echo >> $SUMMARY
1461 fi
1462 if test "x$CLEANUP" != xt ; then
1463 echo "$line_0" | tee -a $SUMMARY
1464 echo "$line_1" | tee -a $SUMMARY
1465 echo "$line_2" | tee -a $SUMMARY
1466 echo "$line_3" | tee -a $SUMMARY
1467 echo "$line_4" | tee -a $SUMMARY
1468 echo "" | tee -a $SUMMARY
1469 fi
1470 echo "-------------------------------------------------------------------------------"
1471
1472 # ...and each test directory...
1473 for dir in $TESTDIRS ; do
1474
1475 # set builddir & rundir:
1476 builddir="build"
1477 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1478 rundir="run"
1479 pfxdir="tr_$rundir"
1480 if test ! -d $dir/$rundir ; then
1481 rundir=$builddir
1482 fi
1483 CODE_DIR=$dir/$code_dir
1484 BUILD_DIR=$dir/$builddir
1485
1486 # Cleanup only!
1487 if test "x$CLEANUP" = xt ; then
1488 echo -n ' --- dir:' $BUILD_DIR ': '
1489 makeclean $BUILD_DIR
1490 ( cd $BUILD_DIR
1491 rm -f $EXECUTABLE *.bak
1492 rm -f genmake_state genmake_*optfile genmake.log
1493 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1494 rm -rf mpi_headers
1495 )
1496 if test -d $dir/$rundir/CVS ; then
1497 echo -n ' --- dir:' $dir/$rundir ': '
1498 run_clean $dir/$rundir
1499 fi
1500 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1501 ttd=`echo $trdir | wc -w`
1502 if test $ttd != 0 ; then
1503 echo ' --- rm dir:' $trdir
1504 ( cd $dir ; rm -rf $trdir )
1505 fi
1506 continue
1507 fi
1508
1509 # Verify that the testdir exists and contains previous
1510 # results in the correct location--or skip this directory!
1511 fout=$dir"/results/"$ref_outp
1512 #if test ! -r $fout ; then
1513 if test ! -r $fout -a ! -r ${fout}.gz ; then
1514 echo "can't read \"$fout\" -- skipping $dir"
1515 continue
1516 fi
1517
1518 # Check for specific files for particular type of run
1519
1520 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1521 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1522 continue
1523 fi
1524 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1525 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1526 continue
1527 fi
1528
1529 if test "x$MPI" != "x0" ; then
1530 ntx=1 ; nty=1
1531 if test "x$MULTI_THREAD" = "xt" ; then
1532 ff=$dir"/input/eedata.mth"
1533 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1534 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1535 if test "x$ntx" = x ; then ntx=1 ; fi
1536 if test "x$nty" = x ; then nty=1 ; fi
1537 fi
1538 #- create new SIZE.h with no more than '$MPI' Procs
1539 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1540 LOC_NPROC=$?
1541 ( cd $BUILD_DIR
1542 if test -r SIZE.h.mpi ; then
1543 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1544 else RETVAL=1
1545 fi
1546 if test "x$RETVAL" = x0 ; then
1547 rm -f tr_size.mpi
1548 else
1549 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1550 fi
1551 )
1552 if test "x$MPI_MFILE" != x ; then
1553 #- create new MPI machine-file with the right number of Procs
1554 rm -f $LOC_MFILE
1555 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1556 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1557 if [ $nl -lt $LOC_NPROC ] ; then
1558 rm -f $LOC_MFILE
1559 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1560 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1561 fi
1562 if [ $verbose -gt 1 ]; then
1563 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1564 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1565 fi
1566 fi
1567 if test "x$MULTI_THREAD" = "xt" ; then
1568 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1569 if test $retv != 0 ; then
1570 echo "input/eedata.mth tiling misfit -- skipping $dir"
1571 continue
1572 fi
1573 fi
1574 fi
1575
1576 # Check whether there are "extra runs" for this testdir
1577 extra_runs=
1578 if test "x$NORUN" = xf ; then
1579 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1580 fi
1581 #echo "ex_run_dirs='$ex_run_dirs'"
1582 for exd in $ex_run_dirs ; do
1583 name=`echo $exd | sed -e "s/$inputdir\.//"`
1584 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1585 outf="$dir/results/$refExOut"
1586 if test -r $outf -o -r ${outf}.gz ; then
1587 if test "x$MULTI_THREAD" = "xt" ; then
1588 if test -r $dir"/"$exd"/eedata.mth" ; then
1589 if test "x$MPI" = "x0" ; then
1590 extra_runs="$extra_runs $name"
1591 else
1592 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1593 if test $retv = 0 ; then
1594 extra_runs="$extra_runs $name"
1595 else
1596 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1597 fi
1598 fi
1599 #else echo $dir"/"$exd"/eedata.mth: not found"
1600 fi
1601 else
1602 extra_runs="$extra_runs $name"
1603 fi
1604 fi
1605 done
1606
1607 echo
1608 if test "x$extra_runs" = "x" ; then
1609 echo "Experiment: $dir"
1610 else
1611 echo "Experiment: $dir ; extra_runs=$extra_runs"
1612 fi
1613 echo
1614 unset genmake makedepend make run
1615 results=$EMPTY_RESULTS
1616
1617 # Create an output dir & summary.txt file for each tested experiment (tdir)
1618 locDIR=$DRESULTS"/"$dir
1619 mkdir $locDIR
1620 #- report to this experiment local summary file ---
1621 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1622 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1623 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1624 CDIR=`pwd`"/$locDIR"
1625
1626 if test "x$NORUN" = xt ; then
1627 run=N
1628 genmakemodel $dir/$builddir && genmake=Y \
1629 && makeclean $dir/$builddir \
1630 && symlink_mpifiles $dir $code_dir $builddir \
1631 && makedependmodel $dir/$builddir && makedepend=Y \
1632 && makemodel $dir/$builddir && make=Y
1633 else
1634 genmakemodel $dir/$builddir && genmake=Y \
1635 && makeclean $dir/$builddir \
1636 && symlink_mpifiles $dir $code_dir $builddir \
1637 && makedependmodel $dir/$builddir && makedepend=Y \
1638 && makemodel $dir/$builddir && make=Y \
1639 && run_clean $dir/$rundir \
1640 && linkdata $dir/$rundir $inputdir \
1641 && runmodel $dir/$rundir && run=Y \
1642 && results=`testoutput_run $dir $rundir $ref_outp`
1643 fi
1644 #echo "results='$results'"
1645
1646 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1647 echo 1>&2
1648 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1649 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1650
1651 for ex in $extra_runs ; do
1652 unset run
1653 results=$EMPTY_RESULTS
1654 # reference output file
1655 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1656 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1657 locDIR=$DRESULTS"/"$dir"."$ex
1658 mkdir $locDIR
1659 #- report to this experiment local summary file ---
1660 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1661 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1662 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1663 CDIR=`pwd`"/$locDIR"
1664 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1665 run_clean $dir/$pfxdir.$ex
1666 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1667 runmodel $dir/$pfxdir.$ex && run=Y \
1668 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1669 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1670 echo 1>&2
1671 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1672 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1673 if test "x$POSTCLEAN" = x2 ; then
1674 run_clean $dir/$pfxdir.$ex
1675 fi
1676 done
1677
1678 if test ! -f $DRESULTS"/"genmake_state ; then
1679 if test -f $dir/$builddir/Makefile ; then
1680 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1681 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1682 # sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1683 # bsd-sed cannot do the above code
1684 cat $dir/$builddir/Makefile | \
1685 sed -n '/^# executed by:/{N
1686 p
1687 }' >> $DRESULTS/genmake_state
1688 echo " $mkOpt" >> $DRESULTS/genmake_state
1689 if test "x$OPTFILE" = xNONE ; then
1690 eval $mkOpt
1691 # sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1692 # $SUMMARY > tmp.tr_log
1693 # bsd-sed requires a newline after "a\":
1694 sed "/^No \"OPTFILE\" was specified ; genmake2/a\\
1695 OPTFILE=${OPTFILE}" $SUMMARY > tmp.tr_log
1696 RETVAL=$?
1697 if test "x$RETVAL" = x0 ; then
1698 cp -f tmp.tr_log $SUMMARY
1699 fi
1700 rm -f tmp.tr_log
1701 fi
1702 gmkLog=$dir/$builddir/genmake.log
1703 if test -r $gmkLog ; then
1704 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1705 RETVAL=$?
1706 if test "x$RETVAL" = x0 ; then
1707 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1708 echo "extract compiler version:" >> $DRESULTS/genmake_state
1709 sed -n '/Get compiler version/,/<-- compiler version/p' \
1710 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1711 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1712 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1713 >> $DRESULTS/genmake_state
1714 rm -f tmp.tr_log
1715 fi
1716 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1717 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1718 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1719 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1720 fi
1721 fi
1722 fi
1723 #postclean $dir/$builddir
1724 if test "x$POSTCLEAN" = x2 ; then
1725 makeclean $dir/$builddir \
1726 && run_clean $dir/$rundir
1727 fi
1728 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1729
1730 echo "-------------------------------------------------------------------------------"
1731
1732 done
1733
1734 printf "Start time: " >> $SUMMARY
1735 echo "$start_date" >> $SUMMARY
1736 printf "End time: " >> $SUMMARY
1737 date >> $SUMMARY
1738
1739 # If addresses were supplied and mpack built successfully, then try
1740 # to send email using mpack.
1741 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1742 echo "No results email was sent."
1743 else
1744 if test "x$SENDCMD" != x ; then
1745 if [ $verbose -gt 1 ]; then
1746 echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
1747 fi
1748 tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
1749 && gzip ${SAVDIR}/${DRESULTS}".tar" \
1750 && $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
1751 RETVAL=$?
1752 if test "x$RETVAL" != x0 ; then
1753 echo
1754 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1755 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1756 echo " summary of results from the directory \"$DRESULTS\"."
1757 echo
1758 else
1759 echo
1760 echo "An email containing results was sent to the following addresses:"
1761 echo " \"$ADDRESSES\""
1762 echo
1763 test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
1764 test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
1765 fi
1766 fi
1767 fi
1768
1769 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1770 rm -f tr_cmpnum.c tr_cmpnum
1771 fi
1772
1773 if test "x$CLEANUP" != xt ; then
1774 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1775 if test -e tr_out.txt ; then
1776 mv tr_out.txt tr_out.txt.old
1777 fi
1778 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1779 fi
1780
1781 if test "x$DELDIR" = xt ; then
1782 rm -rf $DRESULTS
1783 fi
1784 echo "======== End of testreport execution ========"
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