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Revision 1.194 - (show annotations) (download)
Thu Aug 22 19:34:15 2013 UTC (6 years, 9 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint64n
Changes since 1.193: +2 -2 lines
remove previous make.tr_log if doing genmake (instead of makedepend)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.193 2013/08/20 17:43:43 jahn Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " ---- type of test : ----"
15 echo " (-tlm) perform a Tangent Linear run"
16 echo " (-adm|-ad) perform an adjoint run"
17 echo " (-oad) perform an OpenAD adjoint run"
18 echo " (-mth) run multi-threaded (using eedata.mth)"
19 echo " (-mpi) use MPI to compile and run on 2 processors"
20 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
21 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
22 echo " (-command|-c) STRING command to run (needed for MPI run)"
23 echo " ---- testing options : ----"
24 echo " (-optfile|-of) STRING list of optfiles to use"
25 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
26 echo " DEF=off => use IEEE numerics option (if available)"
27 echo " (-devel) use optfile developement flags (if available)"
28 echo " (-gsl) compile with \"-gsl\" flag"
29 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
30 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
31 echo " (recognized groups: basic, tutorials)"
32 echo " (DEF=\"\" which test all)"
33 echo " (if list= 'start_from THIS_EXP' then"
34 echo " test THIS_EXP + all the following)"
35 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
36 echo " (DEF=\"\" which test all)"
37 echo " (-ts) provide timing information per timestep"
38 echo " (-papis) provide MFlop/s per timestep using PAPI"
39 echo " (-pcls) provide MFlop/s per timestep using PCL"
40 echo " ---- system options : ----"
41 echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
42 echo " (DEF=\"\" for \"bash\")"
43 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
44 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
45 echo " (-make|-m) STRING command to use for \"make\""
46 echo " (DEF=\"make\")"
47 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
48 echo " ---- output options : ----"
49 echo " (-match) NUMBER Matching Criteria (number of digits)"
50 echo " (DEF=\"$MATCH_CRIT\")"
51 echo " (-odir) STRING used to build output directory name"
52 echo " (DEF=\"hostname\")"
53 echo " (-addr|-a) STRING list of email recipients"
54 echo " (DEF=\"\" no email is sent)"
55 echo " (-send) STRING sending command (instead of using mpack)"
56 echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
57 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
58 echo " (DEF=\"../tools/mpack-1.6\")"
59 echo " -- do only some parts: --"
60 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
61 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
62 echo " (-obj) only produces objects (=norun & no executable)"
63 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
64 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
65 echo " (-nogenmake|-ng) skip the genmake stage"
66 echo " (-noclean|-nc) skip the \"make clean\" stage"
67 echo " (-nodepend|-nd) skip the \"make depend\" stage"
68 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
69 echo " (-deloutp|-do) delete output files after successful run"
70 echo " (-deldir|-dd) on success, delete the output directory"
71 echo
72 echo "and where STRING can be a whitespace-delimited list"
73 echo "such as:"
74 echo
75 echo " -t 'exp0 exp2 exp3' "
76 echo " -addr='abc@123.com testing@home.org'"
77 echo
78 echo "provided that the expression is properly quoted within the current"
79 echo "shell (note the use of single quotes to protect white space)."
80 echo
81 exit 1
82 }
83
84 # build the mpack utility
85 build_mpack()
86 {
87 printf "building the mpack utility... "
88 MPACK="$MPACKDIR/mpack"
89 if test ! -x $MPACK ; then
90 if test ! -d $MPACKDIR ; then
91 echo
92 echo "Error: can't find \"$MPACKDIR\""
93 echo " are you sure this program is being run in the correct "
94 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
95 echo
96 HAVE_MPACK=f
97 fi
98 if test "x$CC" = x ; then
99 export CC=cc
100 fi
101 printf "building mpack (using CC=$CC)... "
102 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
103 RETVAL=$?
104 if test "x$RETVAL" != x0 ; then
105 echo
106 echo "Error building the mpack tools at: $MPACK_DIR"
107 echo
108 HAVE_MPACK=f
109 else
110 rm -f tr_build_mpack.out
111 HAVE_MPACK=t
112 echo "done"
113 fi
114 else
115 HAVE_MPACK=t
116 echo "already exist"
117 fi
118 }
119
120 testoutput_var()
121 {
122 # testoutput_var dir s1 label subdir reference_output
123 #
124 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
125 # with same output from reference file $dir/$reference_output
126 # using search strings s1 and text label
127
128 if [ $debug -gt 0 ]; then
129 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
130 fi
131 if [ -r $1/$4/$OUTPUTFILE ]; then
132 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > ${TMP}a.txt
133 lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
134 if [ $lncntA -lt 2 ]; then
135 if [ $verbose -gt 0 ]; then
136 echo Not enough lines of output when searching for "$2" 1>&2
137 fi
138 rm -f ${TMP}a.txt ; return 99
139 fi
140 else
141 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
142 return 99
143 fi
144 if [ $debug -gt 0 ]; then
145 echo testoutput_var: grep "$2" $1/$5 1>&2
146 fi
147 grep "$2" $1/$5 | sed 's/.*=//' | cat -n > ${TMP}b.txt
148 lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
149 if [ $lncntB -lt 2 ]; then
150 if [ $verbose -gt 0 ]; then
151 echo Not enough lines of output when searching for "$2" 1>&2
152 fi
153 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
154 fi
155 if [ $lncntA -ne $lncntB ]; then
156 if [ $verbose -gt 0 ]; then
157 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
158 fi
159 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
160 fi
161 has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
162 if [ $has_nan -gt 0 ] ; then
163 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
164 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
165 fi
166 has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
167 if [ $has_inf -gt 0 ] ; then
168 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
169 rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
170 fi
171 if [ $debug -gt 0 ]; then
172 echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
173 fi
174 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
175 join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
176 if [ $debug -gt 0 ]; then
177 echo testoutput_var: compare_lines 1>&2
178 fi
179 if [ $verbose -gt 1 ]; then
180 cat ${TMP}c.txt 1>&2
181 fi
182 echo "-1" >> ${TMP}c.txt
183 digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
184 if [ $digits_of_similarity -eq 99 ]; then
185 if [ $verbose -gt 0 ]; then
186 echo testoutput_var: No comparison was available for \"$3\" 1>&2
187 fi
188 digits_of_similarity=99
189 else
190 if [ $verbose -gt 0 ]; then
191 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
192 fi
193 fi
194 rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
195
196 return $digits_of_similarity
197 }
198
199 testoutput_run()
200 {
201 # testoutput_run directory subdir reference_output
202 #
203 # test output from 1 run in "directory"
204 # --> same processing for adjoint & forward test
205 # default list of output variables to be checked:
206 # 1rst : main variable used to decide if it pass or FAIL
207 # others : number of matching digits to be printed in summary.txt
208 listChk=$DEF_CHECK_LIST
209 # load experiment-specific list from file "tr_checklist" (if it exist)
210 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
211 sVar=`echo $listChk | awk '{print $1}'`
212 # remove 1rst var and expand the list: + => min max mean s.d
213 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
214 | sed 's/+//g' | sed "s/^$sVar//"`
215 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
216 # set ref.outp file-name and, if compressed, uncompress it into subdir
217 refoutp=results/$3
218 if test ! -r $1/results/$3 ; then
219 if test -r $1/results/${3}.gz ; then
220 tmpNam1=$3
221 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
222 if test "x$tmpNam1" = "x$tmpNam2" ; then
223 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
224 fi
225 refoutp=$2/$tmpNam1
226 if [ $debug -gt 0 ]; then
227 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
228 fi
229 gzip -cd $1/results/${3}.gz > $1/$refoutp
230 else
231 echo "missing reference output file '$3' (.gz) in '$1/results/'"
232 fi
233 fi
234 # check for ptracer output in reference_output file :
235 if test $KIND = 0 ; then
236 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
237 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
238 for ii in $PTRACERS_NUM ; do
239 ptrfound=0
240 for jj in $ptr_mon ; do
241 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
242 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
243 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
244 done
245 if test $ptrfound = '1' ; then
246 eval "HAVE_PTR0"$ii"=t"
247 else
248 eval "HAVE_PTR0"$ii"=f"
249 # remove this ptr from the list of output variable to check
250 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
251 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
252 fi
253 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
254 done
255 fi
256 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
257 if test $tst != 1 ; then
258 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
259 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
260 echo "==> WARNING: in checked list:" $listVar 1>&2
261 #- put it back once:
262 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
263 fi
264 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
265 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
266 #---
267 allargs=""
268 for xx in $listVar
269 do
270 case $xx in
271 'PS') if [ $debug -gt 0 ]
272 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
273 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
274 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
275 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
276 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
277 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
278 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
279 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
280 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
281 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
282 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
283 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
284 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
285 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
286 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
287 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
288 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
289 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
290 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
291 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
292 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
293 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
294 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
295 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
296 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
297 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
298 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
299 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
300 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
301 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
302 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
303 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
304 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
305 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
306 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
307 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
308 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
309 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
310 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
311 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
312 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
313 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
314 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
315 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
316 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
317 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
318 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
319 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
320 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
321 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
322 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
323 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
324 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
325 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
326 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
327 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
328 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
329 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
330 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
331 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
332 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
333 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
334 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
335 esac
336 if test $xx = $sVar
337 then allargs="$allargs > $yy <"
338 else allargs="$allargs $yy"
339 fi
340 done
341
342 nbVar=`echo $listVar | awk '{print NF}'`
343 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
344 #-- fill line (up to standard length) with dot:
345 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
346 echo $allargs $adNul
347 else
348 echo $allargs
349 fi
350 # <-- same processing for adjoint & forward test
351 }
352
353 genmakemodel()
354 {
355 # genmakemodel directory
356 if test "x$NOGENMAKE" = xt ; then
357 echo "genmake skipped!"
358 else
359 if test "x$BASH" = x ; then
360 GENMAKE2="../../../tools/genmake2"
361 else
362 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
363 fi
364 (
365 cd $1;
366 command="$GENMAKE2 -ds -m $MAKE"
367 if test "x$MKDEPEND" != x ; then
368 command="$command -makedepend=$MKDEPEND"
369 fi
370 if test $KIND = 1 -o $KIND = 2 ; then
371 command="$command --mods=../code_ad"
372 elif test $KIND = 4 ; then
373 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods ../code_oad"
374 else
375 command="$command -mods=../code"
376 fi
377 if test "x$OPTFILE" != xNONE ; then
378 command="$command -optfile=$OPTFILE"
379 fi
380 if test $OptLev = 1 ; then
381 command="$command -ieee"
382 fi
383 if test $OptLev = 0 ; then
384 command="$command -devel"
385 fi
386 if test "x$GSL" = xt ; then
387 command="$command -gsl"
388 fi
389 if test "x$MPI" != x0 ; then
390 command="$command -mpi"
391 fi
392 if test "x$MULTI_THREAD" = xt ; then
393 #- run multi-threaded using OpenMP:
394 command="$command -omp"
395 fi
396 if test "x$USE_R4" = xt ; then
397 command="$command -use_r4"
398 fi
399 if test "x$EXTRFLG" != x ; then
400 command="$command -extra_flag $EXTRFLG"
401 fi
402 if test "x$TS" = xt ; then
403 command="$command -ts"
404 fi
405 if test "x$PAPIS" = xt ; then
406 command="$command -papis"
407 else
408 if test "x$PCLS" = xt ; then
409 command="$command -pcls"
410 fi
411 fi
412 printf 'genmake ... '
413 eval $command > genmake.tr_log 2>&1
414 RETVAL=$?
415 # Reduce the size of the testing emails!
416 head -100 Makefile > $CDIR/Makefile_head
417 if test "x$RETVAL" != x0 ; then
418 tail genmake.tr_log
419 echo "genmakemodel: genmake failed"
420 cp genmake.log genmake_* genmake.tr_log $CDIR
421 return 1
422 else
423 echo "successful"
424 fi
425 )
426 fi
427 }
428
429 makeclean()
430 {
431 # makeclean directory
432 if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
433 if test "x$NOCLEAN" = xt ; then
434 echo "make Clean skipped!"
435 else
436 (
437 cd $1;
438 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
439 if test -r Makefile ; then
440 printf 'clean build-dir: make Clean ... '
441 $MAKE Clean >> make.tr_log 2>&1
442 RETVAL=$?
443 if test "x$RETVAL" != x0 ; then
444 tail make.tr_log
445 echo "makeclean: \"make Clean\" failed"
446 cp make.tr_log genmake.log genmake.tr_log $CDIR
447 return 1
448 fi
449 echo successful
450 else
451 echo ''
452 fi
453 exit 0
454 )
455 fi
456 }
457
458 run_clean()
459 {
460 # run_clean directory
461 if test "x$NOCLEAN" = xt ; then
462 echo "run_clean skipped!"
463 else
464 (
465 cd $1;
466 printf 'clean run-dir ... '
467 # part of what is done after "make clean" when doing "make CLEAN"
468 find . -name "*.meta" -exec rm {} \;
469 find . -name "*.data" -exec rm {} \;
470 find . -name "fort.*" -exec rm {} \;
471 find . -type l -exec rm {} \;
472 #- should remove executable only if sym-link (already done above)
473 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
474 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
475 rm -f *_MIT_CE_000.opt0000 costfunction*0000
476 rm -f oad_cp.[0-9][0-9][0-9].?????
477 rm -rf mnc_test_*
478 echo successful
479 exit 0
480 )
481 fi
482 }
483
484 makedependmodel()
485 {
486 # makedependmodel directory
487 if test "x$NODEPEND" = xt ; then
488 echo "make depend skipped!"
489 else
490 (
491 cd $1;
492 printf 'make depend ... '
493 $MAKE depend >> make.tr_log 2>&1
494 RETVAL=$?
495 if test "x$RETVAL" != x0 ; then
496 tail make.tr_log
497 echo "makedependmodel: make depend failed"
498 cp make.tr_log genmake.log genmake.tr_log $CDIR
499 return 1
500 else
501 echo successful
502 fi
503 )
504 fi
505 }
506
507 makemodel()
508 {
509 # makemodel directory
510 (
511 mk_fail=0
512 if test "x$NOMAKE" = xt ; then
513 cd $1;
514 if test -x $EXECUTABLE ; then
515 echo "make skipped!"
516 else
517 echo "no executable!"
518 mk_fail=3
519 fi
520 else
521 cd $1;
522 if test -r Makefile ; then
523 printf 'make ... '
524 if test "x$REPLMAKE" = x ; then
525 $MAKE $TARG >> make.tr_log 2>&1
526 else
527 $REPLMAKE $TARG >> make.tr_log 2>&1
528 fi
529 RETVAL=$?
530 if test "x$RETVAL" != x0 ; then
531 tail make.tr_log
532 echo failed
533 cp genmake.log genmake.tr_log $CDIR
534 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
535 rm -f $EXECUTABLE
536 mk_fail=1
537 else
538 echo successful
539 fi
540 else
541 echo "no Makefile !"
542 mk_fail=2
543 fi
544 fi
545 if test $KIND = 1 -a -f taf_ftl.log ; then
546 head -1 taf_ftl.log >> $CDIR"/summary.txt"
547 fi
548 if test $KIND = 2 -a -f taf_ad.log ; then
549 head -1 taf_ad.log >> $CDIR"/summary.txt"
550 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
551 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
552 if test -f taf_output ; then
553 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
554 n3er=`grep -c '\*ERROR\* ' taf_output`
555 nerr=`expr $nerr + $n2er + $n3er`
556 fi
557 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
558 >> $CDIR"/summary.txt"
559 fi
560 if test $mk_fail != 0 ; then return $mk_fail ; fi
561 )
562 }
563
564 mk_mpi_size()
565 {
566 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
567 #
568 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
569 # for an MPI build with no more than proc_Nb processors ;
570 # ensure that enough tiles per proc (nSx,nSy) remain for the given
571 # number of threads (nTx,nTy) ;
572 # return the effective number of processors.
573
574 inp=$1
575 out=$2
576 np=$3
577 tx=$4
578 ty=$5
579 tmp=TTT.$$
580
581 # dirX : select with direction to favor in MPI process repartition
582 # dirX=1 : prefer to put more proc in X direction
583 # dirX=0 : prefer to put more proc in Y direction
584 dirX=0
585
586 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
587 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
588 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
589 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
590
591 #- for each direction, assume # of threads is a multiple of total number of tiles
592 nx=$px
593 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
594 nx=`expr $sx \* $px / $tx`
595 if [ $verbose -gt 1 ]; then
596 echo " change px from $px to $nx to accommodate $tx threads"
597 fi
598 fi
599 ny=$py
600 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
601 ny=`expr $sy \* $py / $ty`
602 if [ $verbose -gt 1 ]; then
603 echo " change py from $py to $ny to accommodate $ty threads"
604 fi
605 fi
606 #- find the largest divisor of input_file proc Nb, but not larger than $np
607 pp=0
608 i=1
609 while [ $i -le $nx ] ; do
610 if [ `expr $nx % $i` -eq 0 ] ; then
611 j=1
612 while [ $j -le $ny ] ; do
613 if [ `expr $ny % $j` -eq 0 ] ; then
614 ij=`expr $i \* $j`
615 if [ $ij -gt $pp ] ; then
616 flag=1
617 elif [ $ij -eq $pp ] ; then
618 flag=$dirX
619 else
620 flag=0
621 fi
622 if test $flag = 1 ; then
623 if [ $ij -le $np ] ; then
624 ix=$i ; jy=$j ; pp=$ij
625 #echo " ix,jy= $ix,$jy"
626 fi
627 fi
628 fi
629 j=`expr $j + 1`
630 done
631 fi
632 i=`expr $i + 1`
633 done
634
635 #- create new SIZE.h type file:
636 sx=`expr $sx \* $px / $ix`
637 sy=`expr $sy \* $py / $jy`
638 if [ $verbose -gt 1 ]; then
639 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
640 fi
641 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
642 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
643 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
644 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
645 rm -f $tmp
646 return $pp
647 }
648
649 symlink_mpifiles()
650 {
651 # Put special links so that MPI specific files are used
652 # This MUST be invoked between makeclean and makelinks because
653 # the Makefile will link to non-mpi files by default
654
655 dir=$1
656 code_dir=$2
657 build_dir=$dir/$3
658
659 # These are files that should replace their counter-part when using -mpi
660 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
661
662 for ii in $MPI_FILES ; do
663 i=`echo $ii | sed 's:^\./::'`
664 name=`echo $i | sed 's:_mpi::'`
665 file="../$code_dir/$i"
666 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
667
668 # Is this an MPI run?
669 if test "x$MPI" = x0 ; then
670 # NO: We undo any _mpi symbolically linked files
671 if test -L $build_dir/$name ; then
672 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
673 RETVAL=$?
674 if test "x$RETVAL" = x0 ; then
675 if [ $verbose -gt 1 ]; then
676 echo " Un-linking $name from ../$code_dir" ; fi
677 rm -f $build_dir/$name
678 fi
679 fi
680 else
681 # YES: We symbolically link these files to the build
682 # dir so long as there is no real file in place
683 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
684 RETVAL=$?
685 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
686 if test "x$RETVAL" != x0 ; then
687 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
688 if test ! -r $build_dir/$name ; then
689 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
690 (cd $build_dir; ln -sf $file $name)
691 fi
692 fi
693 fi
694 done
695 }
696
697 linkdata()
698 {
699 # linkdata run_dir input_dir_1 input_dir_2 ...
700 #
701 # symbolically link data files to run directory
702 if test -d $1 ; then
703 (
704 cd $1 ; shift
705 echo 'linkdata from dirs:' $*
706 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
707 for xx in $inpMPI ; do
708 if test -r "../"$1"/"$xx ; then
709 # found 1 _mpi sfx file in 1rst input dir and it is readable
710 yy=`echo $xx | sed 's:\.mpi$::'`
711 if test "x$MPI" = "x0" ; then
712 # not mpi test: remove symbolic link
713 if test -h $yy ; then rm -f $yy ; fi
714 else
715 # mpi test: remove symbolic link & link .mpi sfx file
716 if test -h $yy ; then rm -f $yy ; fi
717 if test ! -r $yy ; then
718 ln -sf "../"$1"/"$xx $yy ;
719 printf " $xx" 1>&2
720 fi
721 fi
722 fi
723 done
724 if test -r "../"$1"/eedata.mth" ; then
725 # found eedata.mth in 1rst input dir and it is readable
726 if test "x$MULTI_THREAD" = "xt" ; then
727 # multi-threaded test: remove symbolic link & link eedata.mth
728 if test -h eedata ; then rm -f eedata ; fi
729 if test ! -r eedata ; then
730 ln -sf "../"$1"/eedata.mth" eedata ;
731 printf ' eedata.mth' 1>&2
732 fi
733 else
734 # not multi-threaded test: remove eedata symbolic link
735 if test -h eedata ; then rm -f eedata ; fi
736 fi
737 fi
738 prevDir='NONE'
739 for ldir in $* ; do
740 if test -d "../"$ldir -a $ldir != $prevDir ; then
741 printf " ldir=${ldir}:" 1>&2
742 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
743 for i in $files ; do
744 if test ! -d "../"$ldir/$i ; then
745 if test ! -r $i ; then
746 printf ' '$i 1>&2
747 ln -sf "../"$ldir"/"$i $i
748 fi
749 fi
750 done
751 printf ' ;' 1>&2
752 if test -x "../"$ldir"/"prepare_run ; then
753 "../"$ldir"/"prepare_run 1>&2
754 else
755 echo '' 1>&2
756 fi
757 fi
758 prevDir=$ldir
759 done
760 )
761 fi
762 }
763
764 runmodel()
765 {
766 # runmodel directory
767 #
768 # runs $COMMAND in "directory"
769 # (where "$COMMAND" is relative to "directory")
770 (
771 cd $1
772 printf 'runmodel in %s ... ' $1
773 if test "x$MPI" != x0 ; then
774 #- adjust the MPI run command with the right number of Procs
775 #echo '' ; echo " COMMAND='$COMMAND'"
776 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
777 if test "x$MPI_MFILE" != x ; then
778 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
779 fi
780 #echo " COMMAND='$COMMAND'"
781 fi
782 if test -L $EXECUTABLE ; then
783 if test -x "../"$builddir"/"$EXECUTABLE ; then
784 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
785 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
786 else rm -f $EXECUTABLE
787 fi
788 fi
789 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
790 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
791 ln -sf "../"$builddir"/"$EXECUTABLE .
792 fi
793 if test ! -x $EXECUTABLE ; then
794 rm -f $RUNLOG ; touch $RUNLOG
795 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
796 echo " no executable:" $EXECUTABLE >> $RUNLOG
797 RETVAL=8
798 ENDVAL=-1
799 else
800 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
801 # output do not exist or is older than executable:
802 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
803 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
804 #- Divided Adjoint Run:
805 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
806 if test $KIND = 2 -a -f run_ADM_DIVA ; then
807 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
808 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
809 eval "let $adm_diva_nb"
810 if [ $add_DIVA_runs -ge 1 ] ; then
811 rm -f costf* divided.ctrl snapshot*
812 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
813 for ii in `seq 1 $add_DIVA_runs` ; do
814 ( eval $COMMAND ) >> $RUNLOG 2>&1
815 echo " additional DIVA run # $ii : done" >> $RUNLOG
816 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
817 done
818 fi
819 fi
820 #- special DIVA processing ends here
821 ( eval $COMMAND ) >> $RUNLOG 2>&1
822 RETVAL=$?
823 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
824 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
825 find . -name "*.meta" -exec rm {} \;
826 find . -name "*.data" -exec rm {} \;
827 rm -rf mnc_test_*
828 fi
829 else
830 RETVAL=0
831 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
832 touch $RUNLOG
833 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
834 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
835 fi
836 fi
837 rm -f run.log_tmp
838 #- in all cases where OutputFile exists, report SIZE and time
839 if test -f $OUTPUTFILE ; then
840 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
841 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
842 grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
843 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
844 fi
845 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
846 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
847 echo successful
848 printf '=> output from running in %s :\n' $1 1>&2
849 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
850 return 0
851 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
852 #-- for some weird cases (run is finihed but with error code)
853 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
854 printf '=> output from running in %s :\n' $1 1>&2
855 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
856 return 0
857 else
858 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
859 printf '=> output from running in %s :\n' $1 1>&2
860 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
861 cp $RUNLOG $CDIR"/"$RUNLOG
862 return 1
863 fi
864 )
865 }
866
867 createcodelet()
868 {
869 # create codelet for comparing model output
870
871 printf "creating the comparison code (using CC=$CC)... "
872 cat > tr_cmpnum.c <<EOF
873 #include <stdio.h>
874 #include <math.h>
875 int main( int argc, char** argv ) {
876 int linnum,cmplin,best,lncnt;
877 double a,b,abave,relerr;
878 best = -22;
879 lncnt = 0;
880 while( 1 & ( (lncnt+=1) < 999 ) ) {
881 scanf("%d", &linnum);
882 if (linnum == -1) break;
883 scanf("%lf", &a); scanf("%lf", &b);
884 abave = 0.5*(fabs(a)+fabs(b));
885 if ( abave == abave ) {
886 if (abave > 0.0) {
887 relerr=fabs(a-b)/abave;
888 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
889 else { cmplin = -16 ; }
890 best = (best > cmplin) ? best : cmplin; }
891 else { cmplin = -22 ; }
892 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
893 }
894 else {
895 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
896 break; }
897 }
898 if (lncnt == 999) best=-29;
899 if (linnum != -1) best=-99;
900 printf("%d\n", -best);
901 return 0;
902 }
903 EOF
904 $CC -o tr_cmpnum tr_cmpnum.c -lm
905
906 if [ -x ./tr_cmpnum ]; then
907 echo "OK"
908 return 0
909 else
910 echo
911 echo "ERROR: failed to compile comparison code -- please specify"
912 echo " a C compiler using the CC environment variable."
913 exit 1
914 fi
915 }
916
917 formatresults()
918 {
919 # formatresults expt genmake depend make run results*
920
921 nm=$1
922 printf '%s %s %s %s' $2 $3 $4 $5
923 shift; shift; shift; shift; shift;
924 listPrt=$@
925 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
926 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
927 printf '%3s' $listPrt
928 # line below does not work on hp-ux_ia64 : do those substitutions later on
929 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
930
931 if [ $xx = '..' ]; then
932 printf ' N/O '
933 elif [ $xx = '--' ]; then
934 printf ' N/O '
935 elif [ $xx = 99 ]; then
936 printf ' N/O '
937 else
938 if [ $xx -ge $MATCH_CRIT ]; then
939 printf ' pass'
940 else
941 printf ' FAIL'
942 fi
943 fi
944 printf ' %s' $nm
945 if test $KIND = 2 ; then
946 #-- apppend taf repport summary:
947 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
948 if test $tafrep = 1 ; then
949 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
950 fi
951 fi
952 printf '\n'
953
954 }
955
956 scandirs()
957 {
958 if [ $# -eq 1 ]; then
959 for arg in * ; do
960 #test -f $arg/$1 && echo $arg
961 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
962 done
963 else
964 echo $*
965 fi
966 }
967
968
969 check_eedata()
970 {
971 # check_eedata eedata size.h
972 if [ $# -eq 2 ] ; then
973 if test -f $1 -a -f $2 ; then
974 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
975 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
976 if test "x$nx" = x ; then
977 rx=10
978 else
979 rx=`expr $sx % $nx`
980 fi
981 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
982 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
983 if test "x$ny" = x ; then
984 ry=20
985 else
986 ry=`expr $sy % $ny`
987 fi
988 echo `expr $rx + $ry`
989 else
990 echo '-1'
991 fi
992 elif [ $# -eq 1 ] ; then
993 if test -f $1 ; then
994 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
995 if test "x$nx" = x ; then nx=1 ; fi
996 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
997 if test "x$ny" = x ; then ny=1 ; fi
998 #echo $nx $ny
999 echo $nx
1000 else
1001 echo '-1'
1002 fi
1003 else
1004 echo '-2'
1005 fi
1006
1007 }
1008
1009 ###############################################################################
1010
1011
1012 # Default properties
1013 debug=0
1014 verbose=1
1015 NBLINES_MKLOG=16000
1016
1017 OptLev=1
1018 GSL=f
1019
1020 CLEANUP=f
1021 NORUN=f
1022 QUICK=f
1023 NOMAKE=f
1024 NOGENMAKE=f
1025 NOCLEAN=f
1026 NODEPEND=f
1027 POSTCLEAN=0
1028
1029 BASH=
1030 OPTFILE=NONE
1031 ADDRESSES=
1032 TESTDIRS=
1033 SKIPDIRS=
1034 MPACKDIR="../tools/mpack-1.6"
1035 HAVE_MPACK=
1036 MPACK=
1037 SENDCMD=
1038 SAVDIR='.'
1039 COMMAND=
1040 MKDEPEND=
1041 if test "x$MAKE" = x ; then
1042 MAKE=make
1043 fi
1044 REPLMAKE=
1045 if test "x$CC" = x ; then
1046 CC=cc
1047 fi
1048 JOBS=
1049 TARG=
1050 MPI=0
1051 MPI_MFILE=
1052 MULTI_THREAD=f
1053 OUTDIR=
1054 DELDIR=
1055 USE_R4=
1056 EXTRFLG=
1057
1058 #- type of testing (KIND):
1059 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1060 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1061 KIND=0
1062
1063 # list of pTracers to check for monitor output
1064 PTRACERS_NUM="1 2 3 4 5"
1065
1066 MATCH_CRIT=10
1067
1068 printf "parsing options... "
1069
1070 ac_prev=
1071 for ac_option ; do
1072
1073 # If the previous option needs an argument, assign it.
1074 if test -n "$ac_prev"; then
1075 eval "$ac_prev=\$ac_option"
1076 ac_prev=
1077 continue
1078 fi
1079
1080 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1081
1082 case $ac_option in
1083
1084 -help | --help | -h | --h) usage ;;
1085
1086 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1087 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1088
1089 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1090 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1091 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1092 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1093
1094 -send | --send ) ac_prev=SENDCMD ;;
1095 -send=* | --send=* ) SENDCMD=$ac_optarg ;;
1096 -savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
1097 -savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
1098
1099 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1100 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1101 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1102 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1103
1104 -bash | --bash | -b | --b) ac_prev=BASH ;;
1105 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1106
1107 -command | --command | -c | --c) ac_prev=COMMAND ;;
1108 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1109
1110 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1111 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1112
1113 -make | --make | -m | --m) ac_prev=MAKE ;;
1114 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1115
1116 -repl_mk | --repl_mk ) ac_prev=REPLMAKE ;;
1117 -repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;;
1118
1119 -odir | --odir) ac_prev=OUTDIR ;;
1120 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1121
1122 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1123 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1124
1125 -match | --match ) ac_prev=MATCH_CRIT ;;
1126 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1127
1128 -j | --j) ac_prev=JOBS ;;
1129 -j=* | --j=*) JOBS=$ac_optarg ;;
1130
1131 -ef | --ef) ac_prev=EXTRFLG ;;
1132 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1133
1134 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1135
1136 -norun | --norun | -nr | --nr) NORUN=t ;;
1137 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1138 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1139 -quick | --quick | -q | --q) QUICK=t ;;
1140 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1141 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1142 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1143
1144 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1145 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1146
1147 -mpi | --mpi) MPI=2 ;;
1148 -MPI | --MPI) ac_prev=MPI ;;
1149 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1150
1151 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1152 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1153
1154 -mth) MULTI_THREAD=t ;;
1155
1156 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1157 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1158 fi ;;
1159 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1160 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1161 fi ;;
1162 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1163 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1164 fi ;;
1165
1166 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1167 printf " ... " ;;
1168 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1169 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1170 -fast) OptLev=`expr $OptLev \* 2` ;;
1171 -devel) OptLev=0 ;;
1172 -gsl) GSL=t ;;
1173
1174 -verbose) verbose=2 ;;
1175 -debug) debug=1 ;;
1176 -quiet) verbose=0 ;;
1177
1178 -deldir | -dd) DELDIR=t ;;
1179
1180 -use_r4|-ur4) USE_R4=t ;;
1181
1182 -ts) TS=t;;
1183 -papis) PAPIS=t;;
1184 -pcls) PCL=t;;
1185
1186 -*) echo "Error: unrecognized option: "$ac_option
1187 usage ;;
1188 *) echo "Error: unrecognized argument: "$ac_option
1189 usage ;;
1190
1191 esac
1192
1193 done
1194
1195 if test "x$QUICK" = xt ; then
1196 NOGENMAKE=t
1197 NOCLEAN=t
1198 NODEPEND=t
1199 fi
1200
1201 #- check length of MPI machine file:
1202 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1203 if test -r $MPI_MFILE ; then
1204 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1205 if [ $nl -lt $MPI ] ; then
1206 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1207 usage
1208 fi
1209 if [ $verbose -gt 1 ]; then
1210 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1211 fi
1212 else
1213 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1214 usage
1215 fi
1216 fi
1217
1218 #- setting for forward or ADM testing
1219 if test $KIND = 1 ; then
1220 TARG=ftlall
1221 code_dir=code_ad
1222 inputdir=input_ad
1223 ref_outp="output_tlm.txt"
1224 EXECUTABLE="mitgcmuv_ftl"
1225 elif test $KIND = 2 ; then
1226 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1227 code_dir=code_ad
1228 inputdir=input_ad
1229 ref_outp="output_adm.txt"
1230 EXECUTABLE="mitgcmuv_ad"
1231 elif test $KIND = 4 ; then
1232 TARG=adAll
1233 code_dir=code_oad
1234 inputdir=input_oad
1235 ref_outp="output_oadm.txt"
1236 EXECUTABLE="mitgcmuv_ad"
1237 else
1238 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1239 code_dir=code
1240 inputdir=input
1241 ref_outp="output.txt"
1242 EXECUTABLE="mitgcmuv"
1243 fi
1244
1245 xx=`echo $TESTDIRS | awk '{print $1}'`
1246 if test "x$TESTDIRS" = x ; then
1247 LIST=`scandirs results/$ref_outp`
1248 elif test $xx = 'start_from' ; then
1249 xx=`echo $TESTDIRS | awk '{print $2}'`
1250 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1251 else
1252 #- expand group of experiments:
1253 LIST=" "
1254 for xx in $TESTDIRS
1255 do
1256 case $xx in
1257 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1258 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1259 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1260 ;;
1261 'tutorials')
1262 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1263 *) LIST=${LIST}" "$xx ;;
1264 esac
1265 done
1266 fi
1267 #echo 'LIST='${LIST}'<'
1268 #- skip dirs, remove duplicate and non-directory:
1269 TESTDIRS=" "
1270 count=0
1271 for xx in $LIST
1272 do
1273 yy=`echo $SKIPDIRS | grep -c $xx`
1274 if test $yy = 0 ; then
1275 if test -d $xx ; then
1276 yy=`echo $TESTDIRS | grep -c $xx`
1277 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1278 else count=1 ;
1279 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1280 fi
1281 else
1282 if test $count = 1 ; then echo -n ", \"$xx\""
1283 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1284 fi
1285 fi
1286 done
1287 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1288 #echo 'TESTDIRS='${TESTDIRS}'<'
1289
1290 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1291 OPTFILE=$MITGCM_OF
1292 fi
1293
1294 LOC_MFILE='tr_mpi_mfile'
1295 RUNLOG="run.tr_log"
1296 OUTPUTFILE=$ref_outp
1297 if test "x$COMMAND" = x ; then
1298 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1299 fi
1300 if test "x$MPI" != x0 ; then
1301 OUTPUTFILE="STDOUT.0000"
1302 fi
1303
1304 echo "OK (COMMAND= $COMMAND )"
1305
1306 TMP=./tr_$$
1307 #- try to put temporary files in system-local /tmp dir
1308 #TMP=/tmp/tr_$$
1309 #touch $TMP ; retVal=$?
1310 #if [ $retVal -eq 0 ] ; then
1311 # if test ! -r $TMP ; then TMP=./tr_$$ ; fi
1312 #else
1313 # TMP=./tr_$$
1314 #fi
1315 #rm -f $TMP
1316 #if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
1317
1318 # set the Default List of output variables to be checked:
1319 # (use default or load experiment-specific list from file "tr_checklist")
1320 # content : 1rst = main variable used to decide if it pass or FAIL
1321 # others = number of matching digits to be printed in summary.txt
1322 if test $KIND = 1 ; then
1323 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1324 EMPTY_RESULTS='.. .. ..'
1325 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1326 elif test $KIND = 2 -o $KIND = 4 ; then
1327 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1328 EMPTY_RESULTS='.. .. ..'
1329 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1330 else
1331 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1332 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1333 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1334 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1335 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1336 fi
1337
1338 # create the FORTRAN comparison code
1339 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1340 echo "skipping comparison code build"
1341 else
1342 createcodelet
1343 fi
1344
1345 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1346 if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
1347 echo "skipping mpack build"
1348 else
1349 build_mpack
1350 if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
1351 fi
1352
1353 # Create a uniquely named directory to store results
1354 CMDLINE=$0
1355 for xx in "$@" ; do nw=`echo $xx | wc -w`
1356 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1357 nb=`echo $xx | grep -c '='`
1358 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1359 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1360 CMDLINE="$CMDLINE $yy" ; fi
1361 fi
1362 done
1363 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1364 MACH=`hostname`
1365 UNAMEA=`uname -a`
1366 DATE=`date +%Y%m%d`
1367 BASE="tr_"$MACH"_"$DATE"_"
1368 if test "x$OUTDIR" != x ; then
1369 BASE="tr_"$OUTDIR"_"$DATE"_"
1370 else
1371 short_name=`hostname | sed 's/\..*$//'`
1372 BASE="tr_"$short_name"_"$DATE"_"
1373 fi
1374 DNUM=0
1375 DRESULTS="$BASE$DNUM"
1376 while test -e $DRESULTS ; do
1377 DNUM=$(( $DNUM + 1 ))
1378 DRESULTS="$BASE$DNUM"
1379 done
1380 mkdir $DRESULTS
1381 RETVAL=$?
1382 if test "x$RETVAL" != x0 ; then
1383 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1384 exit 1
1385 fi
1386 SUMMARY="$DRESULTS/summary.txt"
1387 start_date=`date`
1388 echo $start_date > $SUMMARY
1389 echo 'run:' $CMDLINE >> $SUMMARY
1390 echo 'on :' $UNAMEA >> $SUMMARY
1391
1392 of_path=
1393 if test "x$OPTFILE" != xNONE ; then
1394 if test -r $OPTFILE ; then
1395 # get the path
1396 path=${OPTFILE%/*}
1397 if test "x$path" = x ; then
1398 of_path=`pwd`
1399 else
1400 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1401 fi
1402 file=${OPTFILE##*/}
1403 OPTFILE=$of_path/$file
1404 cp $OPTFILE $DRESULTS
1405 echo >> $SUMMARY
1406 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1407 else
1408 echo | tee -a $SUMMARY
1409 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1410 exit 1
1411 fi
1412 else
1413 echo >> $SUMMARY
1414 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1415 #-note: to be filled later after 1rst run
1416 fi
1417 echo
1418 echo >> $SUMMARY
1419 if test $KIND = 0 ; then
1420 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1421 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1422 line_1="G D M c m s m s m s m s"
1423 line_2="e p a R g m m e . m m e . m m e . m m e ."
1424 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1425 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1426 for ii in $PTRACERS_NUM ; do
1427 line_0="$line_0 --PTR 0"$ii"--"
1428 line_1="$line_1 m s"
1429 line_2="$line_2 m m e ."
1430 line_3="$line_3 i a a d"
1431 line_4="$line_4 n x n ."
1432 done
1433 else
1434 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1435 if test $KIND = 1 ; then
1436 #echo "TANGLIN=true" >> $SUMMARY
1437 echo "TangLin generated by TAF" >> $SUMMARY
1438 elif test $KIND = 3 ; then
1439 echo "TangLin generated by OpenAD" >> $SUMMARY
1440 elif test $KIND = 2 ; then
1441 #echo "ADJOINT=true" >> $SUMMARY
1442 echo "Adjoint generated by TAF" >> $SUMMARY
1443 else
1444 echo "Adjoint generated by OpenAD" >> $SUMMARY
1445 fi
1446 if test $KIND = 1 -o $KIND = 3 ; then
1447 line_1="G D M C T F"
1448 line_2="e p a R o L D"
1449 else
1450 line_1="G D M C A F"
1451 line_2="e p a R o d D"
1452 fi
1453 line_3="n n k u s G G"
1454 line_4="2 d e n t r r"
1455 echo >> $SUMMARY
1456 fi
1457 if test "x$CLEANUP" != xt ; then
1458 echo "$line_0" | tee -a $SUMMARY
1459 echo "$line_1" | tee -a $SUMMARY
1460 echo "$line_2" | tee -a $SUMMARY
1461 echo "$line_3" | tee -a $SUMMARY
1462 echo "$line_4" | tee -a $SUMMARY
1463 echo "" | tee -a $SUMMARY
1464 fi
1465 echo "-------------------------------------------------------------------------------"
1466
1467 # ...and each test directory...
1468 for dir in $TESTDIRS ; do
1469
1470 # set builddir & rundir:
1471 builddir="build"
1472 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1473 rundir="run"
1474 pfxdir="tr_$rundir"
1475 if test ! -d $dir/$rundir ; then
1476 rundir=$builddir
1477 fi
1478 CODE_DIR=$dir/$code_dir
1479 BUILD_DIR=$dir/$builddir
1480
1481 # Cleanup only!
1482 if test "x$CLEANUP" = xt ; then
1483 echo -n ' --- dir:' $BUILD_DIR ': '
1484 makeclean $BUILD_DIR
1485 ( cd $BUILD_DIR
1486 rm -f $EXECUTABLE *.bak
1487 rm -f genmake_state genmake_*optfile genmake.log
1488 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1489 rm -rf mpi_headers
1490 )
1491 if test -d $dir/$rundir/CVS ; then
1492 echo -n ' --- dir:' $dir/$rundir ': '
1493 run_clean $dir/$rundir
1494 fi
1495 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1496 ttd=`echo $trdir | wc -w`
1497 if test $ttd != 0 ; then
1498 echo ' --- rm dir:' $trdir
1499 ( cd $dir ; rm -rf $trdir )
1500 fi
1501 continue
1502 fi
1503
1504 # Verify that the testdir exists and contains previous
1505 # results in the correct location--or skip this directory!
1506 fout=$dir"/results/"$ref_outp
1507 #if test ! -r $fout ; then
1508 if test ! -r $fout -a ! -r ${fout}.gz ; then
1509 echo "can't read \"$fout\" -- skipping $dir"
1510 continue
1511 fi
1512
1513 # Check for specific files for particular type of run
1514
1515 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1516 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1517 continue
1518 fi
1519 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1520 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1521 continue
1522 fi
1523
1524 if test "x$MPI" != "x0" ; then
1525 ntx=1 ; nty=1
1526 if test "x$MULTI_THREAD" = "xt" ; then
1527 ff=$dir"/input/eedata.mth"
1528 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1529 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1530 if test "x$ntx" = x ; then ntx=1 ; fi
1531 if test "x$nty" = x ; then nty=1 ; fi
1532 fi
1533 #- create new SIZE.h with no more than '$MPI' Procs
1534 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1535 LOC_NPROC=$?
1536 ( cd $BUILD_DIR
1537 if test -r SIZE.h.mpi ; then
1538 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1539 else RETVAL=1
1540 fi
1541 if test "x$RETVAL" = x0 ; then
1542 rm -f tr_size.mpi
1543 else
1544 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1545 fi
1546 )
1547 if test "x$MPI_MFILE" != x ; then
1548 #- create new MPI machine-file with the right number of Procs
1549 rm -f $LOC_MFILE
1550 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1551 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1552 if [ $nl -lt $LOC_NPROC ] ; then
1553 rm -f $LOC_MFILE
1554 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1555 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1556 fi
1557 if [ $verbose -gt 1 ]; then
1558 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1559 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1560 fi
1561 fi
1562 if test "x$MULTI_THREAD" = "xt" ; then
1563 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1564 if test $retv != 0 ; then
1565 echo "input/eedata.mth tiling misfit -- skipping $dir"
1566 continue
1567 fi
1568 fi
1569 fi
1570
1571 # Check whether there are "extra runs" for this testdir
1572 extra_runs=
1573 if test "x$NORUN" = xf ; then
1574 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1575 fi
1576 #echo "ex_run_dirs='$ex_run_dirs'"
1577 for exd in $ex_run_dirs ; do
1578 name=`echo $exd | sed -e "s/$inputdir\.//"`
1579 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1580 outf="$dir/results/$refExOut"
1581 if test -r $outf -o -r ${outf}.gz ; then
1582 if test "x$MULTI_THREAD" = "xt" ; then
1583 if test -r $dir"/"$exd"/eedata.mth" ; then
1584 if test "x$MPI" = "x0" ; then
1585 extra_runs="$extra_runs $name"
1586 else
1587 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1588 if test $retv = 0 ; then
1589 extra_runs="$extra_runs $name"
1590 else
1591 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1592 fi
1593 fi
1594 #else echo $dir"/"$exd"/eedata.mth: not found"
1595 fi
1596 else
1597 extra_runs="$extra_runs $name"
1598 fi
1599 fi
1600 done
1601
1602 echo
1603 if test "x$extra_runs" = "x" ; then
1604 echo "Experiment: $dir"
1605 else
1606 echo "Experiment: $dir ; extra_runs=$extra_runs"
1607 fi
1608 echo
1609 unset genmake makedepend make run
1610 results=$EMPTY_RESULTS
1611
1612 # Create an output dir & summary.txt file for each tested experiment (tdir)
1613 locDIR=$DRESULTS"/"$dir
1614 mkdir $locDIR
1615 #- report to this experiment local summary file ---
1616 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1617 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1618 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1619 CDIR=`pwd`"/$locDIR"
1620
1621 if test "x$NORUN" = xt ; then
1622 run=N
1623 genmakemodel $dir/$builddir && genmake=Y \
1624 && makeclean $dir/$builddir \
1625 && symlink_mpifiles $dir $code_dir $builddir \
1626 && makedependmodel $dir/$builddir && makedepend=Y \
1627 && makemodel $dir/$builddir && make=Y
1628 else
1629 genmakemodel $dir/$builddir && genmake=Y \
1630 && makeclean $dir/$builddir \
1631 && symlink_mpifiles $dir $code_dir $builddir \
1632 && makedependmodel $dir/$builddir && makedepend=Y \
1633 && makemodel $dir/$builddir && make=Y \
1634 && run_clean $dir/$rundir \
1635 && linkdata $dir/$rundir $inputdir \
1636 && runmodel $dir/$rundir && run=Y \
1637 && results=`testoutput_run $dir $rundir $ref_outp`
1638 fi
1639 #echo "results='$results'"
1640
1641 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1642 echo 1>&2
1643 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1644 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1645
1646 for ex in $extra_runs ; do
1647 unset run
1648 results=$EMPTY_RESULTS
1649 # reference output file
1650 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1651 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1652 locDIR=$DRESULTS"/"$dir"."$ex
1653 mkdir $locDIR
1654 #- report to this experiment local summary file ---
1655 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1656 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1657 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1658 CDIR=`pwd`"/$locDIR"
1659 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1660 run_clean $dir/$pfxdir.$ex
1661 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1662 runmodel $dir/$pfxdir.$ex && run=Y \
1663 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1664 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1665 echo 1>&2
1666 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1667 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1668 if test "x$POSTCLEAN" = x2 ; then
1669 run_clean $dir/$pfxdir.$ex
1670 fi
1671 done
1672
1673 if test ! -f $DRESULTS"/"genmake_state ; then
1674 if test -f $dir/$builddir/Makefile ; then
1675 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1676 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1677 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1678 echo " $mkOpt" >> $DRESULTS/genmake_state
1679 if test "x$OPTFILE" = xNONE ; then
1680 eval $mkOpt
1681 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1682 $SUMMARY > tmp.tr_log
1683 RETVAL=$?
1684 if test "x$RETVAL" = x0 ; then
1685 cp -f tmp.tr_log $SUMMARY
1686 fi
1687 rm -f tmp.tr_log
1688 fi
1689 gmkLog=$dir/$builddir/genmake.log
1690 if test -r $gmkLog ; then
1691 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1692 RETVAL=$?
1693 if test "x$RETVAL" = x0 ; then
1694 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1695 echo "extract compiler version:" >> $DRESULTS/genmake_state
1696 sed -n '/Get compiler version/,/<-- compiler version/p' \
1697 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1698 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1699 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1700 >> $DRESULTS/genmake_state
1701 rm -f tmp.tr_log
1702 fi
1703 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1704 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1705 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1706 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1707 fi
1708 fi
1709 fi
1710 #postclean $dir/$builddir
1711 if test "x$POSTCLEAN" = x2 ; then
1712 makeclean $dir/$builddir \
1713 && run_clean $dir/$rundir
1714 fi
1715 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1716
1717 echo "-------------------------------------------------------------------------------"
1718
1719 done
1720
1721 printf "Start time: " >> $SUMMARY
1722 echo "$start_date" >> $SUMMARY
1723 printf "End time: " >> $SUMMARY
1724 date >> $SUMMARY
1725
1726 # If addresses were supplied and mpack built successfully, then try
1727 # to send email using mpack.
1728 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1729 echo "No results email was sent."
1730 else
1731 if test "x$SENDCMD" != x ; then
1732 if [ $verbose -gt 1 ]; then
1733 echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
1734 fi
1735 tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
1736 && gzip ${SAVDIR}/${DRESULTS}".tar" \
1737 && $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
1738 RETVAL=$?
1739 if test "x$RETVAL" != x0 ; then
1740 echo
1741 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1742 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1743 echo " summary of results from the directory \"$DRESULTS\"."
1744 echo
1745 else
1746 echo
1747 echo "An email containing results was sent to the following addresses:"
1748 echo " \"$ADDRESSES\""
1749 echo
1750 test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
1751 test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
1752 fi
1753 fi
1754 fi
1755
1756 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1757 rm -f tr_cmpnum.c tr_cmpnum
1758 fi
1759
1760 if test "x$CLEANUP" != xt ; then
1761 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1762 if test -e tr_out.txt ; then
1763 mv tr_out.txt tr_out.txt.old
1764 fi
1765 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1766 fi
1767
1768 if test "x$DELDIR" = xt ; then
1769 rm -rf $DRESULTS
1770 fi
1771 echo "======== End of testreport execution ========"

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