/[MITgcm]/MITgcm/verification/testreport
ViewVC logotype

Contents of /MITgcm/verification/testreport

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph


Revision 1.190 - (show annotations) (download)
Mon Jul 22 19:16:55 2013 UTC (10 years, 8 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint64k
Changes since 1.189: +19 -17 lines
update list of files to remove (run_clean and testreport -clean option)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.189 2013/07/20 20:32:17 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
19 echo " DEF=off => use IEEE numerics option (if available)"
20 echo " (-devel) use optfile developement flags (if available)"
21 echo " (-gsl) compile with \"-gsl\" flag"
22 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
23 echo " (-optfile|-of) STRING list of optfiles to use"
24 echo " (-addr|-a) STRING list of email recipients"
25 echo " (DEF=\"\" no email is sent)"
26 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
27 echo " (DEF=\"../tools/mpack-1.6\")"
28 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
29 echo " (recognized groups: basic, tutorials)"
30 echo " (DEF=\"\" which test all)"
31 echo " (if list= 'start_from THIS_EXP' then"
32 echo " test THIS_EXP + all the following)"
33 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
34 echo " (DEF=\"\" which test all)"
35 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
36 echo " Bourne-compatible \"sh\" shell"
37 echo " (DEF=\"\" for \"bash\")"
38 echo " (-tlm) perform a Tangent Linear run"
39 echo " (-adm|-ad) perform an adjoint run"
40 echo " (-oad) perform an OpenAD adjoint run"
41 echo " (-command|-c) STRING command to run"
42 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
43 echo " (-make|-m) STRING command to use for \"make\""
44 echo " (DEF=\"make\")"
45 echo " (-odir) STRING used to build output directory name"
46 echo " (DEF=\"hostname\")"
47 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
48 # echo " (DEF=\"1 2 3 4 5\")"
49 echo " (-match) NUMBER Matching Criteria (number of digits)"
50 echo " (DEF=\"$MATCH_CRIT\")"
51 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
52 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
53 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
54 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
55 echo " (-obj) only produces objects (=norun & no executable)"
56 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
57 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
58 echo " (-nogenmake|-ng) skip the genmake stage"
59 echo " (-noclean|-nc) skip the \"make clean\" stage"
60 echo " (-nodepend|-nd) skip the \"make depend\" stage"
61 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
62 echo " (-deloutp|-do) delete output files after successful run"
63 echo " (-deldir|-dd) on success, delete the output directory"
64 echo " (-ts) provide timing information per timestep"
65 echo " (-papis) provide MFlop/s per timestep using PAPI"
66 echo " (-pcls) provide MFlop/s per timestep using PCL"
67 echo
68 echo "and where STRING can be a whitespace-delimited list"
69 echo "such as:"
70 echo
71 echo " -t 'exp0 exp2 exp3' "
72 echo " -addr='abc@123.com testing@home.org'"
73 echo
74 echo "provided that the expression is properly quoted within the current"
75 echo "shell (note the use of single quotes to protect white space)."
76 echo
77 exit 1
78 }
79
80 # build the mpack utility
81 build_mpack()
82 {
83 printf "building the mpack utility... "
84 MPACK="$MPACKDIR/mpack"
85 if test ! -x $MPACK ; then
86 if test ! -d $MPACKDIR ; then
87 echo
88 echo "Error: can't find \"$MPACKDIR\""
89 echo " are you sure this program is being run in the correct "
90 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
91 echo
92 HAVE_MPACK=f
93 fi
94 if test "x$CC" = x ; then
95 export CC=cc
96 fi
97 printf "building mpack (using CC=$CC)... "
98 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
99 RETVAL=$?
100 if test "x$RETVAL" != x0 ; then
101 echo
102 echo "Error building the mpack tools at: $MPACK_DIR"
103 echo
104 HAVE_MPACK=f
105 else
106 rm -f tr_build_mpack.out
107 HAVE_MPACK=t
108 echo "done"
109 fi
110 else
111 HAVE_MPACK=t
112 echo "already exist"
113 fi
114 }
115
116 testoutput_var()
117 {
118 # testoutput_var dir s1 label subdir reference_output
119 #
120 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
121 # with same output from reference file $dir/$reference_output
122 # using search strings s1 and text label
123
124 if [ $debug -gt 0 ]; then
125 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
126 fi
127 if [ -r $1/$4/$OUTPUTFILE ]; then
128 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
129 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
130 if [ $lncntA -lt 2 ]; then
131 if [ $verbose -gt 0 ]; then
132 echo Not enough lines of output when searching for "$2" 1>&2
133 fi
134 rm -f tmp1.txt ; return 99
135 fi
136 else
137 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
138 return 99
139 fi
140 if [ $debug -gt 0 ]; then
141 echo testoutput_var: grep "$2" $1/$5 1>&2
142 fi
143 grep "$2" $1/$5 | sed 's/.*=//' | cat -n > tmp2.txt
144 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
145 if [ $lncntB -lt 2 ]; then
146 if [ $verbose -gt 0 ]; then
147 echo Not enough lines of output when searching for "$2" 1>&2
148 fi
149 rm -f tmp1.txt tmp2.txt ; return 99
150 fi
151 if [ $lncntA -ne $lncntB ]; then
152 if [ $verbose -gt 0 ]; then
153 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
154 fi
155 rm -f tmp1.txt tmp2.txt ; return 99
156 fi
157 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
158 if [ $has_nan -gt 0 ] ; then
159 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
160 rm -f tmp1.txt tmp2.txt ; return 99
161 fi
162 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
163 if [ $has_inf -gt 0 ] ; then
164 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
165 rm -f tmp1.txt tmp2.txt ; return 99
166 fi
167 if [ $debug -gt 0 ]; then
168 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
169 fi
170 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
171 if [ $debug -gt 0 ]; then
172 echo testoutput_var: compare_lines 1>&2
173 fi
174 if [ $verbose -gt 1 ]; then
175 cat tmp3.txt 1>&2
176 fi
177 echo "-1" >> tmp3.txt
178 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
179 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
180 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
181 if [ $digits_of_similarity -eq 99 ]; then
182 if [ $verbose -gt 0 ]; then
183 echo testoutput_var: No comparison was available for \"$3\" 1>&2
184 fi
185 digits_of_similarity=99
186 else
187 if [ $verbose -gt 0 ]; then
188 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
189 fi
190 fi
191 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
192
193 return $digits_of_similarity
194 }
195
196 testoutput_run()
197 {
198 # testoutput_run directory subdir reference_output
199 #
200 # test output from 1 run in "directory"
201 # --> same processing for adjoint & forward test
202 # default list of output variables to be checked:
203 # 1rst : main variable used to decide if it pass or FAIL
204 # others : number of matching digits to be printed in summary.txt
205 listChk=$DEF_CHECK_LIST
206 # load experiment-specific list from file "tr_checklist" (if it exist)
207 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
208 sVar=`echo $listChk | awk '{print $1}'`
209 # remove 1rst var and expand the list: + => min max mean s.d
210 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
211 | sed 's/+//g' | sed "s/^$sVar//"`
212 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
213 # set ref.outp file-name and, if compressed, uncompress it into subdir
214 refoutp=results/$3
215 if test ! -r $1/results/$3 ; then
216 if test -r $1/results/${3}.gz ; then
217 tmpNam1=$3
218 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
219 if test "x$tmpNam1" = "x$tmpNam2" ; then
220 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
221 fi
222 refoutp=$2/$tmpNam1
223 if [ $debug -gt 0 ]; then
224 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
225 fi
226 gzip -cd $1/results/${3}.gz > $1/$refoutp
227 else
228 echo "missing reference output file '$3' (.gz) in '$1/results/'"
229 fi
230 fi
231 # check for ptracer output in reference_output file :
232 if test $KIND = 0 ; then
233 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
234 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
235 for ii in $PTRACERS_NUM ; do
236 ptrfound=0
237 for jj in $ptr_mon ; do
238 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
239 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
240 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
241 done
242 if test $ptrfound = '1' ; then
243 eval "HAVE_PTR0"$ii"=t"
244 else
245 eval "HAVE_PTR0"$ii"=f"
246 # remove this ptr from the list of output variable to check
247 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
248 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
249 fi
250 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
251 done
252 fi
253 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
254 if test $tst != 1 ; then
255 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
256 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
257 echo "==> WARNING: in checked list:" $listVar 1>&2
258 #- put it back once:
259 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
260 fi
261 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
262 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
263 #---
264 allargs=""
265 for xx in $listVar
266 do
267 case $xx in
268 'PS') if [ $debug -gt 0 ]
269 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
270 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
271 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
272 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
273 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
274 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
275 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
276 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
277 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
278 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
279 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
280 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
281 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
282 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
283 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
284 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
285 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
286 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
287 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
288 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
289 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
290 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
291 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
292 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
293 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
294 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
295 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
296 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
297 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
298 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
299 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
300 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
301 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
302 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
303 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
304 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
305 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
306 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
307 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
308 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
309 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
310 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
311 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
312 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
313 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
314 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
315 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
316 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
317 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
318 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
319 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
320 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
321 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
322 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
323 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
324 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
325 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
326 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
327 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
328 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
329 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
330 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
331 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
332 esac
333 if test $xx = $sVar
334 then allargs="$allargs > $yy <"
335 else allargs="$allargs $yy"
336 fi
337 done
338
339 nbVar=`echo $listVar | awk '{print NF}'`
340 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
341 #-- fill line (up to standard length) with dot:
342 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
343 echo $allargs $adNul
344 else
345 echo $allargs
346 fi
347 # <-- same processing for adjoint & forward test
348 }
349
350 genmakemodel()
351 {
352 # genmakemodel directory
353 if test "x$NOGENMAKE" = xt ; then
354 echo "genmake skipped!"
355 else
356 if test "x$BASH" = x ; then
357 GENMAKE2="../../../tools/genmake2"
358 else
359 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
360 fi
361 (
362 cd $1;
363 command="$GENMAKE2 -ds -m $MAKE"
364 if test "x$MKDEPEND" != x ; then
365 command="$command -makedepend=$MKDEPEND"
366 fi
367 if test $KIND = 1 -o $KIND = 2 ; then
368 command="$command --mods=../code_ad"
369 elif test $KIND = 4 ; then
370 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
371 else
372 command="$command -mods=../code"
373 fi
374 if test "x$OPTFILE" != xNONE ; then
375 command="$command -optfile=$OPTFILE"
376 fi
377 if test $OptLev = 1 ; then
378 command="$command -ieee"
379 fi
380 if test $OptLev = 0 ; then
381 command="$command -devel"
382 fi
383 if test "x$GSL" = xt ; then
384 command="$command -gsl"
385 fi
386 if test "x$MPI" != x0 ; then
387 command="$command -mpi"
388 fi
389 if test "x$MULTI_THREAD" = xt ; then
390 #- run multi-threaded using OpenMP:
391 command="$command -omp"
392 fi
393 if test "x$USE_R4" = xt ; then
394 command="$command -use_r4"
395 fi
396 if test "x$EXTRFLG" != x ; then
397 command="$command -extra_flag $EXTRFLG"
398 fi
399 if test "x$TS" = xt ; then
400 command="$command -ts"
401 fi
402 if test "x$PAPIS" = xt ; then
403 command="$command -papis"
404 else
405 if test "x$PCLS" = xt ; then
406 command="$command -pcls"
407 fi
408 fi
409 printf 'genmake ... '
410 eval $command > genmake.tr_log 2>&1
411 RETVAL=$?
412 # Reduce the size of the testing emails!
413 head -100 Makefile > $CDIR/Makefile_head
414 if test "x$RETVAL" != x0 ; then
415 tail genmake.tr_log
416 echo "genmakemodel: genmake failed"
417 cp genmake.log genmake_* genmake.tr_log $CDIR
418 return 1
419 else
420 echo "successful"
421 fi
422 )
423 fi
424 }
425
426 makeclean()
427 {
428 # makeclean directory
429 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
430 if test "x$NOCLEAN" = xt ; then
431 echo "make Clean skipped!"
432 else
433 (
434 cd $1;
435 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
436 if test -r Makefile ; then
437 printf 'clean build-dir: make Clean ... '
438 $MAKE Clean >> make.tr_log 2>&1
439 RETVAL=$?
440 if test "x$RETVAL" != x0 ; then
441 tail make.tr_log
442 echo "makeclean: \"make Clean\" failed"
443 cp make.tr_log genmake.log genmake.tr_log $CDIR
444 return 1
445 fi
446 echo successful
447 else
448 echo ''
449 fi
450 exit 0
451 )
452 fi
453 }
454
455 run_clean()
456 {
457 # run_clean directory
458 if test "x$NOCLEAN" = xt ; then
459 echo "run_clean skipped!"
460 else
461 (
462 cd $1;
463 printf 'clean run-dir ... '
464 # part of what is done after "make clean" when doing "make CLEAN"
465 find . -name "*.meta" -exec rm {} \;
466 find . -name "*.data" -exec rm {} \;
467 find . -name "fort.*" -exec rm {} \;
468 find . -type l -exec rm {} \;
469 #- should remove executable only if sym-link (already done above)
470 rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
471 rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
472 rm -f *_MIT_CE_000.opt0000 costfunction*0000
473 rm -f oad_cp.000.[0-9][0-9][0-9][0-9][0-9]
474 rm -rf mnc_test_*
475 echo successful
476 exit 0
477 )
478 fi
479 }
480
481 makedependmodel()
482 {
483 # makedependmodel directory
484 if test "x$NODEPEND" = xt ; then
485 echo "make depend skipped!"
486 else
487 (
488 cd $1;
489 printf 'make depend ... '
490 $MAKE depend >> make.tr_log 2>&1
491 RETVAL=$?
492 if test "x$RETVAL" != x0 ; then
493 tail make.tr_log
494 echo "makedependmodel: make depend failed"
495 cp make.tr_log genmake.log genmake.tr_log $CDIR
496 return 1
497 else
498 echo successful
499 fi
500 )
501 fi
502 }
503
504 makemodel()
505 {
506 # makemodel directory
507 (
508 mk_fail=0
509 if test "x$NOMAKE" = xt ; then
510 cd $1;
511 if test -x $EXECUTABLE ; then
512 echo "make skipped!"
513 else
514 echo "no executable!"
515 mk_fail=3
516 fi
517 else
518 cd $1;
519 if test -r Makefile ; then
520 printf 'make ... '
521 if test "x$REPLMAKE" = x ; then
522 $MAKE $TARG >> make.tr_log 2>&1
523 else
524 $REPLMAKE $TARG >> make.tr_log 2>&1
525 fi
526 RETVAL=$?
527 if test "x$RETVAL" != x0 ; then
528 tail make.tr_log
529 echo failed
530 cp genmake.log genmake.tr_log $CDIR
531 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
532 rm -f $EXECUTABLE
533 mk_fail=1
534 else
535 echo successful
536 fi
537 else
538 echo "no Makefile !"
539 mk_fail=2
540 fi
541 fi
542 if test $KIND = 1 -a -f taf_ftl.log ; then
543 head -1 taf_ftl.log >> $CDIR"/summary.txt"
544 fi
545 if test $KIND = 2 -a -f taf_ad.log ; then
546 head -1 taf_ad.log >> $CDIR"/summary.txt"
547 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
548 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
549 if test -f taf_output ; then
550 n2er=`grep -c 'TAF *.* ERROR ' taf_output`
551 n3er=`grep -c '\*ERROR\* ' taf_output`
552 nerr=`expr $nerr + $n2er + $n3er`
553 fi
554 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
555 >> $CDIR"/summary.txt"
556 fi
557 if test $mk_fail != 0 ; then return $mk_fail ; fi
558 )
559 }
560
561 mk_mpi_size()
562 {
563 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
564 #
565 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
566 # for an MPI build with no more than proc_Nb processors ;
567 # ensure that enough tiles per proc (nSx,nSy) remain for the given
568 # number of threads (nTx,nTy) ;
569 # return the effective number of processors.
570
571 inp=$1
572 out=$2
573 np=$3
574 tx=$4
575 ty=$5
576 tmp=TTT.$$
577
578 # dirX : select with direction to favor in MPI process repartition
579 # dirX=1 : prefer to put more proc in X direction
580 # dirX=0 : prefer to put more proc in Y direction
581 dirX=0
582
583 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
584 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
585 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
586 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
587
588 #- for each direction, assume # of threads is a multiple of total number of tiles
589 nx=$px
590 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
591 nx=`expr $sx \* $px / $tx`
592 if [ $verbose -gt 1 ]; then
593 echo " change px from $px to $nx to accommodate $tx threads"
594 fi
595 fi
596 ny=$py
597 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
598 ny=`expr $sy \* $py / $ty`
599 if [ $verbose -gt 1 ]; then
600 echo " change py from $py to $ny to accommodate $ty threads"
601 fi
602 fi
603 #- find the largest divisor of input_file proc Nb, but not larger than $np
604 pp=0
605 i=1
606 while [ $i -le $nx ] ; do
607 if [ `expr $nx % $i` -eq 0 ] ; then
608 j=1
609 while [ $j -le $ny ] ; do
610 if [ `expr $ny % $j` -eq 0 ] ; then
611 ij=`expr $i \* $j`
612 if [ $ij -gt $pp ] ; then
613 flag=1
614 elif [ $ij -eq $pp ] ; then
615 flag=$dirX
616 else
617 flag=0
618 fi
619 if test $flag = 1 ; then
620 if [ $ij -le $np ] ; then
621 ix=$i ; jy=$j ; pp=$ij
622 #echo " ix,jy= $ix,$jy"
623 fi
624 fi
625 fi
626 j=`expr $j + 1`
627 done
628 fi
629 i=`expr $i + 1`
630 done
631
632 #- create new SIZE.h type file:
633 sx=`expr $sx \* $px / $ix`
634 sy=`expr $sy \* $py / $jy`
635 if [ $verbose -gt 1 ]; then
636 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
637 fi
638 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
639 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
640 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
641 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
642 rm -f $tmp
643 return $pp
644 }
645
646 symlink_mpifiles()
647 {
648 # Put special links so that MPI specific files are used
649 # This MUST be invoked between makeclean and makelinks because
650 # the Makefile will link to non-mpi files by default
651
652 dir=$1
653 code_dir=$2
654 build_dir=$dir/$3
655
656 # These are files that should replace their counter-part when using -mpi
657 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
658
659 for ii in $MPI_FILES ; do
660 i=`echo $ii | sed 's:^\./::'`
661 name=`echo $i | sed 's:_mpi::'`
662 file="../$code_dir/$i"
663 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
664
665 # Is this an MPI run?
666 if test "x$MPI" = x0 ; then
667 # NO: We undo any _mpi symbolically linked files
668 if test -L $build_dir/$name ; then
669 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
670 RETVAL=$?
671 if test "x$RETVAL" = x0 ; then
672 if [ $verbose -gt 1 ]; then
673 echo " Un-linking $name from ../$code_dir" ; fi
674 rm -f $build_dir/$name
675 fi
676 fi
677 else
678 # YES: We symbolically link these files to the build
679 # dir so long as there is no real file in place
680 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
681 RETVAL=$?
682 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
683 if test "x$RETVAL" != x0 ; then
684 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
685 if test ! -r $build_dir/$name ; then
686 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
687 (cd $build_dir; ln -sf $file $name)
688 fi
689 fi
690 fi
691 done
692 }
693
694 linkdata()
695 {
696 # linkdata run_dir input_dir_1 input_dir_2 ...
697 #
698 # symbolically link data files to run directory
699 if test -d $1 ; then
700 (
701 cd $1 ; shift
702 echo 'linkdata from dirs:' $*
703 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
704 for xx in $inpMPI ; do
705 if test -r "../"$1"/"$xx ; then
706 # found 1 _mpi sfx file in 1rst input dir and it is readable
707 yy=`echo $xx | sed 's:\.mpi$::'`
708 if test "x$MPI" = "x0" ; then
709 # not mpi test: remove symbolic link
710 if test -h $yy ; then rm -f $yy ; fi
711 else
712 # mpi test: remove symbolic link & link .mpi sfx file
713 if test -h $yy ; then rm -f $yy ; fi
714 if test ! -r $yy ; then
715 ln -sf "../"$1"/"$xx $yy ;
716 printf " $xx" 1>&2
717 fi
718 fi
719 fi
720 done
721 if test -r "../"$1"/eedata.mth" ; then
722 # found eedata.mth in 1rst input dir and it is readable
723 if test "x$MULTI_THREAD" = "xt" ; then
724 # multi-threaded test: remove symbolic link & link eedata.mth
725 if test -h eedata ; then rm -f eedata ; fi
726 if test ! -r eedata ; then
727 ln -sf "../"$1"/eedata.mth" eedata ;
728 printf ' eedata.mth' 1>&2
729 fi
730 else
731 # not multi-threaded test: remove eedata symbolic link
732 if test -h eedata ; then rm -f eedata ; fi
733 fi
734 fi
735 prevDir='NONE'
736 for ldir in $* ; do
737 if test -d "../"$ldir -a $ldir != $prevDir ; then
738 printf " ldir=${ldir}:" 1>&2
739 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
740 for i in $files ; do
741 if test ! -d "../"$ldir/$i ; then
742 if test ! -r $i ; then
743 printf ' '$i 1>&2
744 ln -sf "../"$ldir"/"$i $i
745 fi
746 fi
747 done
748 printf ' ;' 1>&2
749 if test -x "../"$ldir"/"prepare_run ; then
750 "../"$ldir"/"prepare_run 1>&2
751 else
752 echo '' 1>&2
753 fi
754 fi
755 prevDir=$ldir
756 done
757 )
758 fi
759 }
760
761 runmodel()
762 {
763 # runmodel directory
764 #
765 # runs $COMMAND in "directory"
766 # (where "$COMMAND" is relative to "directory")
767 (
768 cd $1
769 printf 'runmodel in %s ... ' $1
770 if test "x$MPI" != x0 ; then
771 #- adjust the MPI run command with the right number of Procs
772 #echo '' ; echo " COMMAND='$COMMAND'"
773 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
774 if test "x$MPI_MFILE" != x ; then
775 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
776 fi
777 #echo " COMMAND='$COMMAND'"
778 fi
779 if test -L $EXECUTABLE ; then
780 if test -x "../"$builddir"/"$EXECUTABLE ; then
781 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
782 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
783 else rm -f $EXECUTABLE
784 fi
785 fi
786 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
787 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
788 ln -sf "../"$builddir"/"$EXECUTABLE .
789 fi
790 if test ! -x $EXECUTABLE ; then
791 rm -f $RUNLOG ; touch $RUNLOG
792 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
793 echo " no executable:" $EXECUTABLE >> $RUNLOG
794 RETVAL=8
795 ENDVAL=-1
796 else
797 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
798 # output do not exist or is older than executable:
799 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
800 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
801 #- Divided Adjoint Run:
802 # get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
803 if test $KIND = 2 -a -f run_ADM_DIVA ; then
804 adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
805 echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
806 eval "let $adm_diva_nb"
807 if [ $add_DIVA_runs -ge 1 ] ; then
808 rm -f costf* divided.ctrl snapshot*
809 echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
810 for ii in `seq 1 $add_DIVA_runs` ; do
811 ( eval $COMMAND ) >> $RUNLOG 2>&1
812 echo " additional DIVA run # $ii : done" >> $RUNLOG
813 mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
814 done
815 fi
816 fi
817 #- special DIVA processing ends here
818 ( eval $COMMAND ) >> $RUNLOG 2>&1
819 RETVAL=$?
820 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
821 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
822 find . -name "*.meta" -exec rm {} \;
823 find . -name "*.data" -exec rm {} \;
824 rm -rf mnc_test_*
825 fi
826 else
827 RETVAL=0
828 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
829 touch $RUNLOG
830 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
831 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
832 fi
833 fi
834 rm -f run.log_tmp
835 #- in all cases where OutputFile exists, report SIZE and time
836 if test -f $OUTPUTFILE ; then
837 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
838 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
839 grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
840 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
841 fi
842 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
843 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
844 echo successful
845 printf '=> output from running in %s :\n' $1 1>&2
846 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
847 return 0
848 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
849 #-- for some weird cases (run is finihed but with error code)
850 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
851 printf '=> output from running in %s :\n' $1 1>&2
852 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
853 return 0
854 else
855 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
856 printf '=> output from running in %s :\n' $1 1>&2
857 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
858 cp $RUNLOG $CDIR"/"$RUNLOG
859 return 1
860 fi
861 )
862 }
863
864 createcodelet()
865 {
866 # create codelet for comparing model output
867
868 printf "creating the comparison code (using CC=$CC)... "
869 cat > tr_cmpnum.c <<EOF
870 #include <stdio.h>
871 #include <math.h>
872 int main( int argc, char** argv ) {
873 int linnum,cmplin,best,lncnt;
874 double a,b,abave,relerr;
875 best = -22;
876 lncnt = 0;
877 while( 1 & ( (lncnt+=1) < 999 ) ) {
878 scanf("%d", &linnum);
879 if (linnum == -1) break;
880 scanf("%lf", &a); scanf("%lf", &b);
881 abave = 0.5*(fabs(a)+fabs(b));
882 if ( abave == abave ) {
883 if (abave > 0.0) {
884 relerr=fabs(a-b)/abave;
885 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
886 else { cmplin = -16 ; }
887 best = (best > cmplin) ? best : cmplin; }
888 else { cmplin = -22 ; }
889 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
890 }
891 else {
892 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
893 break; }
894 }
895 if (lncnt == 999) best=-29;
896 if (linnum != -1) best=-99;
897 printf("%d\n", -best);
898 return 0;
899 }
900 EOF
901 $CC -o tr_cmpnum tr_cmpnum.c -lm
902
903 if [ -x ./tr_cmpnum ]; then
904 echo "OK"
905 return 0
906 else
907 echo
908 echo "ERROR: failed to compile comparison code -- please specify"
909 echo " a C compiler using the CC environment variable."
910 exit 1
911 fi
912 }
913
914 formatresults()
915 {
916 # formatresults expt genmake depend make run results*
917
918 nm=$1
919 printf '%s %s %s %s' $2 $3 $4 $5
920 shift; shift; shift; shift; shift;
921 listPrt=$@
922 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
923 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
924 printf '%3s' $listPrt
925 # line below does not work on hp-ux_ia64 : do those substitutions later on
926 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
927
928 if [ $xx = '..' ]; then
929 printf ' N/O '
930 elif [ $xx = '--' ]; then
931 printf ' N/O '
932 elif [ $xx = 99 ]; then
933 printf ' N/O '
934 else
935 if [ $xx -ge $MATCH_CRIT ]; then
936 printf ' pass'
937 else
938 printf ' FAIL'
939 fi
940 fi
941 printf ' %s' $nm
942 if test $KIND = 2 ; then
943 #-- apppend taf repport summary:
944 tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
945 if test $tafrep = 1 ; then
946 grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
947 fi
948 fi
949 printf '\n'
950
951 }
952
953 scandirs()
954 {
955 if [ $# -eq 1 ]; then
956 for arg in * ; do
957 #test -f $arg/$1 && echo $arg
958 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
959 done
960 else
961 echo $*
962 fi
963 }
964
965
966 check_eedata()
967 {
968 # check_eedata eedata size.h
969 if [ $# -eq 2 ] ; then
970 if test -f $1 -a -f $2 ; then
971 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
972 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
973 if test "x$nx" = x ; then
974 rx=10
975 else
976 rx=`expr $sx % $nx`
977 fi
978 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
979 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
980 if test "x$ny" = x ; then
981 ry=20
982 else
983 ry=`expr $sy % $ny`
984 fi
985 echo `expr $rx + $ry`
986 else
987 echo '-1'
988 fi
989 elif [ $# -eq 1 ] ; then
990 if test -f $1 ; then
991 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
992 if test "x$nx" = x ; then nx=1 ; fi
993 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
994 if test "x$ny" = x ; then ny=1 ; fi
995 #echo $nx $ny
996 echo $nx
997 else
998 echo '-1'
999 fi
1000 else
1001 echo '-2'
1002 fi
1003
1004 }
1005
1006 ###############################################################################
1007
1008
1009 # Default properties
1010 debug=0
1011 verbose=1
1012 NBLINES_MKLOG=16000
1013
1014 OptLev=1
1015 GSL=f
1016
1017 CLEANUP=f
1018 NORUN=f
1019 QUICK=f
1020 NOMAKE=f
1021 NOGENMAKE=f
1022 NOCLEAN=f
1023 NODEPEND=f
1024 POSTCLEAN=0
1025
1026 BASH=
1027 OPTFILE=NONE
1028 ADDRESSES=
1029 TESTDIRS=
1030 SKIPDIRS=
1031 MPACKDIR="../tools/mpack-1.6"
1032 HAVE_MPACK=
1033 MPACK=
1034 COMMAND=
1035 MKDEPEND=
1036 if test "x$MAKE" = x ; then
1037 MAKE=make
1038 fi
1039 REPLMAKE=
1040 if test "x$CC" = x ; then
1041 CC=cc
1042 fi
1043 JOBS=
1044 TARG=
1045 MPI=0
1046 MPI_MFILE=
1047 MULTI_THREAD=f
1048 OUTDIR=
1049 DELDIR=
1050 USE_R4=
1051 EXTRFLG=
1052
1053 #- type of testing (KIND):
1054 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1055 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1056 KIND=0
1057
1058 # list of pTracers to check for monitor output
1059 PTRACERS_NUM="1 2 3 4 5"
1060
1061 MATCH_CRIT=10
1062
1063 printf "parsing options... "
1064
1065 ac_prev=
1066 for ac_option ; do
1067
1068 # If the previous option needs an argument, assign it.
1069 if test -n "$ac_prev"; then
1070 eval "$ac_prev=\$ac_option"
1071 ac_prev=
1072 continue
1073 fi
1074
1075 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1076
1077 case $ac_option in
1078
1079 -help | --help | -h | --h) usage ;;
1080
1081 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1082 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1083
1084 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1085 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1086 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1087 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1088
1089 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1090 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1091 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1092 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1093
1094 -bash | --bash | -b | --b) ac_prev=BASH ;;
1095 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1096
1097 -command | --command | -c | --c) ac_prev=COMMAND ;;
1098 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1099
1100 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1101 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1102
1103 -make | --make | -m | --m) ac_prev=MAKE ;;
1104 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1105
1106 -repl_mk | --repl_mk ) ac_prev=REPLMAKE ;;
1107 -repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;;
1108
1109 -odir | --odir) ac_prev=OUTDIR ;;
1110 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1111
1112 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1113 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1114
1115 -match | --match ) ac_prev=MATCH_CRIT ;;
1116 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1117
1118 -j | --j) ac_prev=JOBS ;;
1119 -j=* | --j=*) JOBS=$ac_optarg ;;
1120
1121 -ef | --ef) ac_prev=EXTRFLG ;;
1122 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1123
1124 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1125
1126 -norun | --norun | -nr | --nr) NORUN=t ;;
1127 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1128 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1129 -quick | --quick | -q | --q) QUICK=t ;;
1130 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1131 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1132 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1133
1134 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1135 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1136
1137 -mpi | --mpi) MPI=2 ;;
1138 -MPI | --MPI) ac_prev=MPI ;;
1139 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1140
1141 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1142 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1143
1144 -mth) MULTI_THREAD=t ;;
1145
1146 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1147 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1148 fi ;;
1149 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1150 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1151 fi ;;
1152 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1153 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1154 fi ;;
1155
1156 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1157 printf " ... " ;;
1158 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1159 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1160 -fast) OptLev=`expr $OptLev \* 2` ;;
1161 -devel) OptLev=0 ;;
1162 -gsl) GSL=t ;;
1163
1164 -verbose) verbose=2 ;;
1165 -debug) debug=1 ;;
1166 -quiet) verbose=0 ;;
1167
1168 -deldir | -dd) DELDIR=t ;;
1169
1170 -use_r4|-ur4) USE_R4=t ;;
1171
1172 -ts) TS=t;;
1173 -papis) PAPIS=t;;
1174 -pcls) PCL=t;;
1175
1176 -*) echo "Error: unrecognized option: "$ac_option
1177 usage ;;
1178 *) echo "Error: unrecognized argument: "$ac_option
1179 usage ;;
1180
1181 esac
1182
1183 done
1184
1185 if test "x$QUICK" = xt ; then
1186 NOGENMAKE=t
1187 NOCLEAN=t
1188 NODEPEND=t
1189 fi
1190
1191 #- check length of MPI machine file:
1192 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1193 if test -r $MPI_MFILE ; then
1194 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1195 if [ $nl -lt $MPI ] ; then
1196 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1197 usage
1198 fi
1199 if [ $verbose -gt 1 ]; then
1200 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1201 fi
1202 else
1203 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1204 usage
1205 fi
1206 fi
1207
1208 #- setting for forward or ADM testing
1209 if test $KIND = 1 ; then
1210 TARG=ftlall
1211 code_dir=code_ad
1212 inputdir=input_ad
1213 ref_outp="output_tlm.txt"
1214 EXECUTABLE="mitgcmuv_ftl"
1215 elif test $KIND = 2 ; then
1216 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1217 code_dir=code_ad
1218 inputdir=input_ad
1219 ref_outp="output_adm.txt"
1220 EXECUTABLE="mitgcmuv_ad"
1221 elif test $KIND = 4 ; then
1222 TARG=adAll
1223 code_dir=code_oad
1224 inputdir=input_oad
1225 ref_outp="output_oadm.txt"
1226 EXECUTABLE="mitgcmuv_ad"
1227 else
1228 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1229 code_dir=code
1230 inputdir=input
1231 ref_outp="output.txt"
1232 EXECUTABLE="mitgcmuv"
1233 fi
1234
1235 xx=`echo $TESTDIRS | awk '{print $1}'`
1236 if test "x$TESTDIRS" = x ; then
1237 LIST=`scandirs results/$ref_outp`
1238 elif test $xx = 'start_from' ; then
1239 xx=`echo $TESTDIRS | awk '{print $2}'`
1240 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1241 else
1242 #- expand group of experiments:
1243 LIST=" "
1244 for xx in $TESTDIRS
1245 do
1246 case $xx in
1247 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1248 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1249 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1250 ;;
1251 'tutorials')
1252 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1253 *) LIST=${LIST}" "$xx ;;
1254 esac
1255 done
1256 fi
1257 #echo 'LIST='${LIST}'<'
1258 #- skip dirs, remove duplicate and non-directory:
1259 TESTDIRS=" "
1260 count=0
1261 for xx in $LIST
1262 do
1263 yy=`echo $SKIPDIRS | grep -c $xx`
1264 if test $yy = 0 ; then
1265 if test -d $xx ; then
1266 yy=`echo $TESTDIRS | grep -c $xx`
1267 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1268 else count=1 ;
1269 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1270 fi
1271 else
1272 if test $count = 1 ; then echo -n ", \"$xx\""
1273 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1274 fi
1275 fi
1276 done
1277 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1278 #echo 'TESTDIRS='${TESTDIRS}'<'
1279
1280 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1281 OPTFILE=$MITGCM_OF
1282 fi
1283
1284 LOC_MFILE='tr_mpi_mfile'
1285 RUNLOG="run.tr_log"
1286 OUTPUTFILE=$ref_outp
1287 if test "x$COMMAND" = x ; then
1288 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1289 fi
1290 if test "x$MPI" != x0 ; then
1291 OUTPUTFILE="STDOUT.0000"
1292 fi
1293
1294 echo "OK (COMMAND= $COMMAND )"
1295
1296 # set the Default List of output variables to be checked:
1297 # (use default or load experiment-specific list from file "tr_checklist")
1298 # content : 1rst = main variable used to decide if it pass or FAIL
1299 # others = number of matching digits to be printed in summary.txt
1300 if test $KIND = 1 ; then
1301 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1302 EMPTY_RESULTS='.. .. ..'
1303 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1304 elif test $KIND = 2 -o $KIND = 4 ; then
1305 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1306 EMPTY_RESULTS='.. .. ..'
1307 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1308 else
1309 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1310 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1311 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1312 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1313 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1314 fi
1315
1316 # create the FORTRAN comparison code
1317 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1318 echo "skipping comparison code build"
1319 else
1320 createcodelet
1321 fi
1322
1323 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1324 if test "x$ADDRESSES" = x ; then
1325 echo "skipping mpack build"
1326 else
1327 build_mpack
1328 fi
1329
1330 # Create a uniquely named directory to store results
1331 CMDLINE=$0
1332 for xx in "$@" ; do nw=`echo $xx | wc -w`
1333 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1334 nb=`echo $xx | grep -c '='`
1335 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1336 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1337 CMDLINE="$CMDLINE $yy" ; fi
1338 fi
1339 done
1340 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1341 MACH=`hostname`
1342 UNAMEA=`uname -a`
1343 DATE=`date +%Y%m%d`
1344 BASE="tr_"$MACH"_"$DATE"_"
1345 if test "x$OUTDIR" != x ; then
1346 BASE="tr_"$OUTDIR"_"$DATE"_"
1347 else
1348 short_name=`hostname | sed 's/\..*$//'`
1349 BASE="tr_"$short_name"_"$DATE"_"
1350 fi
1351 DNUM=0
1352 DRESULTS="$BASE$DNUM"
1353 while test -e $DRESULTS ; do
1354 DNUM=$(( $DNUM + 1 ))
1355 DRESULTS="$BASE$DNUM"
1356 done
1357 mkdir $DRESULTS
1358 RETVAL=$?
1359 if test "x$RETVAL" != x0 ; then
1360 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1361 exit 1
1362 fi
1363 SUMMARY="$DRESULTS/summary.txt"
1364 start_date=`date`
1365 echo $start_date > $SUMMARY
1366 echo 'run:' $CMDLINE >> $SUMMARY
1367 echo 'on :' $UNAMEA >> $SUMMARY
1368
1369 of_path=
1370 if test "x$OPTFILE" != xNONE ; then
1371 if test -r $OPTFILE ; then
1372 # get the path
1373 path=${OPTFILE%/*}
1374 if test "x$path" = x ; then
1375 of_path=`pwd`
1376 else
1377 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1378 fi
1379 file=${OPTFILE##*/}
1380 OPTFILE=$of_path/$file
1381 cp $OPTFILE $DRESULTS
1382 echo >> $SUMMARY
1383 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1384 else
1385 echo | tee -a $SUMMARY
1386 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1387 exit 1
1388 fi
1389 else
1390 echo >> $SUMMARY
1391 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1392 #-note: to be filled later after 1rst run
1393 fi
1394 echo
1395 echo >> $SUMMARY
1396 if test $KIND = 0 ; then
1397 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1398 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1399 line_1="G D M c m s m s m s m s"
1400 line_2="e p a R g m m e . m m e . m m e . m m e ."
1401 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1402 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1403 for ii in $PTRACERS_NUM ; do
1404 line_0="$line_0 --PTR 0"$ii"--"
1405 line_1="$line_1 m s"
1406 line_2="$line_2 m m e ."
1407 line_3="$line_3 i a a d"
1408 line_4="$line_4 n x n ."
1409 done
1410 else
1411 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1412 if test $KIND = 1 ; then
1413 #echo "TANGLIN=true" >> $SUMMARY
1414 echo "TangLin generated by TAF" >> $SUMMARY
1415 elif test $KIND = 3 ; then
1416 echo "TangLin generated by OpenAD" >> $SUMMARY
1417 elif test $KIND = 2 ; then
1418 #echo "ADJOINT=true" >> $SUMMARY
1419 echo "Adjoint generated by TAF" >> $SUMMARY
1420 else
1421 echo "Adjoint generated by OpenAD" >> $SUMMARY
1422 fi
1423 if test $KIND = 1 -o $KIND = 3 ; then
1424 line_1="G D M C T F"
1425 line_2="e p a R o L D"
1426 else
1427 line_1="G D M C A F"
1428 line_2="e p a R o d D"
1429 fi
1430 line_3="n n k u s G G"
1431 line_4="2 d e n t r r"
1432 echo >> $SUMMARY
1433 fi
1434 if test "x$CLEANUP" != xt ; then
1435 echo "$line_0" | tee -a $SUMMARY
1436 echo "$line_1" | tee -a $SUMMARY
1437 echo "$line_2" | tee -a $SUMMARY
1438 echo "$line_3" | tee -a $SUMMARY
1439 echo "$line_4" | tee -a $SUMMARY
1440 echo "" | tee -a $SUMMARY
1441 fi
1442 echo "-------------------------------------------------------------------------------"
1443
1444 # ...and each test directory...
1445 for dir in $TESTDIRS ; do
1446
1447 # set builddir & rundir:
1448 builddir="build"
1449 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1450 rundir="run"
1451 pfxdir="tr_$rundir"
1452 if test ! -d $dir/$rundir ; then
1453 rundir=$builddir
1454 fi
1455 CODE_DIR=$dir/$code_dir
1456 BUILD_DIR=$dir/$builddir
1457
1458 # Cleanup only!
1459 if test "x$CLEANUP" = xt ; then
1460 echo -n ' --- dir:' $BUILD_DIR ': '
1461 makeclean $BUILD_DIR
1462 ( cd $BUILD_DIR
1463 rm -f $EXECUTABLE *.bak
1464 rm -f genmake_state genmake_*optfile genmake.log
1465 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1466 rm -rf mpi_headers
1467 )
1468 if test -d $dir/$rundir/CVS ; then
1469 echo -n ' --- dir:' $dir/$rundir ': '
1470 run_clean $dir/$rundir
1471 fi
1472 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1473 ttd=`echo $trdir | wc -w`
1474 if test $ttd != 0 ; then
1475 echo ' --- rm dir:' $trdir
1476 ( cd $dir ; rm -rf $trdir )
1477 fi
1478 continue
1479 fi
1480
1481 # Verify that the testdir exists and contains previous
1482 # results in the correct location--or skip this directory!
1483 fout=$dir"/results/"$ref_outp
1484 #if test ! -r $fout ; then
1485 if test ! -r $fout -a ! -r ${fout}.gz ; then
1486 echo "can't read \"$fout\" -- skipping $dir"
1487 continue
1488 fi
1489
1490 # Check for specific files for particular type of run
1491
1492 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1493 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1494 continue
1495 fi
1496 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1497 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1498 continue
1499 fi
1500
1501 if test "x$MPI" != "x0" ; then
1502 ntx=1 ; nty=1
1503 if test "x$MULTI_THREAD" = "xt" ; then
1504 ff=$dir"/input/eedata.mth"
1505 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1506 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1507 if test "x$ntx" = x ; then ntx=1 ; fi
1508 if test "x$nty" = x ; then nty=1 ; fi
1509 fi
1510 #- create new SIZE.h with no more than '$MPI' Procs
1511 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1512 LOC_NPROC=$?
1513 ( cd $BUILD_DIR
1514 if test -r SIZE.h.mpi ; then
1515 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1516 else RETVAL=1
1517 fi
1518 if test "x$RETVAL" = x0 ; then
1519 rm -f tr_size.mpi
1520 else
1521 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1522 fi
1523 )
1524 if test "x$MPI_MFILE" != x ; then
1525 #- create new MPI machine-file with the right number of Procs
1526 rm -f $LOC_MFILE
1527 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1528 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1529 if [ $nl -lt $LOC_NPROC ] ; then
1530 rm -f $LOC_MFILE
1531 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1532 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1533 fi
1534 if [ $verbose -gt 1 ]; then
1535 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1536 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1537 fi
1538 fi
1539 if test "x$MULTI_THREAD" = "xt" ; then
1540 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1541 if test $retv != 0 ; then
1542 echo "input/eedata.mth tiling misfit -- skipping $dir"
1543 continue
1544 fi
1545 fi
1546 fi
1547
1548 # Check whether there are "extra runs" for this testdir
1549 extra_runs=
1550 if test "x$NORUN" = xf ; then
1551 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1552 fi
1553 #echo "ex_run_dirs='$ex_run_dirs'"
1554 for exd in $ex_run_dirs ; do
1555 name=`echo $exd | sed -e "s/$inputdir\.//"`
1556 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1557 outf="$dir/results/$refExOut"
1558 if test -r $outf -o -r ${outf}.gz ; then
1559 if test "x$MULTI_THREAD" = "xt" ; then
1560 if test -r $dir"/"$exd"/eedata.mth" ; then
1561 if test "x$MPI" = "x0" ; then
1562 extra_runs="$extra_runs $name"
1563 else
1564 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1565 if test $retv = 0 ; then
1566 extra_runs="$extra_runs $name"
1567 else
1568 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1569 fi
1570 fi
1571 #else echo $dir"/"$exd"/eedata.mth: not found"
1572 fi
1573 else
1574 extra_runs="$extra_runs $name"
1575 fi
1576 fi
1577 done
1578
1579 echo
1580 if test "x$extra_runs" = "x" ; then
1581 echo "Experiment: $dir"
1582 else
1583 echo "Experiment: $dir ; extra_runs=$extra_runs"
1584 fi
1585 echo
1586 unset genmake makedepend make run
1587 results=$EMPTY_RESULTS
1588
1589 # Create an output dir & summary.txt file for each tested experiment (tdir)
1590 locDIR=$DRESULTS"/"$dir
1591 mkdir $locDIR
1592 #- report to this experiment local summary file ---
1593 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1594 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1595 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1596 CDIR=`pwd`"/$locDIR"
1597
1598 if test "x$NORUN" = xt ; then
1599 run=N
1600 genmakemodel $dir/$builddir && genmake=Y \
1601 && makeclean $dir/$builddir \
1602 && symlink_mpifiles $dir $code_dir $builddir \
1603 && makedependmodel $dir/$builddir && makedepend=Y \
1604 && makemodel $dir/$builddir && make=Y
1605 else
1606 genmakemodel $dir/$builddir && genmake=Y \
1607 && makeclean $dir/$builddir \
1608 && symlink_mpifiles $dir $code_dir $builddir \
1609 && makedependmodel $dir/$builddir && makedepend=Y \
1610 && makemodel $dir/$builddir && make=Y \
1611 && run_clean $dir/$rundir \
1612 && linkdata $dir/$rundir $inputdir \
1613 && runmodel $dir/$rundir && run=Y \
1614 && results=`testoutput_run $dir $rundir $ref_outp`
1615 fi
1616 #echo "results='$results'"
1617
1618 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1619 echo 1>&2
1620 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1621 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1622
1623 for ex in $extra_runs ; do
1624 unset run
1625 results=$EMPTY_RESULTS
1626 # reference output file
1627 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1628 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1629 locDIR=$DRESULTS"/"$dir"."$ex
1630 mkdir $locDIR
1631 #- report to this experiment local summary file ---
1632 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1633 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1634 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1635 CDIR=`pwd`"/$locDIR"
1636 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1637 run_clean $dir/$pfxdir.$ex
1638 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1639 runmodel $dir/$pfxdir.$ex && run=Y \
1640 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1641 fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1642 echo 1>&2
1643 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1644 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1645 if test "x$POSTCLEAN" = x2 ; then
1646 run_clean $dir/$pfxdir.$ex
1647 fi
1648 done
1649
1650 if test ! -f $DRESULTS"/"genmake_state ; then
1651 if test -f $dir/$builddir/Makefile ; then
1652 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1653 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1654 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1655 echo " $mkOpt" >> $DRESULTS/genmake_state
1656 if test "x$OPTFILE" = xNONE ; then
1657 eval $mkOpt
1658 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1659 $SUMMARY > tmp.tr_log
1660 RETVAL=$?
1661 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1662 cp tmp.tr_log $SUMMARY
1663 else rm -f tmp.tr_log
1664 fi
1665 fi
1666 gmkLog=$dir/$builddir/genmake.log
1667 if test -r $gmkLog ; then
1668 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1669 RETVAL=$?
1670 if test "x$RETVAL" = x0 ; then
1671 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1672 echo "extract compiler version:" >> $DRESULTS/genmake_state
1673 sed -n '/Get compiler version/,/<-- compiler version/p' \
1674 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1675 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1676 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1677 >> $DRESULTS/genmake_state
1678 rm -f tmp.tr_log
1679 fi
1680 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1681 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1682 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1683 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1684 fi
1685 fi
1686 fi
1687 #postclean $dir/$builddir
1688 if test "x$POSTCLEAN" = x2 ; then
1689 makeclean $dir/$builddir \
1690 && run_clean $dir/$rundir
1691 fi
1692 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1693
1694 echo "-------------------------------------------------------------------------------"
1695
1696 done
1697
1698 printf "Start time: " >> $SUMMARY
1699 echo "$start_date" >> $SUMMARY
1700 printf "End time: " >> $SUMMARY
1701 date >> $SUMMARY
1702
1703 # If addresses were supplied and mpack built successfully, then try
1704 # to send email using mpack.
1705 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1706 echo "No results email was sent."
1707 else
1708 if test "x$HAVE_MPACK" = xt ; then
1709 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1710 && gzip $DRESULTS".tar" \
1711 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1712 RETVAL=$?
1713 if test "x$RETVAL" != x0 ; then
1714 echo
1715 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1716 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1717 echo " summary of results from the directory \"$DRESULTS\"."
1718 echo
1719 else
1720 echo
1721 echo "An email containing results was sent to the following addresses:"
1722 echo " \"$ADDRESSES\""
1723 echo
1724 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1725 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1726 fi
1727 fi
1728 fi
1729
1730 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1731 rm -f tr_cmpnum.c tr_cmpnum
1732 fi
1733
1734 if test "x$CLEANUP" != xt ; then
1735 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1736 if test -e tr_out.txt ; then
1737 mv tr_out.txt tr_out.txt.old
1738 fi
1739 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1740 fi
1741
1742 if test "x$DELDIR" = xt ; then
1743 rm -rf $DRESULTS
1744 fi
1745 echo "======== End of testreport execution ========"

  ViewVC Help
Powered by ViewVC 1.1.22