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Revision 1.162 - (show annotations) (download)
Wed May 11 01:51:07 2011 UTC (12 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint62x
Changes since 1.161: +2 -2 lines
remove OUTPUTFILE before the exec of run-command

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.161 2011/04/30 22:20:17 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
19 echo " (DEF=\"-ieee\")"
20 echo " (-gsl) compile with \"-gsl\" flag"
21 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
22 echo " (-optfile|-of) STRING list of optfiles to use"
23 echo " (-addr|-a) STRING list of email recipients"
24 echo " (DEF=\"\" no email is sent)"
25 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
26 echo " (DEF=\"../tools/mpack-1.6\")"
27 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
28 echo " (recognized groups: basic, tutorials)"
29 echo " (DEF=\"\" which test all)"
30 echo " (if list= 'start_from THIS_EXP' then"
31 echo " test THIS_EXP + all the following)"
32 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
33 echo " (DEF=\"\" which test all)"
34 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
35 echo " Bourne-compatible \"sh\" shell"
36 echo " (DEF=\"\" for \"bash\")"
37 echo " (-adm|-ad) perform an adjoint run"
38 echo " (-oad) perform an OpenAD adjoint run"
39 echo " (-command|-c) STRING command to run"
40 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
41 echo " (-make|-m) STRING command to use for \"make\""
42 echo " (DEF=\"make\")"
43 echo " (-odir) STRING used to build output directory name"
44 echo " (DEF=\"hostname\")"
45 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
46 # echo " (DEF=\"1 2 3 4 5\")"
47 echo " (-match) NUMBER Matching Criteria (number of digits)"
48 echo " (DEF=\"$MATCH_CRIT\")"
49 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
50 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
51 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
52 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
53 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
54 echo " (-nogenmake|-ng) skip the genmake stage"
55 echo " (-noclean|-nc) skip the \"make clean\" stage"
56 echo " (-nodepend|-nd) skip the \"make depend\" stage"
57 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
58 echo " (-deloutp|-do) delete output files after successful run"
59 echo " (-deldir|-dd) on success, delete the output directory"
60 echo " (-ts) provide timing information per timestep"
61 echo " (-papis) provide MFlop/s per timestep using PAPI"
62 echo " (-pcls) provide MFlop/s per timestep using PCL"
63 echo
64 echo "and where STRING can be a whitespace-delimited list"
65 echo "such as:"
66 echo
67 echo " -t 'exp0 exp2 exp3' "
68 echo " -addr='abc@123.com testing@home.org'"
69 echo
70 echo "provided that the expression is properly quoted within the current"
71 echo "shell (note the use of single quotes to protect white space)."
72 echo
73 exit 1
74 }
75
76 # build the mpack utility
77 build_mpack()
78 {
79 printf "building the mpack utility... "
80 MPACK="$MPACKDIR/mpack"
81 if test ! -x $MPACK ; then
82 if test ! -d $MPACKDIR ; then
83 echo
84 echo "Error: can't find \"$MPACKDIR\""
85 echo " are you sure this program is being run in the correct "
86 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
87 echo
88 HAVE_MPACK=f
89 fi
90 if test "x$CC" = x ; then
91 export CC=cc
92 fi
93 printf "building mpack (using CC=$CC)... "
94 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
95 RETVAL=$?
96 if test "x$RETVAL" != x0 ; then
97 echo
98 echo "Error building the mpack tools at: $MPACK_DIR"
99 echo
100 HAVE_MPACK=f
101 else
102 rm -f tr_build_mpack.out
103 HAVE_MPACK=t
104 echo "done"
105 fi
106 else
107 HAVE_MPACK=t
108 echo "already exist"
109 fi
110 }
111
112 testoutput_var()
113 {
114 # testoutput_var dir s1 label subdir reference_output
115 #
116 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
117 # with same output from reference file $dir/results/$reference_output
118 # using search strings s1 and text label
119
120 if [ $debug -gt 0 ]; then
121 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
122 fi
123 if [ -r $1/$4/$OUTPUTFILE ]; then
124 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
125 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
126 if [ $lncntA -lt 2 ]; then
127 if [ $verbose -gt 0 ]; then
128 echo Not enough lines of output when searching for "$2" 1>&2
129 fi
130 return 99
131 fi
132 else
133 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
134 return 99
135 fi
136 if [ $debug -gt 0 ]; then
137 echo testoutput_var: grep "$2" $1/results/$5 1>&2
138 fi
139 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
140 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
141 if [ $lncntB -lt 2 ]; then
142 if [ $verbose -gt 0 ]; then
143 echo Not enough lines of output when searching for "$2" 1>&2
144 fi
145 return 99
146 fi
147 if [ $lncntA -ne $lncntB ]; then
148 if [ $verbose -gt 0 ]; then
149 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
150 fi
151 return 99
152 fi
153 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
154 if [ $has_nan -gt 0 ] ; then
155 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
156 return 99
157 fi
158 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
159 if [ $has_inf -gt 0 ] ; then
160 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
161 return 99
162 fi
163 if [ $debug -gt 0 ]; then
164 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
165 fi
166 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
167 if [ $debug -gt 0 ]; then
168 echo testoutput_var: compare_lines 1>&2
169 fi
170 if [ $verbose -gt 1 ]; then
171 cat tmp3.txt 1>&2
172 fi
173 echo "-1" >> tmp3.txt
174 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
175 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
176 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
177 if [ $digits_of_similarity -eq 99 ]; then
178 if [ $verbose -gt 0 ]; then
179 echo testoutput_var: No comparison was available for \"$3\" 1>&2
180 fi
181 digits_of_similarity=99
182 else
183 if [ $verbose -gt 0 ]; then
184 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
185 fi
186 fi
187 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
188
189 return $digits_of_similarity
190 }
191
192 testoutput_run()
193 {
194 # testoutput_run directory subdir reference_output
195 #
196 # test output from 1 run in "directory"
197 # --> same processing for adjoint & forward test
198 # default list of output variables to be checked:
199 # 1rst : main variable used to decide if it pass or FAIL
200 # others : number of matching digits to be printed in summary.txt
201 listChk=$DEF_CHECK_LIST
202 # load experiment-specific list from file "tr_checklist" (if it exist)
203 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
204 sVar=`echo $listChk | awk '{print $1}'`
205 # remove 1rst var and expand the list: + => min max mean s.d
206 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
207 | sed 's/+//g' | sed "s/^$sVar//"`
208 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
209 # check for ptracer output in reference_output file :
210 outpref=$1/results/$3
211 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
212 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
213 for ii in $PTRACERS_NUM ; do
214 ptrfound=0
215 for jj in $ptr_mon ; do
216 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
217 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
218 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
219 done
220 if test $ptrfound = '1' ; then
221 eval "HAVE_PTR0"$ii"=t"
222 else
223 eval "HAVE_PTR0"$ii"=f"
224 if test "x$ADM" = x -a "x$OADM" = x; then
225 # remove this ptr from the list of output variable to check
226 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
227 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
228 fi
229 fi
230 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
231 done
232 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
233 if test $tst != 1 ; then
234 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
235 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
236 echo "==> WARNING: in checked list:" $listVar 1>&2
237 #- put it back once:
238 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
239 fi
240 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
241 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
242 #---
243 allargs=""
244 for xx in $listVar
245 do
246 case $xx in
247 'PS') if [ $debug -gt 0 ]
248 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
249 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
250 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
251 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
252 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
253 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
254 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
255 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
256 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
257 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
258 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
259 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
260 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
261 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
262 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
263 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
264 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
265 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
266 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
267 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
268 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
269 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
270 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
271 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
272 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
273 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
274 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
275 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
276 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
277 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
278 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
279 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
280 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
281 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
282 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
283 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
284 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
285 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
286 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
287 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
288 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
289 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
290 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
291 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
292 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
293 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
294 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
295 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
296 esac
297 if test $xx = $sVar
298 then allargs="$allargs > $yy <"
299 else allargs="$allargs $yy"
300 fi
301 done
302
303 nbVar=`echo $listVar | awk '{print NF}'`
304 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
305 #-- fill line (up to standard length) with dot:
306 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
307 echo $allargs $adNul
308 else
309 echo $allargs
310 fi
311 # <-- same processing for adjoint & forward test
312 }
313
314 genmakemodel()
315 {
316 # genmakemodel directory
317 if test "x$NOGENMAKE" = xt ; then
318 echo "genmake skipped!"
319 else
320 if test "x$BASH" = x ; then
321 GENMAKE2="../../../tools/genmake2"
322 else
323 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
324 fi
325 (
326 cd $1;
327 command="$GENMAKE2 -ds -m $MAKE"
328 if test "x$MKDEPEND" != x ; then
329 command="$command -makedepend=$MKDEPEND"
330 fi
331 if test "x$ADM" = xt ; then
332 command="$command --mods=../code_ad"
333 elif test "x$OADM" = xt ; then
334 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
335 else
336 command="$command -mods=../code"
337 fi
338 if test "x$OPTFILE" != xNONE ; then
339 command="$command -optfile=$OPTFILE"
340 fi
341 if test "x$IEEE" != x ; then
342 command="$command -ieee"
343 fi
344 if test "x$GSL" = xt ; then
345 command="$command -gsl"
346 fi
347 if test "x$MPI" != x0 ; then
348 command="$command -mpi"
349 fi
350 if test "x$MULTI_THREAD" = xt ; then
351 #- run multi-threaded using OpenMP:
352 command="$command -omp"
353 fi
354 if test "x$USE_R4" = xt ; then
355 command="$command -use_r4"
356 fi
357 if test "x$TS" = xt ; then
358 command="$command -ts"
359 fi
360 if test "x$PAPIS" = xt ; then
361 command="$command -papis"
362 else
363 if test "x$PCLS" = xt ; then
364 command="$command -pcls"
365 fi
366 fi
367 printf 'genmake ... '
368 eval $command > genmake.tr_log 2>&1
369 RETVAL=$?
370 # Reduce the size of the testing emails!
371 head -100 Makefile > $CDIR/Makefile_head
372 if test "x$RETVAL" != x0 ; then
373 tail genmake.tr_log
374 echo "genmakemodel: genmake failed"
375 cp genmake.log genmake_* genmake.tr_log $CDIR
376 return 1
377 else
378 echo "successful"
379 fi
380 )
381 fi
382 }
383
384 makeclean()
385 {
386 # makeclean directory
387 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
388 if test "x$NOCLEAN" = xt ; then
389 echo "make Clean skipped!"
390 else
391 (
392 cd $1;
393 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
394 if test -r Makefile ; then
395 printf 'clean build-dir: make Clean ... '
396 $MAKE Clean >> make.tr_log 2>&1
397 RETVAL=$?
398 if test "x$RETVAL" != x0 ; then
399 tail make.tr_log
400 echo "makeclean: \"make Clean\" failed"
401 cp make.tr_log genmake.log genmake.tr_log $CDIR
402 return 1
403 fi
404 echo successful
405 else
406 echo ''
407 fi
408 exit 0
409 )
410 fi
411 }
412
413 run_clean()
414 {
415 # run_clean directory
416 if test "x$NOCLEAN" = xt ; then
417 echo "run_clean skipped!"
418 else
419 (
420 cd $1;
421 printf 'clean run-dir ... '
422 # part of what is done after "make clean" when doing "make CLEAN"
423 find . -name "*.meta" -exec rm {} \;
424 find . -name "*.data" -exec rm {} \;
425 find . -name "fort.*" -exec rm {} \;
426 find . -type l -exec rm {} \;
427 #- should remove executable only if sym-link (alredy done above)
428 rm -f $RUNLOG *.txt STD* *diagnostics.log datetime
429 rm -rf mnc_test_*
430 rm -f *_MIT_CE_000.opt0000 costfunction*0000
431 echo successful
432 exit 0
433 )
434 fi
435 }
436
437 makedependmodel()
438 {
439 # makedependmodel directory
440 if test "x$NODEPEND" = xt ; then
441 echo "make depend skipped!"
442 else
443 (
444 cd $1;
445 printf 'make depend ... '
446 $MAKE depend >> make.tr_log 2>&1
447 RETVAL=$?
448 if test "x$RETVAL" != x0 ; then
449 tail make.tr_log
450 echo "makedependmodel: make depend failed"
451 cp make.tr_log genmake.log genmake.tr_log $CDIR
452 return 1
453 else
454 echo successful
455 fi
456 )
457 fi
458 }
459
460 makemodel()
461 {
462 # makemodel directory
463 (
464 mk_fail=0
465 if test "x$NOMAKE" = xt ; then
466 cd $1;
467 if test -x $EXECUTABLE ; then
468 echo "make skipped!"
469 else
470 echo "no executable!"
471 mk_fail=3
472 fi
473 else
474 cd $1;
475 if test -r Makefile ; then
476 printf 'make ... '
477 if test "x$ADM" = xt ; then
478 $MAKE adall >> make.tr_log 2>&1
479 elif test "x$OADM" = xt ; then
480 $MAKE adAll >> make.tr_log 2>&1
481 else
482 if test "x$JOBS" = x ; then
483 $MAKE >> make.tr_log 2>&1
484 else
485 $MAKE -j $JOBS >> make.tr_log 2>&1
486 fi
487 fi
488 RETVAL=$?
489 if test "x$RETVAL" != x0 ; then
490 tail make.tr_log
491 echo failed
492 cp make.tr_log genmake.log genmake.tr_log $CDIR
493 rm -f $EXECUTABLE
494 mk_fail=1
495 else
496 echo successful
497 fi
498 else
499 echo "no Makefile !"
500 mk_fail=2
501 fi
502 fi
503 if test "x$ADM" = xt -a -f taf_ad.log ; then
504 head -1 taf_ad.log >> $CDIR"/summary.txt"
505 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
506 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
507 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
508 >> $CDIR"/summary.txt"
509 fi
510 if test $mk_fail != 0 ; then return $mk_fail ; fi
511 )
512 }
513
514 mk_mpi_size()
515 {
516 # mk_mpi_size input_file output_file proc_Nb prefer_to_split_X
517 #
518 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
519 # for an MPI build with no more than proc_Nb processors ;
520 # return the effective number of processors.
521
522 inp=$1
523 out=$2
524 np=$3
525 dirX=$4
526 tmp=TTT.$$
527
528 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
529 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
530 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
531 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
532
533 #- find the largest divisor of input_file proc Nb, but not larger than $np
534 pp=0
535 i=1
536 while [ $i -le $px ] ; do
537 if [ `expr $px % $i` -eq 0 ] ; then
538 j=1
539 while [ $j -le $py ] ; do
540 if [ `expr $py % $j` -eq 0 ] ; then
541 ij=`expr $i \* $j`
542 if [ $ij -gt $pp ] ; then
543 flag=1
544 elif [ $ij -eq $pp ] ; then
545 flag=$dirX
546 else
547 flag=0
548 fi
549 if test $flag = 1 ; then
550 if [ $ij -le $np ] ; then
551 ix=$i ; jy=$j ; pp=$ij
552 #echo " ix,jy= $ix,$jy"
553 fi
554 fi
555 fi
556 j=`expr $j + 1`
557 done
558 fi
559 i=`expr $i + 1`
560 done
561
562 #- create new SIZE.h type file:
563 sx=`expr $sx \* $px / $ix`
564 sy=`expr $sy \* $py / $jy`
565 if [ $verbose -gt 1 ]; then
566 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
567 fi
568 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
569 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
570 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
571 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
572 rm -f $tmp
573 return $pp
574 }
575
576 symlink_mpifiles()
577 {
578 # Put special links so that MPI specific files are used
579 # This MUST be invoked between makeclean and makelinks because
580 # the Makefile will link to non-mpi files by default
581
582 dir=$1
583 code_dir=$2
584 build_dir=$dir/$3
585
586 # These are files that should replace their counter-part when using -mpi
587 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
588
589 for ii in $MPI_FILES ; do
590 i=`echo $ii | sed 's:^\./::'`
591 name=`echo $i | sed 's:_mpi::'`
592 file="../$code_dir/$i"
593 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
594
595 # Is this an MPI run?
596 if test "x$MPI" = x0 ; then
597 # NO: We undo any _mpi symbolically linked files
598 if test -L $build_dir/$name ; then
599 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
600 RETVAL=$?
601 if test "x$RETVAL" = x0 ; then
602 if [ $verbose -gt 1 ]; then
603 echo " Un-linking $name from ../$code_dir" ; fi
604 rm -f $build_dir/$name
605 fi
606 fi
607 else
608 # YES: We symbolically link these files to the build
609 # dir so long as there is no real file in place
610 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
611 RETVAL=$?
612 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
613 if test "x$RETVAL" != x0 ; then
614 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
615 if test ! -r $build_dir/$name ; then
616 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
617 (cd $build_dir; ln -sf $file $name)
618 fi
619 fi
620 fi
621 done
622 }
623
624 linkdata()
625 {
626 # linkdata run_dir input_dir_1 input_dir_2 ...
627 #
628 # symbolically link data files to run directory
629 if test -d $1 ; then
630 (
631 cd $1 ; shift
632 echo 'linkdata from dirs:' $*
633 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
634 for xx in $inpMPI ; do
635 if test -r "../"$1"/"$xx ; then
636 # found 1 _mpi sfx file in 1rst input dir and it is readable
637 yy=`echo $xx | sed 's:\.mpi$::'`
638 if test "x$MPI" = "x0" ; then
639 # not mpi test: remove symbolic link
640 if test -h $yy ; then rm -f $yy ; fi
641 else
642 # mpi test: remove symbolic link & link .mpi sfx file
643 if test -h $yy ; then rm -f $yy ; fi
644 if test ! -r $yy ; then
645 ln -sf "../"$1"/"$xx $yy ;
646 printf " $xx" 1>&2
647 fi
648 fi
649 fi
650 done
651 if test -r "../"$1"/eedata.mth" ; then
652 # found eedata.mth in 1rst input dir and it is readable
653 if test "x$MULTI_THREAD" = "xt" ; then
654 # multi-threaded test: remove symbolic link & link eedata.mth
655 if test -h eedata ; then rm -f eedata ; fi
656 if test ! -r eedata ; then
657 ln -sf "../"$1"/eedata.mth" eedata ;
658 printf ' eedata.mth' 1>&2
659 fi
660 else
661 # not multi-threaded test: remove eedata symbolic link
662 if test -h eedata ; then rm -f eedata ; fi
663 fi
664 fi
665 prevDir='NONE'
666 for ldir in $* ; do
667 if test -d "../"$ldir -a $ldir != $prevDir ; then
668 printf " ldir=${ldir}:" 1>&2
669 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
670 for i in $files ; do
671 if test ! -d "../"$ldir/$i ; then
672 if test ! -r $i ; then
673 printf ' '$i 1>&2
674 ln -sf "../"$ldir"/"$i $i
675 fi
676 fi
677 done
678 printf ' ;' 1>&2
679 if test -x "../"$ldir"/"prepare_run ; then
680 "../"$ldir"/"prepare_run 1>&2
681 else
682 echo '' 1>&2
683 fi
684 fi
685 prevDir=$ldir
686 done
687 )
688 fi
689 }
690
691 runmodel()
692 {
693 # runmodel directory
694 #
695 # runs $COMMAND in "directory"
696 # (where "$COMMAND" is relative to "directory")
697 (
698 cd $1
699 printf 'runmodel in %s ... ' $1
700 if test "x$MPI" != x0 ; then
701 #- adjust the MPI run command with the right number of Procs
702 #echo '' ; echo " COMMAND='$COMMAND'"
703 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
704 if test "x$MPI_MFILE" != x ; then
705 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
706 fi
707 #echo " COMMAND='$COMMAND'"
708 fi
709 if test -L $EXECUTABLE ; then
710 if test -x "../"$builddir"/"$EXECUTABLE ; then
711 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
712 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
713 else rm -f $EXECUTABLE
714 fi
715 fi
716 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
717 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
718 ln -sf "../"$builddir"/"$EXECUTABLE .
719 fi
720 if test ! -x $EXECUTABLE ; then
721 rm -f $RUNLOG ; touch $RUNLOG
722 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
723 echo " no executable:" $EXECUTABLE >> $RUNLOG
724 RETVAL=8
725 ENDVAL=-1
726 else
727 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
728 # output do not exist or is older than executable:
729 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
730 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
731 ( eval $COMMAND ) >> $RUNLOG 2>&1
732 RETVAL=$?
733 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
734 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
735 find . -name "*.meta" -exec rm {} \;
736 find . -name "*.data" -exec rm {} \;
737 rm -rf mnc_test_*
738 fi
739 else
740 RETVAL=0
741 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
742 touch $RUNLOG
743 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
744 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
745 fi
746 fi
747 rm -f run.log_tmp
748 #- in all cases where OutputFile exists, report SIZE (and AD time)
749 if test -f $OUTPUTFILE ; then
750 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
751 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
752 if test "x$ADM" = xt ; then
753 grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt"
754 fi
755 fi
756 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
757 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
758 echo successful
759 printf '=> output from running in %s :\n' $1 1>&2
760 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
761 return 0
762 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
763 #-- for some weird cases (run is finihed but with error code)
764 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
765 printf '=> output from running in %s :\n' $1 1>&2
766 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
767 return 0
768 else
769 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
770 printf '=> output from running in %s :\n' $1 1>&2
771 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
772 cp $RUNLOG $CDIR"/"$RUNLOG
773 return 1
774 fi
775 )
776 }
777
778 createcodelet()
779 {
780 # create codelet for comparing model output
781
782 printf "creating the comparison code (using CC=$CC)... "
783 cat > tr_cmpnum.c <<EOF
784 #include <stdio.h>
785 #include <math.h>
786 int main( int argc, char** argv ) {
787 int linnum,cmplin,best,lncnt;
788 double a,b,abave,relerr;
789 best = -22;
790 lncnt = 0;
791 while( 1 & ( (lncnt+=1) < 999 ) ) {
792 scanf("%d", &linnum);
793 if (linnum == -1) break;
794 scanf("%lf", &a); scanf("%lf", &b);
795 abave = 0.5*(fabs(a)+fabs(b));
796 if ( abave == abave ) {
797 if (abave > 0.0) {
798 relerr=fabs(a-b)/abave;
799 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
800 else { cmplin = -16 ; }
801 best = (best > cmplin) ? best : cmplin; }
802 else { cmplin = -22 ; }
803 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
804 }
805 else {
806 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
807 break; }
808 }
809 if (lncnt == 999) best=-29;
810 if (linnum != -1) best=-99;
811 printf("%d\n", -best);
812 return 0;
813 }
814 EOF
815 $CC -o tr_cmpnum tr_cmpnum.c -lm
816
817 if [ -x ./tr_cmpnum ]; then
818 echo "OK"
819 return 0
820 else
821 echo
822 echo "ERROR: failed to compile comparison code -- please specify"
823 echo " a C compiler using the CC environment variable."
824 exit 1
825 fi
826 }
827
828 formatresults()
829 {
830 # formatresults expt genmake depend make run results*
831
832 nm=$1
833 printf '%s %s %s %s' $2 $3 $4 $5
834 shift; shift; shift; shift; shift;
835 listPrt=$@
836 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
837 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
838 printf '%3s' $listPrt
839 # line below does not work on hp-ux_ia64 : do those substitutions later on
840 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
841
842 if [ $xx = '..' ]; then
843 printf ' N/O '
844 elif [ $xx = '--' ]; then
845 printf ' N/O '
846 elif [ $xx = 99 ]; then
847 printf ' N/O '
848 else
849 if [ $xx -ge $MATCH_CRIT ]; then
850 printf ' pass'
851 else
852 printf ' FAIL'
853 fi
854 fi
855 printf ' %s' $nm
856 printf '\n'
857
858 }
859
860 scandirs()
861 {
862 if [ $# -eq 1 ]; then
863 for arg in * ; do
864 test -f $arg/$1 && echo $arg
865 done
866 else
867 echo $*
868 fi
869 }
870
871
872 check_eedata()
873 {
874 # check_eedata eedata size.h
875 if [ $# -eq 2 ] ; then
876 if test -f $1 -a -f $2 ; then
877 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
878 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
879 if test "x$nx" = x ; then
880 rx=10
881 else
882 rx=`expr $sx % $nx`
883 fi
884 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
885 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
886 if test "x$ny" = x ; then
887 ry=20
888 else
889 ry=`expr $sy % $ny`
890 fi
891 echo `expr $rx + $ry`
892 else
893 echo '-1'
894 fi
895 elif [ $# -eq 1 ] ; then
896 if test -f $1 ; then
897 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
898 if test "x$nx" = x ; then nx=1 ; fi
899 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
900 if test "x$ny" = x ; then ny=1 ; fi
901 #echo $nx $ny
902 echo $nx
903 else
904 echo '-1'
905 fi
906 else
907 echo '-2'
908 fi
909
910 }
911
912 ###############################################################################
913
914
915 # Default properties
916 debug=0
917 verbose=1
918
919 IEEE=true
920 if test "x$MITGCM_IEEE" != x ; then
921 IEEE=$MITGCM_IEEE
922 fi
923 GSL=f
924
925 CLEANUP=f
926 NORUN=f
927 QUICK=f
928 NOMAKE=f
929 NOGENMAKE=f
930 NOCLEAN=f
931 NODEPEND=f
932 POSTCLEAN=0
933
934 BASH=
935 OPTFILE=NONE
936 ADDRESSES=
937 TESTDIRS=
938 SKIPDIRS=
939 MPACKDIR="../tools/mpack-1.6"
940 HAVE_MPACK=
941 MPACK=
942 COMMAND=
943 MKDEPEND=
944 if test "x$MAKE" = x ; then
945 MAKE=make
946 fi
947 if test "x$CC" = x ; then
948 CC=cc
949 fi
950 JOBS=
951 MPI=0
952 MPI_MFILE=
953 MULTI_THREAD=f
954 OUTDIR=
955 DELDIR=
956 USE_R4=
957
958 ADM=
959 OADM=
960
961 # list of pTracers to check for monitor output
962 PTRACERS_NUM="1 2 3 4 5"
963
964 MATCH_CRIT=10
965
966 printf "parsing options... "
967
968 ac_prev=
969 for ac_option ; do
970
971 # If the previous option needs an argument, assign it.
972 if test -n "$ac_prev"; then
973 eval "$ac_prev=\$ac_option"
974 ac_prev=
975 continue
976 fi
977
978 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
979
980 case $ac_option in
981
982 -help | --help | -h | --h) usage ;;
983
984 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
985 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
986
987 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
988 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
989 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
990 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
991
992 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
993 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
994 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
995 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
996
997 -bash | --bash | -b | --b) ac_prev=BASH ;;
998 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
999
1000 -command | --command | -c | --c) ac_prev=COMMAND ;;
1001 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1002
1003 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1004 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1005
1006 -make | --make | -m | --m) ac_prev=MAKE ;;
1007 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1008
1009 -odir | --odir) ac_prev=OUTDIR ;;
1010 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1011
1012 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1013 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1014
1015 -match | --match ) ac_prev=MATCH_CRIT ;;
1016 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1017
1018 -j | --j) ac_prev=JOBS ;;
1019 -j=* | --j=*) JOBS=$ac_optarg ;;
1020
1021 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1022
1023 -norun | --norun | -nr | --nr) NORUN=t ;;
1024 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1025 -quick | --quick | -q | --q) QUICK=t ;;
1026 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1027 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1028 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1029
1030 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1031 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1032
1033 -mpi | --mpi) MPI=2 ;;
1034 -MPI | --MPI) ac_prev=MPI ;;
1035 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1036
1037 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1038 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1039
1040 -mth) MULTI_THREAD=t ;;
1041
1042 -adm | -ad) ADM=t ;;
1043 -oad) OADM=t; NODEPEND=t ;;
1044
1045 -ieee) IEEE=true ;;
1046 -noieee) IEEE= ;;
1047 -gsl) GSL=t ;;
1048
1049 -verbose) verbose=2 ;;
1050 -debug) debug=1 ;;
1051 -quiet) verbose=0 ;;
1052
1053 -deldir | -dd) DELDIR=t ;;
1054
1055 -use_r4|-ur4) USE_R4=t ;;
1056
1057 -ts) TS=t;;
1058 -papis) PAPIS=t;;
1059 -pcls) PCL=t;;
1060
1061 -*) echo "Error: unrecognized option: "$ac_option
1062 usage ;;
1063 *) echo "Error: unrecognized argument: "$ac_option
1064 usage ;;
1065
1066 esac
1067
1068 done
1069
1070 if test "x$QUICK" = xt ; then
1071 NOGENMAKE=t
1072 NOCLEAN=t
1073 NODEPEND=t
1074 fi
1075
1076 #- check length of MPI machine file:
1077 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1078 if test -r $MPI_MFILE ; then
1079 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1080 if [ $nl -lt $MPI ] ; then
1081 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1082 usage
1083 fi
1084 if [ $verbose -gt 1 ]; then
1085 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1086 fi
1087 else
1088 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1089 usage
1090 fi
1091 fi
1092
1093 #- setting for forward or ADM testing
1094 if test "x$ADM" = xt ; then
1095 code_dir=code_ad
1096 inputdir=input_ad
1097 ref_outp="output_adm.txt"
1098 EXECUTABLE="mitgcmuv_ad"
1099 elif test "x$OADM" = xt ; then
1100 code_dir=code_oad
1101 inputdir=input_oad
1102 ref_outp="output_oadm.txt"
1103 EXECUTABLE="mitgcmuv_ad"
1104 else
1105 code_dir=code
1106 inputdir=input
1107 ref_outp="output.txt"
1108 EXECUTABLE="mitgcmuv"
1109 fi
1110
1111 xx=`echo $TESTDIRS | awk '{print $1}'`
1112 if test "x$TESTDIRS" = x ; then
1113 LIST=`scandirs results/$ref_outp`
1114 elif test $xx = 'start_from' ; then
1115 xx=`echo $TESTDIRS | awk '{print $2}'`
1116 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1117 else
1118 #- expand group of experiments:
1119 LIST=" "
1120 for xx in $TESTDIRS
1121 do
1122 case $xx in
1123 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1124 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1125 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1126 ;;
1127 'tutorials')
1128 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1129 *) LIST=${LIST}" "$xx ;;
1130 esac
1131 done
1132 fi
1133 #echo 'LIST='${LIST}'<'
1134 #- skip dirs, remove duplicate and non-directory:
1135 TESTDIRS=" "
1136 count=0
1137 for xx in $LIST
1138 do
1139 yy=`echo $SKIPDIRS | grep -c $xx`
1140 if test $yy = 0 ; then
1141 if test -d $xx ; then
1142 yy=`echo $TESTDIRS | grep -c $xx`
1143 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1144 else count=1 ;
1145 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1146 fi
1147 else
1148 if test $count = 1 ; then echo -n ", \"$xx\""
1149 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1150 fi
1151 fi
1152 done
1153 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1154 #echo 'TESTDIRS='${TESTDIRS}'<'
1155
1156 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1157 OPTFILE=$MITGCM_OF
1158 fi
1159
1160 LOC_MFILE='tr_mpi_mfile'
1161 RUNLOG="run.tr_log"
1162 OUTPUTFILE=$ref_outp
1163 if test "x$COMMAND" = x ; then
1164 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1165 fi
1166 if test "x$MPI" != x0 ; then
1167 OUTPUTFILE="STDOUT.0000"
1168 fi
1169
1170 echo "OK (COMMAND= $COMMAND )"
1171
1172 # set the Default List of output variables to be checked:
1173 # (use default or load experiment-specific list from file "tr_checklist")
1174 # content : 1rst = main variable used to decide if it pass or FAIL
1175 # others = number of matching digits to be printed in summary.txt
1176 if test "x$ADM" = x -a "x$OADM" = x; then
1177 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1178 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1179 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1180 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1181 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1182 else
1183 DEF_CHECK_LIST='Grad Cost Grad'
1184 EMPTY_RESULTS='.. ..'
1185 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1186 fi
1187
1188 # create the FORTRAN comparison code
1189 if test -x tr_cmpnum ; then
1190 echo "skipping comparison code build"
1191 else
1192 createcodelet
1193 fi
1194
1195 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1196 if test "x$ADDRESSES" = x ; then
1197 echo "skipping mpack build"
1198 else
1199 build_mpack
1200 fi
1201
1202 # Create a uniquely named directory to store results
1203 CMDLINE=$0
1204 for xx in "$@" ; do nw=`echo $xx | wc -w`
1205 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1206 else CMDLINE="$CMDLINE '$xx'" ; fi
1207 done
1208 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1209 MACH=`hostname`
1210 UNAMEA=`uname -a`
1211 DATE=`date +%Y%m%d`
1212 BASE="tr_"$MACH"_"$DATE"_"
1213 if test "x$OUTDIR" != x ; then
1214 BASE="tr_"$OUTDIR"_"$DATE"_"
1215 else
1216 short_name=`hostname | sed 's/\..*$//'`
1217 BASE="tr_"$short_name"_"$DATE"_"
1218 fi
1219 DNUM=0
1220 DRESULTS="$BASE$DNUM"
1221 while test -e $DRESULTS ; do
1222 DNUM=$(( $DNUM + 1 ))
1223 DRESULTS="$BASE$DNUM"
1224 done
1225 mkdir $DRESULTS
1226 RETVAL=$?
1227 if test "x$RETVAL" != x0 ; then
1228 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1229 exit 1
1230 fi
1231 SUMMARY="$DRESULTS/summary.txt"
1232 start_date=`date`
1233 echo $start_date > $SUMMARY
1234 echo 'run:' $CMDLINE >> $SUMMARY
1235 echo 'on :' $UNAMEA >> $SUMMARY
1236
1237 of_path=
1238 if test "x$OPTFILE" != xNONE ; then
1239 if test -r $OPTFILE ; then
1240 # get the path
1241 path=${OPTFILE%/*}
1242 if test "x$path" = x ; then
1243 of_path=`pwd`
1244 else
1245 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1246 fi
1247 file=${OPTFILE##*/}
1248 OPTFILE=$of_path/$file
1249 cp $OPTFILE $DRESULTS
1250 echo >> $SUMMARY
1251 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1252 else
1253 echo | tee $SUMMARY
1254 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1255 exit 1
1256 fi
1257 else
1258 echo >> $SUMMARY
1259 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1260 #-note: to be filled later after 1rst run
1261 fi
1262 echo
1263 echo >> $SUMMARY
1264 if test "x$ADM" = x -a "x$OADM" = x; then
1265 if [ $MATCH_CRIT -lt 10 ] ;
1266 then line_0="default "$MATCH_CRIT ;
1267 else line_0="default "$MATCH_CRIT ; fi
1268 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1269 line_1="G D M c m s m s m s m s"
1270 line_2="E p a R g m m e . m m e . m m e . m m e ."
1271 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1272 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1273 for ii in $PTRACERS_NUM ; do
1274 line_0="$line_0 --PTR 0"$ii"--"
1275 line_1="$line_1 m s"
1276 line_2="$line_2 m m e ."
1277 line_3="$line_3 i a a d"
1278 line_4="$line_4 n x n ."
1279 done
1280 echo "$line_0" | tee -a $SUMMARY
1281 echo "$line_1" | tee -a $SUMMARY
1282 echo "$line_2" | tee -a $SUMMARY
1283 echo "$line_3" | tee -a $SUMMARY
1284 echo "$line_4" | tee -a $SUMMARY
1285 echo " " | tee -a $SUMMARY
1286 else
1287 echo "ADJOINT=true" >> $SUMMARY
1288 echo >> $SUMMARY
1289 if [ $MATCH_CRIT -lt 10 ] ;
1290 then line_0="default "$MATCH_CRIT ;
1291 else line_0="default "$MATCH_CRIT ; fi
1292 echo "$line_0" | tee -a $SUMMARY
1293 cat << EOF | tee -a $SUMMARY
1294 G D M C G
1295 E p a R o r
1296 N n k u s a
1297 2 d e n t d
1298
1299 EOF
1300 fi
1301 echo "-------------------------------------------------------------------------------"
1302
1303 # ...and each test directory...
1304 for dir in $TESTDIRS ; do
1305
1306 # set builddir & rundir:
1307 builddir="build"
1308 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1309 rundir="run"
1310 pfxdir="tr_$rundir"
1311 if test ! -d $dir/$rundir ; then
1312 rundir=$builddir
1313 fi
1314 CODE_DIR=$dir/$code_dir
1315 BUILD_DIR=$dir/$builddir
1316
1317 # Cleanup only!
1318 if test "x$CLEANUP" = xt ; then
1319 echo -n ' --- dir:' $BUILD_DIR ': '
1320 makeclean $BUILD_DIR
1321 ( cd $BUILD_DIR
1322 rm -f $EXECUTABLE *.bak
1323 rm -f genmake_state genmake_*optfile genmake.log
1324 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1325 )
1326 if test -d $dir/$rundir/CVS ; then
1327 echo -n ' --- dir:' $dir/$rundir ': '
1328 run_clean $dir/$rundir
1329 fi
1330 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1331 ttd=`echo $trdir | wc -w`
1332 if test $ttd != 0 ; then
1333 echo ' --- rm dir:' $trdir
1334 ( cd $dir ; rm -rf $trdir )
1335 fi
1336 continue
1337 fi
1338
1339 # Verify that the testdir exists and contains previous
1340 # results in the correct location--or skip this directory!
1341 fout=$dir"/results/"$ref_outp
1342 if test ! -r $fout ; then
1343 echo "can't read \"$fout\" -- skipping $dir"
1344 continue
1345 fi
1346
1347 # Check for specific files for particular type of run
1348
1349 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1350 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1351 continue
1352 fi
1353 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1354 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1355 continue
1356 fi
1357
1358 if test "x$MPI" != "x0" ; then
1359 prefer_X=0
1360 if test "x$MULTI_THREAD" = "xt" ; then
1361 retv=`check_eedata $dir"/input/eedata.mth"`
1362 if test $retv = 1 ; then prefer_X=1 ; fi
1363 fi
1364 #- create new SIZE.h with no more than '$MPI' Procs
1365 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $prefer_X
1366 LOC_NPROC=$?
1367 ( cd $BUILD_DIR
1368 if test -r SIZE.h.mpi ; then
1369 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1370 else RETVAL=1
1371 fi
1372 if test "x$RETVAL" = x0 ; then
1373 rm -f tr_size.mpi
1374 else
1375 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1376 fi
1377 )
1378 if test "x$MPI_MFILE" != x ; then
1379 #- create new MPI machine-file with the right number of Procs
1380 rm -f $LOC_MFILE
1381 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1382 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1383 if [ $nl -lt $LOC_NPROC ] ; then
1384 rm -f $LOC_MFILE
1385 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1386 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1387 fi
1388 if [ $verbose -gt 1 ]; then
1389 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1390 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1391 fi
1392 fi
1393 if test "x$MULTI_THREAD" = "xt" ; then
1394 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1395 if test $retv != 0 ; then
1396 echo "input/eedata.mth tiling misfit -- skipping $dir"
1397 continue
1398 fi
1399 fi
1400 fi
1401
1402 # Check whether there are "extra runs" for this testdir
1403 extra_runs=
1404 if test "x$NORUN" = xf ; then
1405 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1406 fi
1407 #echo "ex_run_dirs='$ex_run_dirs'"
1408 for exd in $ex_run_dirs ; do
1409 name=`echo $exd | sed -e "s/$inputdir\.//"`
1410 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1411 outf="$dir/results/$refExOut"
1412 if test -f $outf -a -r $outf ; then
1413 if test "x$MULTI_THREAD" = "xt" ; then
1414 if test -r $dir"/"$exd"/eedata.mth" ; then
1415 if test "x$MPI" = "x0" ; then
1416 extra_runs="$extra_runs $name"
1417 else
1418 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1419 if test $retv = 0 ; then
1420 extra_runs="$extra_runs $name"
1421 else
1422 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1423 fi
1424 fi
1425 #else echo $dir"/"$exd"/eedata.mth: not found"
1426 fi
1427 else
1428 extra_runs="$extra_runs $name"
1429 fi
1430 fi
1431 done
1432
1433 echo
1434 if test "x$extra_runs" = "x" ; then
1435 echo "Experiment: $dir"
1436 else
1437 echo "Experiment: $dir ; extra_runs=$extra_runs"
1438 fi
1439 echo
1440 unset genmake makedepend make run
1441 results=$EMPTY_RESULTS
1442
1443 # Create an output dir & summary.txt file for each tested experiment (tdir)
1444 locDIR=$DRESULTS"/"$dir
1445 mkdir $locDIR
1446 #- report to this experiment local summary file ---
1447 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1448 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1449 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1450 CDIR=`pwd`"/$locDIR"
1451
1452 if test "x$NORUN" = xt ; then
1453 run=N
1454 genmakemodel $dir/$builddir && genmake=Y \
1455 && makeclean $dir/$builddir \
1456 && symlink_mpifiles $dir $code_dir $builddir \
1457 && makedependmodel $dir/$builddir && makedepend=Y \
1458 && makemodel $dir/$builddir && make=Y
1459 else
1460 genmakemodel $dir/$builddir && genmake=Y \
1461 && makeclean $dir/$builddir \
1462 && symlink_mpifiles $dir $code_dir $builddir \
1463 && makedependmodel $dir/$builddir && makedepend=Y \
1464 && makemodel $dir/$builddir && make=Y \
1465 && run_clean $dir/$rundir \
1466 && linkdata $dir/$rundir $inputdir \
1467 && runmodel $dir/$rundir && run=Y \
1468 && results=`testoutput_run $dir $rundir $ref_outp`
1469 fi
1470 #echo "results='$results'"
1471
1472 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1473 echo 1>&2
1474 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1475 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1476
1477 for ex in $extra_runs ; do
1478 unset run
1479 results=$EMPTY_RESULTS
1480 # reference output file
1481 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1482 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1483 locDIR=$DRESULTS"/"$dir"."$ex
1484 mkdir $locDIR
1485 #- report to this experiment local summary file ---
1486 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1487 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1488 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1489 CDIR=`pwd`"/$locDIR"
1490 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1491 run_clean $dir/$pfxdir.$ex
1492 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1493 runmodel $dir/$pfxdir.$ex && run=Y \
1494 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1495 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1496 fres="$fres.$ex"
1497 echo 1>&2
1498 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1499 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1500 if test "x$POSTCLEAN" = x2 ; then
1501 run_clean $dir/$pfxdir.$ex
1502 fi
1503 done
1504
1505 if test -f $DRESULTS"/"genmake_state ; then : ; else
1506 if test -f $dir/$builddir/Makefile ; then
1507 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1508 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1509 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1510 echo " $mkOpt" >> $DRESULTS/genmake_state
1511 if test "x$OPTFILE" = xNONE ; then
1512 eval $mkOpt
1513 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1514 $SUMMARY > tr_0.tmp_log
1515 RETVAL=$?
1516 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1517 cp tr_0.tmp_log $SUMMARY
1518 else rm -f tr_0.tmp_log
1519 fi
1520 fi
1521 gmkLog=$dir/$builddir/genmake.log
1522 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1523 RETVAL=$?
1524 if test "x$RETVAL" = x0 ; then
1525 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1526 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1527 | grep -v '^... compiler version ' > tr_1.tmp_log
1528 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1529 >> $DRESULTS/genmake_state
1530 rm -f tr_1.tmp_log
1531 fi
1532 fi
1533 fi
1534 #postclean $dir/$builddir
1535 if test "x$POSTCLEAN" = x2 ; then
1536 makeclean $dir/$builddir \
1537 && run_clean $dir/$rundir
1538 fi
1539 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1540
1541 echo "-------------------------------------------------------------------------------"
1542
1543 done
1544
1545 printf "Start time: " >> $SUMMARY
1546 echo "$start_date" >> $SUMMARY
1547 printf "End time: " >> $SUMMARY
1548 date >> $SUMMARY
1549
1550 # If addresses were supplied and mpack built successfully, then try
1551 # to send email using mpack.
1552 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1553 echo "No results email was sent."
1554 else
1555 if test "x$HAVE_MPACK" = xt ; then
1556 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1557 && gzip $DRESULTS".tar" \
1558 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1559 RETVAL=$?
1560 if test "x$RETVAL" != x0 ; then
1561 echo
1562 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1563 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1564 echo " summary of results from the directory \"$DRESULTS\"."
1565 echo
1566 else
1567 echo
1568 echo "An email containing results was sent to the following addresses:"
1569 echo " \"$ADDRESSES\""
1570 echo
1571 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1572 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1573 fi
1574 fi
1575 fi
1576
1577 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1578 rm -f tr_cmpnum.c tr_cmpnum
1579 fi
1580
1581 if test "x$CLEANUP" != xt ; then
1582 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1583 if test -e tr_out.txt ; then
1584 mv tr_out.txt tr_out.txt.old
1585 fi
1586 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1587 fi
1588
1589 if test "x$DELDIR" = xt ; then
1590 rm -rf $DRESULTS
1591 fi

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