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Revision 1.196 - (show annotations) (download)
Sat Jan 25 18:29:03 2014 UTC (10 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint64x, checkpoint64u, checkpoint64t, checkpoint64w, checkpoint64v
Changes since 1.195: +4 -6 lines
OpenAD test: add "-oad" option to genmake2 command and use default
 AD optfile (which has been changed accordingly in genmake2).

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.195 2013/09/22 23:35:56 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " ---- type of test : ----"
15 echo " (-tlm) perform a Tangent Linear run"
16 echo " (-adm|-ad) perform an adjoint run"
17 echo " (-oad) perform an OpenAD adjoint run"
18 echo " (-mth) run multi-threaded (using eedata.mth)"
19 echo " (-mpi) use MPI to compile and run on 2 processors"
20 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
21 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
22 echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)"
23 echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'"
24 echo " ---- testing options : ----"
25 echo " (-optfile|-of) STRING list of optfiles to use"
26 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
27 echo " DEF=off => use IEEE numerics option (if available)"
28 echo " (-devel) use optfile developement flags (if available)"
29 echo " (-gsl) compile with \"-gsl\" flag"
30 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
31 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
32 echo " (recognized groups: basic, tutorials)"
33 echo " (DEF=\"\" which test all)"
34 echo " (if list= 'start_from THIS_EXP' then"
35 echo " test THIS_EXP + all the following)"
36 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
37 echo " (DEF=\"\" which test all)"
38 echo " (-ts) provide timing information per timestep"
39 echo " (-papis) provide MFlop/s per timestep using PAPI"
40 echo " (-pcls) provide MFlop/s per timestep using PCL"
41 echo " ---- system options : ----"
42 echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
43 echo " (DEF=\"\" for \"bash\")"
44 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
45 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
46 echo " (-make|-m) STRING command to use for \"make\""
47 echo " (DEF=\"make\")"
48 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
49 echo " ---- output options : ----"
50 echo " (-match) NUMBER Matching Criteria (number of digits)"
51 echo " (DEF=\"$MATCH_CRIT\")"
52 echo " (-odir) STRING used to build output directory name"
53 echo " (DEF=\"hostname\")"
54 echo " (-addr|-a) STRING list of email recipients"
55 echo " (DEF=\"\" no email is sent)"
56 echo " (-send) STRING sending command (instead of using mpack)"
57 echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
58 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
59 echo " (DEF=\"../tools/mpack-1.6\")"
60 echo " -- do only some parts: --"
61 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
62 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
63 echo " (-obj) only produces objects (=norun & no executable)"
64 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
65 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
66 echo " (-nogenmake|-ng) skip the genmake stage"
67 echo " (-noclean|-nc) skip the \"make clean\" stage"
68 echo " (-nodepend|-nd) skip the \"make depend\" stage"
69 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
70 echo " (-deloutp|-do) delete output files after successful run"
71 echo " (-deldir|-dd) on success, delete the output directory"
72 echo
73 echo "and where STRING can be a whitespace-delimited list"
74 echo "such as:"
75 echo
76 echo " -t 'exp0 exp2 exp3' "
77 echo " -addr='abc@123.com testing@home.org'"
78 echo
79 echo "provided that the expression is properly quoted within the current"
80 echo "shell (note the use of single quotes to protect white space)."
81 echo
82 exit 1
83 }
84
85 # build the mpack utility
86 build_mpack()
87 {
88 printf "building the mpack utility... "
89 MPACK="$MPACKDIR/mpack"
90 if test ! -x $MPACK ; then
91 if test ! -d $MPACKDIR ; then
92 echo
93 echo "Error: can't find \"$MPACKDIR\""
94 echo " are you sure this program is being run in the correct "
95 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
96 echo
97 HAVE_MPACK=f
98 fi
99 if test "x$CC" = x ; then
100 export CC=cc
101 fi
102 printf "building mpack (using CC=$CC)... "
103 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
104 RETVAL=$?
105 if test "x$RETVAL" != x0 ; then
106 echo
107 echo "Error building the mpack tools at: $MPACK_DIR"
108 echo
109 HAVE_MPACK=f
110 else
111 rm -f tr_build_mpack.out
112 HAVE_MPACK=t
113 echo "done"
114 fi
115 else
116 HAVE_MPACK=t
117 echo "already exist"
118 fi
119 }
120
121 testoutput_var()
122 {
123 # testoutput_var dir s1 label subdir reference_output
124 #
125 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
126 # with same output from reference file $dir/$reference_output
127 # using search strings s1 and text label
128
129 if [ $debug -gt 0 ]; then
130 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
131 fi
132 if [ -r $1/$4/$OUTPUTFILE ]; then
133 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > ${TMP}a.txt
134 lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
135 if [ $lncntA -lt 2 ]; then
136 if [ $verbose -gt 0 ]; then
137 echo Not enough lines of output when searching for "$2" 1>&2
138 fi
139 rm -f ${TMP}a.txt ; return 99
140 fi
141 else
142 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
143 return 99
144 fi
145 if [ $debug -gt 0 ]; then
146 echo testoutput_var: grep "$2" $1/$5 1>&2
147 fi
148 grep "$2" $1/$5 | sed 's/.*=//' | cat -n > ${TMP}b.txt
149 lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
150 if [ $lncntB -lt 2 ]; then
151 if [ $verbose -gt 0 ]; then
152 echo Not enough lines of output when searching for "$2" 1>&2
153 fi
154 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
155 fi
156 if [ $lncntA -ne $lncntB ]; then
157 if [ $verbose -gt 0 ]; then
158 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
159 fi
160 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
161 fi
162 has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
163 if [ $has_nan -gt 0 ] ; then
164 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
165 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
166 fi
167 has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
168 if [ $has_inf -gt 0 ] ; then
169 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
170 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
171 fi
172 if [ $debug -gt 0 ]; then
173 echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
174 fi
175 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
176 join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
177 if [ $debug -gt 0 ]; then
178 echo testoutput_var: compare_lines 1>&2
179 fi
180 if [ $verbose -gt 1 ]; then
181 cat ${TMP}c.txt 1>&2
182 fi
183 echo "-1" >> ${TMP}c.txt
184 digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
185 if [ $digits_of_similarity -eq 99 ]; then
186 if [ $verbose -gt 0 ]; then
187 echo testoutput_var: No comparison was available for \"$3\" 1>&2
188 fi
189 digits_of_similarity=99
190 else
191 if [ $verbose -gt 0 ]; then
192 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
193 fi
194 fi
195 rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
196
197 return $digits_of_similarity
198 }
199
200 testoutput_run()
201 {
202 # testoutput_run directory subdir reference_output
203 #
204 # test output from 1 run in "directory"
205 # --> same processing for adjoint & forward test
206 # default list of output variables to be checked:
207 # 1rst : main variable used to decide if it pass or FAIL
208 # others : number of matching digits to be printed in summary.txt
209 listChk=$DEF_CHECK_LIST
210 # load experiment-specific list from file "tr_checklist" (if it exist)
211 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
212 sVar=`echo $listChk | awk '{print $1}'`
213 # remove 1rst var and expand the list: + => min max mean s.d
214 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
215 | sed 's/+//g' | sed "s/^$sVar//"`
216 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
217 # set ref.outp file-name and, if compressed, uncompress it into subdir
218 refoutp=results/$3
219 if test ! -r $1/results/$3 ; then
220 if test -r $1/results/${3}.gz ; then
221 tmpNam1=$3
222 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
223 if test "x$tmpNam1" = "x$tmpNam2" ; then
224 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
225 fi
226 refoutp=$2/$tmpNam1
227 if [ $debug -gt 0 ]; then
228 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
229 fi
230 gzip -cd $1/results/${3}.gz > $1/$refoutp
231 else
232 echo "missing reference output file '$3' (.gz) in '$1/results/'"
233 fi
234 fi
235 # check for ptracer output in reference_output file :
236 if test $KIND = 0 ; then
237 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
238 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
239 for ii in $PTRACERS_NUM ; do
240 ptrfound=0
241 for jj in $ptr_mon ; do
242 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
243 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
244 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
245 done
246 if test $ptrfound = '1' ; then
247 eval "HAVE_PTR0"$ii"=t"
248 else
249 eval "HAVE_PTR0"$ii"=f"
250 # remove this ptr from the list of output variable to check
251 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
252 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
253 fi
254 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
255 done
256 fi
257 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
258 if test $tst != 1 ; then
259 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
260 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
261 echo "==> WARNING: in checked list:" $listVar 1>&2
262 #- put it back once:
263 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
264 fi
265 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
266 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
267 #---
268 allargs=""
269 for xx in $listVar
270 do
271 case $xx in
272 'PS') if [ $debug -gt 0 ]
273 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
274 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
275 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
276 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
277 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
278 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
279 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
280 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
281 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
282 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
283 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
284 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
285 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
286 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
287 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
288 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
289 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
290 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
291 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
292 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
293 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
294 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
295 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
296 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
297 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
298 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
299 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
300 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
301 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
302 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
303 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
304 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
305 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
306 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
307 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
308 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
309 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
310 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
311 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
312 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
313 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
314 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
315 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
316 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
317 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
318 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
319 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
320 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
321 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
322 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
323 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
324 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
325 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
326 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
327 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
328 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
329 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
330 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
331 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
332 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
333 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
334 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
335 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
336 esac
337 if test $xx = $sVar
338 then allargs="$allargs > $yy <"
339 else allargs="$allargs $yy"
340 fi
341 done
342
343 nbVar=`echo $listVar | awk '{print NF}'`
344 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
345 #-- fill line (up to standard length) with dot:
346 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
347 echo $allargs $adNul
348 else
349 echo $allargs
350 fi
351 # <-- same processing for adjoint & forward test
352 }
353
354 genmakemodel()
355 {
356 # genmakemodel directory
357 if test "x$NOGENMAKE" = xt ; then
358 echo "genmake skipped!"
359 else
360 if test "x$BASH" = x ; then
361 GENMAKE2="../../../tools/genmake2"
362 else
363 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
364 fi
365 (
366 cd $1;
367 command="$GENMAKE2 -ds -m $MAKE"
368 if test "x$MKDEPEND" != x ; then
369 command="$command -makedepend=$MKDEPEND"
370 fi
371 if test $KIND = 4 ; then
372 command="$command -oad -mods=../$code_dir"
373 else
374 command="$command -mods=../$code_dir"
375 fi
376 if test "x$OPTFILE" != xNONE ; then
377 command="$command -optfile=$OPTFILE"
378 fi
379 if test $OptLev = 1 ; then
380 command="$command -ieee"
381 fi
382 if test $OptLev = 0 ; then
383 command="$command -devel"
384 fi
385 if test "x$GSL" = xt ; then
386 command="$command -gsl"
387 fi
388 if test "x$MPI" != x0 ; then
389 command="$command -mpi"
390 fi
391 if test "x$MULTI_THREAD" = xt ; then
392 #- run multi-threaded using OpenMP:
393 command="$command -omp"
394 fi
395 if test "x$USE_R4" = xt ; then
396 command="$command -use_r4"
397 fi
398 if test "x$EXTRFLG" != x ; then
399 command="$command -extra_flag $EXTRFLG"
400 fi
401 if test "x$TS" = xt ; then
402 command="$command -ts"
403 fi
404 if test "x$PAPIS" = xt ; then
405 command="$command -papis"
406 else
407 if test "x$PCLS" = xt ; then
408 command="$command -pcls"
409 fi
410 fi
411 printf 'genmake ... '
412 eval $command > genmake.tr_log 2>&1
413 RETVAL=$?
414 # Reduce the size of the testing emails!
415 head -100 Makefile > $CDIR/Makefile_head
416 if test "x$RETVAL" != x0 ; then
417 tail genmake.tr_log
418 echo "genmakemodel: genmake failed"
419 cp genmake.log genmake_* genmake.tr_log $CDIR
420 return 1
421 else
422 echo "successful"
423 fi
424 )
425 fi
426 }
427
428 makeclean()
429 {
430 # makeclean directory
431 if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
432 if test "x$NOCLEAN" = xt ; then
433 echo "make Clean skipped!"
434 else
435 (
436 cd $1;
437 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
438 if test -r Makefile ; then
439 printf 'clean build-dir: make Clean ... '
440 $MAKE Clean >> make.tr_log 2>&1
441 RETVAL=$?
442 if test "x$RETVAL" != x0 ; then
443 tail make.tr_log
444 echo "makeclean: \"make Clean\" failed"
445 cp make.tr_log genmake.log genmake.tr_log $CDIR
446 return 1
447 fi
448 echo successful
449 else
450 echo ''
451 fi
452 exit 0
453 )
454 fi
455 }
456
457 run_clean()
458 {
459 # run_clean directory
460 if test "x$NOCLEAN" = xt ; then
461 echo "run_clean skipped!"
462 else
463 (
464 cd $1;
465 printf 'clean run-dir ... '
466 # part of what is done after "make clean" when doing "make CLEAN"
467 find . -name "*.meta" -exec rm {} \;
468 find . -name "*.data" -exec rm {} \;
469 find . -name "fort.*" -exec rm {} \;
470 find . -type l -exec rm {} \;
471 #- should remove executable only if sym-link (already done above)
472 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
473 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
474 rm -f *_MIT_CE_000.opt0000 costfunction*0000
475 rm -f oad_cp.[0-9][0-9][0-9].?????
476 rm -rf mnc_test_*
477 echo successful
478 exit 0
479 )
480 fi
481 }
482
483 makedependmodel()
484 {
485 # makedependmodel directory
486 if test "x$NODEPEND" = xt ; then
487 echo "make depend skipped!"
488 else
489 (
490 cd $1;
491 printf 'make depend ... '
492 $MAKE depend >> make.tr_log 2>&1
493 RETVAL=$?
494 if test "x$RETVAL" != x0 ; then
495 tail make.tr_log
496 echo "makedependmodel: make depend failed"
497 cp make.tr_log genmake.log genmake.tr_log $CDIR
498 return 1
499 else
500 echo successful
501 fi
502 )
503 fi
504 }
505
506 makemodel()
507 {
508 # makemodel directory
509 (
510 mk_fail=0
511 if test "x$NOMAKE" = xt ; then
512 cd $1;
513 if test -x $EXECUTABLE ; then
514 echo "make skipped!"
515 else
516 echo "no executable!"
517 mk_fail=3
518 fi
519 else
520 cd $1;
521 if test -r Makefile ; then
522 printf 'make ... '
523 if test "x$REPLMAKE" = x ; then
524 $MAKE $TARG >> make.tr_log 2>&1
525 else
526 $REPLMAKE $TARG >> make.tr_log 2>&1
527 fi
528 RETVAL=$?
529 if test "x$RETVAL" != x0 ; then
530 tail make.tr_log
531 echo failed
532 cp genmake.log genmake.tr_log $CDIR
533 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
534 rm -f $EXECUTABLE
535 mk_fail=1
536 else
537 echo successful
538 fi
539 else
540 echo "no Makefile !"
541 mk_fail=2
542 fi
543 fi
544 if test $KIND = 1 -a -f taf_ftl.log ; then
545 head -1 taf_ftl.log >> $CDIR"/summary.txt"
546 fi
547 if test $KIND = 2 -a -f taf_ad.log ; then
548 head -1 taf_ad.log >> $CDIR"/summary.txt"
549 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
550 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
551 if test -f taf_output ; then
552 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
553 n3er=`grep -c '\*ERROR\* ' taf_output`
554 nerr=`expr $nerr + $n2er + $n3er`
555 fi
556 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
557 >> $CDIR"/summary.txt"
558 fi
559 if test $mk_fail != 0 ; then return $mk_fail ; fi
560 )
561 }
562
563 mk_mpi_size()
564 {
565 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
566 #
567 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
568 # for an MPI build with no more than proc_Nb processors ;
569 # ensure that enough tiles per proc (nSx,nSy) remain for the given
570 # number of threads (nTx,nTy) ;
571 # return the effective number of processors.
572
573 inp=$1
574 out=$2
575 np=$3
576 tx=$4
577 ty=$5
578 tmp=TTT.$$
579
580 # dirX : select with direction to favor in MPI process repartition
581 # dirX=1 : prefer to put more proc in X direction
582 # dirX=0 : prefer to put more proc in Y direction
583 dirX=0
584
585 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
586 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
587 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
588 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
589
590 #- for each direction, assume # of threads is a multiple of total number of tiles
591 nx=$px
592 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
593 nx=`expr $sx \* $px / $tx`
594 if [ $verbose -gt 1 ]; then
595 echo " change px from $px to $nx to accommodate $tx threads"
596 fi
597 fi
598 ny=$py
599 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
600 ny=`expr $sy \* $py / $ty`
601 if [ $verbose -gt 1 ]; then
602 echo " change py from $py to $ny to accommodate $ty threads"
603 fi
604 fi
605 #- find the largest divisor of input_file proc Nb, but not larger than $np
606 pp=0
607 i=1
608 while [ $i -le $nx ] ; do
609 if [ `expr $nx % $i` -eq 0 ] ; then
610 j=1
611 while [ $j -le $ny ] ; do
612 if [ `expr $ny % $j` -eq 0 ] ; then
613 ij=`expr $i \* $j`
614 if [ $ij -gt $pp ] ; then
615 flag=1
616 elif [ $ij -eq $pp ] ; then
617 flag=$dirX
618 else
619 flag=0
620 fi
621 if test $flag = 1 ; then
622 if [ $ij -le $np ] ; then
623 ix=$i ; jy=$j ; pp=$ij
624 #echo " ix,jy= $ix,$jy"
625 fi
626 fi
627 fi
628 j=`expr $j + 1`
629 done
630 fi
631 i=`expr $i + 1`
632 done
633
634 #- create new SIZE.h type file:
635 sx=`expr $sx \* $px / $ix`
636 sy=`expr $sy \* $py / $jy`
637 if [ $verbose -gt 1 ]; then
638 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
639 fi
640 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
641 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
642 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
643 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
644 rm -f $tmp
645 return $pp
646 }
647
648 symlink_mpifiles()
649 {
650 # Put special links so that MPI specific files are used
651 # This MUST be invoked between makeclean and makelinks because
652 # the Makefile will link to non-mpi files by default
653
654 dir=$1
655 code_dir=$2
656 build_dir=$dir/$3
657
658 # These are files that should replace their counter-part when using -mpi
659 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
660
661 for ii in $MPI_FILES ; do
662 i=`echo $ii | sed 's:^\./::'`
663 name=`echo $i | sed 's:_mpi::'`
664 file="../$code_dir/$i"
665 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
666
667 # Is this an MPI run?
668 if test "x$MPI" = x0 ; then
669 # NO: We undo any _mpi symbolically linked files
670 if test -L $build_dir/$name ; then
671 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
672 RETVAL=$?
673 if test "x$RETVAL" = x0 ; then
674 if [ $verbose -gt 1 ]; then
675 echo " Un-linking $name from ../$code_dir" ; fi
676 rm -f $build_dir/$name
677 fi
678 fi
679 else
680 # YES: We symbolically link these files to the build
681 # dir so long as there is no real file in place
682 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
683 RETVAL=$?
684 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
685 if test "x$RETVAL" != x0 ; then
686 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
687 if test ! -r $build_dir/$name ; then
688 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
689 (cd $build_dir; ln -sf $file $name)
690 fi
691 fi
692 fi
693 done
694 }
695
696 linkdata()
697 {
698 # linkdata run_dir input_dir_1 input_dir_2 ...
699 #
700 # symbolically link data files to run directory
701 if test -d $1 ; then
702 (
703 cd $1 ; shift
704 echo 'linkdata from dirs:' $*
705 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
706 for xx in $inpMPI ; do
707 if test -r "../"$1"/"$xx ; then
708 # found 1 _mpi sfx file in 1rst input dir and it is readable
709 yy=`echo $xx | sed 's:\.mpi$::'`
710 if test "x$MPI" = "x0" ; then
711 # not mpi test: remove symbolic link
712 if test -h $yy ; then rm -f $yy ; fi
713 else
714 # mpi test: remove symbolic link & link .mpi sfx file
715 if test -h $yy ; then rm -f $yy ; fi
716 if test ! -r $yy ; then
717 ln -sf "../"$1"/"$xx $yy ;
718 printf " $xx" 1>&2
719 fi
720 fi
721 fi
722 done
723 if test -r "../"$1"/eedata.mth" ; then
724 # found eedata.mth in 1rst input dir and it is readable
725 if test "x$MULTI_THREAD" = "xt" ; then
726 # multi-threaded test: remove symbolic link & link eedata.mth
727 if test -h eedata ; then rm -f eedata ; fi
728 if test ! -r eedata ; then
729 ln -sf "../"$1"/eedata.mth" eedata ;
730 printf ' eedata.mth' 1>&2
731 fi
732 else
733 # not multi-threaded test: remove eedata symbolic link
734 if test -h eedata ; then rm -f eedata ; fi
735 fi
736 fi
737 prevDir='NONE'
738 for ldir in $* ; do
739 if test -d "../"$ldir -a $ldir != $prevDir ; then
740 printf " ldir=${ldir}:" 1>&2
741 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
742 for i in $files ; do
743 if test ! -d "../"$ldir/$i ; then
744 if test ! -r $i ; then
745 printf ' '$i 1>&2
746 ln -sf "../"$ldir"/"$i $i
747 fi
748 fi
749 done
750 printf ' ;' 1>&2
751 if test -x "../"$ldir"/"prepare_run ; then
752 "../"$ldir"/"prepare_run 1>&2
753 else
754 echo '' 1>&2
755 fi
756 fi
757 prevDir=$ldir
758 done
759 )
760 fi
761 }
762
763 runmodel()
764 {
765 # runmodel directory
766 #
767 # runs $COMMAND in "directory"
768 # (where "$COMMAND" is relative to "directory")
769 (
770 cd $1
771 printf 'runmodel in %s ... ' $1
772 if test "x$MPI" != x0 ; then
773 #- adjust the MPI run command with the right number of Procs
774 #echo '' ; echo " COMMAND='$COMMAND'"
775 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
776 if test "x$MPI_MFILE" != x ; then
777 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
778 fi
779 #echo " COMMAND='$COMMAND'"
780 fi
781 if test -L $EXECUTABLE ; then
782 if test -x "../"$builddir"/"$EXECUTABLE ; then
783 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
784 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
785 else rm -f $EXECUTABLE
786 fi
787 fi
788 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
789 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
790 ln -sf "../"$builddir"/"$EXECUTABLE .
791 fi
792 if test ! -x $EXECUTABLE ; then
793 rm -f $RUNLOG ; touch $RUNLOG
794 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
795 echo " no executable:" $EXECUTABLE >> $RUNLOG
796 RETVAL=8
797 ENDVAL=-1
798 else
799 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
800 # output do not exist or is older than executable:
801 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
802 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
803 #- Divided Adjoint Run:
804 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
805 if test $KIND = 2 -a -f run_ADM_DIVA ; then
806 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
807 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
808 eval "let $adm_diva_nb"
809 if [ $add_DIVA_runs -ge 1 ] ; then
810 rm -f costf* divided.ctrl snapshot*
811 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
812 for ii in `seq 1 $add_DIVA_runs` ; do
813 ( eval $COMMAND ) >> $RUNLOG 2>&1
814 echo " additional DIVA run # $ii : done" >> $RUNLOG
815 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
816 done
817 fi
818 fi
819 #- special DIVA processing ends here
820 ( eval $COMMAND ) >> $RUNLOG 2>&1
821 RETVAL=$?
822 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
823 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
824 find . -name "*.meta" -exec rm {} \;
825 find . -name "*.data" -exec rm {} \;
826 rm -rf mnc_test_*
827 fi
828 else
829 RETVAL=0
830 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
831 touch $RUNLOG
832 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
833 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
834 fi
835 fi
836 rm -f run.log_tmp
837 #- in all cases where OutputFile exists, report SIZE and time
838 if test -f $OUTPUTFILE ; then
839 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
840 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
841 grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
842 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
843 fi
844 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
845 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
846 echo successful
847 printf '=> output from running in %s :\n' $1 1>&2
848 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
849 return 0
850 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
851 #-- for some weird cases (run is finihed but with error code)
852 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
853 printf '=> output from running in %s :\n' $1 1>&2
854 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
855 return 0
856 else
857 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
858 printf '=> output from running in %s :\n' $1 1>&2
859 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
860 cp $RUNLOG $CDIR"/"$RUNLOG
861 return 1
862 fi
863 )
864 }
865
866 createcodelet()
867 {
868 # create codelet for comparing model output
869
870 printf "creating the comparison code (using CC=$CC)... "
871 cat > tr_cmpnum.c <<EOF
872 #include <stdio.h>
873 #include <math.h>
874 int main( int argc, char** argv ) {
875 int linnum,cmplin,best,lncnt;
876 double a,b,abave,relerr;
877 best = -22;
878 lncnt = 0;
879 while( 1 & ( (lncnt+=1) < 999 ) ) {
880 scanf("%d", &linnum);
881 if (linnum == -1) break;
882 scanf("%lf", &a); scanf("%lf", &b);
883 abave = 0.5*(fabs(a)+fabs(b));
884 if ( abave == abave ) {
885 if (abave > 0.0) {
886 relerr=fabs(a-b)/abave;
887 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
888 else { cmplin = -16 ; }
889 best = (best > cmplin) ? best : cmplin; }
890 else { cmplin = -22 ; }
891 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
892 }
893 else {
894 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
895 break; }
896 }
897 if (lncnt == 999) best=-29;
898 if (linnum != -1) best=-99;
899 printf("%d\n", -best);
900 return 0;
901 }
902 EOF
903 $CC -o tr_cmpnum tr_cmpnum.c -lm
904
905 if [ -x ./tr_cmpnum ]; then
906 echo "OK"
907 return 0
908 else
909 echo
910 echo "ERROR: failed to compile comparison code -- please specify"
911 echo " a C compiler using the CC environment variable."
912 exit 1
913 fi
914 }
915
916 formatresults()
917 {
918 # formatresults expt genmake depend make run results*
919
920 nm=$1
921 printf '%s %s %s %s' $2 $3 $4 $5
922 shift; shift; shift; shift; shift;
923 listPrt=$@
924 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
925 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
926 printf '%3s' $listPrt
927 # line below does not work on hp-ux_ia64 : do those substitutions later on
928 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
929
930 if [ $xx = '..' ]; then
931 printf ' N/O '
932 elif [ $xx = '--' ]; then
933 printf ' N/O '
934 elif [ $xx = 99 ]; then
935 printf ' N/O '
936 else
937 if [ $xx -ge $MATCH_CRIT ]; then
938 printf ' pass'
939 else
940 printf ' FAIL'
941 fi
942 fi
943 printf ' %s' $nm
944 if test $KIND = 2 ; then
945 #-- apppend taf repport summary:
946 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
947 if test $tafrep = 1 ; then
948 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
949 fi
950 fi
951 printf '\n'
952
953 }
954
955 scandirs()
956 {
957 if [ $# -eq 1 ]; then
958 for arg in * ; do
959 #test -f $arg/$1 && echo $arg
960 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
961 done
962 else
963 echo $*
964 fi
965 }
966
967
968 check_eedata()
969 {
970 # check_eedata eedata size.h
971 if [ $# -eq 2 ] ; then
972 if test -f $1 -a -f $2 ; then
973 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
974 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
975 if test "x$nx" = x ; then
976 rx=10
977 else
978 rx=`expr $sx % $nx`
979 fi
980 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
981 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
982 if test "x$ny" = x ; then
983 ry=20
984 else
985 ry=`expr $sy % $ny`
986 fi
987 echo `expr $rx + $ry`
988 else
989 echo '-1'
990 fi
991 elif [ $# -eq 1 ] ; then
992 if test -f $1 ; then
993 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
994 if test "x$nx" = x ; then nx=1 ; fi
995 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
996 if test "x$ny" = x ; then ny=1 ; fi
997 #echo $nx $ny
998 echo $nx
999 else
1000 echo '-1'
1001 fi
1002 else
1003 echo '-2'
1004 fi
1005
1006 }
1007
1008 ###############################################################################
1009
1010
1011 # Default properties
1012 debug=0
1013 verbose=1
1014 NBLINES_MKLOG=16000
1015
1016 OptLev=1
1017 GSL=f
1018
1019 CLEANUP=f
1020 NORUN=f
1021 QUICK=f
1022 NOMAKE=f
1023 NOGENMAKE=f
1024 NOCLEAN=f
1025 NODEPEND=f
1026 POSTCLEAN=0
1027
1028 BASH=
1029 OPTFILE=NONE
1030 ADDRESSES=
1031 TESTDIRS=
1032 SKIPDIRS=
1033 MPACKDIR="../tools/mpack-1.6"
1034 HAVE_MPACK=
1035 MPACK=
1036 SENDCMD=
1037 SAVDIR='.'
1038 COMMAND=
1039 MKDEPEND=
1040 if test "x$MAKE" = x ; then
1041 MAKE=make
1042 fi
1043 REPLMAKE=
1044 if test "x$CC" = x ; then
1045 CC=cc
1046 fi
1047 JOBS=
1048 TARG=
1049 MPI=0
1050 MPI_MFILE=
1051 MULTI_THREAD=f
1052 OUTDIR=
1053 DELDIR=
1054 USE_R4=
1055 EXTRFLG=
1056
1057 #- type of testing (KIND):
1058 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1059 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1060 KIND=0
1061
1062 # list of pTracers to check for monitor output
1063 PTRACERS_NUM="1 2 3 4 5"
1064
1065 MATCH_CRIT=10
1066
1067 printf "parsing options... "
1068
1069 ac_prev=
1070 for ac_option ; do
1071
1072 # If the previous option needs an argument, assign it.
1073 if test -n "$ac_prev"; then
1074 eval "$ac_prev=\$ac_option"
1075 ac_prev=
1076 continue
1077 fi
1078
1079 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1080
1081 case $ac_option in
1082
1083 -help | --help | -h | --h) usage ;;
1084
1085 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1086 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1087
1088 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1089 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1090 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1091 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1092
1093 -send | --send ) ac_prev=SENDCMD ;;
1094 -send=* | --send=* ) SENDCMD=$ac_optarg ;;
1095 -savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
1096 -savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
1097
1098 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1099 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1100 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1101 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1102
1103 -bash | --bash | -b | --b) ac_prev=BASH ;;
1104 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1105
1106 -command | --command | -c | --c) ac_prev=COMMAND ;;
1107 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1108
1109 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1110 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1111
1112 -make | --make | -m | --m) ac_prev=MAKE ;;
1113 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1114
1115 -repl_mk | --repl_mk ) ac_prev=REPLMAKE ;;
1116 -repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;;
1117
1118 -odir | --odir) ac_prev=OUTDIR ;;
1119 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1120
1121 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1122 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1123
1124 -match | --match ) ac_prev=MATCH_CRIT ;;
1125 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1126
1127 -j | --j) ac_prev=JOBS ;;
1128 -j=* | --j=*) JOBS=$ac_optarg ;;
1129
1130 -ef | --ef) ac_prev=EXTRFLG ;;
1131 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1132
1133 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1134
1135 -norun | --norun | -nr | --nr) NORUN=t ;;
1136 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1137 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1138 -quick | --quick | -q | --q) QUICK=t ;;
1139 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1140 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1141 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1142
1143 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1144 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1145
1146 -mpi | --mpi) MPI=2 ;;
1147 -MPI | --MPI) ac_prev=MPI ;;
1148 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1149
1150 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1151 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1152
1153 -mth) MULTI_THREAD=t ;;
1154
1155 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1156 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1157 fi ;;
1158 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1159 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1160 fi ;;
1161 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1162 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1163 fi ;;
1164
1165 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1166 printf " ... " ;;
1167 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1168 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1169 -fast) OptLev=`expr $OptLev \* 2` ;;
1170 -devel) OptLev=0 ;;
1171 -gsl) GSL=t ;;
1172
1173 -verbose) verbose=2 ;;
1174 -debug) debug=1 ;;
1175 -quiet) verbose=0 ;;
1176
1177 -deldir | -dd) DELDIR=t ;;
1178
1179 -use_r4|-ur4) USE_R4=t ;;
1180
1181 -ts) TS=t;;
1182 -papis) PAPIS=t;;
1183 -pcls) PCL=t;;
1184
1185 -*) echo "Error: unrecognized option: "$ac_option
1186 usage ;;
1187 *) echo "Error: unrecognized argument: "$ac_option
1188 usage ;;
1189
1190 esac
1191
1192 done
1193
1194 if test "x$QUICK" = xt ; then
1195 NOGENMAKE=t
1196 NOCLEAN=t
1197 NODEPEND=t
1198 fi
1199
1200 #- check length of MPI machine file:
1201 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1202 if test -r $MPI_MFILE ; then
1203 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1204 if [ $nl -lt $MPI ] ; then
1205 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1206 usage
1207 fi
1208 if [ $verbose -gt 1 ]; then
1209 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1210 fi
1211 else
1212 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1213 usage
1214 fi
1215 fi
1216
1217 #- setting for forward or ADM testing
1218 if test $KIND = 1 ; then
1219 TARG=ftlall
1220 code_dir=code_ad
1221 inputdir=input_ad
1222 ref_outp="output_tlm.txt"
1223 EXECUTABLE="mitgcmuv_ftl"
1224 elif test $KIND = 2 ; then
1225 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1226 code_dir=code_ad
1227 inputdir=input_ad
1228 ref_outp="output_adm.txt"
1229 EXECUTABLE="mitgcmuv_ad"
1230 elif test $KIND = 4 ; then
1231 TARG=adAll
1232 code_dir=code_oad
1233 inputdir=input_oad
1234 ref_outp="output_oadm.txt"
1235 EXECUTABLE="mitgcmuv_ad"
1236 else
1237 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1238 code_dir=code
1239 inputdir=input
1240 ref_outp="output.txt"
1241 EXECUTABLE="mitgcmuv"
1242 fi
1243
1244 xx=`echo $TESTDIRS | awk '{print $1}'`
1245 if test "x$TESTDIRS" = x ; then
1246 LIST=`scandirs results/$ref_outp`
1247 elif test $xx = 'start_from' ; then
1248 xx=`echo $TESTDIRS | awk '{print $2}'`
1249 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1250 else
1251 #- expand group of experiments:
1252 LIST=" "
1253 for xx in $TESTDIRS
1254 do
1255 case $xx in
1256 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1257 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1258 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1259 ;;
1260 'tutorials')
1261 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1262 *) LIST=${LIST}" "$xx ;;
1263 esac
1264 done
1265 fi
1266 #echo 'LIST='${LIST}'<'
1267 #- skip dirs, remove duplicate and non-directory:
1268 TESTDIRS=" "
1269 count=0
1270 for xx in $LIST
1271 do
1272 yy=`echo $SKIPDIRS | grep -c $xx`
1273 if test $yy = 0 ; then
1274 if test -d $xx ; then
1275 yy=`echo $TESTDIRS | grep -c $xx`
1276 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1277 else count=1 ;
1278 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1279 fi
1280 else
1281 if test $count = 1 ; then echo -n ", \"$xx\""
1282 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1283 fi
1284 fi
1285 done
1286 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1287 #echo 'TESTDIRS='${TESTDIRS}'<'
1288
1289 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1290 OPTFILE=$MITGCM_OF
1291 fi
1292
1293 LOC_MFILE='tr_mpi_mfile'
1294 RUNLOG="run.tr_log"
1295 if test "x$MPI" = x0 ; then
1296 OUTPUTFILE=$ref_outp
1297 if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi
1298 else
1299 OUTPUTFILE="STDOUT.0000"
1300 if test "x$COMMAND" = x ; then COMMAND="mpirun -v -np TR_NPROC ./$EXECUTABLE" ; fi
1301 fi
1302
1303 echo "OK (COMMAND='$COMMAND')"
1304
1305 TMP=./tr_$$
1306 #- try to put temporary files in system-local /tmp dir
1307 #TMP=/tmp/tr_$$
1308 #touch $TMP ; retVal=$?
1309 #if [ $retVal -eq 0 ] ; then
1310 # if test ! -r $TMP ; then TMP=./tr_$$ ; fi
1311 #else
1312 # TMP=./tr_$$
1313 #fi
1314 #rm -f $TMP
1315 #if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
1316
1317 # set the Default List of output variables to be checked:
1318 # (use default or load experiment-specific list from file "tr_checklist")
1319 # content : 1rst = main variable used to decide if it pass or FAIL
1320 # others = number of matching digits to be printed in summary.txt
1321 if test $KIND = 1 ; then
1322 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1323 EMPTY_RESULTS='.. .. ..'
1324 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1325 elif test $KIND = 2 -o $KIND = 4 ; then
1326 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1327 EMPTY_RESULTS='.. .. ..'
1328 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1329 else
1330 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1331 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1332 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1333 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1334 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1335 fi
1336
1337 # create the FORTRAN comparison code
1338 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1339 echo "skipping comparison code build"
1340 else
1341 createcodelet
1342 fi
1343
1344 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1345 if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
1346 echo "skipping mpack build"
1347 else
1348 build_mpack
1349 if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
1350 fi
1351
1352 # Create a uniquely named directory to store results
1353 CMDLINE=$0
1354 for xx in "$@" ; do nw=`echo $xx | wc -w`
1355 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1356 nb=`echo $xx | grep -c '='`
1357 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1358 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1359 CMDLINE="$CMDLINE $yy" ; fi
1360 fi
1361 done
1362 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1363 MACH=`hostname`
1364 UNAMEA=`uname -a`
1365 DATE=`date +%Y%m%d`
1366 BASE="tr_"$MACH"_"$DATE"_"
1367 if test "x$OUTDIR" != x ; then
1368 BASE="tr_"$OUTDIR"_"$DATE"_"
1369 else
1370 short_name=`hostname | sed 's/\..*$//'`
1371 BASE="tr_"$short_name"_"$DATE"_"
1372 fi
1373 DNUM=0
1374 DRESULTS="$BASE$DNUM"
1375 while test -e $DRESULTS ; do
1376 DNUM=$(( $DNUM + 1 ))
1377 DRESULTS="$BASE$DNUM"
1378 done
1379 mkdir $DRESULTS
1380 RETVAL=$?
1381 if test "x$RETVAL" != x0 ; then
1382 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1383 exit 1
1384 fi
1385 SUMMARY="$DRESULTS/summary.txt"
1386 start_date=`date`
1387 echo $start_date > $SUMMARY
1388 echo 'run:' $CMDLINE >> $SUMMARY
1389 echo 'on :' $UNAMEA >> $SUMMARY
1390
1391 of_path=
1392 if test "x$OPTFILE" != xNONE ; then
1393 if test -r $OPTFILE ; then
1394 # get the path
1395 path=${OPTFILE%/*}
1396 if test "x$path" = x ; then
1397 of_path=`pwd`
1398 else
1399 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1400 fi
1401 file=${OPTFILE##*/}
1402 OPTFILE=$of_path/$file
1403 cp $OPTFILE $DRESULTS
1404 echo >> $SUMMARY
1405 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1406 else
1407 echo | tee -a $SUMMARY
1408 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1409 exit 1
1410 fi
1411 else
1412 echo >> $SUMMARY
1413 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1414 #-note: to be filled later after 1rst run
1415 fi
1416 echo
1417 echo >> $SUMMARY
1418 if test $KIND = 0 ; then
1419 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1420 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1421 line_1="G D M c m s m s m s m s"
1422 line_2="e p a R g m m e . m m e . m m e . m m e ."
1423 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1424 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1425 for ii in $PTRACERS_NUM ; do
1426 line_0="$line_0 --PTR 0"$ii"--"
1427 line_1="$line_1 m s"
1428 line_2="$line_2 m m e ."
1429 line_3="$line_3 i a a d"
1430 line_4="$line_4 n x n ."
1431 done
1432 else
1433 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1434 if test $KIND = 1 ; then
1435 #echo "TANGLIN=true" >> $SUMMARY
1436 echo "TangLin generated by TAF" >> $SUMMARY
1437 elif test $KIND = 3 ; then
1438 echo "TangLin generated by OpenAD" >> $SUMMARY
1439 elif test $KIND = 2 ; then
1440 #echo "ADJOINT=true" >> $SUMMARY
1441 echo "Adjoint generated by TAF" >> $SUMMARY
1442 else
1443 echo "Adjoint generated by OpenAD" >> $SUMMARY
1444 fi
1445 if test $KIND = 1 -o $KIND = 3 ; then
1446 line_1="G D M C T F"
1447 line_2="e p a R o L D"
1448 else
1449 line_1="G D M C A F"
1450 line_2="e p a R o d D"
1451 fi
1452 line_3="n n k u s G G"
1453 line_4="2 d e n t r r"
1454 echo >> $SUMMARY
1455 fi
1456 if test "x$CLEANUP" != xt ; then
1457 echo "$line_0" | tee -a $SUMMARY
1458 echo "$line_1" | tee -a $SUMMARY
1459 echo "$line_2" | tee -a $SUMMARY
1460 echo "$line_3" | tee -a $SUMMARY
1461 echo "$line_4" | tee -a $SUMMARY
1462 echo "" | tee -a $SUMMARY
1463 fi
1464 echo "-------------------------------------------------------------------------------"
1465
1466 # ...and each test directory...
1467 for dir in $TESTDIRS ; do
1468
1469 # set builddir & rundir:
1470 builddir="build"
1471 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1472 rundir="run"
1473 pfxdir="tr_$rundir"
1474 if test ! -d $dir/$rundir ; then
1475 rundir=$builddir
1476 fi
1477 CODE_DIR=$dir/$code_dir
1478 BUILD_DIR=$dir/$builddir
1479
1480 # Cleanup only!
1481 if test "x$CLEANUP" = xt ; then
1482 echo -n ' --- dir:' $BUILD_DIR ': '
1483 makeclean $BUILD_DIR
1484 ( cd $BUILD_DIR
1485 rm -f $EXECUTABLE *.bak
1486 rm -f genmake_state genmake_*optfile genmake.log
1487 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1488 rm -rf mpi_headers
1489 )
1490 if test -d $dir/$rundir/CVS ; then
1491 echo -n ' --- dir:' $dir/$rundir ': '
1492 run_clean $dir/$rundir
1493 fi
1494 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1495 ttd=`echo $trdir | wc -w`
1496 if test $ttd != 0 ; then
1497 echo ' --- rm dir:' $trdir
1498 ( cd $dir ; rm -rf $trdir )
1499 fi
1500 continue
1501 fi
1502
1503 # Verify that the testdir exists and contains previous
1504 # results in the correct location--or skip this directory!
1505 fout=$dir"/results/"$ref_outp
1506 #if test ! -r $fout ; then
1507 if test ! -r $fout -a ! -r ${fout}.gz ; then
1508 echo "can't read \"$fout\" -- skipping $dir"
1509 continue
1510 fi
1511
1512 # Check for specific files for particular type of run
1513
1514 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1515 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1516 continue
1517 fi
1518 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1519 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1520 continue
1521 fi
1522
1523 if test "x$MPI" != "x0" ; then
1524 ntx=1 ; nty=1
1525 if test "x$MULTI_THREAD" = "xt" ; then
1526 ff=$dir"/input/eedata.mth"
1527 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1528 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1529 if test "x$ntx" = x ; then ntx=1 ; fi
1530 if test "x$nty" = x ; then nty=1 ; fi
1531 fi
1532 #- create new SIZE.h with no more than '$MPI' Procs
1533 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1534 LOC_NPROC=$?
1535 ( cd $BUILD_DIR
1536 if test -r SIZE.h.mpi ; then
1537 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1538 else RETVAL=1
1539 fi
1540 if test "x$RETVAL" = x0 ; then
1541 rm -f tr_size.mpi
1542 else
1543 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1544 fi
1545 )
1546 if test "x$MPI_MFILE" != x ; then
1547 #- create new MPI machine-file with the right number of Procs
1548 rm -f $LOC_MFILE
1549 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1550 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1551 if [ $nl -lt $LOC_NPROC ] ; then
1552 rm -f $LOC_MFILE
1553 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1554 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1555 fi
1556 if [ $verbose -gt 1 ]; then
1557 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1558 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1559 fi
1560 fi
1561 if test "x$MULTI_THREAD" = "xt" ; then
1562 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1563 if test $retv != 0 ; then
1564 echo "input/eedata.mth tiling misfit -- skipping $dir"
1565 continue
1566 fi
1567 fi
1568 fi
1569
1570 # Check whether there are "extra runs" for this testdir
1571 extra_runs=
1572 if test "x$NORUN" = xf ; then
1573 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1574 fi
1575 #echo "ex_run_dirs='$ex_run_dirs'"
1576 for exd in $ex_run_dirs ; do
1577 name=`echo $exd | sed -e "s/$inputdir\.//"`
1578 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1579 outf="$dir/results/$refExOut"
1580 if test -r $outf -o -r ${outf}.gz ; then
1581 if test "x$MULTI_THREAD" = "xt" ; then
1582 if test -r $dir"/"$exd"/eedata.mth" ; then
1583 if test "x$MPI" = "x0" ; then
1584 extra_runs="$extra_runs $name"
1585 else
1586 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1587 if test $retv = 0 ; then
1588 extra_runs="$extra_runs $name"
1589 else
1590 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1591 fi
1592 fi
1593 #else echo $dir"/"$exd"/eedata.mth: not found"
1594 fi
1595 else
1596 extra_runs="$extra_runs $name"
1597 fi
1598 fi
1599 done
1600
1601 echo
1602 if test "x$extra_runs" = "x" ; then
1603 echo "Experiment: $dir"
1604 else
1605 echo "Experiment: $dir ; extra_runs=$extra_runs"
1606 fi
1607 echo
1608 unset genmake makedepend make run
1609 results=$EMPTY_RESULTS
1610
1611 # Create an output dir & summary.txt file for each tested experiment (tdir)
1612 locDIR=$DRESULTS"/"$dir
1613 mkdir $locDIR
1614 #- report to this experiment local summary file ---
1615 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1616 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1617 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1618 CDIR=`pwd`"/$locDIR"
1619
1620 if test "x$NORUN" = xt ; then
1621 run=N
1622 genmakemodel $dir/$builddir && genmake=Y \
1623 && makeclean $dir/$builddir \
1624 && symlink_mpifiles $dir $code_dir $builddir \
1625 && makedependmodel $dir/$builddir && makedepend=Y \
1626 && makemodel $dir/$builddir && make=Y
1627 else
1628 genmakemodel $dir/$builddir && genmake=Y \
1629 && makeclean $dir/$builddir \
1630 && symlink_mpifiles $dir $code_dir $builddir \
1631 && makedependmodel $dir/$builddir && makedepend=Y \
1632 && makemodel $dir/$builddir && make=Y \
1633 && run_clean $dir/$rundir \
1634 && linkdata $dir/$rundir $inputdir \
1635 && runmodel $dir/$rundir && run=Y \
1636 && results=`testoutput_run $dir $rundir $ref_outp`
1637 fi
1638 #echo "results='$results'"
1639
1640 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1641 echo 1>&2
1642 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1643 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1644
1645 for ex in $extra_runs ; do
1646 unset run
1647 results=$EMPTY_RESULTS
1648 # reference output file
1649 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1650 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1651 locDIR=$DRESULTS"/"$dir"."$ex
1652 mkdir $locDIR
1653 #- report to this experiment local summary file ---
1654 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1655 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1656 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1657 CDIR=`pwd`"/$locDIR"
1658 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1659 run_clean $dir/$pfxdir.$ex
1660 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1661 runmodel $dir/$pfxdir.$ex && run=Y \
1662 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1663 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1664 echo 1>&2
1665 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1666 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1667 if test "x$POSTCLEAN" = x2 ; then
1668 run_clean $dir/$pfxdir.$ex
1669 fi
1670 done
1671
1672 if test ! -f $DRESULTS"/"genmake_state ; then
1673 if test -f $dir/$builddir/Makefile ; then
1674 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1675 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1676 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1677 echo " $mkOpt" >> $DRESULTS/genmake_state
1678 if test "x$OPTFILE" = xNONE ; then
1679 eval $mkOpt
1680 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1681 $SUMMARY > tmp.tr_log
1682 RETVAL=$?
1683 if test "x$RETVAL" = x0 ; then
1684 cp -f tmp.tr_log $SUMMARY
1685 fi
1686 rm -f tmp.tr_log
1687 fi
1688 gmkLog=$dir/$builddir/genmake.log
1689 if test -r $gmkLog ; then
1690 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1691 RETVAL=$?
1692 if test "x$RETVAL" = x0 ; then
1693 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1694 echo "extract compiler version:" >> $DRESULTS/genmake_state
1695 sed -n '/Get compiler version/,/<-- compiler version/p' \
1696 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1697 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1698 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1699 >> $DRESULTS/genmake_state
1700 rm -f tmp.tr_log
1701 fi
1702 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1703 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1704 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1705 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1706 fi
1707 fi
1708 fi
1709 #postclean $dir/$builddir
1710 if test "x$POSTCLEAN" = x2 ; then
1711 makeclean $dir/$builddir \
1712 && run_clean $dir/$rundir
1713 fi
1714 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1715
1716 echo "-------------------------------------------------------------------------------"
1717
1718 done
1719
1720 printf "Start time: " >> $SUMMARY
1721 echo "$start_date" >> $SUMMARY
1722 printf "End time: " >> $SUMMARY
1723 date >> $SUMMARY
1724
1725 # If addresses were supplied and mpack built successfully, then try
1726 # to send email using mpack.
1727 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1728 echo "No results email was sent."
1729 else
1730 if test "x$SENDCMD" != x ; then
1731 if [ $verbose -gt 1 ]; then
1732 echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
1733 fi
1734 tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
1735 && gzip ${SAVDIR}/${DRESULTS}".tar" \
1736 && $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
1737 RETVAL=$?
1738 if test "x$RETVAL" != x0 ; then
1739 echo
1740 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1741 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1742 echo " summary of results from the directory \"$DRESULTS\"."
1743 echo
1744 else
1745 echo
1746 echo "An email containing results was sent to the following addresses:"
1747 echo " \"$ADDRESSES\""
1748 echo
1749 test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
1750 test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
1751 fi
1752 fi
1753 fi
1754
1755 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1756 rm -f tr_cmpnum.c tr_cmpnum
1757 fi
1758
1759 if test "x$CLEANUP" != xt ; then
1760 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1761 if test -e tr_out.txt ; then
1762 mv tr_out.txt tr_out.txt.old
1763 fi
1764 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1765 fi
1766
1767 if test "x$DELDIR" = xt ; then
1768 rm -rf $DRESULTS
1769 fi
1770 echo "======== End of testreport execution ========"

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