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Revision 1.195 - (show annotations) (download)
Sun Sep 22 23:35:56 2013 UTC (6 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint64q, checkpoint64p, checkpoint64s, checkpoint64r, checkpoint64o
Changes since 1.194: +10 -9 lines
for MPI test, set default COMMAND to 'mpirun -v -np TR_NPROC ./{executable}'

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.194 2013/08/22 19:34:15 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " ---- type of test : ----"
15 echo " (-tlm) perform a Tangent Linear run"
16 echo " (-adm|-ad) perform an adjoint run"
17 echo " (-oad) perform an OpenAD adjoint run"
18 echo " (-mth) run multi-threaded (using eedata.mth)"
19 echo " (-mpi) use MPI to compile and run on 2 processors"
20 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
21 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
22 echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)"
23 echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'"
24 echo " ---- testing options : ----"
25 echo " (-optfile|-of) STRING list of optfiles to use"
26 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
27 echo " DEF=off => use IEEE numerics option (if available)"
28 echo " (-devel) use optfile developement flags (if available)"
29 echo " (-gsl) compile with \"-gsl\" flag"
30 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
31 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
32 echo " (recognized groups: basic, tutorials)"
33 echo " (DEF=\"\" which test all)"
34 echo " (if list= 'start_from THIS_EXP' then"
35 echo " test THIS_EXP + all the following)"
36 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
37 echo " (DEF=\"\" which test all)"
38 echo " (-ts) provide timing information per timestep"
39 echo " (-papis) provide MFlop/s per timestep using PAPI"
40 echo " (-pcls) provide MFlop/s per timestep using PCL"
41 echo " ---- system options : ----"
42 echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
43 echo " (DEF=\"\" for \"bash\")"
44 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
45 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
46 echo " (-make|-m) STRING command to use for \"make\""
47 echo " (DEF=\"make\")"
48 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
49 echo " ---- output options : ----"
50 echo " (-match) NUMBER Matching Criteria (number of digits)"
51 echo " (DEF=\"$MATCH_CRIT\")"
52 echo " (-odir) STRING used to build output directory name"
53 echo " (DEF=\"hostname\")"
54 echo " (-addr|-a) STRING list of email recipients"
55 echo " (DEF=\"\" no email is sent)"
56 echo " (-send) STRING sending command (instead of using mpack)"
57 echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
58 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
59 echo " (DEF=\"../tools/mpack-1.6\")"
60 echo " -- do only some parts: --"
61 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
62 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
63 echo " (-obj) only produces objects (=norun & no executable)"
64 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
65 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
66 echo " (-nogenmake|-ng) skip the genmake stage"
67 echo " (-noclean|-nc) skip the \"make clean\" stage"
68 echo " (-nodepend|-nd) skip the \"make depend\" stage"
69 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
70 echo " (-deloutp|-do) delete output files after successful run"
71 echo " (-deldir|-dd) on success, delete the output directory"
72 echo
73 echo "and where STRING can be a whitespace-delimited list"
74 echo "such as:"
75 echo
76 echo " -t 'exp0 exp2 exp3' "
77 echo " -addr='abc@123.com testing@home.org'"
78 echo
79 echo "provided that the expression is properly quoted within the current"
80 echo "shell (note the use of single quotes to protect white space)."
81 echo
82 exit 1
83 }
84
85 # build the mpack utility
86 build_mpack()
87 {
88 printf "building the mpack utility... "
89 MPACK="$MPACKDIR/mpack"
90 if test ! -x $MPACK ; then
91 if test ! -d $MPACKDIR ; then
92 echo
93 echo "Error: can't find \"$MPACKDIR\""
94 echo " are you sure this program is being run in the correct "
95 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
96 echo
97 HAVE_MPACK=f
98 fi
99 if test "x$CC" = x ; then
100 export CC=cc
101 fi
102 printf "building mpack (using CC=$CC)... "
103 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
104 RETVAL=$?
105 if test "x$RETVAL" != x0 ; then
106 echo
107 echo "Error building the mpack tools at: $MPACK_DIR"
108 echo
109 HAVE_MPACK=f
110 else
111 rm -f tr_build_mpack.out
112 HAVE_MPACK=t
113 echo "done"
114 fi
115 else
116 HAVE_MPACK=t
117 echo "already exist"
118 fi
119 }
120
121 testoutput_var()
122 {
123 # testoutput_var dir s1 label subdir reference_output
124 #
125 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
126 # with same output from reference file $dir/$reference_output
127 # using search strings s1 and text label
128
129 if [ $debug -gt 0 ]; then
130 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
131 fi
132 if [ -r $1/$4/$OUTPUTFILE ]; then
133 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > ${TMP}a.txt
134 lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
135 if [ $lncntA -lt 2 ]; then
136 if [ $verbose -gt 0 ]; then
137 echo Not enough lines of output when searching for "$2" 1>&2
138 fi
139 rm -f ${TMP}a.txt ; return 99
140 fi
141 else
142 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
143 return 99
144 fi
145 if [ $debug -gt 0 ]; then
146 echo testoutput_var: grep "$2" $1/$5 1>&2
147 fi
148 grep "$2" $1/$5 | sed 's/.*=//' | cat -n > ${TMP}b.txt
149 lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
150 if [ $lncntB -lt 2 ]; then
151 if [ $verbose -gt 0 ]; then
152 echo Not enough lines of output when searching for "$2" 1>&2
153 fi
154 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
155 fi
156 if [ $lncntA -ne $lncntB ]; then
157 if [ $verbose -gt 0 ]; then
158 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
159 fi
160 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
161 fi
162 has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
163 if [ $has_nan -gt 0 ] ; then
164 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
165 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
166 fi
167 has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
168 if [ $has_inf -gt 0 ] ; then
169 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
170 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
171 fi
172 if [ $debug -gt 0 ]; then
173 echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
174 fi
175 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
176 join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
177 if [ $debug -gt 0 ]; then
178 echo testoutput_var: compare_lines 1>&2
179 fi
180 if [ $verbose -gt 1 ]; then
181 cat ${TMP}c.txt 1>&2
182 fi
183 echo "-1" >> ${TMP}c.txt
184 digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
185 if [ $digits_of_similarity -eq 99 ]; then
186 if [ $verbose -gt 0 ]; then
187 echo testoutput_var: No comparison was available for \"$3\" 1>&2
188 fi
189 digits_of_similarity=99
190 else
191 if [ $verbose -gt 0 ]; then
192 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
193 fi
194 fi
195 rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
196
197 return $digits_of_similarity
198 }
199
200 testoutput_run()
201 {
202 # testoutput_run directory subdir reference_output
203 #
204 # test output from 1 run in "directory"
205 # --> same processing for adjoint & forward test
206 # default list of output variables to be checked:
207 # 1rst : main variable used to decide if it pass or FAIL
208 # others : number of matching digits to be printed in summary.txt
209 listChk=$DEF_CHECK_LIST
210 # load experiment-specific list from file "tr_checklist" (if it exist)
211 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
212 sVar=`echo $listChk | awk '{print $1}'`
213 # remove 1rst var and expand the list: + => min max mean s.d
214 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
215 | sed 's/+//g' | sed "s/^$sVar//"`
216 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
217 # set ref.outp file-name and, if compressed, uncompress it into subdir
218 refoutp=results/$3
219 if test ! -r $1/results/$3 ; then
220 if test -r $1/results/${3}.gz ; then
221 tmpNam1=$3
222 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
223 if test "x$tmpNam1" = "x$tmpNam2" ; then
224 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
225 fi
226 refoutp=$2/$tmpNam1
227 if [ $debug -gt 0 ]; then
228 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
229 fi
230 gzip -cd $1/results/${3}.gz > $1/$refoutp
231 else
232 echo "missing reference output file '$3' (.gz) in '$1/results/'"
233 fi
234 fi
235 # check for ptracer output in reference_output file :
236 if test $KIND = 0 ; then
237 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
238 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
239 for ii in $PTRACERS_NUM ; do
240 ptrfound=0
241 for jj in $ptr_mon ; do
242 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
243 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
244 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
245 done
246 if test $ptrfound = '1' ; then
247 eval "HAVE_PTR0"$ii"=t"
248 else
249 eval "HAVE_PTR0"$ii"=f"
250 # remove this ptr from the list of output variable to check
251 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
252 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
253 fi
254 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
255 done
256 fi
257 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
258 if test $tst != 1 ; then
259 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
260 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
261 echo "==> WARNING: in checked list:" $listVar 1>&2
262 #- put it back once:
263 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
264 fi
265 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
266 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
267 #---
268 allargs=""
269 for xx in $listVar
270 do
271 case $xx in
272 'PS') if [ $debug -gt 0 ]
273 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
274 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
275 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
276 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
277 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
278 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
279 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
280 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
281 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
282 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
283 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
284 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
285 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
286 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
287 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
288 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
289 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
290 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
291 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
292 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
293 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
294 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
295 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
296 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
297 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
298 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
299 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
300 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
301 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
302 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
303 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
304 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
305 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
306 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
307 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
308 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
309 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
310 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
311 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
312 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
313 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
314 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
315 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
316 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
317 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
318 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
319 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
320 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
321 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
322 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
323 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
324 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
325 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
326 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
327 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
328 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
329 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
330 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
331 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
332 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
333 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
334 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
335 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
336 esac
337 if test $xx = $sVar
338 then allargs="$allargs > $yy <"
339 else allargs="$allargs $yy"
340 fi
341 done
342
343 nbVar=`echo $listVar | awk '{print NF}'`
344 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
345 #-- fill line (up to standard length) with dot:
346 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
347 echo $allargs $adNul
348 else
349 echo $allargs
350 fi
351 # <-- same processing for adjoint & forward test
352 }
353
354 genmakemodel()
355 {
356 # genmakemodel directory
357 if test "x$NOGENMAKE" = xt ; then
358 echo "genmake skipped!"
359 else
360 if test "x$BASH" = x ; then
361 GENMAKE2="../../../tools/genmake2"
362 else
363 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
364 fi
365 (
366 cd $1;
367 command="$GENMAKE2 -ds -m $MAKE"
368 if test "x$MKDEPEND" != x ; then
369 command="$command -makedepend=$MKDEPEND"
370 fi
371 if test $KIND = 1 -o $KIND = 2 ; then
372 command="$command --mods=../code_ad"
373 elif test $KIND = 4 ; then
374 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods ../code_oad"
375 else
376 command="$command -mods=../code"
377 fi
378 if test "x$OPTFILE" != xNONE ; then
379 command="$command -optfile=$OPTFILE"
380 fi
381 if test $OptLev = 1 ; then
382 command="$command -ieee"
383 fi
384 if test $OptLev = 0 ; then
385 command="$command -devel"
386 fi
387 if test "x$GSL" = xt ; then
388 command="$command -gsl"
389 fi
390 if test "x$MPI" != x0 ; then
391 command="$command -mpi"
392 fi
393 if test "x$MULTI_THREAD" = xt ; then
394 #- run multi-threaded using OpenMP:
395 command="$command -omp"
396 fi
397 if test "x$USE_R4" = xt ; then
398 command="$command -use_r4"
399 fi
400 if test "x$EXTRFLG" != x ; then
401 command="$command -extra_flag $EXTRFLG"
402 fi
403 if test "x$TS" = xt ; then
404 command="$command -ts"
405 fi
406 if test "x$PAPIS" = xt ; then
407 command="$command -papis"
408 else
409 if test "x$PCLS" = xt ; then
410 command="$command -pcls"
411 fi
412 fi
413 printf 'genmake ... '
414 eval $command > genmake.tr_log 2>&1
415 RETVAL=$?
416 # Reduce the size of the testing emails!
417 head -100 Makefile > $CDIR/Makefile_head
418 if test "x$RETVAL" != x0 ; then
419 tail genmake.tr_log
420 echo "genmakemodel: genmake failed"
421 cp genmake.log genmake_* genmake.tr_log $CDIR
422 return 1
423 else
424 echo "successful"
425 fi
426 )
427 fi
428 }
429
430 makeclean()
431 {
432 # makeclean directory
433 if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
434 if test "x$NOCLEAN" = xt ; then
435 echo "make Clean skipped!"
436 else
437 (
438 cd $1;
439 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
440 if test -r Makefile ; then
441 printf 'clean build-dir: make Clean ... '
442 $MAKE Clean >> make.tr_log 2>&1
443 RETVAL=$?
444 if test "x$RETVAL" != x0 ; then
445 tail make.tr_log
446 echo "makeclean: \"make Clean\" failed"
447 cp make.tr_log genmake.log genmake.tr_log $CDIR
448 return 1
449 fi
450 echo successful
451 else
452 echo ''
453 fi
454 exit 0
455 )
456 fi
457 }
458
459 run_clean()
460 {
461 # run_clean directory
462 if test "x$NOCLEAN" = xt ; then
463 echo "run_clean skipped!"
464 else
465 (
466 cd $1;
467 printf 'clean run-dir ... '
468 # part of what is done after "make clean" when doing "make CLEAN"
469 find . -name "*.meta" -exec rm {} \;
470 find . -name "*.data" -exec rm {} \;
471 find . -name "fort.*" -exec rm {} \;
472 find . -type l -exec rm {} \;
473 #- should remove executable only if sym-link (already done above)
474 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
475 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
476 rm -f *_MIT_CE_000.opt0000 costfunction*0000
477 rm -f oad_cp.[0-9][0-9][0-9].?????
478 rm -rf mnc_test_*
479 echo successful
480 exit 0
481 )
482 fi
483 }
484
485 makedependmodel()
486 {
487 # makedependmodel directory
488 if test "x$NODEPEND" = xt ; then
489 echo "make depend skipped!"
490 else
491 (
492 cd $1;
493 printf 'make depend ... '
494 $MAKE depend >> make.tr_log 2>&1
495 RETVAL=$?
496 if test "x$RETVAL" != x0 ; then
497 tail make.tr_log
498 echo "makedependmodel: make depend failed"
499 cp make.tr_log genmake.log genmake.tr_log $CDIR
500 return 1
501 else
502 echo successful
503 fi
504 )
505 fi
506 }
507
508 makemodel()
509 {
510 # makemodel directory
511 (
512 mk_fail=0
513 if test "x$NOMAKE" = xt ; then
514 cd $1;
515 if test -x $EXECUTABLE ; then
516 echo "make skipped!"
517 else
518 echo "no executable!"
519 mk_fail=3
520 fi
521 else
522 cd $1;
523 if test -r Makefile ; then
524 printf 'make ... '
525 if test "x$REPLMAKE" = x ; then
526 $MAKE $TARG >> make.tr_log 2>&1
527 else
528 $REPLMAKE $TARG >> make.tr_log 2>&1
529 fi
530 RETVAL=$?
531 if test "x$RETVAL" != x0 ; then
532 tail make.tr_log
533 echo failed
534 cp genmake.log genmake.tr_log $CDIR
535 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
536 rm -f $EXECUTABLE
537 mk_fail=1
538 else
539 echo successful
540 fi
541 else
542 echo "no Makefile !"
543 mk_fail=2
544 fi
545 fi
546 if test $KIND = 1 -a -f taf_ftl.log ; then
547 head -1 taf_ftl.log >> $CDIR"/summary.txt"
548 fi
549 if test $KIND = 2 -a -f taf_ad.log ; then
550 head -1 taf_ad.log >> $CDIR"/summary.txt"
551 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
552 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
553 if test -f taf_output ; then
554 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
555 n3er=`grep -c '\*ERROR\* ' taf_output`
556 nerr=`expr $nerr + $n2er + $n3er`
557 fi
558 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
559 >> $CDIR"/summary.txt"
560 fi
561 if test $mk_fail != 0 ; then return $mk_fail ; fi
562 )
563 }
564
565 mk_mpi_size()
566 {
567 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
568 #
569 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
570 # for an MPI build with no more than proc_Nb processors ;
571 # ensure that enough tiles per proc (nSx,nSy) remain for the given
572 # number of threads (nTx,nTy) ;
573 # return the effective number of processors.
574
575 inp=$1
576 out=$2
577 np=$3
578 tx=$4
579 ty=$5
580 tmp=TTT.$$
581
582 # dirX : select with direction to favor in MPI process repartition
583 # dirX=1 : prefer to put more proc in X direction
584 # dirX=0 : prefer to put more proc in Y direction
585 dirX=0
586
587 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
588 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
589 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
590 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
591
592 #- for each direction, assume # of threads is a multiple of total number of tiles
593 nx=$px
594 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
595 nx=`expr $sx \* $px / $tx`
596 if [ $verbose -gt 1 ]; then
597 echo " change px from $px to $nx to accommodate $tx threads"
598 fi
599 fi
600 ny=$py
601 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
602 ny=`expr $sy \* $py / $ty`
603 if [ $verbose -gt 1 ]; then
604 echo " change py from $py to $ny to accommodate $ty threads"
605 fi
606 fi
607 #- find the largest divisor of input_file proc Nb, but not larger than $np
608 pp=0
609 i=1
610 while [ $i -le $nx ] ; do
611 if [ `expr $nx % $i` -eq 0 ] ; then
612 j=1
613 while [ $j -le $ny ] ; do
614 if [ `expr $ny % $j` -eq 0 ] ; then
615 ij=`expr $i \* $j`
616 if [ $ij -gt $pp ] ; then
617 flag=1
618 elif [ $ij -eq $pp ] ; then
619 flag=$dirX
620 else
621 flag=0
622 fi
623 if test $flag = 1 ; then
624 if [ $ij -le $np ] ; then
625 ix=$i ; jy=$j ; pp=$ij
626 #echo " ix,jy= $ix,$jy"
627 fi
628 fi
629 fi
630 j=`expr $j + 1`
631 done
632 fi
633 i=`expr $i + 1`
634 done
635
636 #- create new SIZE.h type file:
637 sx=`expr $sx \* $px / $ix`
638 sy=`expr $sy \* $py / $jy`
639 if [ $verbose -gt 1 ]; then
640 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
641 fi
642 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
643 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
644 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
645 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
646 rm -f $tmp
647 return $pp
648 }
649
650 symlink_mpifiles()
651 {
652 # Put special links so that MPI specific files are used
653 # This MUST be invoked between makeclean and makelinks because
654 # the Makefile will link to non-mpi files by default
655
656 dir=$1
657 code_dir=$2
658 build_dir=$dir/$3
659
660 # These are files that should replace their counter-part when using -mpi
661 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
662
663 for ii in $MPI_FILES ; do
664 i=`echo $ii | sed 's:^\./::'`
665 name=`echo $i | sed 's:_mpi::'`
666 file="../$code_dir/$i"
667 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
668
669 # Is this an MPI run?
670 if test "x$MPI" = x0 ; then
671 # NO: We undo any _mpi symbolically linked files
672 if test -L $build_dir/$name ; then
673 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
674 RETVAL=$?
675 if test "x$RETVAL" = x0 ; then
676 if [ $verbose -gt 1 ]; then
677 echo " Un-linking $name from ../$code_dir" ; fi
678 rm -f $build_dir/$name
679 fi
680 fi
681 else
682 # YES: We symbolically link these files to the build
683 # dir so long as there is no real file in place
684 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
685 RETVAL=$?
686 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
687 if test "x$RETVAL" != x0 ; then
688 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
689 if test ! -r $build_dir/$name ; then
690 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
691 (cd $build_dir; ln -sf $file $name)
692 fi
693 fi
694 fi
695 done
696 }
697
698 linkdata()
699 {
700 # linkdata run_dir input_dir_1 input_dir_2 ...
701 #
702 # symbolically link data files to run directory
703 if test -d $1 ; then
704 (
705 cd $1 ; shift
706 echo 'linkdata from dirs:' $*
707 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
708 for xx in $inpMPI ; do
709 if test -r "../"$1"/"$xx ; then
710 # found 1 _mpi sfx file in 1rst input dir and it is readable
711 yy=`echo $xx | sed 's:\.mpi$::'`
712 if test "x$MPI" = "x0" ; then
713 # not mpi test: remove symbolic link
714 if test -h $yy ; then rm -f $yy ; fi
715 else
716 # mpi test: remove symbolic link & link .mpi sfx file
717 if test -h $yy ; then rm -f $yy ; fi
718 if test ! -r $yy ; then
719 ln -sf "../"$1"/"$xx $yy ;
720 printf " $xx" 1>&2
721 fi
722 fi
723 fi
724 done
725 if test -r "../"$1"/eedata.mth" ; then
726 # found eedata.mth in 1rst input dir and it is readable
727 if test "x$MULTI_THREAD" = "xt" ; then
728 # multi-threaded test: remove symbolic link & link eedata.mth
729 if test -h eedata ; then rm -f eedata ; fi
730 if test ! -r eedata ; then
731 ln -sf "../"$1"/eedata.mth" eedata ;
732 printf ' eedata.mth' 1>&2
733 fi
734 else
735 # not multi-threaded test: remove eedata symbolic link
736 if test -h eedata ; then rm -f eedata ; fi
737 fi
738 fi
739 prevDir='NONE'
740 for ldir in $* ; do
741 if test -d "../"$ldir -a $ldir != $prevDir ; then
742 printf " ldir=${ldir}:" 1>&2
743 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
744 for i in $files ; do
745 if test ! -d "../"$ldir/$i ; then
746 if test ! -r $i ; then
747 printf ' '$i 1>&2
748 ln -sf "../"$ldir"/"$i $i
749 fi
750 fi
751 done
752 printf ' ;' 1>&2
753 if test -x "../"$ldir"/"prepare_run ; then
754 "../"$ldir"/"prepare_run 1>&2
755 else
756 echo '' 1>&2
757 fi
758 fi
759 prevDir=$ldir
760 done
761 )
762 fi
763 }
764
765 runmodel()
766 {
767 # runmodel directory
768 #
769 # runs $COMMAND in "directory"
770 # (where "$COMMAND" is relative to "directory")
771 (
772 cd $1
773 printf 'runmodel in %s ... ' $1
774 if test "x$MPI" != x0 ; then
775 #- adjust the MPI run command with the right number of Procs
776 #echo '' ; echo " COMMAND='$COMMAND'"
777 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
778 if test "x$MPI_MFILE" != x ; then
779 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
780 fi
781 #echo " COMMAND='$COMMAND'"
782 fi
783 if test -L $EXECUTABLE ; then
784 if test -x "../"$builddir"/"$EXECUTABLE ; then
785 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
786 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
787 else rm -f $EXECUTABLE
788 fi
789 fi
790 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
791 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
792 ln -sf "../"$builddir"/"$EXECUTABLE .
793 fi
794 if test ! -x $EXECUTABLE ; then
795 rm -f $RUNLOG ; touch $RUNLOG
796 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
797 echo " no executable:" $EXECUTABLE >> $RUNLOG
798 RETVAL=8
799 ENDVAL=-1
800 else
801 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
802 # output do not exist or is older than executable:
803 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
804 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
805 #- Divided Adjoint Run:
806 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
807 if test $KIND = 2 -a -f run_ADM_DIVA ; then
808 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
809 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
810 eval "let $adm_diva_nb"
811 if [ $add_DIVA_runs -ge 1 ] ; then
812 rm -f costf* divided.ctrl snapshot*
813 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
814 for ii in `seq 1 $add_DIVA_runs` ; do
815 ( eval $COMMAND ) >> $RUNLOG 2>&1
816 echo " additional DIVA run # $ii : done" >> $RUNLOG
817 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
818 done
819 fi
820 fi
821 #- special DIVA processing ends here
822 ( eval $COMMAND ) >> $RUNLOG 2>&1
823 RETVAL=$?
824 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
825 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
826 find . -name "*.meta" -exec rm {} \;
827 find . -name "*.data" -exec rm {} \;
828 rm -rf mnc_test_*
829 fi
830 else
831 RETVAL=0
832 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
833 touch $RUNLOG
834 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
835 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
836 fi
837 fi
838 rm -f run.log_tmp
839 #- in all cases where OutputFile exists, report SIZE and time
840 if test -f $OUTPUTFILE ; then
841 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
842 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
843 grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
844 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
845 fi
846 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
847 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
848 echo successful
849 printf '=> output from running in %s :\n' $1 1>&2
850 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
851 return 0
852 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
853 #-- for some weird cases (run is finihed but with error code)
854 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
855 printf '=> output from running in %s :\n' $1 1>&2
856 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
857 return 0
858 else
859 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
860 printf '=> output from running in %s :\n' $1 1>&2
861 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
862 cp $RUNLOG $CDIR"/"$RUNLOG
863 return 1
864 fi
865 )
866 }
867
868 createcodelet()
869 {
870 # create codelet for comparing model output
871
872 printf "creating the comparison code (using CC=$CC)... "
873 cat > tr_cmpnum.c <<EOF
874 #include <stdio.h>
875 #include <math.h>
876 int main( int argc, char** argv ) {
877 int linnum,cmplin,best,lncnt;
878 double a,b,abave,relerr;
879 best = -22;
880 lncnt = 0;
881 while( 1 & ( (lncnt+=1) < 999 ) ) {
882 scanf("%d", &linnum);
883 if (linnum == -1) break;
884 scanf("%lf", &a); scanf("%lf", &b);
885 abave = 0.5*(fabs(a)+fabs(b));
886 if ( abave == abave ) {
887 if (abave > 0.0) {
888 relerr=fabs(a-b)/abave;
889 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
890 else { cmplin = -16 ; }
891 best = (best > cmplin) ? best : cmplin; }
892 else { cmplin = -22 ; }
893 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
894 }
895 else {
896 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
897 break; }
898 }
899 if (lncnt == 999) best=-29;
900 if (linnum != -1) best=-99;
901 printf("%d\n", -best);
902 return 0;
903 }
904 EOF
905 $CC -o tr_cmpnum tr_cmpnum.c -lm
906
907 if [ -x ./tr_cmpnum ]; then
908 echo "OK"
909 return 0
910 else
911 echo
912 echo "ERROR: failed to compile comparison code -- please specify"
913 echo " a C compiler using the CC environment variable."
914 exit 1
915 fi
916 }
917
918 formatresults()
919 {
920 # formatresults expt genmake depend make run results*
921
922 nm=$1
923 printf '%s %s %s %s' $2 $3 $4 $5
924 shift; shift; shift; shift; shift;
925 listPrt=$@
926 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
927 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
928 printf '%3s' $listPrt
929 # line below does not work on hp-ux_ia64 : do those substitutions later on
930 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
931
932 if [ $xx = '..' ]; then
933 printf ' N/O '
934 elif [ $xx = '--' ]; then
935 printf ' N/O '
936 elif [ $xx = 99 ]; then
937 printf ' N/O '
938 else
939 if [ $xx -ge $MATCH_CRIT ]; then
940 printf ' pass'
941 else
942 printf ' FAIL'
943 fi
944 fi
945 printf ' %s' $nm
946 if test $KIND = 2 ; then
947 #-- apppend taf repport summary:
948 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
949 if test $tafrep = 1 ; then
950 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
951 fi
952 fi
953 printf '\n'
954
955 }
956
957 scandirs()
958 {
959 if [ $# -eq 1 ]; then
960 for arg in * ; do
961 #test -f $arg/$1 && echo $arg
962 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
963 done
964 else
965 echo $*
966 fi
967 }
968
969
970 check_eedata()
971 {
972 # check_eedata eedata size.h
973 if [ $# -eq 2 ] ; then
974 if test -f $1 -a -f $2 ; then
975 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
976 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
977 if test "x$nx" = x ; then
978 rx=10
979 else
980 rx=`expr $sx % $nx`
981 fi
982 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
983 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
984 if test "x$ny" = x ; then
985 ry=20
986 else
987 ry=`expr $sy % $ny`
988 fi
989 echo `expr $rx + $ry`
990 else
991 echo '-1'
992 fi
993 elif [ $# -eq 1 ] ; then
994 if test -f $1 ; then
995 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
996 if test "x$nx" = x ; then nx=1 ; fi
997 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
998 if test "x$ny" = x ; then ny=1 ; fi
999 #echo $nx $ny
1000 echo $nx
1001 else
1002 echo '-1'
1003 fi
1004 else
1005 echo '-2'
1006 fi
1007
1008 }
1009
1010 ###############################################################################
1011
1012
1013 # Default properties
1014 debug=0
1015 verbose=1
1016 NBLINES_MKLOG=16000
1017
1018 OptLev=1
1019 GSL=f
1020
1021 CLEANUP=f
1022 NORUN=f
1023 QUICK=f
1024 NOMAKE=f
1025 NOGENMAKE=f
1026 NOCLEAN=f
1027 NODEPEND=f
1028 POSTCLEAN=0
1029
1030 BASH=
1031 OPTFILE=NONE
1032 ADDRESSES=
1033 TESTDIRS=
1034 SKIPDIRS=
1035 MPACKDIR="../tools/mpack-1.6"
1036 HAVE_MPACK=
1037 MPACK=
1038 SENDCMD=
1039 SAVDIR='.'
1040 COMMAND=
1041 MKDEPEND=
1042 if test "x$MAKE" = x ; then
1043 MAKE=make
1044 fi
1045 REPLMAKE=
1046 if test "x$CC" = x ; then
1047 CC=cc
1048 fi
1049 JOBS=
1050 TARG=
1051 MPI=0
1052 MPI_MFILE=
1053 MULTI_THREAD=f
1054 OUTDIR=
1055 DELDIR=
1056 USE_R4=
1057 EXTRFLG=
1058
1059 #- type of testing (KIND):
1060 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1061 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1062 KIND=0
1063
1064 # list of pTracers to check for monitor output
1065 PTRACERS_NUM="1 2 3 4 5"
1066
1067 MATCH_CRIT=10
1068
1069 printf "parsing options... "
1070
1071 ac_prev=
1072 for ac_option ; do
1073
1074 # If the previous option needs an argument, assign it.
1075 if test -n "$ac_prev"; then
1076 eval "$ac_prev=\$ac_option"
1077 ac_prev=
1078 continue
1079 fi
1080
1081 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1082
1083 case $ac_option in
1084
1085 -help | --help | -h | --h) usage ;;
1086
1087 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1088 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1089
1090 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1091 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1092 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1093 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1094
1095 -send | --send ) ac_prev=SENDCMD ;;
1096 -send=* | --send=* ) SENDCMD=$ac_optarg ;;
1097 -savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
1098 -savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
1099
1100 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1101 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1102 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1103 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1104
1105 -bash | --bash | -b | --b) ac_prev=BASH ;;
1106 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1107
1108 -command | --command | -c | --c) ac_prev=COMMAND ;;
1109 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1110
1111 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1112 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1113
1114 -make | --make | -m | --m) ac_prev=MAKE ;;
1115 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1116
1117 -repl_mk | --repl_mk ) ac_prev=REPLMAKE ;;
1118 -repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;;
1119
1120 -odir | --odir) ac_prev=OUTDIR ;;
1121 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1122
1123 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1124 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1125
1126 -match | --match ) ac_prev=MATCH_CRIT ;;
1127 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1128
1129 -j | --j) ac_prev=JOBS ;;
1130 -j=* | --j=*) JOBS=$ac_optarg ;;
1131
1132 -ef | --ef) ac_prev=EXTRFLG ;;
1133 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1134
1135 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1136
1137 -norun | --norun | -nr | --nr) NORUN=t ;;
1138 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1139 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1140 -quick | --quick | -q | --q) QUICK=t ;;
1141 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1142 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1143 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1144
1145 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1146 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1147
1148 -mpi | --mpi) MPI=2 ;;
1149 -MPI | --MPI) ac_prev=MPI ;;
1150 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1151
1152 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1153 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1154
1155 -mth) MULTI_THREAD=t ;;
1156
1157 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1158 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1159 fi ;;
1160 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1161 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1162 fi ;;
1163 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1164 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1165 fi ;;
1166
1167 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1168 printf " ... " ;;
1169 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1170 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1171 -fast) OptLev=`expr $OptLev \* 2` ;;
1172 -devel) OptLev=0 ;;
1173 -gsl) GSL=t ;;
1174
1175 -verbose) verbose=2 ;;
1176 -debug) debug=1 ;;
1177 -quiet) verbose=0 ;;
1178
1179 -deldir | -dd) DELDIR=t ;;
1180
1181 -use_r4|-ur4) USE_R4=t ;;
1182
1183 -ts) TS=t;;
1184 -papis) PAPIS=t;;
1185 -pcls) PCL=t;;
1186
1187 -*) echo "Error: unrecognized option: "$ac_option
1188 usage ;;
1189 *) echo "Error: unrecognized argument: "$ac_option
1190 usage ;;
1191
1192 esac
1193
1194 done
1195
1196 if test "x$QUICK" = xt ; then
1197 NOGENMAKE=t
1198 NOCLEAN=t
1199 NODEPEND=t
1200 fi
1201
1202 #- check length of MPI machine file:
1203 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1204 if test -r $MPI_MFILE ; then
1205 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1206 if [ $nl -lt $MPI ] ; then
1207 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1208 usage
1209 fi
1210 if [ $verbose -gt 1 ]; then
1211 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1212 fi
1213 else
1214 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1215 usage
1216 fi
1217 fi
1218
1219 #- setting for forward or ADM testing
1220 if test $KIND = 1 ; then
1221 TARG=ftlall
1222 code_dir=code_ad
1223 inputdir=input_ad
1224 ref_outp="output_tlm.txt"
1225 EXECUTABLE="mitgcmuv_ftl"
1226 elif test $KIND = 2 ; then
1227 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1228 code_dir=code_ad
1229 inputdir=input_ad
1230 ref_outp="output_adm.txt"
1231 EXECUTABLE="mitgcmuv_ad"
1232 elif test $KIND = 4 ; then
1233 TARG=adAll
1234 code_dir=code_oad
1235 inputdir=input_oad
1236 ref_outp="output_oadm.txt"
1237 EXECUTABLE="mitgcmuv_ad"
1238 else
1239 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1240 code_dir=code
1241 inputdir=input
1242 ref_outp="output.txt"
1243 EXECUTABLE="mitgcmuv"
1244 fi
1245
1246 xx=`echo $TESTDIRS | awk '{print $1}'`
1247 if test "x$TESTDIRS" = x ; then
1248 LIST=`scandirs results/$ref_outp`
1249 elif test $xx = 'start_from' ; then
1250 xx=`echo $TESTDIRS | awk '{print $2}'`
1251 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1252 else
1253 #- expand group of experiments:
1254 LIST=" "
1255 for xx in $TESTDIRS
1256 do
1257 case $xx in
1258 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1259 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1260 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1261 ;;
1262 'tutorials')
1263 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1264 *) LIST=${LIST}" "$xx ;;
1265 esac
1266 done
1267 fi
1268 #echo 'LIST='${LIST}'<'
1269 #- skip dirs, remove duplicate and non-directory:
1270 TESTDIRS=" "
1271 count=0
1272 for xx in $LIST
1273 do
1274 yy=`echo $SKIPDIRS | grep -c $xx`
1275 if test $yy = 0 ; then
1276 if test -d $xx ; then
1277 yy=`echo $TESTDIRS | grep -c $xx`
1278 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1279 else count=1 ;
1280 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1281 fi
1282 else
1283 if test $count = 1 ; then echo -n ", \"$xx\""
1284 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1285 fi
1286 fi
1287 done
1288 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1289 #echo 'TESTDIRS='${TESTDIRS}'<'
1290
1291 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1292 OPTFILE=$MITGCM_OF
1293 fi
1294
1295 LOC_MFILE='tr_mpi_mfile'
1296 RUNLOG="run.tr_log"
1297 if test "x$MPI" = x0 ; then
1298 OUTPUTFILE=$ref_outp
1299 if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi
1300 else
1301 OUTPUTFILE="STDOUT.0000"
1302 if test "x$COMMAND" = x ; then COMMAND="mpirun -v -np TR_NPROC ./$EXECUTABLE" ; fi
1303 fi
1304
1305 echo "OK (COMMAND='$COMMAND')"
1306
1307 TMP=./tr_$$
1308 #- try to put temporary files in system-local /tmp dir
1309 #TMP=/tmp/tr_$$
1310 #touch $TMP ; retVal=$?
1311 #if [ $retVal -eq 0 ] ; then
1312 # if test ! -r $TMP ; then TMP=./tr_$$ ; fi
1313 #else
1314 # TMP=./tr_$$
1315 #fi
1316 #rm -f $TMP
1317 #if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
1318
1319 # set the Default List of output variables to be checked:
1320 # (use default or load experiment-specific list from file "tr_checklist")
1321 # content : 1rst = main variable used to decide if it pass or FAIL
1322 # others = number of matching digits to be printed in summary.txt
1323 if test $KIND = 1 ; then
1324 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1325 EMPTY_RESULTS='.. .. ..'
1326 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1327 elif test $KIND = 2 -o $KIND = 4 ; then
1328 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1329 EMPTY_RESULTS='.. .. ..'
1330 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1331 else
1332 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1333 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1334 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1335 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1336 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1337 fi
1338
1339 # create the FORTRAN comparison code
1340 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1341 echo "skipping comparison code build"
1342 else
1343 createcodelet
1344 fi
1345
1346 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1347 if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
1348 echo "skipping mpack build"
1349 else
1350 build_mpack
1351 if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
1352 fi
1353
1354 # Create a uniquely named directory to store results
1355 CMDLINE=$0
1356 for xx in "$@" ; do nw=`echo $xx | wc -w`
1357 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1358 nb=`echo $xx | grep -c '='`
1359 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1360 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1361 CMDLINE="$CMDLINE $yy" ; fi
1362 fi
1363 done
1364 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1365 MACH=`hostname`
1366 UNAMEA=`uname -a`
1367 DATE=`date +%Y%m%d`
1368 BASE="tr_"$MACH"_"$DATE"_"
1369 if test "x$OUTDIR" != x ; then
1370 BASE="tr_"$OUTDIR"_"$DATE"_"
1371 else
1372 short_name=`hostname | sed 's/\..*$//'`
1373 BASE="tr_"$short_name"_"$DATE"_"
1374 fi
1375 DNUM=0
1376 DRESULTS="$BASE$DNUM"
1377 while test -e $DRESULTS ; do
1378 DNUM=$(( $DNUM + 1 ))
1379 DRESULTS="$BASE$DNUM"
1380 done
1381 mkdir $DRESULTS
1382 RETVAL=$?
1383 if test "x$RETVAL" != x0 ; then
1384 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1385 exit 1
1386 fi
1387 SUMMARY="$DRESULTS/summary.txt"
1388 start_date=`date`
1389 echo $start_date > $SUMMARY
1390 echo 'run:' $CMDLINE >> $SUMMARY
1391 echo 'on :' $UNAMEA >> $SUMMARY
1392
1393 of_path=
1394 if test "x$OPTFILE" != xNONE ; then
1395 if test -r $OPTFILE ; then
1396 # get the path
1397 path=${OPTFILE%/*}
1398 if test "x$path" = x ; then
1399 of_path=`pwd`
1400 else
1401 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1402 fi
1403 file=${OPTFILE##*/}
1404 OPTFILE=$of_path/$file
1405 cp $OPTFILE $DRESULTS
1406 echo >> $SUMMARY
1407 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1408 else
1409 echo | tee -a $SUMMARY
1410 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1411 exit 1
1412 fi
1413 else
1414 echo >> $SUMMARY
1415 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1416 #-note: to be filled later after 1rst run
1417 fi
1418 echo
1419 echo >> $SUMMARY
1420 if test $KIND = 0 ; then
1421 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1422 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1423 line_1="G D M c m s m s m s m s"
1424 line_2="e p a R g m m e . m m e . m m e . m m e ."
1425 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1426 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1427 for ii in $PTRACERS_NUM ; do
1428 line_0="$line_0 --PTR 0"$ii"--"
1429 line_1="$line_1 m s"
1430 line_2="$line_2 m m e ."
1431 line_3="$line_3 i a a d"
1432 line_4="$line_4 n x n ."
1433 done
1434 else
1435 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1436 if test $KIND = 1 ; then
1437 #echo "TANGLIN=true" >> $SUMMARY
1438 echo "TangLin generated by TAF" >> $SUMMARY
1439 elif test $KIND = 3 ; then
1440 echo "TangLin generated by OpenAD" >> $SUMMARY
1441 elif test $KIND = 2 ; then
1442 #echo "ADJOINT=true" >> $SUMMARY
1443 echo "Adjoint generated by TAF" >> $SUMMARY
1444 else
1445 echo "Adjoint generated by OpenAD" >> $SUMMARY
1446 fi
1447 if test $KIND = 1 -o $KIND = 3 ; then
1448 line_1="G D M C T F"
1449 line_2="e p a R o L D"
1450 else
1451 line_1="G D M C A F"
1452 line_2="e p a R o d D"
1453 fi
1454 line_3="n n k u s G G"
1455 line_4="2 d e n t r r"
1456 echo >> $SUMMARY
1457 fi
1458 if test "x$CLEANUP" != xt ; then
1459 echo "$line_0" | tee -a $SUMMARY
1460 echo "$line_1" | tee -a $SUMMARY
1461 echo "$line_2" | tee -a $SUMMARY
1462 echo "$line_3" | tee -a $SUMMARY
1463 echo "$line_4" | tee -a $SUMMARY
1464 echo "" | tee -a $SUMMARY
1465 fi
1466 echo "-------------------------------------------------------------------------------"
1467
1468 # ...and each test directory...
1469 for dir in $TESTDIRS ; do
1470
1471 # set builddir & rundir:
1472 builddir="build"
1473 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1474 rundir="run"
1475 pfxdir="tr_$rundir"
1476 if test ! -d $dir/$rundir ; then
1477 rundir=$builddir
1478 fi
1479 CODE_DIR=$dir/$code_dir
1480 BUILD_DIR=$dir/$builddir
1481
1482 # Cleanup only!
1483 if test "x$CLEANUP" = xt ; then
1484 echo -n ' --- dir:' $BUILD_DIR ': '
1485 makeclean $BUILD_DIR
1486 ( cd $BUILD_DIR
1487 rm -f $EXECUTABLE *.bak
1488 rm -f genmake_state genmake_*optfile genmake.log
1489 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1490 rm -rf mpi_headers
1491 )
1492 if test -d $dir/$rundir/CVS ; then
1493 echo -n ' --- dir:' $dir/$rundir ': '
1494 run_clean $dir/$rundir
1495 fi
1496 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1497 ttd=`echo $trdir | wc -w`
1498 if test $ttd != 0 ; then
1499 echo ' --- rm dir:' $trdir
1500 ( cd $dir ; rm -rf $trdir )
1501 fi
1502 continue
1503 fi
1504
1505 # Verify that the testdir exists and contains previous
1506 # results in the correct location--or skip this directory!
1507 fout=$dir"/results/"$ref_outp
1508 #if test ! -r $fout ; then
1509 if test ! -r $fout -a ! -r ${fout}.gz ; then
1510 echo "can't read \"$fout\" -- skipping $dir"
1511 continue
1512 fi
1513
1514 # Check for specific files for particular type of run
1515
1516 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1517 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1518 continue
1519 fi
1520 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1521 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1522 continue
1523 fi
1524
1525 if test "x$MPI" != "x0" ; then
1526 ntx=1 ; nty=1
1527 if test "x$MULTI_THREAD" = "xt" ; then
1528 ff=$dir"/input/eedata.mth"
1529 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1530 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1531 if test "x$ntx" = x ; then ntx=1 ; fi
1532 if test "x$nty" = x ; then nty=1 ; fi
1533 fi
1534 #- create new SIZE.h with no more than '$MPI' Procs
1535 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1536 LOC_NPROC=$?
1537 ( cd $BUILD_DIR
1538 if test -r SIZE.h.mpi ; then
1539 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1540 else RETVAL=1
1541 fi
1542 if test "x$RETVAL" = x0 ; then
1543 rm -f tr_size.mpi
1544 else
1545 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1546 fi
1547 )
1548 if test "x$MPI_MFILE" != x ; then
1549 #- create new MPI machine-file with the right number of Procs
1550 rm -f $LOC_MFILE
1551 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1552 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1553 if [ $nl -lt $LOC_NPROC ] ; then
1554 rm -f $LOC_MFILE
1555 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1556 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1557 fi
1558 if [ $verbose -gt 1 ]; then
1559 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1560 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1561 fi
1562 fi
1563 if test "x$MULTI_THREAD" = "xt" ; then
1564 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1565 if test $retv != 0 ; then
1566 echo "input/eedata.mth tiling misfit -- skipping $dir"
1567 continue
1568 fi
1569 fi
1570 fi
1571
1572 # Check whether there are "extra runs" for this testdir
1573 extra_runs=
1574 if test "x$NORUN" = xf ; then
1575 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1576 fi
1577 #echo "ex_run_dirs='$ex_run_dirs'"
1578 for exd in $ex_run_dirs ; do
1579 name=`echo $exd | sed -e "s/$inputdir\.//"`
1580 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1581 outf="$dir/results/$refExOut"
1582 if test -r $outf -o -r ${outf}.gz ; then
1583 if test "x$MULTI_THREAD" = "xt" ; then
1584 if test -r $dir"/"$exd"/eedata.mth" ; then
1585 if test "x$MPI" = "x0" ; then
1586 extra_runs="$extra_runs $name"
1587 else
1588 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1589 if test $retv = 0 ; then
1590 extra_runs="$extra_runs $name"
1591 else
1592 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1593 fi
1594 fi
1595 #else echo $dir"/"$exd"/eedata.mth: not found"
1596 fi
1597 else
1598 extra_runs="$extra_runs $name"
1599 fi
1600 fi
1601 done
1602
1603 echo
1604 if test "x$extra_runs" = "x" ; then
1605 echo "Experiment: $dir"
1606 else
1607 echo "Experiment: $dir ; extra_runs=$extra_runs"
1608 fi
1609 echo
1610 unset genmake makedepend make run
1611 results=$EMPTY_RESULTS
1612
1613 # Create an output dir & summary.txt file for each tested experiment (tdir)
1614 locDIR=$DRESULTS"/"$dir
1615 mkdir $locDIR
1616 #- report to this experiment local summary file ---
1617 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1618 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1619 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1620 CDIR=`pwd`"/$locDIR"
1621
1622 if test "x$NORUN" = xt ; then
1623 run=N
1624 genmakemodel $dir/$builddir && genmake=Y \
1625 && makeclean $dir/$builddir \
1626 && symlink_mpifiles $dir $code_dir $builddir \
1627 && makedependmodel $dir/$builddir && makedepend=Y \
1628 && makemodel $dir/$builddir && make=Y
1629 else
1630 genmakemodel $dir/$builddir && genmake=Y \
1631 && makeclean $dir/$builddir \
1632 && symlink_mpifiles $dir $code_dir $builddir \
1633 && makedependmodel $dir/$builddir && makedepend=Y \
1634 && makemodel $dir/$builddir && make=Y \
1635 && run_clean $dir/$rundir \
1636 && linkdata $dir/$rundir $inputdir \
1637 && runmodel $dir/$rundir && run=Y \
1638 && results=`testoutput_run $dir $rundir $ref_outp`
1639 fi
1640 #echo "results='$results'"
1641
1642 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1643 echo 1>&2
1644 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1645 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1646
1647 for ex in $extra_runs ; do
1648 unset run
1649 results=$EMPTY_RESULTS
1650 # reference output file
1651 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1652 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1653 locDIR=$DRESULTS"/"$dir"."$ex
1654 mkdir $locDIR
1655 #- report to this experiment local summary file ---
1656 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1657 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1658 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1659 CDIR=`pwd`"/$locDIR"
1660 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1661 run_clean $dir/$pfxdir.$ex
1662 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1663 runmodel $dir/$pfxdir.$ex && run=Y \
1664 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1665 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1666 echo 1>&2
1667 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1668 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1669 if test "x$POSTCLEAN" = x2 ; then
1670 run_clean $dir/$pfxdir.$ex
1671 fi
1672 done
1673
1674 if test ! -f $DRESULTS"/"genmake_state ; then
1675 if test -f $dir/$builddir/Makefile ; then
1676 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1677 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1678 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1679 echo " $mkOpt" >> $DRESULTS/genmake_state
1680 if test "x$OPTFILE" = xNONE ; then
1681 eval $mkOpt
1682 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1683 $SUMMARY > tmp.tr_log
1684 RETVAL=$?
1685 if test "x$RETVAL" = x0 ; then
1686 cp -f tmp.tr_log $SUMMARY
1687 fi
1688 rm -f tmp.tr_log
1689 fi
1690 gmkLog=$dir/$builddir/genmake.log
1691 if test -r $gmkLog ; then
1692 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1693 RETVAL=$?
1694 if test "x$RETVAL" = x0 ; then
1695 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1696 echo "extract compiler version:" >> $DRESULTS/genmake_state
1697 sed -n '/Get compiler version/,/<-- compiler version/p' \
1698 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1699 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1700 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1701 >> $DRESULTS/genmake_state
1702 rm -f tmp.tr_log
1703 fi
1704 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1705 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1706 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1707 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1708 fi
1709 fi
1710 fi
1711 #postclean $dir/$builddir
1712 if test "x$POSTCLEAN" = x2 ; then
1713 makeclean $dir/$builddir \
1714 && run_clean $dir/$rundir
1715 fi
1716 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1717
1718 echo "-------------------------------------------------------------------------------"
1719
1720 done
1721
1722 printf "Start time: " >> $SUMMARY
1723 echo "$start_date" >> $SUMMARY
1724 printf "End time: " >> $SUMMARY
1725 date >> $SUMMARY
1726
1727 # If addresses were supplied and mpack built successfully, then try
1728 # to send email using mpack.
1729 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1730 echo "No results email was sent."
1731 else
1732 if test "x$SENDCMD" != x ; then
1733 if [ $verbose -gt 1 ]; then
1734 echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
1735 fi
1736 tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
1737 && gzip ${SAVDIR}/${DRESULTS}".tar" \
1738 && $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
1739 RETVAL=$?
1740 if test "x$RETVAL" != x0 ; then
1741 echo
1742 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1743 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1744 echo " summary of results from the directory \"$DRESULTS\"."
1745 echo
1746 else
1747 echo
1748 echo "An email containing results was sent to the following addresses:"
1749 echo " \"$ADDRESSES\""
1750 echo
1751 test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
1752 test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
1753 fi
1754 fi
1755 fi
1756
1757 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1758 rm -f tr_cmpnum.c tr_cmpnum
1759 fi
1760
1761 if test "x$CLEANUP" != xt ; then
1762 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1763 if test -e tr_out.txt ; then
1764 mv tr_out.txt tr_out.txt.old
1765 fi
1766 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1767 fi
1768
1769 if test "x$DELDIR" = xt ; then
1770 rm -rf $DRESULTS
1771 fi
1772 echo "======== End of testreport execution ========"

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