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Revision 1.160 - (show annotations) (download)
Tue Mar 29 11:51:20 2011 UTC (13 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint62w, checkpoint62v
Changes since 1.159: +4 -2 lines
change run_clean to remove executable only if sym-link (a fix for the case
 where rundir = build)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.159 2011/03/29 02:20:22 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
19 echo " (DEF=\"-ieee\")"
20 echo " (-gsl) compile with \"-gsl\" flag"
21 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
22 echo " (-optfile|-of) STRING list of optfiles to use"
23 echo " (-addr|-a) STRING list of email recipients"
24 echo " (DEF=\"\" no email is sent)"
25 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
26 echo " (DEF=\"../tools/mpack-1.6\")"
27 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
28 echo " (recognized groups: basic, tutorials)"
29 echo " (DEF=\"\" which test all)"
30 echo " (if list= 'start_from THIS_EXP' then"
31 echo " test THIS_EXP + all the following)"
32 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
33 echo " (DEF=\"\" which test all)"
34 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
35 echo " Bourne-compatible \"sh\" shell"
36 echo " (DEF=\"\" for \"bash\")"
37 echo " (-adm|-ad) perform an adjoint run"
38 echo " (-oad) perform an OpenAD adjoint run"
39 echo " (-command|-c) STRING command to run"
40 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
41 echo " (-make|-m) STRING command to use for \"make\""
42 echo " (DEF=\"make\")"
43 echo " (-odir) STRING used to build output directory name"
44 echo " (DEF=\"hostname\")"
45 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
46 # echo " (DEF=\"1 2 3 4 5\")"
47 echo " (-match) NUMBER Matching Criteria (number of digits)"
48 echo " (DEF=\"$MATCH_CRIT\")"
49 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
50 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
51 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
52 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
53 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
54 echo " (-nogenmake|-ng) skip the genmake stage"
55 echo " (-noclean|-nc) skip the \"make clean\" stage"
56 echo " (-nodepend|-nd) skip the \"make depend\" stage"
57 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
58 echo " (-deloutp|-do) delete output files after successful run"
59 echo " (-deldir|-dd) on success, delete the output directory"
60 echo " (-ts) provide timing information per timestep"
61 echo " (-papis) provide MFlop/s per timestep using PAPI"
62 echo " (-pcls) provide MFlop/s per timestep using PCL"
63 echo
64 echo "and where STRING can be a whitespace-delimited list"
65 echo "such as:"
66 echo
67 echo " -t 'exp0 exp2 exp3' "
68 echo " -addr='abc@123.com testing@home.org'"
69 echo
70 echo "provided that the expression is properly quoted within the current"
71 echo "shell (note the use of single quotes to protect white space)."
72 echo
73 exit 1
74 }
75
76 # build the mpack utility
77 build_mpack()
78 {
79 printf "building the mpack utility... "
80 MPACK="$MPACKDIR/mpack"
81 if test ! -x $MPACK ; then
82 if test ! -d $MPACKDIR ; then
83 echo
84 echo "Error: can't find \"$MPACKDIR\""
85 echo " are you sure this program is being run in the correct "
86 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
87 echo
88 HAVE_MPACK=f
89 fi
90 if test "x$CC" = x ; then
91 export CC=cc
92 fi
93 printf "building mpack (using CC=$CC)... "
94 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
95 RETVAL=$?
96 if test "x$RETVAL" != x0 ; then
97 echo
98 echo "Error building the mpack tools at: $MPACK_DIR"
99 echo
100 HAVE_MPACK=f
101 else
102 rm -f tr_build_mpack.out
103 HAVE_MPACK=t
104 echo "done"
105 fi
106 else
107 HAVE_MPACK=t
108 echo "already exist"
109 fi
110 }
111
112 testoutput_var()
113 {
114 # testoutput_var dir s1 label subdir reference_output
115 #
116 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
117 # with same output from reference file $dir/results/$reference_output
118 # using search strings s1 and text label
119
120 if [ $debug -gt 0 ]; then
121 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
122 fi
123 if [ -r $1/$4/$OUTPUTFILE ]; then
124 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
125 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
126 if [ $lncntA -lt 2 ]; then
127 if [ $verbose -gt 0 ]; then
128 echo Not enough lines of output when searching for "$2" 1>&2
129 fi
130 return 99
131 fi
132 else
133 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
134 return 99
135 fi
136 if [ $debug -gt 0 ]; then
137 echo testoutput_var: grep "$2" $1/results/$5 1>&2
138 fi
139 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
140 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
141 if [ $lncntB -lt 2 ]; then
142 if [ $verbose -gt 0 ]; then
143 echo Not enough lines of output when searching for "$2" 1>&2
144 fi
145 return 99
146 fi
147 if [ $lncntA -ne $lncntB ]; then
148 if [ $verbose -gt 0 ]; then
149 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
150 fi
151 return 99
152 fi
153 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
154 if [ $has_nan -gt 0 ] ; then
155 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
156 return 99
157 fi
158 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
159 if [ $has_inf -gt 0 ] ; then
160 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
161 return 99
162 fi
163 if [ $debug -gt 0 ]; then
164 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
165 fi
166 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
167 if [ $debug -gt 0 ]; then
168 echo testoutput_var: compare_lines 1>&2
169 fi
170 if [ $verbose -gt 1 ]; then
171 cat tmp3.txt 1>&2
172 fi
173 echo "-1" >> tmp3.txt
174 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
175 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
176 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
177 if [ $digits_of_similarity -eq 99 ]; then
178 if [ $verbose -gt 0 ]; then
179 echo testoutput_var: No comparison was available for \"$3\" 1>&2
180 fi
181 digits_of_similarity=99
182 else
183 if [ $verbose -gt 0 ]; then
184 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
185 fi
186 fi
187 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
188
189 return $digits_of_similarity
190 }
191
192 testoutput_run()
193 {
194 # testoutput_run directory subdir reference_output
195 #
196 # test output from 1 run in "directory"
197 # --> same processing for adjoint & forward test
198 # default list of output variables to be checked:
199 # 1rst : main variable used to decide if it pass or FAIL
200 # others : number of matching digits to be printed in summary.txt
201 listChk=$DEF_CHECK_LIST
202 # load experiment-specific list from file "tr_checklist" (if it exist)
203 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
204 sVar=`echo $listChk | awk '{print $1}'`
205 # remove 1rst var and expand the list: + => min max mean s.d
206 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
207 | sed 's/+//g' | sed "s/^$sVar//"`
208 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
209 # check for ptracer output in reference_output file :
210 outpref=$1/results/$3
211 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
212 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
213 for ii in $PTRACERS_NUM ; do
214 ptrfound=0
215 for jj in $ptr_mon ; do
216 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
217 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
218 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
219 done
220 if test $ptrfound = '1' ; then
221 eval "HAVE_PTR0"$ii"=t"
222 else
223 eval "HAVE_PTR0"$ii"=f"
224 if test "x$ADM" = x -a "x$OADM" = x; then
225 # remove this ptr from the list of output variable to check
226 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
227 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
228 fi
229 fi
230 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
231 done
232 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
233 if test $tst != 1 ; then
234 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
235 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
236 echo "==> WARNING: in checked list:" $listVar 1>&2
237 #- put it back once:
238 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
239 fi
240 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
241 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
242 #---
243 allargs=""
244 for xx in $listVar
245 do
246 case $xx in
247 'PS') if [ $debug -gt 0 ]
248 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
249 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
250 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
251 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
252 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
253 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
254 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
255 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
256 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
257 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
258 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
259 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
260 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
261 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
262 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
263 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
264 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
265 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
266 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
267 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
268 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
269 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
270 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
271 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
272 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
273 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
274 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
275 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
276 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
277 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
278 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
279 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
280 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
281 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
282 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
283 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
284 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
285 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
286 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
287 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
288 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
289 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
290 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
291 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
292 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
293 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
294 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
295 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
296 esac
297 if test $xx = $sVar
298 then allargs="$allargs > $yy <"
299 else allargs="$allargs $yy"
300 fi
301 done
302
303 nbVar=`echo $listVar | awk '{print NF}'`
304 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
305 #-- fill line (up to standard length) with dot:
306 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
307 echo $allargs $adNul
308 else
309 echo $allargs
310 fi
311 # <-- same processing for adjoint & forward test
312 }
313
314 genmakemodel()
315 {
316 # genmakemodel directory
317 if test "x$NOGENMAKE" = xt ; then
318 echo "genmake skipped!"
319 else
320 if test "x$BASH" = x ; then
321 GENMAKE2="../../../tools/genmake2"
322 else
323 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
324 fi
325 (
326 cd $1;
327 command="$GENMAKE2 -ds -m $MAKE"
328 if test "x$MKDEPEND" != x ; then
329 command="$command -makedepend=$MKDEPEND"
330 fi
331 if test "x$ADM" = xt ; then
332 command="$command --mods=../code_ad"
333 elif test "x$OADM" = xt ; then
334 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
335 else
336 command="$command -mods=../code"
337 fi
338 if test "x$OPTFILE" != xNONE ; then
339 command="$command -optfile=$OPTFILE"
340 fi
341 if test "x$IEEE" != x ; then
342 command="$command -ieee"
343 fi
344 if test "x$GSL" = xt ; then
345 command="$command -gsl"
346 fi
347 if test "x$MPI" != x0 ; then
348 command="$command -mpi"
349 fi
350 if test "x$MULTI_THREAD" = xt ; then
351 #- run multi-threaded using OpenMP:
352 command="$command -omp"
353 fi
354 if test "x$USE_R4" = xt ; then
355 command="$command -use_r4"
356 fi
357 if test "x$TS" = xt ; then
358 command="$command -ts"
359 fi
360 if test "x$PAPIS" = xt ; then
361 command="$command -papis"
362 else
363 if test "x$PCLS" = xt ; then
364 command="$command -pcls"
365 fi
366 fi
367 printf 'genmake ... '
368 eval $command > genmake.tr_log 2>&1
369 RETVAL=$?
370 # Reduce the size of the testing emails!
371 head -100 Makefile > $CDIR/Makefile_head
372 if test "x$RETVAL" != x0 ; then
373 tail genmake.tr_log
374 echo "genmakemodel: genmake failed"
375 cp genmake.log genmake_* genmake.tr_log $CDIR
376 return 1
377 else
378 echo "successful"
379 fi
380 )
381 fi
382 }
383
384 makeclean()
385 {
386 # makeclean directory
387 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
388 if test "x$NOCLEAN" = xt ; then
389 echo "make Clean skipped!"
390 else
391 (
392 cd $1;
393 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
394 if test -r Makefile ; then
395 printf 'clean build-dir: make Clean ... '
396 $MAKE Clean >> make.tr_log 2>&1
397 RETVAL=$?
398 if test "x$RETVAL" != x0 ; then
399 tail make.tr_log
400 echo "makeclean: \"make Clean\" failed"
401 cp make.tr_log genmake.log genmake.tr_log $CDIR
402 return 1
403 fi
404 echo successful
405 else
406 echo ''
407 fi
408 exit 0
409 )
410 fi
411 }
412
413 run_clean()
414 {
415 # run_clean directory
416 if test "x$NOCLEAN" = xt ; then
417 echo "run_clean skipped!"
418 else
419 (
420 cd $1;
421 printf 'clean run-dir ... '
422 # part of what is done after "make clean" when doing "make CLEAN"
423 find . -name "*.meta" -exec rm {} \;
424 find . -name "*.data" -exec rm {} \;
425 find . -name "fort.*" -exec rm {} \;
426 find . -type l -exec rm {} \;
427 #- should remove executable only if sym-link (and above does it)
428 #rm -f $EXECUTABLE
429 rm -f $RUNLOG *.txt STD* *diagnostics.log datetime
430 rm -rf mnc_test_*
431 rm -f *_MIT_CE_000.opt0000 costfunction*0000
432 echo successful
433 exit 0
434 )
435 fi
436 }
437
438 makedependmodel()
439 {
440 # makedependmodel directory
441 if test "x$NODEPEND" = xt ; then
442 echo "make depend skipped!"
443 else
444 (
445 cd $1;
446 printf 'make depend ... '
447 $MAKE depend >> make.tr_log 2>&1
448 RETVAL=$?
449 if test "x$RETVAL" != x0 ; then
450 tail make.tr_log
451 echo "makedependmodel: make depend failed"
452 cp make.tr_log genmake.log genmake.tr_log $CDIR
453 return 1
454 else
455 echo successful
456 fi
457 )
458 fi
459 }
460
461 makemodel()
462 {
463 # makemodel directory
464 (
465 mk_fail=0
466 if test "x$NOMAKE" = xt ; then
467 cd $1;
468 if test -x $EXECUTABLE ; then
469 echo "make skipped!"
470 else
471 echo "no executable!"
472 mk_fail=3
473 fi
474 else
475 cd $1;
476 if test -r Makefile ; then
477 printf 'make ... '
478 if test "x$ADM" = xt ; then
479 $MAKE adall >> make.tr_log 2>&1
480 elif test "x$OADM" = xt ; then
481 $MAKE adAll >> make.tr_log 2>&1
482 else
483 if test "x$JOBS" = x ; then
484 $MAKE >> make.tr_log 2>&1
485 else
486 $MAKE -j $JOBS >> make.tr_log 2>&1
487 fi
488 fi
489 RETVAL=$?
490 if test "x$RETVAL" != x0 ; then
491 tail make.tr_log
492 echo failed
493 cp make.tr_log genmake.log genmake.tr_log $CDIR
494 rm -f $EXECUTABLE
495 mk_fail=1
496 else
497 echo successful
498 fi
499 else
500 echo "no Makefile !"
501 mk_fail=2
502 fi
503 fi
504 if test "x$ADM" = xt -a -f taf_ad.log ; then
505 head -1 taf_ad.log >> $CDIR"/summary.txt"
506 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
507 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
508 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
509 >> $CDIR"/summary.txt"
510 fi
511 if test $mk_fail != 0 ; then return $mk_fail ; fi
512 )
513 }
514
515 mk_mpi_size()
516 {
517 # mk_mpi_size input_file output_file proc_Nb
518 #
519 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
520 # for an MPI build with no more than proc_Nb processors ;
521 # return the effective number of processors.
522
523 inp=$1
524 out=$2
525 np=$3
526 tmp=TTT.$$
527
528 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
529 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
530 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
531 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
532
533 #- find the largest divisor of input_file proc Nb, but not larger than $np
534 pp=0
535 i=1
536 while [ $i -le $px ] ; do
537 if [ `expr $px % $i` -eq 0 ] ; then
538 j=1
539 while [ $j -le $py ] ; do
540 if [ `expr $py % $j` -eq 0 ] ; then
541 ij=`expr $i \* $j`
542 if [ $ij -gt $pp ] ; then
543 if [ $ij -le $np ] ; then
544 ix=$i ; jy=$j ; pp=$ij
545 #echo " ix,jy= $ix,$jy"
546 fi
547 fi
548 fi
549 j=`expr $j + 1`
550 done
551 fi
552 i=`expr $i + 1`
553 done
554
555 #- create new SIZE.h type file:
556 sx=`expr $sx \* $px / $ix`
557 sy=`expr $sy \* $py / $jy`
558 if [ $verbose -gt 1 ]; then
559 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
560 fi
561 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
562 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
563 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
564 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
565 rm -f $tmp
566 return $pp
567 }
568
569 symlink_mpifiles()
570 {
571 # Put special links so that MPI specific files are used
572 # This MUST be invoked between makeclean and makelinks because
573 # the Makefile will link to non-mpi files by default
574
575 dir=$1
576 code_dir=$2
577 build_dir=$dir/$3
578
579 # These are files that should replace their counter-part when using -mpi
580 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
581
582 for ii in $MPI_FILES ; do
583 i=`echo $ii | sed 's:^\./::'`
584 name=`echo $i | sed 's:_mpi::'`
585 file="../$code_dir/$i"
586 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
587
588 # Is this an MPI run?
589 if test "x$MPI" = x0 ; then
590 # NO: We undo any _mpi symbolically linked files
591 if test -L $build_dir/$name ; then
592 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
593 RETVAL=$?
594 if test "x$RETVAL" = x0 ; then
595 if [ $verbose -gt 1 ]; then
596 echo " Un-linking $name from ../$code_dir" ; fi
597 rm -f $build_dir/$name
598 fi
599 fi
600 else
601 # YES: We symbolically link these files to the build
602 # dir so long as there is no real file in place
603 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
604 RETVAL=$?
605 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
606 if test "x$RETVAL" != x0 ; then
607 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
608 if test ! -r $build_dir/$name ; then
609 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
610 (cd $build_dir; ln -sf $file $name)
611 fi
612 fi
613 fi
614 done
615 }
616
617 linkdata()
618 {
619 # linkdata run_dir input_dir_1 input_dir_2 ...
620 #
621 # symbolically link data files to run directory
622 if test -d $1 ; then
623 (
624 cd $1 ; shift
625 echo 'linkdata from dirs:' $*
626 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
627 for xx in $inpMPI ; do
628 if test -r "../"$1"/"$xx ; then
629 # found 1 _mpi sfx file in 1rst input dir and it is readable
630 yy=`echo $xx | sed 's:\.mpi$::'`
631 if test "x$MPI" = "x0" ; then
632 # not mpi test: remove symbolic link
633 if test -h $yy ; then rm -f $yy ; fi
634 else
635 # mpi test: remove symbolic link & link .mpi sfx file
636 if test -h $yy ; then rm -f $yy ; fi
637 if test ! -r $yy ; then
638 ln -sf "../"$1"/"$xx $yy ;
639 printf " $xx" 1>&2
640 fi
641 fi
642 fi
643 done
644 if test -r "../"$1"/eedata.mth" ; then
645 # found eedata.mth in 1rst input dir and it is readable
646 if test "x$MULTI_THREAD" = "xt" ; then
647 # multi-threaded test: remove symbolic link & link eedata.mth
648 if test -h eedata ; then rm -f eedata ; fi
649 if test ! -r eedata ; then
650 ln -sf "../"$1"/eedata.mth" eedata ;
651 printf ' eedata.mth' 1>&2
652 fi
653 else
654 # not multi-threaded test: remove eedata symbolic link
655 if test -h eedata ; then rm -f eedata ; fi
656 fi
657 fi
658 prevDir='NONE'
659 for ldir in $* ; do
660 if test -d "../"$ldir -a $ldir != $prevDir ; then
661 printf " ldir=${ldir}:" 1>&2
662 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
663 for i in $files ; do
664 if test ! -d "../"$ldir/$i ; then
665 if test ! -r $i ; then
666 printf ' '$i 1>&2
667 ln -sf "../"$ldir"/"$i $i
668 fi
669 fi
670 done
671 printf ' ;' 1>&2
672 if test -x "../"$ldir"/"prepare_run ; then
673 "../"$ldir"/"prepare_run 1>&2
674 else
675 echo '' 1>&2
676 fi
677 fi
678 prevDir=$ldir
679 done
680 )
681 fi
682 }
683
684 runmodel()
685 {
686 # runmodel directory
687 #
688 # runs $COMMAND in "directory"
689 # (where "$COMMAND" is relative to "directory")
690 (
691 cd $1
692 printf 'runmodel in %s ... ' $1
693 if test "x$MPI" != x0 ; then
694 #- adjust the MPI run command with the right number of Procs
695 #echo '' ; echo " COMMAND='$COMMAND'"
696 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
697 if test "x$MPI_MFILE" != x ; then
698 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
699 fi
700 #echo " COMMAND='$COMMAND'"
701 fi
702 if test -L $EXECUTABLE ; then
703 if test -x "../"$builddir"/"$EXECUTABLE ; then
704 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
705 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
706 else rm -f $EXECUTABLE
707 fi
708 fi
709 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
710 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
711 ln -sf "../"$builddir"/"$EXECUTABLE .
712 fi
713 if test ! -x $EXECUTABLE ; then
714 rm -f $RUNLOG ; touch $RUNLOG
715 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
716 echo " no executable:" $EXECUTABLE >> $RUNLOG
717 RETVAL=8
718 ENDVAL=-1
719 else
720 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
721 # output do not exist or is older than executable:
722 rm -f $RUNLOG ; touch $RUNLOG
723 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
724 ( eval $COMMAND ) >> $RUNLOG 2>&1
725 RETVAL=$?
726 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
727 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
728 find . -name "*.meta" -exec rm {} \;
729 find . -name "*.data" -exec rm {} \;
730 rm -rf mnc_test_*
731 fi
732 else
733 RETVAL=0
734 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
735 touch $RUNLOG
736 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
737 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
738 fi
739 fi
740 rm -f run.log_tmp
741 #- in all cases where OutputFile exists, report SIZE (and AD time)
742 if test -f $OUTPUTFILE ; then
743 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
744 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
745 if test "x$ADM" = xt ; then
746 grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt"
747 fi
748 fi
749 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
750 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
751 echo successful
752 printf '=> output from running in %s :\n' $1 1>&2
753 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
754 return 0
755 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
756 #-- for some weird cases (run is finihed but with error code)
757 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
758 printf '=> output from running in %s :\n' $1 1>&2
759 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
760 return 0
761 else
762 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
763 printf '=> output from running in %s :\n' $1 1>&2
764 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
765 cp $RUNLOG $CDIR"/"$RUNLOG
766 return 1
767 fi
768 )
769 }
770
771 createcodelet()
772 {
773 # create codelet for comparing model output
774
775 printf "creating the comparison code (using CC=$CC)... "
776 cat > tr_cmpnum.c <<EOF
777 #include <stdio.h>
778 #include <math.h>
779 int main( int argc, char** argv ) {
780 int linnum,cmplin,best,lncnt;
781 double a,b,abave,relerr;
782 best = -22;
783 lncnt = 0;
784 while( 1 & ( (lncnt+=1) < 999 ) ) {
785 scanf("%d", &linnum);
786 if (linnum == -1) break;
787 scanf("%lf", &a); scanf("%lf", &b);
788 abave = 0.5*(fabs(a)+fabs(b));
789 if ( abave == abave ) {
790 if (abave > 0.0) {
791 relerr=fabs(a-b)/abave;
792 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
793 else { cmplin = -16 ; }
794 best = (best > cmplin) ? best : cmplin; }
795 else { cmplin = -22 ; }
796 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
797 }
798 else {
799 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
800 break; }
801 }
802 if (lncnt == 999) best=-29;
803 if (linnum != -1) best=-99;
804 printf("%d\n", -best);
805 return 0;
806 }
807 EOF
808 $CC -o tr_cmpnum tr_cmpnum.c -lm
809
810 if [ -x ./tr_cmpnum ]; then
811 echo "OK"
812 return 0
813 else
814 echo
815 echo "ERROR: failed to compile comparison code -- please specify"
816 echo " a C compiler using the CC environment variable."
817 exit 1
818 fi
819 }
820
821 formatresults()
822 {
823 # formatresults expt genmake depend make run results*
824
825 nm=$1
826 printf '%s %s %s %s' $2 $3 $4 $5
827 shift; shift; shift; shift; shift;
828 listPrt=$@
829 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
830 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
831 printf '%3s' $listPrt
832 # line below does not work on hp-ux_ia64 : do those substitutions later on
833 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
834
835 if [ $xx = '..' ]; then
836 printf ' N/O '
837 elif [ $xx = '--' ]; then
838 printf ' N/O '
839 elif [ $xx = 99 ]; then
840 printf ' N/O '
841 else
842 if [ $xx -ge $MATCH_CRIT ]; then
843 printf ' pass'
844 else
845 printf ' FAIL'
846 fi
847 fi
848 printf ' %s' $nm
849 printf '\n'
850
851 }
852
853 scandirs()
854 {
855 if [ $# -eq 1 ]; then
856 for arg in * ; do
857 test -f $arg/$1 && echo $arg
858 done
859 else
860 echo $*
861 fi
862 }
863
864
865 check_eedata()
866 {
867 # check_eedata size.h eedata
868 if [ $# -eq 2 ] ; then
869 if test -f $1 -a -f $2 ; then
870 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
871 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
872 if test "x$nx" = x ; then
873 rx=10
874 else
875 rx=`expr $sx % $nx`
876 fi
877 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
878 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
879 if test "x$ny" = x ; then
880 ry=20
881 else
882 ry=`expr $sy % $ny`
883 fi
884 echo `expr $rx + $ry`
885 else
886 echo '-1'
887 fi
888 else
889 echo '-2'
890 fi
891
892 }
893
894 ###############################################################################
895
896
897 # Default properties
898 debug=0
899 verbose=1
900
901 IEEE=true
902 if test "x$MITGCM_IEEE" != x ; then
903 IEEE=$MITGCM_IEEE
904 fi
905 GSL=f
906
907 CLEANUP=f
908 NORUN=f
909 QUICK=f
910 NOMAKE=f
911 NOGENMAKE=f
912 NOCLEAN=f
913 NODEPEND=f
914 POSTCLEAN=0
915
916 BASH=
917 OPTFILE=NONE
918 ADDRESSES=
919 TESTDIRS=
920 SKIPDIRS=
921 MPACKDIR="../tools/mpack-1.6"
922 HAVE_MPACK=
923 MPACK=
924 COMMAND=
925 MKDEPEND=
926 if test "x$MAKE" = x ; then
927 MAKE=make
928 fi
929 if test "x$CC" = x ; then
930 CC=cc
931 fi
932 JOBS=
933 MPI=0
934 MPI_MFILE=
935 MULTI_THREAD=f
936 OUTDIR=
937 DELDIR=
938 USE_R4=
939
940 ADM=
941 OADM=
942
943 # list of pTracers to check for monitor output
944 PTRACERS_NUM="1 2 3 4 5"
945
946 MATCH_CRIT=10
947
948 printf "parsing options... "
949
950 ac_prev=
951 for ac_option ; do
952
953 # If the previous option needs an argument, assign it.
954 if test -n "$ac_prev"; then
955 eval "$ac_prev=\$ac_option"
956 ac_prev=
957 continue
958 fi
959
960 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
961
962 case $ac_option in
963
964 -help | --help | -h | --h) usage ;;
965
966 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
967 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
968
969 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
970 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
971 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
972 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
973
974 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
975 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
976 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
977 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
978
979 -bash | --bash | -b | --b) ac_prev=BASH ;;
980 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
981
982 -command | --command | -c | --c) ac_prev=COMMAND ;;
983 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
984
985 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
986 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
987
988 -make | --make | -m | --m) ac_prev=MAKE ;;
989 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
990
991 -odir | --odir) ac_prev=OUTDIR ;;
992 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
993
994 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
995 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
996
997 -match | --match ) ac_prev=MATCH_CRIT ;;
998 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
999
1000 -j | --j) ac_prev=JOBS ;;
1001 -j=* | --j=*) JOBS=$ac_optarg ;;
1002
1003 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1004
1005 -norun | --norun | -nr | --nr) NORUN=t ;;
1006 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1007 -quick | --quick | -q | --q) QUICK=t ;;
1008 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1009 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1010 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1011
1012 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1013 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1014
1015 -mpi | --mpi) MPI=2 ;;
1016 -MPI | --MPI) ac_prev=MPI ;;
1017 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1018
1019 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1020 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1021
1022 -mth) MULTI_THREAD=t ;;
1023
1024 -adm | -ad) ADM=t ;;
1025 -oad) OADM=t; NODEPEND=t ;;
1026
1027 -ieee) IEEE=true ;;
1028 -noieee) IEEE= ;;
1029 -gsl) GSL=t ;;
1030
1031 -verbose) verbose=2 ;;
1032 -debug) debug=1 ;;
1033 -quiet) verbose=0 ;;
1034
1035 -deldir | -dd) DELDIR=t ;;
1036
1037 -use_r4|-ur4) USE_R4=t ;;
1038
1039 -ts) TS=t;;
1040 -papis) PAPIS=t;;
1041 -pcls) PCL=t;;
1042
1043 -*) echo "Error: unrecognized option: "$ac_option
1044 usage ;;
1045 *) echo "Error: unrecognized argument: "$ac_option
1046 usage ;;
1047
1048 esac
1049
1050 done
1051
1052 if test "x$QUICK" = xt ; then
1053 NOGENMAKE=t
1054 NOCLEAN=t
1055 NODEPEND=t
1056 fi
1057
1058 #- check length of MPI machine file:
1059 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1060 if test -r $MPI_MFILE ; then
1061 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1062 if [ $nl -lt $MPI ] ; then
1063 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1064 usage
1065 fi
1066 if [ $verbose -gt 1 ]; then
1067 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1068 fi
1069 else
1070 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1071 usage
1072 fi
1073 fi
1074
1075 #- setting for forward or ADM testing
1076 if test "x$ADM" = xt ; then
1077 code_dir=code_ad
1078 inputdir=input_ad
1079 ref_outp="output_adm.txt"
1080 EXECUTABLE="mitgcmuv_ad"
1081 elif test "x$OADM" = xt ; then
1082 code_dir=code_oad
1083 inputdir=input_oad
1084 ref_outp="output_oadm.txt"
1085 EXECUTABLE="mitgcmuv_ad"
1086 else
1087 code_dir=code
1088 inputdir=input
1089 ref_outp="output.txt"
1090 EXECUTABLE="mitgcmuv"
1091 fi
1092
1093 xx=`echo $TESTDIRS | awk '{print $1}'`
1094 if test "x$TESTDIRS" = x ; then
1095 LIST=`scandirs results/$ref_outp`
1096 elif test $xx = 'start_from' ; then
1097 xx=`echo $TESTDIRS | awk '{print $2}'`
1098 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1099 else
1100 #- expand group of experiments:
1101 LIST=" "
1102 for xx in $TESTDIRS
1103 do
1104 case $xx in
1105 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1106 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1107 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1108 ;;
1109 'tutorials')
1110 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1111 *) LIST=${LIST}" "$xx ;;
1112 esac
1113 done
1114 fi
1115 #echo 'LIST='${LIST}'<'
1116 #- skip dirs, remove duplicate and non-directory:
1117 TESTDIRS=" "
1118 count=0
1119 for xx in $LIST
1120 do
1121 yy=`echo $SKIPDIRS | grep -c $xx`
1122 if test $yy = 0 ; then
1123 if test -d $xx ; then
1124 yy=`echo $TESTDIRS | grep -c $xx`
1125 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1126 else count=1 ;
1127 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1128 fi
1129 else
1130 if test $count = 1 ; then echo -n ", \"$xx\""
1131 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1132 fi
1133 fi
1134 done
1135 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1136 #echo 'TESTDIRS='${TESTDIRS}'<'
1137
1138 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1139 OPTFILE=$MITGCM_OF
1140 fi
1141
1142 LOC_MFILE='tr_mpi_mfile'
1143 RUNLOG="run.tr_log"
1144 OUTPUTFILE=$ref_outp
1145 if test "x$COMMAND" = x ; then
1146 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1147 fi
1148 if test "x$MPI" != x0 ; then
1149 OUTPUTFILE="STDOUT.0000"
1150 fi
1151
1152 echo "OK (COMMAND= $COMMAND )"
1153
1154 # set the Default List of output variables to be checked:
1155 # (use default or load experiment-specific list from file "tr_checklist")
1156 # content : 1rst = main variable used to decide if it pass or FAIL
1157 # others = number of matching digits to be printed in summary.txt
1158 if test "x$ADM" = x -a "x$OADM" = x; then
1159 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1160 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1161 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1162 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1163 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1164 else
1165 DEF_CHECK_LIST='Grad Cost Grad'
1166 EMPTY_RESULTS='.. ..'
1167 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1168 fi
1169
1170 # create the FORTRAN comparison code
1171 if test -x tr_cmpnum ; then
1172 echo "skipping comparison code build"
1173 else
1174 createcodelet
1175 fi
1176
1177 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1178 if test "x$ADDRESSES" = x ; then
1179 echo "skipping mpack build"
1180 else
1181 build_mpack
1182 fi
1183
1184 # Create a uniquely named directory to store results
1185 CMDLINE=$0
1186 for xx in "$@" ; do nw=`echo $xx | wc -w`
1187 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1188 else CMDLINE="$CMDLINE '$xx'" ; fi
1189 done
1190 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1191 MACH=`hostname`
1192 UNAMEA=`uname -a`
1193 DATE=`date +%Y%m%d`
1194 BASE="tr_"$MACH"_"$DATE"_"
1195 if test "x$OUTDIR" != x ; then
1196 BASE="tr_"$OUTDIR"_"$DATE"_"
1197 else
1198 short_name=`hostname | sed 's/\..*$//'`
1199 BASE="tr_"$short_name"_"$DATE"_"
1200 fi
1201 DNUM=0
1202 DRESULTS="$BASE$DNUM"
1203 while test -e $DRESULTS ; do
1204 DNUM=$(( $DNUM + 1 ))
1205 DRESULTS="$BASE$DNUM"
1206 done
1207 mkdir $DRESULTS
1208 RETVAL=$?
1209 if test "x$RETVAL" != x0 ; then
1210 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1211 exit 1
1212 fi
1213 SUMMARY="$DRESULTS/summary.txt"
1214 start_date=`date`
1215 echo $start_date > $SUMMARY
1216 echo 'run:' $CMDLINE >> $SUMMARY
1217 echo 'on :' $UNAMEA >> $SUMMARY
1218
1219 of_path=
1220 if test "x$OPTFILE" != xNONE ; then
1221 if test -r $OPTFILE ; then
1222 # get the path
1223 path=${OPTFILE%/*}
1224 if test "x$path" = x ; then
1225 of_path=`pwd`
1226 else
1227 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1228 fi
1229 file=${OPTFILE##*/}
1230 OPTFILE=$of_path/$file
1231 cp $OPTFILE $DRESULTS
1232 echo >> $SUMMARY
1233 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1234 else
1235 echo | tee $SUMMARY
1236 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1237 exit 1
1238 fi
1239 else
1240 echo >> $SUMMARY
1241 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1242 #-note: to be filled later after 1rst run
1243 fi
1244 echo
1245 echo >> $SUMMARY
1246 if test "x$ADM" = x -a "x$OADM" = x; then
1247 if [ $MATCH_CRIT -lt 10 ] ;
1248 then line_0="default "$MATCH_CRIT ;
1249 else line_0="default "$MATCH_CRIT ; fi
1250 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1251 line_1="G D M c m s m s m s m s"
1252 line_2="E p a R g m m e . m m e . m m e . m m e ."
1253 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1254 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1255 for ii in $PTRACERS_NUM ; do
1256 line_0="$line_0 --PTR 0"$ii"--"
1257 line_1="$line_1 m s"
1258 line_2="$line_2 m m e ."
1259 line_3="$line_3 i a a d"
1260 line_4="$line_4 n x n ."
1261 done
1262 echo "$line_0" | tee -a $SUMMARY
1263 echo "$line_1" | tee -a $SUMMARY
1264 echo "$line_2" | tee -a $SUMMARY
1265 echo "$line_3" | tee -a $SUMMARY
1266 echo "$line_4" | tee -a $SUMMARY
1267 echo " " | tee -a $SUMMARY
1268 else
1269 echo "ADJOINT=true" >> $SUMMARY
1270 echo >> $SUMMARY
1271 if [ $MATCH_CRIT -lt 10 ] ;
1272 then line_0="default "$MATCH_CRIT ;
1273 else line_0="default "$MATCH_CRIT ; fi
1274 echo "$line_0" | tee -a $SUMMARY
1275 cat << EOF | tee -a $SUMMARY
1276 G D M C G
1277 E p a R o r
1278 N n k u s a
1279 2 d e n t d
1280
1281 EOF
1282 fi
1283 echo "-------------------------------------------------------------------------------"
1284
1285 # ...and each test directory...
1286 for dir in $TESTDIRS ; do
1287
1288 # set builddir & rundir:
1289 builddir="build"
1290 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1291 rundir="run"
1292 pfxdir="tr_$rundir"
1293 if test ! -d $dir/$rundir ; then
1294 rundir=$builddir
1295 fi
1296 CODE_DIR=$dir/$code_dir
1297 BUILD_DIR=$dir/$builddir
1298
1299 # Cleanup only!
1300 if test "x$CLEANUP" = xt ; then
1301 echo -n ' --- dir:' $BUILD_DIR ': '
1302 makeclean $BUILD_DIR
1303 ( cd $BUILD_DIR
1304 rm -f $EXECUTABLE *.bak
1305 rm -f genmake_state genmake_*optfile genmake.log
1306 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1307 )
1308 if test -d $dir/$rundir/CVS ; then
1309 echo -n ' --- dir:' $dir/$rundir ': '
1310 run_clean $dir/$rundir
1311 fi
1312 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1313 ttd=`echo $trdir | wc -w`
1314 if test $ttd != 0 ; then
1315 echo ' --- rm dir:' $trdir
1316 ( cd $dir ; rm -rf $trdir )
1317 fi
1318 continue
1319 fi
1320
1321 # Verify that the testdir exists and contains previous
1322 # results in the correct location--or skip this directory!
1323 fout=$dir"/results/"$ref_outp
1324 if test ! -r $fout ; then
1325 echo "can't read \"$fout\" -- skipping $dir"
1326 continue
1327 fi
1328
1329 # Check for specific files for particular type of run
1330
1331 if test "x$MPI" != "x0" ; then
1332 if test -r $CODE_DIR"/SIZE.h_mpi" ; then
1333 #- create new SIZE.h with no more than '$MPI' Procs
1334 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI
1335 LOC_NPROC=$?
1336 ( cd $BUILD_DIR
1337 if test -r SIZE.h.mpi ; then
1338 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1339 else RETVAL=1
1340 fi
1341 if test "x$RETVAL" = x0 ; then
1342 rm -f tr_size.mpi
1343 else
1344 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1345 fi
1346 )
1347 else
1348 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1349 continue
1350 fi
1351 if test "x$MPI_MFILE" != x ; then
1352 #- create new MPI machine-file with the right number of Procs
1353 rm -f $LOC_MFILE
1354 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1355 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1356 if [ $nl -lt $LOC_NPROC ] ; then
1357 rm -f $LOC_MFILE
1358 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1359 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1360 fi
1361 if [ $verbose -gt 1 ]; then
1362 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1363 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1364 fi
1365 fi
1366 fi
1367 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1368 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1369 continue
1370 fi
1371 if test "x$MPI" != "x0" -a "x$MULTI_THREAD" = "xt" ; then
1372 retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/input/eedata.mth"`
1373 if test $retv != 0 ; then
1374 echo "input/eedata.mth tiling misfit -- skipping $dir"
1375 continue
1376 fi
1377 fi
1378
1379 # Check whether there are "extra runs" for this testdir
1380 extra_runs=
1381 if test "x$NORUN" = xf ; then
1382 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1383 fi
1384 #echo "ex_run_dirs='$ex_run_dirs'"
1385 for exd in $ex_run_dirs ; do
1386 name=`echo $exd | sed -e "s/$inputdir\.//"`
1387 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1388 outf="$dir/results/$refExOut"
1389 if test -f $outf -a -r $outf ; then
1390 if test "x$MULTI_THREAD" = "xt" ; then
1391 if test -r $dir"/"$exd"/eedata.mth" ; then
1392 if test "x$MPI" = "x0" ; then
1393 extra_runs="$extra_runs $name"
1394 else
1395 retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/"$exd"/eedata.mth"`
1396 if test $retv = 0 ; then
1397 extra_runs="$extra_runs $name"
1398 else
1399 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1400 fi
1401 fi
1402 #else echo $dir"/"$exd"/eedata.mth: not found"
1403 fi
1404 else
1405 extra_runs="$extra_runs $name"
1406 fi
1407 fi
1408 done
1409
1410 echo
1411 if test "x$extra_runs" = "x" ; then
1412 echo "Experiment: $dir"
1413 else
1414 echo "Experiment: $dir ; extra_runs=$extra_runs"
1415 fi
1416 echo
1417 unset genmake makedepend make run
1418 results=$EMPTY_RESULTS
1419
1420 # Create an output dir & summary.txt file for each tested experiment (tdir)
1421 locDIR=$DRESULTS"/"$dir
1422 mkdir $locDIR
1423 #- report to this experiment local summary file ---
1424 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1425 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1426 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1427 CDIR=`pwd`"/$locDIR"
1428
1429 if test "x$NORUN" = xt ; then
1430 run=N
1431 genmakemodel $dir/$builddir && genmake=Y \
1432 && makeclean $dir/$builddir \
1433 && symlink_mpifiles $dir $code_dir $builddir \
1434 && makedependmodel $dir/$builddir && makedepend=Y \
1435 && makemodel $dir/$builddir && make=Y
1436 else
1437 genmakemodel $dir/$builddir && genmake=Y \
1438 && makeclean $dir/$builddir \
1439 && symlink_mpifiles $dir $code_dir $builddir \
1440 && makedependmodel $dir/$builddir && makedepend=Y \
1441 && makemodel $dir/$builddir && make=Y \
1442 && run_clean $dir/$rundir \
1443 && linkdata $dir/$rundir $inputdir \
1444 && runmodel $dir/$rundir && run=Y \
1445 && results=`testoutput_run $dir $rundir $ref_outp`
1446 fi
1447 #echo "results='$results'"
1448
1449 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1450 echo 1>&2
1451 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1452 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1453
1454 for ex in $extra_runs ; do
1455 unset run
1456 results=$EMPTY_RESULTS
1457 # reference output file
1458 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1459 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1460 locDIR=$DRESULTS"/"$dir"."$ex
1461 mkdir $locDIR
1462 #- report to this experiment local summary file ---
1463 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1464 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1465 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1466 CDIR=`pwd`"/$locDIR"
1467 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1468 run_clean $dir/$pfxdir.$ex
1469 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1470 runmodel $dir/$pfxdir.$ex && run=Y \
1471 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1472 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1473 fres="$fres.$ex"
1474 echo 1>&2
1475 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1476 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1477 if test "x$POSTCLEAN" = x2 ; then
1478 run_clean $dir/$pfxdir.$ex
1479 fi
1480 done
1481
1482 if test -f $DRESULTS"/"genmake_state ; then : ; else
1483 if test -f $dir/$builddir/Makefile ; then
1484 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1485 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1486 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1487 echo " $mkOpt" >> $DRESULTS/genmake_state
1488 if test "x$OPTFILE" = xNONE ; then
1489 eval $mkOpt
1490 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1491 $SUMMARY > tr_0.tmp_log
1492 RETVAL=$?
1493 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1494 cp tr_0.tmp_log $SUMMARY
1495 else rm -f tr_0.tmp_log
1496 fi
1497 fi
1498 gmkLog=$dir/$builddir/genmake.log
1499 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1500 RETVAL=$?
1501 if test "x$RETVAL" = x0 ; then
1502 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1503 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1504 | grep -v '^... compiler version ' > tr_1.tmp_log
1505 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1506 >> $DRESULTS/genmake_state
1507 rm -f tr_1.tmp_log
1508 fi
1509 fi
1510 fi
1511 #postclean $dir/$builddir
1512 if test "x$POSTCLEAN" = x2 ; then
1513 makeclean $dir/$builddir \
1514 && run_clean $dir/$rundir
1515 fi
1516 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1517
1518 echo "-------------------------------------------------------------------------------"
1519
1520 done
1521
1522 printf "Start time: " >> $SUMMARY
1523 echo "$start_date" >> $SUMMARY
1524 printf "End time: " >> $SUMMARY
1525 date >> $SUMMARY
1526
1527 # If addresses were supplied and mpack built successfully, then try
1528 # to send email using mpack.
1529 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1530 echo "No results email was sent."
1531 else
1532 if test "x$HAVE_MPACK" = xt ; then
1533 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1534 && gzip $DRESULTS".tar" \
1535 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1536 RETVAL=$?
1537 if test "x$RETVAL" != x0 ; then
1538 echo
1539 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1540 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1541 echo " summary of results from the directory \"$DRESULTS\"."
1542 echo
1543 else
1544 echo
1545 echo "An email containing results was sent to the following addresses:"
1546 echo " \"$ADDRESSES\""
1547 echo
1548 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1549 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1550 fi
1551 fi
1552 fi
1553
1554 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1555 rm -f tr_cmpnum.c tr_cmpnum
1556 fi
1557
1558 if test "x$CLEANUP" != xt ; then
1559 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1560 if test -e tr_out.txt ; then
1561 mv tr_out.txt tr_out.txt.old
1562 fi
1563 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1564 fi
1565
1566 if test "x$DELDIR" = xt ; then
1567 rm -rf $DRESULTS
1568 fi

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