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Revision 1.163 - (show annotations) (download)
Wed May 18 22:03:57 2011 UTC (12 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint62z, checkpoint62y
Changes since 1.162: +4 -2 lines
failed compilation: limit Nb of lines of make log-file to be saved in
 output directory (now in file "make.tr_log_tail").

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.162 2011/05/11 01:51:07 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
19 echo " (DEF=\"-ieee\")"
20 echo " (-gsl) compile with \"-gsl\" flag"
21 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
22 echo " (-optfile|-of) STRING list of optfiles to use"
23 echo " (-addr|-a) STRING list of email recipients"
24 echo " (DEF=\"\" no email is sent)"
25 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
26 echo " (DEF=\"../tools/mpack-1.6\")"
27 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
28 echo " (recognized groups: basic, tutorials)"
29 echo " (DEF=\"\" which test all)"
30 echo " (if list= 'start_from THIS_EXP' then"
31 echo " test THIS_EXP + all the following)"
32 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
33 echo " (DEF=\"\" which test all)"
34 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
35 echo " Bourne-compatible \"sh\" shell"
36 echo " (DEF=\"\" for \"bash\")"
37 echo " (-adm|-ad) perform an adjoint run"
38 echo " (-oad) perform an OpenAD adjoint run"
39 echo " (-command|-c) STRING command to run"
40 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
41 echo " (-make|-m) STRING command to use for \"make\""
42 echo " (DEF=\"make\")"
43 echo " (-odir) STRING used to build output directory name"
44 echo " (DEF=\"hostname\")"
45 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
46 # echo " (DEF=\"1 2 3 4 5\")"
47 echo " (-match) NUMBER Matching Criteria (number of digits)"
48 echo " (DEF=\"$MATCH_CRIT\")"
49 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
50 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
51 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
52 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
53 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
54 echo " (-nogenmake|-ng) skip the genmake stage"
55 echo " (-noclean|-nc) skip the \"make clean\" stage"
56 echo " (-nodepend|-nd) skip the \"make depend\" stage"
57 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
58 echo " (-deloutp|-do) delete output files after successful run"
59 echo " (-deldir|-dd) on success, delete the output directory"
60 echo " (-ts) provide timing information per timestep"
61 echo " (-papis) provide MFlop/s per timestep using PAPI"
62 echo " (-pcls) provide MFlop/s per timestep using PCL"
63 echo
64 echo "and where STRING can be a whitespace-delimited list"
65 echo "such as:"
66 echo
67 echo " -t 'exp0 exp2 exp3' "
68 echo " -addr='abc@123.com testing@home.org'"
69 echo
70 echo "provided that the expression is properly quoted within the current"
71 echo "shell (note the use of single quotes to protect white space)."
72 echo
73 exit 1
74 }
75
76 # build the mpack utility
77 build_mpack()
78 {
79 printf "building the mpack utility... "
80 MPACK="$MPACKDIR/mpack"
81 if test ! -x $MPACK ; then
82 if test ! -d $MPACKDIR ; then
83 echo
84 echo "Error: can't find \"$MPACKDIR\""
85 echo " are you sure this program is being run in the correct "
86 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
87 echo
88 HAVE_MPACK=f
89 fi
90 if test "x$CC" = x ; then
91 export CC=cc
92 fi
93 printf "building mpack (using CC=$CC)... "
94 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
95 RETVAL=$?
96 if test "x$RETVAL" != x0 ; then
97 echo
98 echo "Error building the mpack tools at: $MPACK_DIR"
99 echo
100 HAVE_MPACK=f
101 else
102 rm -f tr_build_mpack.out
103 HAVE_MPACK=t
104 echo "done"
105 fi
106 else
107 HAVE_MPACK=t
108 echo "already exist"
109 fi
110 }
111
112 testoutput_var()
113 {
114 # testoutput_var dir s1 label subdir reference_output
115 #
116 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
117 # with same output from reference file $dir/results/$reference_output
118 # using search strings s1 and text label
119
120 if [ $debug -gt 0 ]; then
121 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
122 fi
123 if [ -r $1/$4/$OUTPUTFILE ]; then
124 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
125 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
126 if [ $lncntA -lt 2 ]; then
127 if [ $verbose -gt 0 ]; then
128 echo Not enough lines of output when searching for "$2" 1>&2
129 fi
130 return 99
131 fi
132 else
133 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
134 return 99
135 fi
136 if [ $debug -gt 0 ]; then
137 echo testoutput_var: grep "$2" $1/results/$5 1>&2
138 fi
139 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
140 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
141 if [ $lncntB -lt 2 ]; then
142 if [ $verbose -gt 0 ]; then
143 echo Not enough lines of output when searching for "$2" 1>&2
144 fi
145 return 99
146 fi
147 if [ $lncntA -ne $lncntB ]; then
148 if [ $verbose -gt 0 ]; then
149 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
150 fi
151 return 99
152 fi
153 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
154 if [ $has_nan -gt 0 ] ; then
155 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
156 return 99
157 fi
158 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
159 if [ $has_inf -gt 0 ] ; then
160 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
161 return 99
162 fi
163 if [ $debug -gt 0 ]; then
164 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
165 fi
166 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
167 if [ $debug -gt 0 ]; then
168 echo testoutput_var: compare_lines 1>&2
169 fi
170 if [ $verbose -gt 1 ]; then
171 cat tmp3.txt 1>&2
172 fi
173 echo "-1" >> tmp3.txt
174 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
175 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
176 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
177 if [ $digits_of_similarity -eq 99 ]; then
178 if [ $verbose -gt 0 ]; then
179 echo testoutput_var: No comparison was available for \"$3\" 1>&2
180 fi
181 digits_of_similarity=99
182 else
183 if [ $verbose -gt 0 ]; then
184 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
185 fi
186 fi
187 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
188
189 return $digits_of_similarity
190 }
191
192 testoutput_run()
193 {
194 # testoutput_run directory subdir reference_output
195 #
196 # test output from 1 run in "directory"
197 # --> same processing for adjoint & forward test
198 # default list of output variables to be checked:
199 # 1rst : main variable used to decide if it pass or FAIL
200 # others : number of matching digits to be printed in summary.txt
201 listChk=$DEF_CHECK_LIST
202 # load experiment-specific list from file "tr_checklist" (if it exist)
203 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
204 sVar=`echo $listChk | awk '{print $1}'`
205 # remove 1rst var and expand the list: + => min max mean s.d
206 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
207 | sed 's/+//g' | sed "s/^$sVar//"`
208 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
209 # check for ptracer output in reference_output file :
210 outpref=$1/results/$3
211 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
212 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
213 for ii in $PTRACERS_NUM ; do
214 ptrfound=0
215 for jj in $ptr_mon ; do
216 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
217 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
218 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
219 done
220 if test $ptrfound = '1' ; then
221 eval "HAVE_PTR0"$ii"=t"
222 else
223 eval "HAVE_PTR0"$ii"=f"
224 if test "x$ADM" = x -a "x$OADM" = x; then
225 # remove this ptr from the list of output variable to check
226 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
227 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
228 fi
229 fi
230 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
231 done
232 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
233 if test $tst != 1 ; then
234 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
235 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
236 echo "==> WARNING: in checked list:" $listVar 1>&2
237 #- put it back once:
238 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
239 fi
240 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
241 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
242 #---
243 allargs=""
244 for xx in $listVar
245 do
246 case $xx in
247 'PS') if [ $debug -gt 0 ]
248 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
249 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
250 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
251 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
252 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
253 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
254 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
255 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
256 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
257 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
258 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
259 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
260 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
261 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
262 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
263 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
264 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
265 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
266 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
267 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
268 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
269 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
270 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
271 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
272 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
273 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
274 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
275 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
276 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
277 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
278 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
279 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
280 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
281 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
282 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
283 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
284 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
285 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
286 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
287 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
288 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
289 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
290 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
291 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
292 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
293 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
294 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
295 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
296 esac
297 if test $xx = $sVar
298 then allargs="$allargs > $yy <"
299 else allargs="$allargs $yy"
300 fi
301 done
302
303 nbVar=`echo $listVar | awk '{print NF}'`
304 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
305 #-- fill line (up to standard length) with dot:
306 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
307 echo $allargs $adNul
308 else
309 echo $allargs
310 fi
311 # <-- same processing for adjoint & forward test
312 }
313
314 genmakemodel()
315 {
316 # genmakemodel directory
317 if test "x$NOGENMAKE" = xt ; then
318 echo "genmake skipped!"
319 else
320 if test "x$BASH" = x ; then
321 GENMAKE2="../../../tools/genmake2"
322 else
323 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
324 fi
325 (
326 cd $1;
327 command="$GENMAKE2 -ds -m $MAKE"
328 if test "x$MKDEPEND" != x ; then
329 command="$command -makedepend=$MKDEPEND"
330 fi
331 if test "x$ADM" = xt ; then
332 command="$command --mods=../code_ad"
333 elif test "x$OADM" = xt ; then
334 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
335 else
336 command="$command -mods=../code"
337 fi
338 if test "x$OPTFILE" != xNONE ; then
339 command="$command -optfile=$OPTFILE"
340 fi
341 if test "x$IEEE" != x ; then
342 command="$command -ieee"
343 fi
344 if test "x$GSL" = xt ; then
345 command="$command -gsl"
346 fi
347 if test "x$MPI" != x0 ; then
348 command="$command -mpi"
349 fi
350 if test "x$MULTI_THREAD" = xt ; then
351 #- run multi-threaded using OpenMP:
352 command="$command -omp"
353 fi
354 if test "x$USE_R4" = xt ; then
355 command="$command -use_r4"
356 fi
357 if test "x$TS" = xt ; then
358 command="$command -ts"
359 fi
360 if test "x$PAPIS" = xt ; then
361 command="$command -papis"
362 else
363 if test "x$PCLS" = xt ; then
364 command="$command -pcls"
365 fi
366 fi
367 printf 'genmake ... '
368 eval $command > genmake.tr_log 2>&1
369 RETVAL=$?
370 # Reduce the size of the testing emails!
371 head -100 Makefile > $CDIR/Makefile_head
372 if test "x$RETVAL" != x0 ; then
373 tail genmake.tr_log
374 echo "genmakemodel: genmake failed"
375 cp genmake.log genmake_* genmake.tr_log $CDIR
376 return 1
377 else
378 echo "successful"
379 fi
380 )
381 fi
382 }
383
384 makeclean()
385 {
386 # makeclean directory
387 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
388 if test "x$NOCLEAN" = xt ; then
389 echo "make Clean skipped!"
390 else
391 (
392 cd $1;
393 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
394 if test -r Makefile ; then
395 printf 'clean build-dir: make Clean ... '
396 $MAKE Clean >> make.tr_log 2>&1
397 RETVAL=$?
398 if test "x$RETVAL" != x0 ; then
399 tail make.tr_log
400 echo "makeclean: \"make Clean\" failed"
401 cp make.tr_log genmake.log genmake.tr_log $CDIR
402 return 1
403 fi
404 echo successful
405 else
406 echo ''
407 fi
408 exit 0
409 )
410 fi
411 }
412
413 run_clean()
414 {
415 # run_clean directory
416 if test "x$NOCLEAN" = xt ; then
417 echo "run_clean skipped!"
418 else
419 (
420 cd $1;
421 printf 'clean run-dir ... '
422 # part of what is done after "make clean" when doing "make CLEAN"
423 find . -name "*.meta" -exec rm {} \;
424 find . -name "*.data" -exec rm {} \;
425 find . -name "fort.*" -exec rm {} \;
426 find . -type l -exec rm {} \;
427 #- should remove executable only if sym-link (alredy done above)
428 rm -f $RUNLOG *.txt STD* *diagnostics.log datetime
429 rm -rf mnc_test_*
430 rm -f *_MIT_CE_000.opt0000 costfunction*0000
431 echo successful
432 exit 0
433 )
434 fi
435 }
436
437 makedependmodel()
438 {
439 # makedependmodel directory
440 if test "x$NODEPEND" = xt ; then
441 echo "make depend skipped!"
442 else
443 (
444 cd $1;
445 printf 'make depend ... '
446 $MAKE depend >> make.tr_log 2>&1
447 RETVAL=$?
448 if test "x$RETVAL" != x0 ; then
449 tail make.tr_log
450 echo "makedependmodel: make depend failed"
451 cp make.tr_log genmake.log genmake.tr_log $CDIR
452 return 1
453 else
454 echo successful
455 fi
456 )
457 fi
458 }
459
460 makemodel()
461 {
462 # makemodel directory
463 (
464 mk_fail=0
465 if test "x$NOMAKE" = xt ; then
466 cd $1;
467 if test -x $EXECUTABLE ; then
468 echo "make skipped!"
469 else
470 echo "no executable!"
471 mk_fail=3
472 fi
473 else
474 cd $1;
475 if test -r Makefile ; then
476 printf 'make ... '
477 if test "x$ADM" = xt ; then
478 $MAKE adall >> make.tr_log 2>&1
479 elif test "x$OADM" = xt ; then
480 $MAKE adAll >> make.tr_log 2>&1
481 else
482 if test "x$JOBS" = x ; then
483 $MAKE >> make.tr_log 2>&1
484 else
485 $MAKE -j $JOBS >> make.tr_log 2>&1
486 fi
487 fi
488 RETVAL=$?
489 if test "x$RETVAL" != x0 ; then
490 tail make.tr_log
491 echo failed
492 cp genmake.log genmake.tr_log $CDIR
493 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
494 rm -f $EXECUTABLE
495 mk_fail=1
496 else
497 echo successful
498 fi
499 else
500 echo "no Makefile !"
501 mk_fail=2
502 fi
503 fi
504 if test "x$ADM" = xt -a -f taf_ad.log ; then
505 head -1 taf_ad.log >> $CDIR"/summary.txt"
506 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
507 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
508 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
509 >> $CDIR"/summary.txt"
510 fi
511 if test $mk_fail != 0 ; then return $mk_fail ; fi
512 )
513 }
514
515 mk_mpi_size()
516 {
517 # mk_mpi_size input_file output_file proc_Nb prefer_to_split_X
518 #
519 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
520 # for an MPI build with no more than proc_Nb processors ;
521 # return the effective number of processors.
522
523 inp=$1
524 out=$2
525 np=$3
526 dirX=$4
527 tmp=TTT.$$
528
529 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
530 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
531 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
532 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
533
534 #- find the largest divisor of input_file proc Nb, but not larger than $np
535 pp=0
536 i=1
537 while [ $i -le $px ] ; do
538 if [ `expr $px % $i` -eq 0 ] ; then
539 j=1
540 while [ $j -le $py ] ; do
541 if [ `expr $py % $j` -eq 0 ] ; then
542 ij=`expr $i \* $j`
543 if [ $ij -gt $pp ] ; then
544 flag=1
545 elif [ $ij -eq $pp ] ; then
546 flag=$dirX
547 else
548 flag=0
549 fi
550 if test $flag = 1 ; then
551 if [ $ij -le $np ] ; then
552 ix=$i ; jy=$j ; pp=$ij
553 #echo " ix,jy= $ix,$jy"
554 fi
555 fi
556 fi
557 j=`expr $j + 1`
558 done
559 fi
560 i=`expr $i + 1`
561 done
562
563 #- create new SIZE.h type file:
564 sx=`expr $sx \* $px / $ix`
565 sy=`expr $sy \* $py / $jy`
566 if [ $verbose -gt 1 ]; then
567 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
568 fi
569 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
570 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
571 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
572 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
573 rm -f $tmp
574 return $pp
575 }
576
577 symlink_mpifiles()
578 {
579 # Put special links so that MPI specific files are used
580 # This MUST be invoked between makeclean and makelinks because
581 # the Makefile will link to non-mpi files by default
582
583 dir=$1
584 code_dir=$2
585 build_dir=$dir/$3
586
587 # These are files that should replace their counter-part when using -mpi
588 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
589
590 for ii in $MPI_FILES ; do
591 i=`echo $ii | sed 's:^\./::'`
592 name=`echo $i | sed 's:_mpi::'`
593 file="../$code_dir/$i"
594 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
595
596 # Is this an MPI run?
597 if test "x$MPI" = x0 ; then
598 # NO: We undo any _mpi symbolically linked files
599 if test -L $build_dir/$name ; then
600 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
601 RETVAL=$?
602 if test "x$RETVAL" = x0 ; then
603 if [ $verbose -gt 1 ]; then
604 echo " Un-linking $name from ../$code_dir" ; fi
605 rm -f $build_dir/$name
606 fi
607 fi
608 else
609 # YES: We symbolically link these files to the build
610 # dir so long as there is no real file in place
611 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
612 RETVAL=$?
613 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
614 if test "x$RETVAL" != x0 ; then
615 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
616 if test ! -r $build_dir/$name ; then
617 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
618 (cd $build_dir; ln -sf $file $name)
619 fi
620 fi
621 fi
622 done
623 }
624
625 linkdata()
626 {
627 # linkdata run_dir input_dir_1 input_dir_2 ...
628 #
629 # symbolically link data files to run directory
630 if test -d $1 ; then
631 (
632 cd $1 ; shift
633 echo 'linkdata from dirs:' $*
634 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
635 for xx in $inpMPI ; do
636 if test -r "../"$1"/"$xx ; then
637 # found 1 _mpi sfx file in 1rst input dir and it is readable
638 yy=`echo $xx | sed 's:\.mpi$::'`
639 if test "x$MPI" = "x0" ; then
640 # not mpi test: remove symbolic link
641 if test -h $yy ; then rm -f $yy ; fi
642 else
643 # mpi test: remove symbolic link & link .mpi sfx file
644 if test -h $yy ; then rm -f $yy ; fi
645 if test ! -r $yy ; then
646 ln -sf "../"$1"/"$xx $yy ;
647 printf " $xx" 1>&2
648 fi
649 fi
650 fi
651 done
652 if test -r "../"$1"/eedata.mth" ; then
653 # found eedata.mth in 1rst input dir and it is readable
654 if test "x$MULTI_THREAD" = "xt" ; then
655 # multi-threaded test: remove symbolic link & link eedata.mth
656 if test -h eedata ; then rm -f eedata ; fi
657 if test ! -r eedata ; then
658 ln -sf "../"$1"/eedata.mth" eedata ;
659 printf ' eedata.mth' 1>&2
660 fi
661 else
662 # not multi-threaded test: remove eedata symbolic link
663 if test -h eedata ; then rm -f eedata ; fi
664 fi
665 fi
666 prevDir='NONE'
667 for ldir in $* ; do
668 if test -d "../"$ldir -a $ldir != $prevDir ; then
669 printf " ldir=${ldir}:" 1>&2
670 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
671 for i in $files ; do
672 if test ! -d "../"$ldir/$i ; then
673 if test ! -r $i ; then
674 printf ' '$i 1>&2
675 ln -sf "../"$ldir"/"$i $i
676 fi
677 fi
678 done
679 printf ' ;' 1>&2
680 if test -x "../"$ldir"/"prepare_run ; then
681 "../"$ldir"/"prepare_run 1>&2
682 else
683 echo '' 1>&2
684 fi
685 fi
686 prevDir=$ldir
687 done
688 )
689 fi
690 }
691
692 runmodel()
693 {
694 # runmodel directory
695 #
696 # runs $COMMAND in "directory"
697 # (where "$COMMAND" is relative to "directory")
698 (
699 cd $1
700 printf 'runmodel in %s ... ' $1
701 if test "x$MPI" != x0 ; then
702 #- adjust the MPI run command with the right number of Procs
703 #echo '' ; echo " COMMAND='$COMMAND'"
704 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
705 if test "x$MPI_MFILE" != x ; then
706 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
707 fi
708 #echo " COMMAND='$COMMAND'"
709 fi
710 if test -L $EXECUTABLE ; then
711 if test -x "../"$builddir"/"$EXECUTABLE ; then
712 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
713 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
714 else rm -f $EXECUTABLE
715 fi
716 fi
717 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
718 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
719 ln -sf "../"$builddir"/"$EXECUTABLE .
720 fi
721 if test ! -x $EXECUTABLE ; then
722 rm -f $RUNLOG ; touch $RUNLOG
723 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
724 echo " no executable:" $EXECUTABLE >> $RUNLOG
725 RETVAL=8
726 ENDVAL=-1
727 else
728 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
729 # output do not exist or is older than executable:
730 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
731 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
732 ( eval $COMMAND ) >> $RUNLOG 2>&1
733 RETVAL=$?
734 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
735 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
736 find . -name "*.meta" -exec rm {} \;
737 find . -name "*.data" -exec rm {} \;
738 rm -rf mnc_test_*
739 fi
740 else
741 RETVAL=0
742 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
743 touch $RUNLOG
744 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
745 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
746 fi
747 fi
748 rm -f run.log_tmp
749 #- in all cases where OutputFile exists, report SIZE (and AD time)
750 if test -f $OUTPUTFILE ; then
751 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
752 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
753 if test "x$ADM" = xt ; then
754 grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt"
755 fi
756 fi
757 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
758 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
759 echo successful
760 printf '=> output from running in %s :\n' $1 1>&2
761 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
762 return 0
763 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
764 #-- for some weird cases (run is finihed but with error code)
765 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
766 printf '=> output from running in %s :\n' $1 1>&2
767 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
768 return 0
769 else
770 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
771 printf '=> output from running in %s :\n' $1 1>&2
772 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
773 cp $RUNLOG $CDIR"/"$RUNLOG
774 return 1
775 fi
776 )
777 }
778
779 createcodelet()
780 {
781 # create codelet for comparing model output
782
783 printf "creating the comparison code (using CC=$CC)... "
784 cat > tr_cmpnum.c <<EOF
785 #include <stdio.h>
786 #include <math.h>
787 int main( int argc, char** argv ) {
788 int linnum,cmplin,best,lncnt;
789 double a,b,abave,relerr;
790 best = -22;
791 lncnt = 0;
792 while( 1 & ( (lncnt+=1) < 999 ) ) {
793 scanf("%d", &linnum);
794 if (linnum == -1) break;
795 scanf("%lf", &a); scanf("%lf", &b);
796 abave = 0.5*(fabs(a)+fabs(b));
797 if ( abave == abave ) {
798 if (abave > 0.0) {
799 relerr=fabs(a-b)/abave;
800 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
801 else { cmplin = -16 ; }
802 best = (best > cmplin) ? best : cmplin; }
803 else { cmplin = -22 ; }
804 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
805 }
806 else {
807 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
808 break; }
809 }
810 if (lncnt == 999) best=-29;
811 if (linnum != -1) best=-99;
812 printf("%d\n", -best);
813 return 0;
814 }
815 EOF
816 $CC -o tr_cmpnum tr_cmpnum.c -lm
817
818 if [ -x ./tr_cmpnum ]; then
819 echo "OK"
820 return 0
821 else
822 echo
823 echo "ERROR: failed to compile comparison code -- please specify"
824 echo " a C compiler using the CC environment variable."
825 exit 1
826 fi
827 }
828
829 formatresults()
830 {
831 # formatresults expt genmake depend make run results*
832
833 nm=$1
834 printf '%s %s %s %s' $2 $3 $4 $5
835 shift; shift; shift; shift; shift;
836 listPrt=$@
837 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
838 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
839 printf '%3s' $listPrt
840 # line below does not work on hp-ux_ia64 : do those substitutions later on
841 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
842
843 if [ $xx = '..' ]; then
844 printf ' N/O '
845 elif [ $xx = '--' ]; then
846 printf ' N/O '
847 elif [ $xx = 99 ]; then
848 printf ' N/O '
849 else
850 if [ $xx -ge $MATCH_CRIT ]; then
851 printf ' pass'
852 else
853 printf ' FAIL'
854 fi
855 fi
856 printf ' %s' $nm
857 printf '\n'
858
859 }
860
861 scandirs()
862 {
863 if [ $# -eq 1 ]; then
864 for arg in * ; do
865 test -f $arg/$1 && echo $arg
866 done
867 else
868 echo $*
869 fi
870 }
871
872
873 check_eedata()
874 {
875 # check_eedata eedata size.h
876 if [ $# -eq 2 ] ; then
877 if test -f $1 -a -f $2 ; then
878 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
879 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
880 if test "x$nx" = x ; then
881 rx=10
882 else
883 rx=`expr $sx % $nx`
884 fi
885 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
886 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
887 if test "x$ny" = x ; then
888 ry=20
889 else
890 ry=`expr $sy % $ny`
891 fi
892 echo `expr $rx + $ry`
893 else
894 echo '-1'
895 fi
896 elif [ $# -eq 1 ] ; then
897 if test -f $1 ; then
898 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
899 if test "x$nx" = x ; then nx=1 ; fi
900 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
901 if test "x$ny" = x ; then ny=1 ; fi
902 #echo $nx $ny
903 echo $nx
904 else
905 echo '-1'
906 fi
907 else
908 echo '-2'
909 fi
910
911 }
912
913 ###############################################################################
914
915
916 # Default properties
917 debug=0
918 verbose=1
919 NBLINES_MKLOG=16000
920
921 IEEE=true
922 if test "x$MITGCM_IEEE" != x ; then
923 IEEE=$MITGCM_IEEE
924 fi
925 GSL=f
926
927 CLEANUP=f
928 NORUN=f
929 QUICK=f
930 NOMAKE=f
931 NOGENMAKE=f
932 NOCLEAN=f
933 NODEPEND=f
934 POSTCLEAN=0
935
936 BASH=
937 OPTFILE=NONE
938 ADDRESSES=
939 TESTDIRS=
940 SKIPDIRS=
941 MPACKDIR="../tools/mpack-1.6"
942 HAVE_MPACK=
943 MPACK=
944 COMMAND=
945 MKDEPEND=
946 if test "x$MAKE" = x ; then
947 MAKE=make
948 fi
949 if test "x$CC" = x ; then
950 CC=cc
951 fi
952 JOBS=
953 MPI=0
954 MPI_MFILE=
955 MULTI_THREAD=f
956 OUTDIR=
957 DELDIR=
958 USE_R4=
959
960 ADM=
961 OADM=
962
963 # list of pTracers to check for monitor output
964 PTRACERS_NUM="1 2 3 4 5"
965
966 MATCH_CRIT=10
967
968 printf "parsing options... "
969
970 ac_prev=
971 for ac_option ; do
972
973 # If the previous option needs an argument, assign it.
974 if test -n "$ac_prev"; then
975 eval "$ac_prev=\$ac_option"
976 ac_prev=
977 continue
978 fi
979
980 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
981
982 case $ac_option in
983
984 -help | --help | -h | --h) usage ;;
985
986 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
987 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
988
989 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
990 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
991 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
992 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
993
994 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
995 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
996 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
997 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
998
999 -bash | --bash | -b | --b) ac_prev=BASH ;;
1000 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1001
1002 -command | --command | -c | --c) ac_prev=COMMAND ;;
1003 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1004
1005 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1006 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1007
1008 -make | --make | -m | --m) ac_prev=MAKE ;;
1009 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1010
1011 -odir | --odir) ac_prev=OUTDIR ;;
1012 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1013
1014 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1015 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1016
1017 -match | --match ) ac_prev=MATCH_CRIT ;;
1018 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1019
1020 -j | --j) ac_prev=JOBS ;;
1021 -j=* | --j=*) JOBS=$ac_optarg ;;
1022
1023 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1024
1025 -norun | --norun | -nr | --nr) NORUN=t ;;
1026 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1027 -quick | --quick | -q | --q) QUICK=t ;;
1028 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1029 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1030 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1031
1032 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1033 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1034
1035 -mpi | --mpi) MPI=2 ;;
1036 -MPI | --MPI) ac_prev=MPI ;;
1037 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1038
1039 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1040 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1041
1042 -mth) MULTI_THREAD=t ;;
1043
1044 -adm | -ad) ADM=t ;;
1045 -oad) OADM=t; NODEPEND=t ;;
1046
1047 -ieee) IEEE=true ;;
1048 -noieee) IEEE= ;;
1049 -gsl) GSL=t ;;
1050
1051 -verbose) verbose=2 ;;
1052 -debug) debug=1 ;;
1053 -quiet) verbose=0 ;;
1054
1055 -deldir | -dd) DELDIR=t ;;
1056
1057 -use_r4|-ur4) USE_R4=t ;;
1058
1059 -ts) TS=t;;
1060 -papis) PAPIS=t;;
1061 -pcls) PCL=t;;
1062
1063 -*) echo "Error: unrecognized option: "$ac_option
1064 usage ;;
1065 *) echo "Error: unrecognized argument: "$ac_option
1066 usage ;;
1067
1068 esac
1069
1070 done
1071
1072 if test "x$QUICK" = xt ; then
1073 NOGENMAKE=t
1074 NOCLEAN=t
1075 NODEPEND=t
1076 fi
1077
1078 #- check length of MPI machine file:
1079 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1080 if test -r $MPI_MFILE ; then
1081 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1082 if [ $nl -lt $MPI ] ; then
1083 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1084 usage
1085 fi
1086 if [ $verbose -gt 1 ]; then
1087 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1088 fi
1089 else
1090 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1091 usage
1092 fi
1093 fi
1094
1095 #- setting for forward or ADM testing
1096 if test "x$ADM" = xt ; then
1097 code_dir=code_ad
1098 inputdir=input_ad
1099 ref_outp="output_adm.txt"
1100 EXECUTABLE="mitgcmuv_ad"
1101 elif test "x$OADM" = xt ; then
1102 code_dir=code_oad
1103 inputdir=input_oad
1104 ref_outp="output_oadm.txt"
1105 EXECUTABLE="mitgcmuv_ad"
1106 else
1107 code_dir=code
1108 inputdir=input
1109 ref_outp="output.txt"
1110 EXECUTABLE="mitgcmuv"
1111 fi
1112
1113 xx=`echo $TESTDIRS | awk '{print $1}'`
1114 if test "x$TESTDIRS" = x ; then
1115 LIST=`scandirs results/$ref_outp`
1116 elif test $xx = 'start_from' ; then
1117 xx=`echo $TESTDIRS | awk '{print $2}'`
1118 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1119 else
1120 #- expand group of experiments:
1121 LIST=" "
1122 for xx in $TESTDIRS
1123 do
1124 case $xx in
1125 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1126 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1127 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1128 ;;
1129 'tutorials')
1130 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1131 *) LIST=${LIST}" "$xx ;;
1132 esac
1133 done
1134 fi
1135 #echo 'LIST='${LIST}'<'
1136 #- skip dirs, remove duplicate and non-directory:
1137 TESTDIRS=" "
1138 count=0
1139 for xx in $LIST
1140 do
1141 yy=`echo $SKIPDIRS | grep -c $xx`
1142 if test $yy = 0 ; then
1143 if test -d $xx ; then
1144 yy=`echo $TESTDIRS | grep -c $xx`
1145 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1146 else count=1 ;
1147 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1148 fi
1149 else
1150 if test $count = 1 ; then echo -n ", \"$xx\""
1151 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1152 fi
1153 fi
1154 done
1155 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1156 #echo 'TESTDIRS='${TESTDIRS}'<'
1157
1158 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1159 OPTFILE=$MITGCM_OF
1160 fi
1161
1162 LOC_MFILE='tr_mpi_mfile'
1163 RUNLOG="run.tr_log"
1164 OUTPUTFILE=$ref_outp
1165 if test "x$COMMAND" = x ; then
1166 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1167 fi
1168 if test "x$MPI" != x0 ; then
1169 OUTPUTFILE="STDOUT.0000"
1170 fi
1171
1172 echo "OK (COMMAND= $COMMAND )"
1173
1174 # set the Default List of output variables to be checked:
1175 # (use default or load experiment-specific list from file "tr_checklist")
1176 # content : 1rst = main variable used to decide if it pass or FAIL
1177 # others = number of matching digits to be printed in summary.txt
1178 if test "x$ADM" = x -a "x$OADM" = x; then
1179 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1180 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1181 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1182 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1183 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1184 else
1185 DEF_CHECK_LIST='Grad Cost Grad'
1186 EMPTY_RESULTS='.. ..'
1187 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1188 fi
1189
1190 # create the FORTRAN comparison code
1191 if test -x tr_cmpnum ; then
1192 echo "skipping comparison code build"
1193 else
1194 createcodelet
1195 fi
1196
1197 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1198 if test "x$ADDRESSES" = x ; then
1199 echo "skipping mpack build"
1200 else
1201 build_mpack
1202 fi
1203
1204 # Create a uniquely named directory to store results
1205 CMDLINE=$0
1206 for xx in "$@" ; do nw=`echo $xx | wc -w`
1207 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1208 else CMDLINE="$CMDLINE '$xx'" ; fi
1209 done
1210 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1211 MACH=`hostname`
1212 UNAMEA=`uname -a`
1213 DATE=`date +%Y%m%d`
1214 BASE="tr_"$MACH"_"$DATE"_"
1215 if test "x$OUTDIR" != x ; then
1216 BASE="tr_"$OUTDIR"_"$DATE"_"
1217 else
1218 short_name=`hostname | sed 's/\..*$//'`
1219 BASE="tr_"$short_name"_"$DATE"_"
1220 fi
1221 DNUM=0
1222 DRESULTS="$BASE$DNUM"
1223 while test -e $DRESULTS ; do
1224 DNUM=$(( $DNUM + 1 ))
1225 DRESULTS="$BASE$DNUM"
1226 done
1227 mkdir $DRESULTS
1228 RETVAL=$?
1229 if test "x$RETVAL" != x0 ; then
1230 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1231 exit 1
1232 fi
1233 SUMMARY="$DRESULTS/summary.txt"
1234 start_date=`date`
1235 echo $start_date > $SUMMARY
1236 echo 'run:' $CMDLINE >> $SUMMARY
1237 echo 'on :' $UNAMEA >> $SUMMARY
1238
1239 of_path=
1240 if test "x$OPTFILE" != xNONE ; then
1241 if test -r $OPTFILE ; then
1242 # get the path
1243 path=${OPTFILE%/*}
1244 if test "x$path" = x ; then
1245 of_path=`pwd`
1246 else
1247 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1248 fi
1249 file=${OPTFILE##*/}
1250 OPTFILE=$of_path/$file
1251 cp $OPTFILE $DRESULTS
1252 echo >> $SUMMARY
1253 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1254 else
1255 echo | tee $SUMMARY
1256 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1257 exit 1
1258 fi
1259 else
1260 echo >> $SUMMARY
1261 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1262 #-note: to be filled later after 1rst run
1263 fi
1264 echo
1265 echo >> $SUMMARY
1266 if test "x$ADM" = x -a "x$OADM" = x; then
1267 if [ $MATCH_CRIT -lt 10 ] ;
1268 then line_0="default "$MATCH_CRIT ;
1269 else line_0="default "$MATCH_CRIT ; fi
1270 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1271 line_1="G D M c m s m s m s m s"
1272 line_2="E p a R g m m e . m m e . m m e . m m e ."
1273 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1274 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1275 for ii in $PTRACERS_NUM ; do
1276 line_0="$line_0 --PTR 0"$ii"--"
1277 line_1="$line_1 m s"
1278 line_2="$line_2 m m e ."
1279 line_3="$line_3 i a a d"
1280 line_4="$line_4 n x n ."
1281 done
1282 echo "$line_0" | tee -a $SUMMARY
1283 echo "$line_1" | tee -a $SUMMARY
1284 echo "$line_2" | tee -a $SUMMARY
1285 echo "$line_3" | tee -a $SUMMARY
1286 echo "$line_4" | tee -a $SUMMARY
1287 echo " " | tee -a $SUMMARY
1288 else
1289 echo "ADJOINT=true" >> $SUMMARY
1290 echo >> $SUMMARY
1291 if [ $MATCH_CRIT -lt 10 ] ;
1292 then line_0="default "$MATCH_CRIT ;
1293 else line_0="default "$MATCH_CRIT ; fi
1294 echo "$line_0" | tee -a $SUMMARY
1295 cat << EOF | tee -a $SUMMARY
1296 G D M C G
1297 E p a R o r
1298 N n k u s a
1299 2 d e n t d
1300
1301 EOF
1302 fi
1303 echo "-------------------------------------------------------------------------------"
1304
1305 # ...and each test directory...
1306 for dir in $TESTDIRS ; do
1307
1308 # set builddir & rundir:
1309 builddir="build"
1310 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1311 rundir="run"
1312 pfxdir="tr_$rundir"
1313 if test ! -d $dir/$rundir ; then
1314 rundir=$builddir
1315 fi
1316 CODE_DIR=$dir/$code_dir
1317 BUILD_DIR=$dir/$builddir
1318
1319 # Cleanup only!
1320 if test "x$CLEANUP" = xt ; then
1321 echo -n ' --- dir:' $BUILD_DIR ': '
1322 makeclean $BUILD_DIR
1323 ( cd $BUILD_DIR
1324 rm -f $EXECUTABLE *.bak
1325 rm -f genmake_state genmake_*optfile genmake.log
1326 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1327 )
1328 if test -d $dir/$rundir/CVS ; then
1329 echo -n ' --- dir:' $dir/$rundir ': '
1330 run_clean $dir/$rundir
1331 fi
1332 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1333 ttd=`echo $trdir | wc -w`
1334 if test $ttd != 0 ; then
1335 echo ' --- rm dir:' $trdir
1336 ( cd $dir ; rm -rf $trdir )
1337 fi
1338 continue
1339 fi
1340
1341 # Verify that the testdir exists and contains previous
1342 # results in the correct location--or skip this directory!
1343 fout=$dir"/results/"$ref_outp
1344 if test ! -r $fout ; then
1345 echo "can't read \"$fout\" -- skipping $dir"
1346 continue
1347 fi
1348
1349 # Check for specific files for particular type of run
1350
1351 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1352 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1353 continue
1354 fi
1355 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1356 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1357 continue
1358 fi
1359
1360 if test "x$MPI" != "x0" ; then
1361 prefer_X=0
1362 if test "x$MULTI_THREAD" = "xt" ; then
1363 retv=`check_eedata $dir"/input/eedata.mth"`
1364 if test $retv = 1 ; then prefer_X=1 ; fi
1365 fi
1366 #- create new SIZE.h with no more than '$MPI' Procs
1367 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $prefer_X
1368 LOC_NPROC=$?
1369 ( cd $BUILD_DIR
1370 if test -r SIZE.h.mpi ; then
1371 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1372 else RETVAL=1
1373 fi
1374 if test "x$RETVAL" = x0 ; then
1375 rm -f tr_size.mpi
1376 else
1377 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1378 fi
1379 )
1380 if test "x$MPI_MFILE" != x ; then
1381 #- create new MPI machine-file with the right number of Procs
1382 rm -f $LOC_MFILE
1383 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1384 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1385 if [ $nl -lt $LOC_NPROC ] ; then
1386 rm -f $LOC_MFILE
1387 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1388 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1389 fi
1390 if [ $verbose -gt 1 ]; then
1391 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1392 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1393 fi
1394 fi
1395 if test "x$MULTI_THREAD" = "xt" ; then
1396 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1397 if test $retv != 0 ; then
1398 echo "input/eedata.mth tiling misfit -- skipping $dir"
1399 continue
1400 fi
1401 fi
1402 fi
1403
1404 # Check whether there are "extra runs" for this testdir
1405 extra_runs=
1406 if test "x$NORUN" = xf ; then
1407 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1408 fi
1409 #echo "ex_run_dirs='$ex_run_dirs'"
1410 for exd in $ex_run_dirs ; do
1411 name=`echo $exd | sed -e "s/$inputdir\.//"`
1412 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1413 outf="$dir/results/$refExOut"
1414 if test -f $outf -a -r $outf ; then
1415 if test "x$MULTI_THREAD" = "xt" ; then
1416 if test -r $dir"/"$exd"/eedata.mth" ; then
1417 if test "x$MPI" = "x0" ; then
1418 extra_runs="$extra_runs $name"
1419 else
1420 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1421 if test $retv = 0 ; then
1422 extra_runs="$extra_runs $name"
1423 else
1424 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1425 fi
1426 fi
1427 #else echo $dir"/"$exd"/eedata.mth: not found"
1428 fi
1429 else
1430 extra_runs="$extra_runs $name"
1431 fi
1432 fi
1433 done
1434
1435 echo
1436 if test "x$extra_runs" = "x" ; then
1437 echo "Experiment: $dir"
1438 else
1439 echo "Experiment: $dir ; extra_runs=$extra_runs"
1440 fi
1441 echo
1442 unset genmake makedepend make run
1443 results=$EMPTY_RESULTS
1444
1445 # Create an output dir & summary.txt file for each tested experiment (tdir)
1446 locDIR=$DRESULTS"/"$dir
1447 mkdir $locDIR
1448 #- report to this experiment local summary file ---
1449 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1450 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1451 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1452 CDIR=`pwd`"/$locDIR"
1453
1454 if test "x$NORUN" = xt ; then
1455 run=N
1456 genmakemodel $dir/$builddir && genmake=Y \
1457 && makeclean $dir/$builddir \
1458 && symlink_mpifiles $dir $code_dir $builddir \
1459 && makedependmodel $dir/$builddir && makedepend=Y \
1460 && makemodel $dir/$builddir && make=Y
1461 else
1462 genmakemodel $dir/$builddir && genmake=Y \
1463 && makeclean $dir/$builddir \
1464 && symlink_mpifiles $dir $code_dir $builddir \
1465 && makedependmodel $dir/$builddir && makedepend=Y \
1466 && makemodel $dir/$builddir && make=Y \
1467 && run_clean $dir/$rundir \
1468 && linkdata $dir/$rundir $inputdir \
1469 && runmodel $dir/$rundir && run=Y \
1470 && results=`testoutput_run $dir $rundir $ref_outp`
1471 fi
1472 #echo "results='$results'"
1473
1474 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1475 echo 1>&2
1476 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1477 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1478
1479 for ex in $extra_runs ; do
1480 unset run
1481 results=$EMPTY_RESULTS
1482 # reference output file
1483 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1484 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1485 locDIR=$DRESULTS"/"$dir"."$ex
1486 mkdir $locDIR
1487 #- report to this experiment local summary file ---
1488 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1489 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1490 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1491 CDIR=`pwd`"/$locDIR"
1492 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1493 run_clean $dir/$pfxdir.$ex
1494 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1495 runmodel $dir/$pfxdir.$ex && run=Y \
1496 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1497 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1498 fres="$fres.$ex"
1499 echo 1>&2
1500 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1501 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1502 if test "x$POSTCLEAN" = x2 ; then
1503 run_clean $dir/$pfxdir.$ex
1504 fi
1505 done
1506
1507 if test -f $DRESULTS"/"genmake_state ; then : ; else
1508 if test -f $dir/$builddir/Makefile ; then
1509 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1510 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1511 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1512 echo " $mkOpt" >> $DRESULTS/genmake_state
1513 if test "x$OPTFILE" = xNONE ; then
1514 eval $mkOpt
1515 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1516 $SUMMARY > tr_0.tmp_log
1517 RETVAL=$?
1518 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1519 cp tr_0.tmp_log $SUMMARY
1520 else rm -f tr_0.tmp_log
1521 fi
1522 fi
1523 gmkLog=$dir/$builddir/genmake.log
1524 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1525 RETVAL=$?
1526 if test "x$RETVAL" = x0 ; then
1527 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1528 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1529 | grep -v '^... compiler version ' > tr_1.tmp_log
1530 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1531 >> $DRESULTS/genmake_state
1532 rm -f tr_1.tmp_log
1533 fi
1534 fi
1535 fi
1536 #postclean $dir/$builddir
1537 if test "x$POSTCLEAN" = x2 ; then
1538 makeclean $dir/$builddir \
1539 && run_clean $dir/$rundir
1540 fi
1541 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1542
1543 echo "-------------------------------------------------------------------------------"
1544
1545 done
1546
1547 printf "Start time: " >> $SUMMARY
1548 echo "$start_date" >> $SUMMARY
1549 printf "End time: " >> $SUMMARY
1550 date >> $SUMMARY
1551
1552 # If addresses were supplied and mpack built successfully, then try
1553 # to send email using mpack.
1554 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1555 echo "No results email was sent."
1556 else
1557 if test "x$HAVE_MPACK" = xt ; then
1558 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1559 && gzip $DRESULTS".tar" \
1560 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1561 RETVAL=$?
1562 if test "x$RETVAL" != x0 ; then
1563 echo
1564 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1565 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1566 echo " summary of results from the directory \"$DRESULTS\"."
1567 echo
1568 else
1569 echo
1570 echo "An email containing results was sent to the following addresses:"
1571 echo " \"$ADDRESSES\""
1572 echo
1573 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1574 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1575 fi
1576 fi
1577 fi
1578
1579 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1580 rm -f tr_cmpnum.c tr_cmpnum
1581 fi
1582
1583 if test "x$CLEANUP" != xt ; then
1584 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1585 if test -e tr_out.txt ; then
1586 mv tr_out.txt tr_out.txt.old
1587 fi
1588 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1589 fi
1590
1591 if test "x$DELDIR" = xt ; then
1592 rm -rf $DRESULTS
1593 fi

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