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Revision 1.185 - (show annotations) (download)
Sun Jul 7 00:33:19 2013 UTC (10 years, 8 months ago) by jmc
Branch: MAIN
Changes since 1.184: +2 -1 lines
improve cleaning for OpenAD test

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.184 2013/06/13 19:05:32 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
19 echo " DEF=off => use IEEE numerics option (if available)"
20 echo " (-devel) use optfile developement flags (if available)"
21 echo " (-gsl) compile with \"-gsl\" flag"
22 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
23 echo " (-optfile|-of) STRING list of optfiles to use"
24 echo " (-addr|-a) STRING list of email recipients"
25 echo " (DEF=\"\" no email is sent)"
26 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
27 echo " (DEF=\"../tools/mpack-1.6\")"
28 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
29 echo " (recognized groups: basic, tutorials)"
30 echo " (DEF=\"\" which test all)"
31 echo " (if list= 'start_from THIS_EXP' then"
32 echo " test THIS_EXP + all the following)"
33 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
34 echo " (DEF=\"\" which test all)"
35 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
36 echo " Bourne-compatible \"sh\" shell"
37 echo " (DEF=\"\" for \"bash\")"
38 echo " (-tlm) perform a Tangent Linear run"
39 echo " (-adm|-ad) perform an adjoint run"
40 echo " (-oad) perform an OpenAD adjoint run"
41 echo " (-command|-c) STRING command to run"
42 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
43 echo " (-make|-m) STRING command to use for \"make\""
44 echo " (DEF=\"make\")"
45 echo " (-odir) STRING used to build output directory name"
46 echo " (DEF=\"hostname\")"
47 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
48 # echo " (DEF=\"1 2 3 4 5\")"
49 echo " (-match) NUMBER Matching Criteria (number of digits)"
50 echo " (DEF=\"$MATCH_CRIT\")"
51 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
52 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
53 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
54 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
55 echo " (-obj) only produces objects (=norun & no executable)"
56 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
57 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
58 echo " (-nogenmake|-ng) skip the genmake stage"
59 echo " (-noclean|-nc) skip the \"make clean\" stage"
60 echo " (-nodepend|-nd) skip the \"make depend\" stage"
61 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
62 echo " (-deloutp|-do) delete output files after successful run"
63 echo " (-deldir|-dd) on success, delete the output directory"
64 echo " (-ts) provide timing information per timestep"
65 echo " (-papis) provide MFlop/s per timestep using PAPI"
66 echo " (-pcls) provide MFlop/s per timestep using PCL"
67 echo
68 echo "and where STRING can be a whitespace-delimited list"
69 echo "such as:"
70 echo
71 echo " -t 'exp0 exp2 exp3' "
72 echo " -addr='abc@123.com testing@home.org'"
73 echo
74 echo "provided that the expression is properly quoted within the current"
75 echo "shell (note the use of single quotes to protect white space)."
76 echo
77 exit 1
78 }
79
80 # build the mpack utility
81 build_mpack()
82 {
83 printf "building the mpack utility... "
84 MPACK="$MPACKDIR/mpack"
85 if test ! -x $MPACK ; then
86 if test ! -d $MPACKDIR ; then
87 echo
88 echo "Error: can't find \"$MPACKDIR\""
89 echo " are you sure this program is being run in the correct "
90 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
91 echo
92 HAVE_MPACK=f
93 fi
94 if test "x$CC" = x ; then
95 export CC=cc
96 fi
97 printf "building mpack (using CC=$CC)... "
98 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
99 RETVAL=$?
100 if test "x$RETVAL" != x0 ; then
101 echo
102 echo "Error building the mpack tools at: $MPACK_DIR"
103 echo
104 HAVE_MPACK=f
105 else
106 rm -f tr_build_mpack.out
107 HAVE_MPACK=t
108 echo "done"
109 fi
110 else
111 HAVE_MPACK=t
112 echo "already exist"
113 fi
114 }
115
116 testoutput_var()
117 {
118 # testoutput_var dir s1 label subdir reference_output
119 #
120 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
121 # with same output from reference file $dir/$reference_output
122 # using search strings s1 and text label
123
124 if [ $debug -gt 0 ]; then
125 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
126 fi
127 if [ -r $1/$4/$OUTPUTFILE ]; then
128 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
129 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
130 if [ $lncntA -lt 2 ]; then
131 if [ $verbose -gt 0 ]; then
132 echo Not enough lines of output when searching for "$2" 1>&2
133 fi
134 rm -f tmp1.txt ; return 99
135 fi
136 else
137 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
138 return 99
139 fi
140 if [ $debug -gt 0 ]; then
141 echo testoutput_var: grep "$2" $1/$5 1>&2
142 fi
143 grep "$2" $1/$5 | sed 's/.*=//' | cat -n > tmp2.txt
144 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
145 if [ $lncntB -lt 2 ]; then
146 if [ $verbose -gt 0 ]; then
147 echo Not enough lines of output when searching for "$2" 1>&2
148 fi
149 rm -f tmp1.txt tmp2.txt ; return 99
150 fi
151 if [ $lncntA -ne $lncntB ]; then
152 if [ $verbose -gt 0 ]; then
153 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
154 fi
155 rm -f tmp1.txt tmp2.txt ; return 99
156 fi
157 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
158 if [ $has_nan -gt 0 ] ; then
159 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
160 rm -f tmp1.txt tmp2.txt ; return 99
161 fi
162 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
163 if [ $has_inf -gt 0 ] ; then
164 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
165 rm -f tmp1.txt tmp2.txt ; return 99
166 fi
167 if [ $debug -gt 0 ]; then
168 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
169 fi
170 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
171 if [ $debug -gt 0 ]; then
172 echo testoutput_var: compare_lines 1>&2
173 fi
174 if [ $verbose -gt 1 ]; then
175 cat tmp3.txt 1>&2
176 fi
177 echo "-1" >> tmp3.txt
178 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
179 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
180 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
181 if [ $digits_of_similarity -eq 99 ]; then
182 if [ $verbose -gt 0 ]; then
183 echo testoutput_var: No comparison was available for \"$3\" 1>&2
184 fi
185 digits_of_similarity=99
186 else
187 if [ $verbose -gt 0 ]; then
188 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
189 fi
190 fi
191 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
192
193 return $digits_of_similarity
194 }
195
196 testoutput_run()
197 {
198 # testoutput_run directory subdir reference_output
199 #
200 # test output from 1 run in "directory"
201 # --> same processing for adjoint & forward test
202 # default list of output variables to be checked:
203 # 1rst : main variable used to decide if it pass or FAIL
204 # others : number of matching digits to be printed in summary.txt
205 listChk=$DEF_CHECK_LIST
206 # load experiment-specific list from file "tr_checklist" (if it exist)
207 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
208 sVar=`echo $listChk | awk '{print $1}'`
209 # remove 1rst var and expand the list: + => min max mean s.d
210 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
211 | sed 's/+//g' | sed "s/^$sVar//"`
212 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
213 # set ref.outp file-name and, if compressed, uncompress it into subdir
214 refoutp=results/$3
215 if test ! -r $1/results/$3 ; then
216 if test -r $1/results/${3}.gz ; then
217 tmpNam1=$3
218 tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
219 if test "x$tmpNam1" = "x$tmpNam2" ; then
220 tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
221 fi
222 refoutp=$2/$tmpNam1
223 if [ $debug -gt 0 ]; then
224 echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
225 fi
226 gzip -cd $1/results/${3}.gz > $1/$refoutp
227 else
228 echo "missing reference output file '$3' (.gz) in '$1/results/'"
229 fi
230 fi
231 # check for ptracer output in reference_output file :
232 if test $KIND = 0 ; then
233 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
234 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
235 for ii in $PTRACERS_NUM ; do
236 ptrfound=0
237 for jj in $ptr_mon ; do
238 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
239 tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
240 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
241 done
242 if test $ptrfound = '1' ; then
243 eval "HAVE_PTR0"$ii"=t"
244 else
245 eval "HAVE_PTR0"$ii"=f"
246 # remove this ptr from the list of output variable to check
247 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
248 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
249 fi
250 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
251 done
252 fi
253 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
254 if test $tst != 1 ; then
255 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
256 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
257 echo "==> WARNING: in checked list:" $listVar 1>&2
258 #- put it back once:
259 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
260 fi
261 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
262 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
263 #---
264 allargs=""
265 for xx in $listVar
266 do
267 case $xx in
268 'PS') if [ $debug -gt 0 ]
269 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
270 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
271 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
272 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
273 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
274 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
275 'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
276 'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
277 'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
278 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
279 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
280 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
281 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
282 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
283 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
284 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
285 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
286 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
287 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
288 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
289 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
290 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
291 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
292 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
293 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
294 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
295 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;;
296 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
297 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;;
298 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
299 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;;
300 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
301 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;;
302 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
303 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
304 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
305 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
306 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
307 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
308 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
309 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
310 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
311 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
312 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
313 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
314 'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
315 'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
316 'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
317 'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
318 'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
319 'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
320 'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
321 'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
322 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
323 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
324 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
325 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
326 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
327 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
328 'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
329 'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
330 'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
331 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
332 esac
333 if test $xx = $sVar
334 then allargs="$allargs > $yy <"
335 else allargs="$allargs $yy"
336 fi
337 done
338
339 nbVar=`echo $listVar | awk '{print NF}'`
340 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
341 #-- fill line (up to standard length) with dot:
342 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
343 echo $allargs $adNul
344 else
345 echo $allargs
346 fi
347 # <-- same processing for adjoint & forward test
348 }
349
350 genmakemodel()
351 {
352 # genmakemodel directory
353 if test "x$NOGENMAKE" = xt ; then
354 echo "genmake skipped!"
355 else
356 if test "x$BASH" = x ; then
357 GENMAKE2="../../../tools/genmake2"
358 else
359 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
360 fi
361 (
362 cd $1;
363 command="$GENMAKE2 -ds -m $MAKE"
364 if test "x$MKDEPEND" != x ; then
365 command="$command -makedepend=$MKDEPEND"
366 fi
367 if test $KIND = 1 -o $KIND = 2 ; then
368 command="$command --mods=../code_ad"
369 elif test $KIND = 4 ; then
370 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
371 else
372 command="$command -mods=../code"
373 fi
374 if test "x$OPTFILE" != xNONE ; then
375 command="$command -optfile=$OPTFILE"
376 fi
377 if test $OptLev = 1 ; then
378 command="$command -ieee"
379 fi
380 if test $OptLev = 0 ; then
381 command="$command -devel"
382 fi
383 if test "x$GSL" = xt ; then
384 command="$command -gsl"
385 fi
386 if test "x$MPI" != x0 ; then
387 command="$command -mpi"
388 fi
389 if test "x$MULTI_THREAD" = xt ; then
390 #- run multi-threaded using OpenMP:
391 command="$command -omp"
392 fi
393 if test "x$USE_R4" = xt ; then
394 command="$command -use_r4"
395 fi
396 if test "x$EXTRFLG" != x ; then
397 command="$command -extra_flag $EXTRFLG"
398 fi
399 if test "x$TS" = xt ; then
400 command="$command -ts"
401 fi
402 if test "x$PAPIS" = xt ; then
403 command="$command -papis"
404 else
405 if test "x$PCLS" = xt ; then
406 command="$command -pcls"
407 fi
408 fi
409 printf 'genmake ... '
410 eval $command > genmake.tr_log 2>&1
411 RETVAL=$?
412 # Reduce the size of the testing emails!
413 head -100 Makefile > $CDIR/Makefile_head
414 if test "x$RETVAL" != x0 ; then
415 tail genmake.tr_log
416 echo "genmakemodel: genmake failed"
417 cp genmake.log genmake_* genmake.tr_log $CDIR
418 return 1
419 else
420 echo "successful"
421 fi
422 )
423 fi
424 }
425
426 makeclean()
427 {
428 # makeclean directory
429 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
430 if test "x$NOCLEAN" = xt ; then
431 echo "make Clean skipped!"
432 else
433 (
434 cd $1;
435 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
436 if test -r Makefile ; then
437 printf 'clean build-dir: make Clean ... '
438 $MAKE Clean >> make.tr_log 2>&1
439 RETVAL=$?
440 if test "x$RETVAL" != x0 ; then
441 tail make.tr_log
442 echo "makeclean: \"make Clean\" failed"
443 cp make.tr_log genmake.log genmake.tr_log $CDIR
444 return 1
445 fi
446 echo successful
447 else
448 echo ''
449 fi
450 exit 0
451 )
452 fi
453 }
454
455 run_clean()
456 {
457 # run_clean directory
458 if test "x$NOCLEAN" = xt ; then
459 echo "run_clean skipped!"
460 else
461 (
462 cd $1;
463 printf 'clean run-dir ... '
464 # part of what is done after "make clean" when doing "make CLEAN"
465 find . -name "*.meta" -exec rm {} \;
466 find . -name "*.data" -exec rm {} \;
467 find . -name "fort.*" -exec rm {} \;
468 find . -type l -exec rm {} \;
469 #- should remove executable only if sym-link (alredy done above)
470 rm -f $RUNLOG *.txt STD* w2_tile_topology.????.log *diagnostics.log datetime
471 rm -rf mnc_test_*
472 rm -f *_MIT_CE_000.opt0000 costfunction*0000
473 rm -f oad_cp.000.[0-9][0-9][0-9][0-9][0-9]
474 echo successful
475 exit 0
476 )
477 fi
478 }
479
480 makedependmodel()
481 {
482 # makedependmodel directory
483 if test "x$NODEPEND" = xt ; then
484 echo "make depend skipped!"
485 else
486 (
487 cd $1;
488 printf 'make depend ... '
489 $MAKE depend >> make.tr_log 2>&1
490 RETVAL=$?
491 if test "x$RETVAL" != x0 ; then
492 tail make.tr_log
493 echo "makedependmodel: make depend failed"
494 cp make.tr_log genmake.log genmake.tr_log $CDIR
495 return 1
496 else
497 echo successful
498 fi
499 )
500 fi
501 }
502
503 makemodel()
504 {
505 # makemodel directory
506 (
507 mk_fail=0
508 if test "x$NOMAKE" = xt ; then
509 cd $1;
510 if test -x $EXECUTABLE ; then
511 echo "make skipped!"
512 else
513 echo "no executable!"
514 mk_fail=3
515 fi
516 else
517 cd $1;
518 if test -r Makefile ; then
519 printf 'make ... '
520 if test "x$REPLMAKE" = x ; then
521 $MAKE $TARG >> make.tr_log 2>&1
522 else
523 $REPLMAKE $TARG >> make.tr_log 2>&1
524 fi
525 RETVAL=$?
526 if test "x$RETVAL" != x0 ; then
527 tail make.tr_log
528 echo failed
529 cp genmake.log genmake.tr_log $CDIR
530 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
531 rm -f $EXECUTABLE
532 mk_fail=1
533 else
534 echo successful
535 fi
536 else
537 echo "no Makefile !"
538 mk_fail=2
539 fi
540 fi
541 if test $KIND = 1 -a -f taf_ftl.log ; then
542 head -1 taf_ftl.log >> $CDIR"/summary.txt"
543 fi
544 if test $KIND = 2 -a -f taf_ad.log ; then
545 head -1 taf_ad.log >> $CDIR"/summary.txt"
546 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
547 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
548 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
549 >> $CDIR"/summary.txt"
550 fi
551 if test $mk_fail != 0 ; then return $mk_fail ; fi
552 )
553 }
554
555 mk_mpi_size()
556 {
557 # mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
558 #
559 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
560 # for an MPI build with no more than proc_Nb processors ;
561 # ensure that enough tiles per proc (nSx,nSy) remain for the given
562 # number of threads (nTx,nTy) ;
563 # return the effective number of processors.
564
565 inp=$1
566 out=$2
567 np=$3
568 tx=$4
569 ty=$5
570 tmp=TTT.$$
571
572 # dirX : select with direction to favor in MPI process repartition
573 # dirX=1 : prefer to put more proc in X direction
574 # dirX=0 : prefer to put more proc in Y direction
575 dirX=0
576
577 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
578 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
579 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
580 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
581
582 #- for each direction, assume # of threads is a multiple of total number of tiles
583 nx=$px
584 if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
585 nx=`expr $sx \* $px / $tx`
586 if [ $verbose -gt 1 ]; then
587 echo " change px from $px to $nx to accommodate $tx threads"
588 fi
589 fi
590 ny=$py
591 if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
592 ny=`expr $sy \* $py / $ty`
593 if [ $verbose -gt 1 ]; then
594 echo " change py from $py to $ny to accommodate $ty threads"
595 fi
596 fi
597 #- find the largest divisor of input_file proc Nb, but not larger than $np
598 pp=0
599 i=1
600 while [ $i -le $nx ] ; do
601 if [ `expr $nx % $i` -eq 0 ] ; then
602 j=1
603 while [ $j -le $ny ] ; do
604 if [ `expr $ny % $j` -eq 0 ] ; then
605 ij=`expr $i \* $j`
606 if [ $ij -gt $pp ] ; then
607 flag=1
608 elif [ $ij -eq $pp ] ; then
609 flag=$dirX
610 else
611 flag=0
612 fi
613 if test $flag = 1 ; then
614 if [ $ij -le $np ] ; then
615 ix=$i ; jy=$j ; pp=$ij
616 #echo " ix,jy= $ix,$jy"
617 fi
618 fi
619 fi
620 j=`expr $j + 1`
621 done
622 fi
623 i=`expr $i + 1`
624 done
625
626 #- create new SIZE.h type file:
627 sx=`expr $sx \* $px / $ix`
628 sy=`expr $sy \* $py / $jy`
629 if [ $verbose -gt 1 ]; then
630 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
631 fi
632 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
633 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
634 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
635 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
636 rm -f $tmp
637 return $pp
638 }
639
640 symlink_mpifiles()
641 {
642 # Put special links so that MPI specific files are used
643 # This MUST be invoked between makeclean and makelinks because
644 # the Makefile will link to non-mpi files by default
645
646 dir=$1
647 code_dir=$2
648 build_dir=$dir/$3
649
650 # These are files that should replace their counter-part when using -mpi
651 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
652
653 for ii in $MPI_FILES ; do
654 i=`echo $ii | sed 's:^\./::'`
655 name=`echo $i | sed 's:_mpi::'`
656 file="../$code_dir/$i"
657 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
658
659 # Is this an MPI run?
660 if test "x$MPI" = x0 ; then
661 # NO: We undo any _mpi symbolically linked files
662 if test -L $build_dir/$name ; then
663 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
664 RETVAL=$?
665 if test "x$RETVAL" = x0 ; then
666 if [ $verbose -gt 1 ]; then
667 echo " Un-linking $name from ../$code_dir" ; fi
668 rm -f $build_dir/$name
669 fi
670 fi
671 else
672 # YES: We symbolically link these files to the build
673 # dir so long as there is no real file in place
674 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
675 RETVAL=$?
676 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
677 if test "x$RETVAL" != x0 ; then
678 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
679 if test ! -r $build_dir/$name ; then
680 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
681 (cd $build_dir; ln -sf $file $name)
682 fi
683 fi
684 fi
685 done
686 }
687
688 linkdata()
689 {
690 # linkdata run_dir input_dir_1 input_dir_2 ...
691 #
692 # symbolically link data files to run directory
693 if test -d $1 ; then
694 (
695 cd $1 ; shift
696 echo 'linkdata from dirs:' $*
697 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
698 for xx in $inpMPI ; do
699 if test -r "../"$1"/"$xx ; then
700 # found 1 _mpi sfx file in 1rst input dir and it is readable
701 yy=`echo $xx | sed 's:\.mpi$::'`
702 if test "x$MPI" = "x0" ; then
703 # not mpi test: remove symbolic link
704 if test -h $yy ; then rm -f $yy ; fi
705 else
706 # mpi test: remove symbolic link & link .mpi sfx file
707 if test -h $yy ; then rm -f $yy ; fi
708 if test ! -r $yy ; then
709 ln -sf "../"$1"/"$xx $yy ;
710 printf " $xx" 1>&2
711 fi
712 fi
713 fi
714 done
715 if test -r "../"$1"/eedata.mth" ; then
716 # found eedata.mth in 1rst input dir and it is readable
717 if test "x$MULTI_THREAD" = "xt" ; then
718 # multi-threaded test: remove symbolic link & link eedata.mth
719 if test -h eedata ; then rm -f eedata ; fi
720 if test ! -r eedata ; then
721 ln -sf "../"$1"/eedata.mth" eedata ;
722 printf ' eedata.mth' 1>&2
723 fi
724 else
725 # not multi-threaded test: remove eedata symbolic link
726 if test -h eedata ; then rm -f eedata ; fi
727 fi
728 fi
729 prevDir='NONE'
730 for ldir in $* ; do
731 if test -d "../"$ldir -a $ldir != $prevDir ; then
732 printf " ldir=${ldir}:" 1>&2
733 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
734 for i in $files ; do
735 if test ! -d "../"$ldir/$i ; then
736 if test ! -r $i ; then
737 printf ' '$i 1>&2
738 ln -sf "../"$ldir"/"$i $i
739 fi
740 fi
741 done
742 printf ' ;' 1>&2
743 if test -x "../"$ldir"/"prepare_run ; then
744 "../"$ldir"/"prepare_run 1>&2
745 else
746 echo '' 1>&2
747 fi
748 fi
749 prevDir=$ldir
750 done
751 )
752 fi
753 }
754
755 runmodel()
756 {
757 # runmodel directory
758 #
759 # runs $COMMAND in "directory"
760 # (where "$COMMAND" is relative to "directory")
761 (
762 cd $1
763 printf 'runmodel in %s ... ' $1
764 if test "x$MPI" != x0 ; then
765 #- adjust the MPI run command with the right number of Procs
766 #echo '' ; echo " COMMAND='$COMMAND'"
767 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
768 if test "x$MPI_MFILE" != x ; then
769 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
770 fi
771 #echo " COMMAND='$COMMAND'"
772 fi
773 if test -L $EXECUTABLE ; then
774 if test -x "../"$builddir"/"$EXECUTABLE ; then
775 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
776 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
777 else rm -f $EXECUTABLE
778 fi
779 fi
780 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
781 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
782 ln -sf "../"$builddir"/"$EXECUTABLE .
783 fi
784 if test ! -x $EXECUTABLE ; then
785 rm -f $RUNLOG ; touch $RUNLOG
786 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
787 echo " no executable:" $EXECUTABLE >> $RUNLOG
788 RETVAL=8
789 ENDVAL=-1
790 else
791 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
792 # output do not exist or is older than executable:
793 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
794 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
795 ( eval $COMMAND ) >> $RUNLOG 2>&1
796 RETVAL=$?
797 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
798 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
799 find . -name "*.meta" -exec rm {} \;
800 find . -name "*.data" -exec rm {} \;
801 rm -rf mnc_test_*
802 fi
803 else
804 RETVAL=0
805 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
806 touch $RUNLOG
807 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
808 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
809 fi
810 fi
811 rm -f run.log_tmp
812 #- in all cases where OutputFile exists, report SIZE and time
813 if test -f $OUTPUTFILE ; then
814 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
815 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
816 grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
817 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
818 fi
819 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
820 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
821 echo successful
822 printf '=> output from running in %s :\n' $1 1>&2
823 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
824 return 0
825 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
826 #-- for some weird cases (run is finihed but with error code)
827 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
828 printf '=> output from running in %s :\n' $1 1>&2
829 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
830 return 0
831 else
832 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
833 printf '=> output from running in %s :\n' $1 1>&2
834 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
835 cp $RUNLOG $CDIR"/"$RUNLOG
836 return 1
837 fi
838 )
839 }
840
841 createcodelet()
842 {
843 # create codelet for comparing model output
844
845 printf "creating the comparison code (using CC=$CC)... "
846 cat > tr_cmpnum.c <<EOF
847 #include <stdio.h>
848 #include <math.h>
849 int main( int argc, char** argv ) {
850 int linnum,cmplin,best,lncnt;
851 double a,b,abave,relerr;
852 best = -22;
853 lncnt = 0;
854 while( 1 & ( (lncnt+=1) < 999 ) ) {
855 scanf("%d", &linnum);
856 if (linnum == -1) break;
857 scanf("%lf", &a); scanf("%lf", &b);
858 abave = 0.5*(fabs(a)+fabs(b));
859 if ( abave == abave ) {
860 if (abave > 0.0) {
861 relerr=fabs(a-b)/abave;
862 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
863 else { cmplin = -16 ; }
864 best = (best > cmplin) ? best : cmplin; }
865 else { cmplin = -22 ; }
866 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
867 }
868 else {
869 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
870 break; }
871 }
872 if (lncnt == 999) best=-29;
873 if (linnum != -1) best=-99;
874 printf("%d\n", -best);
875 return 0;
876 }
877 EOF
878 $CC -o tr_cmpnum tr_cmpnum.c -lm
879
880 if [ -x ./tr_cmpnum ]; then
881 echo "OK"
882 return 0
883 else
884 echo
885 echo "ERROR: failed to compile comparison code -- please specify"
886 echo " a C compiler using the CC environment variable."
887 exit 1
888 fi
889 }
890
891 formatresults()
892 {
893 # formatresults expt genmake depend make run results*
894
895 nm=$1
896 printf '%s %s %s %s' $2 $3 $4 $5
897 shift; shift; shift; shift; shift;
898 listPrt=$@
899 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
900 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
901 printf '%3s' $listPrt
902 # line below does not work on hp-ux_ia64 : do those substitutions later on
903 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
904
905 if [ $xx = '..' ]; then
906 printf ' N/O '
907 elif [ $xx = '--' ]; then
908 printf ' N/O '
909 elif [ $xx = 99 ]; then
910 printf ' N/O '
911 else
912 if [ $xx -ge $MATCH_CRIT ]; then
913 printf ' pass'
914 else
915 printf ' FAIL'
916 fi
917 fi
918 printf ' %s' $nm
919 printf '\n'
920
921 }
922
923 scandirs()
924 {
925 if [ $# -eq 1 ]; then
926 for arg in * ; do
927 #test -f $arg/$1 && echo $arg
928 test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
929 done
930 else
931 echo $*
932 fi
933 }
934
935
936 check_eedata()
937 {
938 # check_eedata eedata size.h
939 if [ $# -eq 2 ] ; then
940 if test -f $1 -a -f $2 ; then
941 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
942 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
943 if test "x$nx" = x ; then
944 rx=10
945 else
946 rx=`expr $sx % $nx`
947 fi
948 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
949 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
950 if test "x$ny" = x ; then
951 ry=20
952 else
953 ry=`expr $sy % $ny`
954 fi
955 echo `expr $rx + $ry`
956 else
957 echo '-1'
958 fi
959 elif [ $# -eq 1 ] ; then
960 if test -f $1 ; then
961 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
962 if test "x$nx" = x ; then nx=1 ; fi
963 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
964 if test "x$ny" = x ; then ny=1 ; fi
965 #echo $nx $ny
966 echo $nx
967 else
968 echo '-1'
969 fi
970 else
971 echo '-2'
972 fi
973
974 }
975
976 ###############################################################################
977
978
979 # Default properties
980 debug=0
981 verbose=1
982 NBLINES_MKLOG=16000
983
984 OptLev=1
985 GSL=f
986
987 CLEANUP=f
988 NORUN=f
989 QUICK=f
990 NOMAKE=f
991 NOGENMAKE=f
992 NOCLEAN=f
993 NODEPEND=f
994 POSTCLEAN=0
995
996 BASH=
997 OPTFILE=NONE
998 ADDRESSES=
999 TESTDIRS=
1000 SKIPDIRS=
1001 MPACKDIR="../tools/mpack-1.6"
1002 HAVE_MPACK=
1003 MPACK=
1004 COMMAND=
1005 MKDEPEND=
1006 if test "x$MAKE" = x ; then
1007 MAKE=make
1008 fi
1009 REPLMAKE=
1010 if test "x$CC" = x ; then
1011 CC=cc
1012 fi
1013 JOBS=
1014 TARG=
1015 MPI=0
1016 MPI_MFILE=
1017 MULTI_THREAD=f
1018 OUTDIR=
1019 DELDIR=
1020 USE_R4=
1021 EXTRFLG=
1022
1023 #- type of testing (KIND):
1024 # KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
1025 # KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
1026 KIND=0
1027
1028 # list of pTracers to check for monitor output
1029 PTRACERS_NUM="1 2 3 4 5"
1030
1031 MATCH_CRIT=10
1032
1033 printf "parsing options... "
1034
1035 ac_prev=
1036 for ac_option ; do
1037
1038 # If the previous option needs an argument, assign it.
1039 if test -n "$ac_prev"; then
1040 eval "$ac_prev=\$ac_option"
1041 ac_prev=
1042 continue
1043 fi
1044
1045 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1046
1047 case $ac_option in
1048
1049 -help | --help | -h | --h) usage ;;
1050
1051 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
1052 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1053
1054 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1055 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1056 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1057 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1058
1059 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1060 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1061 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1062 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1063
1064 -bash | --bash | -b | --b) ac_prev=BASH ;;
1065 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1066
1067 -command | --command | -c | --c) ac_prev=COMMAND ;;
1068 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1069
1070 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1071 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1072
1073 -make | --make | -m | --m) ac_prev=MAKE ;;
1074 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1075
1076 -repl_mk | --repl_mk ) ac_prev=REPLMAKE ;;
1077 -repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;;
1078
1079 -odir | --odir) ac_prev=OUTDIR ;;
1080 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1081
1082 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1083 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1084
1085 -match | --match ) ac_prev=MATCH_CRIT ;;
1086 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1087
1088 -j | --j) ac_prev=JOBS ;;
1089 -j=* | --j=*) JOBS=$ac_optarg ;;
1090
1091 -ef | --ef) ac_prev=EXTRFLG ;;
1092 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1093
1094 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1095
1096 -norun | --norun | -nr | --nr) NORUN=t ;;
1097 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1098 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1099 -quick | --quick | -q | --q) QUICK=t ;;
1100 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1101 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1102 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1103
1104 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1105 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1106
1107 -mpi | --mpi) MPI=2 ;;
1108 -MPI | --MPI) ac_prev=MPI ;;
1109 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1110
1111 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1112 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1113
1114 -mth) MULTI_THREAD=t ;;
1115
1116 -tlm) if test $KIND = 0 ; then KIND=1 ; else
1117 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1118 fi ;;
1119 -adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
1120 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1121 fi ;;
1122 -oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
1123 echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
1124 fi ;;
1125
1126 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1127 printf " ... " ;;
1128 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1129 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1130 -fast) OptLev=`expr $OptLev \* 2` ;;
1131 -devel) OptLev=0 ;;
1132 -gsl) GSL=t ;;
1133
1134 -verbose) verbose=2 ;;
1135 -debug) debug=1 ;;
1136 -quiet) verbose=0 ;;
1137
1138 -deldir | -dd) DELDIR=t ;;
1139
1140 -use_r4|-ur4) USE_R4=t ;;
1141
1142 -ts) TS=t;;
1143 -papis) PAPIS=t;;
1144 -pcls) PCL=t;;
1145
1146 -*) echo "Error: unrecognized option: "$ac_option
1147 usage ;;
1148 *) echo "Error: unrecognized argument: "$ac_option
1149 usage ;;
1150
1151 esac
1152
1153 done
1154
1155 if test "x$QUICK" = xt ; then
1156 NOGENMAKE=t
1157 NOCLEAN=t
1158 NODEPEND=t
1159 fi
1160
1161 #- check length of MPI machine file:
1162 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1163 if test -r $MPI_MFILE ; then
1164 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1165 if [ $nl -lt $MPI ] ; then
1166 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1167 usage
1168 fi
1169 if [ $verbose -gt 1 ]; then
1170 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1171 fi
1172 else
1173 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1174 usage
1175 fi
1176 fi
1177
1178 #- setting for forward or ADM testing
1179 if test $KIND = 1 ; then
1180 TARG=ftlall
1181 code_dir=code_ad
1182 inputdir=input_ad
1183 ref_outp="output_tlm.txt"
1184 EXECUTABLE="mitgcmuv_ftl"
1185 elif test $KIND = 2 ; then
1186 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1187 code_dir=code_ad
1188 inputdir=input_ad
1189 ref_outp="output_adm.txt"
1190 EXECUTABLE="mitgcmuv_ad"
1191 elif test $KIND = 4 ; then
1192 TARG=adAll
1193 code_dir=code_oad
1194 inputdir=input_oad
1195 ref_outp="output_oadm.txt"
1196 EXECUTABLE="mitgcmuv_ad"
1197 else
1198 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1199 code_dir=code
1200 inputdir=input
1201 ref_outp="output.txt"
1202 EXECUTABLE="mitgcmuv"
1203 fi
1204
1205 xx=`echo $TESTDIRS | awk '{print $1}'`
1206 if test "x$TESTDIRS" = x ; then
1207 LIST=`scandirs results/$ref_outp`
1208 elif test $xx = 'start_from' ; then
1209 xx=`echo $TESTDIRS | awk '{print $2}'`
1210 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1211 else
1212 #- expand group of experiments:
1213 LIST=" "
1214 for xx in $TESTDIRS
1215 do
1216 case $xx in
1217 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1218 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1219 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1220 ;;
1221 'tutorials')
1222 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1223 *) LIST=${LIST}" "$xx ;;
1224 esac
1225 done
1226 fi
1227 #echo 'LIST='${LIST}'<'
1228 #- skip dirs, remove duplicate and non-directory:
1229 TESTDIRS=" "
1230 count=0
1231 for xx in $LIST
1232 do
1233 yy=`echo $SKIPDIRS | grep -c $xx`
1234 if test $yy = 0 ; then
1235 if test -d $xx ; then
1236 yy=`echo $TESTDIRS | grep -c $xx`
1237 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1238 else count=1 ;
1239 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1240 fi
1241 else
1242 if test $count = 1 ; then echo -n ", \"$xx\""
1243 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1244 fi
1245 fi
1246 done
1247 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1248 #echo 'TESTDIRS='${TESTDIRS}'<'
1249
1250 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1251 OPTFILE=$MITGCM_OF
1252 fi
1253
1254 LOC_MFILE='tr_mpi_mfile'
1255 RUNLOG="run.tr_log"
1256 OUTPUTFILE=$ref_outp
1257 if test "x$COMMAND" = x ; then
1258 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1259 fi
1260 if test "x$MPI" != x0 ; then
1261 OUTPUTFILE="STDOUT.0000"
1262 fi
1263
1264 echo "OK (COMMAND= $COMMAND )"
1265
1266 # set the Default List of output variables to be checked:
1267 # (use default or load experiment-specific list from file "tr_checklist")
1268 # content : 1rst = main variable used to decide if it pass or FAIL
1269 # others = number of matching digits to be printed in summary.txt
1270 if test $KIND = 1 ; then
1271 DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
1272 EMPTY_RESULTS='.. .. ..'
1273 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1274 elif test $KIND = 2 -o $KIND = 4 ; then
1275 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1276 EMPTY_RESULTS='.. .. ..'
1277 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1278 else
1279 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1280 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1281 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1282 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1283 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1284 fi
1285
1286 # create the FORTRAN comparison code
1287 if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
1288 echo "skipping comparison code build"
1289 else
1290 createcodelet
1291 fi
1292
1293 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1294 if test "x$ADDRESSES" = x ; then
1295 echo "skipping mpack build"
1296 else
1297 build_mpack
1298 fi
1299
1300 # Create a uniquely named directory to store results
1301 CMDLINE=$0
1302 for xx in "$@" ; do nw=`echo $xx | wc -w`
1303 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
1304 nb=`echo $xx | grep -c '='`
1305 if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
1306 else yy=`echo "$xx'" | sed "s/=/='/"` ;
1307 CMDLINE="$CMDLINE $yy" ; fi
1308 fi
1309 done
1310 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1311 MACH=`hostname`
1312 UNAMEA=`uname -a`
1313 DATE=`date +%Y%m%d`
1314 BASE="tr_"$MACH"_"$DATE"_"
1315 if test "x$OUTDIR" != x ; then
1316 BASE="tr_"$OUTDIR"_"$DATE"_"
1317 else
1318 short_name=`hostname | sed 's/\..*$//'`
1319 BASE="tr_"$short_name"_"$DATE"_"
1320 fi
1321 DNUM=0
1322 DRESULTS="$BASE$DNUM"
1323 while test -e $DRESULTS ; do
1324 DNUM=$(( $DNUM + 1 ))
1325 DRESULTS="$BASE$DNUM"
1326 done
1327 mkdir $DRESULTS
1328 RETVAL=$?
1329 if test "x$RETVAL" != x0 ; then
1330 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1331 exit 1
1332 fi
1333 SUMMARY="$DRESULTS/summary.txt"
1334 start_date=`date`
1335 echo $start_date > $SUMMARY
1336 echo 'run:' $CMDLINE >> $SUMMARY
1337 echo 'on :' $UNAMEA >> $SUMMARY
1338
1339 of_path=
1340 if test "x$OPTFILE" != xNONE ; then
1341 if test -r $OPTFILE ; then
1342 # get the path
1343 path=${OPTFILE%/*}
1344 if test "x$path" = x ; then
1345 of_path=`pwd`
1346 else
1347 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1348 fi
1349 file=${OPTFILE##*/}
1350 OPTFILE=$of_path/$file
1351 cp $OPTFILE $DRESULTS
1352 echo >> $SUMMARY
1353 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1354 else
1355 echo | tee -a $SUMMARY
1356 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
1357 exit 1
1358 fi
1359 else
1360 echo >> $SUMMARY
1361 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1362 #-note: to be filled later after 1rst run
1363 fi
1364 echo
1365 echo >> $SUMMARY
1366 if test $KIND = 0 ; then
1367 line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
1368 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1369 line_1="G D M c m s m s m s m s"
1370 line_2="e p a R g m m e . m m e . m m e . m m e ."
1371 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1372 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1373 for ii in $PTRACERS_NUM ; do
1374 line_0="$line_0 --PTR 0"$ii"--"
1375 line_1="$line_1 m s"
1376 line_2="$line_2 m m e ."
1377 line_3="$line_3 i a a d"
1378 line_4="$line_4 n x n ."
1379 done
1380 else
1381 line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
1382 if test $KIND = 1 ; then
1383 #echo "TANGLIN=true" >> $SUMMARY
1384 echo "TangLin generated by TAF" >> $SUMMARY
1385 elif test $KIND = 3 ; then
1386 echo "TangLin generated by OpenAD" >> $SUMMARY
1387 elif test $KIND = 2 ; then
1388 #echo "ADJOINT=true" >> $SUMMARY
1389 echo "Adjoint generated by TAF" >> $SUMMARY
1390 else
1391 echo "Adjoint generated by OpenAD" >> $SUMMARY
1392 fi
1393 if test $KIND = 1 -o $KIND = 3 ; then
1394 line_1="G D M C T F"
1395 line_2="e p a R o L D"
1396 else
1397 line_1="G D M C A F"
1398 line_2="e p a R o d D"
1399 fi
1400 line_3="n n k u s G G"
1401 line_4="2 d e n t r r"
1402 echo >> $SUMMARY
1403 fi
1404 if test "x$CLEANUP" != xt ; then
1405 echo "$line_0" | tee -a $SUMMARY
1406 echo "$line_1" | tee -a $SUMMARY
1407 echo "$line_2" | tee -a $SUMMARY
1408 echo "$line_3" | tee -a $SUMMARY
1409 echo "$line_4" | tee -a $SUMMARY
1410 echo "" | tee -a $SUMMARY
1411 fi
1412 echo "-------------------------------------------------------------------------------"
1413
1414 # ...and each test directory...
1415 for dir in $TESTDIRS ; do
1416
1417 # set builddir & rundir:
1418 builddir="build"
1419 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1420 rundir="run"
1421 pfxdir="tr_$rundir"
1422 if test ! -d $dir/$rundir ; then
1423 rundir=$builddir
1424 fi
1425 CODE_DIR=$dir/$code_dir
1426 BUILD_DIR=$dir/$builddir
1427
1428 # Cleanup only!
1429 if test "x$CLEANUP" = xt ; then
1430 echo -n ' --- dir:' $BUILD_DIR ': '
1431 makeclean $BUILD_DIR
1432 ( cd $BUILD_DIR
1433 rm -f $EXECUTABLE *.bak
1434 rm -f genmake_state genmake_*optfile genmake.log
1435 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1436 )
1437 if test -d $dir/$rundir/CVS ; then
1438 echo -n ' --- dir:' $dir/$rundir ': '
1439 run_clean $dir/$rundir
1440 fi
1441 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1442 ttd=`echo $trdir | wc -w`
1443 if test $ttd != 0 ; then
1444 echo ' --- rm dir:' $trdir
1445 ( cd $dir ; rm -rf $trdir )
1446 fi
1447 continue
1448 fi
1449
1450 # Verify that the testdir exists and contains previous
1451 # results in the correct location--or skip this directory!
1452 fout=$dir"/results/"$ref_outp
1453 #if test ! -r $fout ; then
1454 if test ! -r $fout -a ! -r ${fout}.gz ; then
1455 echo "can't read \"$fout\" -- skipping $dir"
1456 continue
1457 fi
1458
1459 # Check for specific files for particular type of run
1460
1461 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1462 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1463 continue
1464 fi
1465 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1466 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1467 continue
1468 fi
1469
1470 if test "x$MPI" != "x0" ; then
1471 ntx=1 ; nty=1
1472 if test "x$MULTI_THREAD" = "xt" ; then
1473 ff=$dir"/input/eedata.mth"
1474 ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
1475 nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
1476 if test "x$ntx" = x ; then ntx=1 ; fi
1477 if test "x$nty" = x ; then nty=1 ; fi
1478 fi
1479 #- create new SIZE.h with no more than '$MPI' Procs
1480 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
1481 LOC_NPROC=$?
1482 ( cd $BUILD_DIR
1483 if test -r SIZE.h.mpi ; then
1484 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1485 else RETVAL=1
1486 fi
1487 if test "x$RETVAL" = x0 ; then
1488 rm -f tr_size.mpi
1489 else
1490 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1491 fi
1492 )
1493 if test "x$MPI_MFILE" != x ; then
1494 #- create new MPI machine-file with the right number of Procs
1495 rm -f $LOC_MFILE
1496 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1497 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1498 if [ $nl -lt $LOC_NPROC ] ; then
1499 rm -f $LOC_MFILE
1500 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1501 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1502 fi
1503 if [ $verbose -gt 1 ]; then
1504 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1505 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1506 fi
1507 fi
1508 if test "x$MULTI_THREAD" = "xt" ; then
1509 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1510 if test $retv != 0 ; then
1511 echo "input/eedata.mth tiling misfit -- skipping $dir"
1512 continue
1513 fi
1514 fi
1515 fi
1516
1517 # Check whether there are "extra runs" for this testdir
1518 extra_runs=
1519 if test "x$NORUN" = xf ; then
1520 ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
1521 fi
1522 #echo "ex_run_dirs='$ex_run_dirs'"
1523 for exd in $ex_run_dirs ; do
1524 name=`echo $exd | sed -e "s/$inputdir\.//"`
1525 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1526 outf="$dir/results/$refExOut"
1527 if test -r $outf -o -r ${outf}.gz ; then
1528 if test "x$MULTI_THREAD" = "xt" ; then
1529 if test -r $dir"/"$exd"/eedata.mth" ; then
1530 if test "x$MPI" = "x0" ; then
1531 extra_runs="$extra_runs $name"
1532 else
1533 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1534 if test $retv = 0 ; then
1535 extra_runs="$extra_runs $name"
1536 else
1537 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1538 fi
1539 fi
1540 #else echo $dir"/"$exd"/eedata.mth: not found"
1541 fi
1542 else
1543 extra_runs="$extra_runs $name"
1544 fi
1545 fi
1546 done
1547
1548 echo
1549 if test "x$extra_runs" = "x" ; then
1550 echo "Experiment: $dir"
1551 else
1552 echo "Experiment: $dir ; extra_runs=$extra_runs"
1553 fi
1554 echo
1555 unset genmake makedepend make run
1556 results=$EMPTY_RESULTS
1557
1558 # Create an output dir & summary.txt file for each tested experiment (tdir)
1559 locDIR=$DRESULTS"/"$dir
1560 mkdir $locDIR
1561 #- report to this experiment local summary file ---
1562 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1563 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1564 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1565 CDIR=`pwd`"/$locDIR"
1566
1567 if test "x$NORUN" = xt ; then
1568 run=N
1569 genmakemodel $dir/$builddir && genmake=Y \
1570 && makeclean $dir/$builddir \
1571 && symlink_mpifiles $dir $code_dir $builddir \
1572 && makedependmodel $dir/$builddir && makedepend=Y \
1573 && makemodel $dir/$builddir && make=Y
1574 else
1575 genmakemodel $dir/$builddir && genmake=Y \
1576 && makeclean $dir/$builddir \
1577 && symlink_mpifiles $dir $code_dir $builddir \
1578 && makedependmodel $dir/$builddir && makedepend=Y \
1579 && makemodel $dir/$builddir && make=Y \
1580 && run_clean $dir/$rundir \
1581 && linkdata $dir/$rundir $inputdir \
1582 && runmodel $dir/$rundir && run=Y \
1583 && results=`testoutput_run $dir $rundir $ref_outp`
1584 fi
1585 #echo "results='$results'"
1586
1587 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1588 echo 1>&2
1589 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1590 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1591
1592 for ex in $extra_runs ; do
1593 unset run
1594 results=$EMPTY_RESULTS
1595 # reference output file
1596 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1597 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1598 locDIR=$DRESULTS"/"$dir"."$ex
1599 mkdir $locDIR
1600 #- report to this experiment local summary file ---
1601 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1602 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1603 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1604 CDIR=`pwd`"/$locDIR"
1605 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1606 run_clean $dir/$pfxdir.$ex
1607 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1608 runmodel $dir/$pfxdir.$ex && run=Y \
1609 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1610 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1611 fres="$fres.$ex"
1612 echo 1>&2
1613 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1614 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1615 if test "x$POSTCLEAN" = x2 ; then
1616 run_clean $dir/$pfxdir.$ex
1617 fi
1618 done
1619
1620 if test ! -f $DRESULTS"/"genmake_state ; then
1621 if test -f $dir/$builddir/Makefile ; then
1622 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1623 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1624 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1625 echo " $mkOpt" >> $DRESULTS/genmake_state
1626 if test "x$OPTFILE" = xNONE ; then
1627 eval $mkOpt
1628 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1629 $SUMMARY > tmp.tr_log
1630 RETVAL=$?
1631 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1632 cp tmp.tr_log $SUMMARY
1633 else rm -f tmp.tr_log
1634 fi
1635 fi
1636 gmkLog=$dir/$builddir/genmake.log
1637 if test -r $gmkLog ; then
1638 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1639 RETVAL=$?
1640 if test "x$RETVAL" = x0 ; then
1641 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1642 echo "extract compiler version:" >> $DRESULTS/genmake_state
1643 sed -n '/Get compiler version/,/<-- compiler version/p' \
1644 $gmkLog | grep -v '^... compiler version ' > tmp.tr_log
1645 sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
1646 sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
1647 >> $DRESULTS/genmake_state
1648 rm -f tmp.tr_log
1649 fi
1650 echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
1651 echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state
1652 sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state
1653 sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state
1654 fi
1655 fi
1656 fi
1657 #postclean $dir/$builddir
1658 if test "x$POSTCLEAN" = x2 ; then
1659 makeclean $dir/$builddir \
1660 && run_clean $dir/$rundir
1661 fi
1662 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1663
1664 echo "-------------------------------------------------------------------------------"
1665
1666 done
1667
1668 printf "Start time: " >> $SUMMARY
1669 echo "$start_date" >> $SUMMARY
1670 printf "End time: " >> $SUMMARY
1671 date >> $SUMMARY
1672
1673 # If addresses were supplied and mpack built successfully, then try
1674 # to send email using mpack.
1675 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1676 echo "No results email was sent."
1677 else
1678 if test "x$HAVE_MPACK" = xt ; then
1679 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1680 && gzip $DRESULTS".tar" \
1681 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1682 RETVAL=$?
1683 if test "x$RETVAL" != x0 ; then
1684 echo
1685 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1686 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1687 echo " summary of results from the directory \"$DRESULTS\"."
1688 echo
1689 else
1690 echo
1691 echo "An email containing results was sent to the following addresses:"
1692 echo " \"$ADDRESSES\""
1693 echo
1694 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1695 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1696 fi
1697 fi
1698 fi
1699
1700 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1701 rm -f tr_cmpnum.c tr_cmpnum
1702 fi
1703
1704 if test "x$CLEANUP" != xt ; then
1705 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1706 if test -e tr_out.txt ; then
1707 mv tr_out.txt tr_out.txt.old
1708 fi
1709 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1710 fi
1711
1712 if test "x$DELDIR" = xt ; then
1713 rm -rf $DRESULTS
1714 fi
1715 echo "======== End of testreport execution ========"

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