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Revision 1.156 - (show annotations) (download)
Thu Jan 20 21:55:52 2011 UTC (13 years, 2 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint62r
Changes since 1.155: +123 -119 lines
- add option -deloutp (-do) to remove output file after successful run
- add option -mfile (-mf) for MPI machile-file and for each test-exp,
  extract exact list of procs from this file ; adjust COMMAND by
  replacing TR_MFILE with local machile-file

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.155 2011/01/19 22:12:55 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
19 echo " (DEF=\"-ieee\")"
20 echo " (-gsl) compile with \"-gsl\" flag"
21 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
22 echo " (-optfile|-of) STRING list of optfiles to use"
23 echo " (-addr|-a) STRING list of email recipients"
24 echo " (DEF=\"\" no email is sent)"
25 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
26 echo " (DEF=\"../tools/mpack-1.6\")"
27 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
28 echo " (recognized groups: basic, tutorials)"
29 echo " (DEF=\"\" which test all)"
30 echo " (if list= 'start_from THIS_EXP' then"
31 echo " test THIS_EXP + all the following)"
32 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
33 echo " (DEF=\"\" which test all)"
34 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
35 echo " Bourne-compatible \"sh\" shell"
36 echo " (DEF=\"\" for \"bash\")"
37 echo " (-adm|-ad) perform an adjoint run"
38 echo " (-oad) perform an OpenAD adjoint run"
39 echo " (-command|-c) STRING command to run"
40 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
41 echo " (-make|-m) STRING command to use for \"make\""
42 echo " (DEF=\"make\")"
43 echo " (-odir) STRING used to build output directory name"
44 echo " (DEF=\"hostname\")"
45 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
46 # echo " (DEF=\"1 2 3 4 5\")"
47 echo " (-match) NUMBER Matching Criteria (number of digits)"
48 echo " (DEF=\"$MATCH_CRIT\")"
49 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
50 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
51 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
52 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
53 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
54 echo " (-nogenmake|-ng) skip the genmake stage"
55 echo " (-noclean|-nc) skip the \"make clean\" stage"
56 echo " (-nodepend|-nd) skip the \"make depend\" stage"
57 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
58 echo " (-deloutp|-do) delete output files after successful run"
59 echo " (-deldir|-dd) on success, delete the output directory"
60 echo " (-ts) provide timing information per timestep"
61 echo " (-papis) provide MFlop/s per timestep using PAPI"
62 echo " (-pcls) provide MFlop/s per timestep using PCL"
63 echo
64 echo "and where STRING can be a whitespace-delimited list"
65 echo "such as:"
66 echo
67 echo " -t 'exp0 exp2 exp3' "
68 echo " -addr='abc@123.com testing@home.org'"
69 echo
70 echo "provided that the expression is properly quoted within the current"
71 echo "shell (note the use of single quotes to protect white space)."
72 echo
73 exit 1
74 }
75
76 # build the mpack utility
77 build_mpack()
78 {
79 printf "building the mpack utility... "
80 MPACK="$MPACKDIR/mpack"
81 if test ! -x $MPACK ; then
82 if test ! -d $MPACKDIR ; then
83 echo
84 echo "Error: can't find \"$MPACKDIR\""
85 echo " are you sure this program is being run in the correct "
86 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
87 echo
88 HAVE_MPACK=f
89 fi
90 if test "x$CC" = x ; then
91 export CC=cc
92 fi
93 printf "building mpack (using CC=$CC)... "
94 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
95 RETVAL=$?
96 if test "x$RETVAL" != x0 ; then
97 echo
98 echo "Error building the mpack tools at: $MPACK_DIR"
99 echo
100 HAVE_MPACK=f
101 else
102 rm -f tr_build_mpack.out
103 HAVE_MPACK=t
104 echo "done"
105 fi
106 else
107 HAVE_MPACK=t
108 echo "already exist"
109 fi
110 }
111
112 testoutput_var()
113 {
114 # testoutput_var dir s1 label subdir reference_output
115 #
116 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
117 # with same output from reference file $dir/results/$reference_output
118 # using search strings s1 and text label
119
120 if [ $debug -gt 0 ]; then
121 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
122 fi
123 if [ -r $1/$4/$OUTPUTFILE ]; then
124 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
125 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
126 if [ $lncntA -lt 2 ]; then
127 if [ $verbose -gt 0 ]; then
128 echo Not enough lines of output when searching for "$2" 1>&2
129 fi
130 return 99
131 fi
132 else
133 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
134 return 99
135 fi
136 if [ $debug -gt 0 ]; then
137 echo testoutput_var: grep "$2" $1/results/$5 1>&2
138 fi
139 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
140 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
141 if [ $lncntB -lt 2 ]; then
142 if [ $verbose -gt 0 ]; then
143 echo Not enough lines of output when searching for "$2" 1>&2
144 fi
145 return 99
146 fi
147 if [ $lncntA -ne $lncntB ]; then
148 if [ $verbose -gt 0 ]; then
149 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
150 fi
151 return 99
152 fi
153 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
154 if [ $has_nan -gt 0 ] ; then
155 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
156 return 99
157 fi
158 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
159 if [ $has_inf -gt 0 ] ; then
160 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
161 return 99
162 fi
163 if [ $debug -gt 0 ]; then
164 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
165 fi
166 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
167 if [ $debug -gt 0 ]; then
168 echo testoutput_var: compare_lines 1>&2
169 fi
170 if [ $verbose -gt 1 ]; then
171 cat tmp3.txt 1>&2
172 fi
173 echo "-1" >> tmp3.txt
174 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
175 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
176 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
177 if [ $digits_of_similarity -eq 99 ]; then
178 if [ $verbose -gt 0 ]; then
179 echo testoutput_var: No comparison was available for \"$3\" 1>&2
180 fi
181 digits_of_similarity=99
182 else
183 if [ $verbose -gt 0 ]; then
184 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
185 fi
186 fi
187 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
188
189 return $digits_of_similarity
190 }
191
192 testoutput_run()
193 {
194 # testoutput_run directory subdir reference_output
195 #
196 # test output from 1 run in "directory"
197 # --> same processing for adjoint & forward test
198 # default list of output variables to be checked:
199 # 1rst : main variable used to decide if it pass or FAIL
200 # others : number of matching digits to be printed in summary.txt
201 listChk=$DEF_CHECK_LIST
202 # load experiment-specific list from file "tr_checklist" (if it exist)
203 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
204 sVar=`echo $listChk | awk '{print $1}'`
205 # remove 1rst var and expand the list: + => min max mean s.d
206 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
207 | sed 's/+//g' | sed "s/^$sVar//"`
208 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
209 # check for ptracer output in reference_output file :
210 outpref=$1/results/$3
211 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
212 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
213 for ii in $PTRACERS_NUM ; do
214 ptrfound=0
215 for jj in $ptr_mon ; do
216 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
217 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
218 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
219 done
220 if test $ptrfound = '1' ; then
221 eval "HAVE_PTR0"$ii"=t"
222 else
223 eval "HAVE_PTR0"$ii"=f"
224 if test "x$ADM" = x -a "x$OADM" = x; then
225 # remove this ptr from the list of output variable to check
226 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
227 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
228 fi
229 fi
230 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
231 done
232 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
233 if test $tst != 1 ; then
234 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
235 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
236 echo "==> WARNING: in checked list:" $listVar 1>&2
237 #- put it back once:
238 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
239 fi
240 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
241 #- report to this experiment local summary file ---
242 echo "MACH='$MACH'" > $locDIR"/summary.txt"
243 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
244 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
245 grep '(PID\.TID 0000\.0001) n.. =' $1/$2/$OUTPUTFILE \
246 | sed 's/(PID.TID 0000.0001) //' >> $locDIR"/summary.txt"
247 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
248 #---
249 allargs=""
250 for xx in $listVar
251 do
252 case $xx in
253 'PS') if [ $debug -gt 0 ]
254 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
255 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
256 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
257 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
258 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
259 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
260 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
261 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
262 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
263 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
264 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
265 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
266 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
267 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
268 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
269 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
270 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
271 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
272 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
273 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
274 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
275 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
276 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
277 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
278 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
279 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
280 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
281 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
282 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
283 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
284 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
285 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
286 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
287 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
288 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
289 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
290 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
291 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
292 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
293 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
294 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
295 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
296 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
297 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
298 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
299 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
300 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
301 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
302 esac
303 if test $xx = $sVar
304 then allargs="$allargs > $yy <"
305 else allargs="$allargs $yy"
306 fi
307 done
308
309 nbVar=`echo $listVar | awk '{print NF}'`
310 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
311 #-- fill line (up to standard length) with dot:
312 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
313 echo $allargs $adNul
314 else
315 echo $allargs
316 fi
317 # <-- same processing for adjoint & forward test
318 }
319
320 genmakemodel()
321 {
322 # genmakemodel directory
323 if test "x$NOGENMAKE" = xt ; then
324 echo "genmake skipped!"
325 else
326 if test "x$BASH" = x ; then
327 GENMAKE2="../../../tools/genmake2"
328 else
329 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
330 fi
331 (
332 cd $1;
333 command="$GENMAKE2 -ds -m $MAKE"
334 if test "x$MKDEPEND" != x ; then
335 command="$command -makedepend=$MKDEPEND"
336 fi
337 if test "x$ADM" = xt ; then
338 command="$command --mods=../code_ad"
339 elif test "x$OADM" = xt ; then
340 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
341 else
342 command="$command -mods=../code"
343 fi
344 if test "x$OPTFILE" != xNONE ; then
345 command="$command -optfile=$OPTFILE"
346 fi
347 if test "x$IEEE" != x ; then
348 command="$command -ieee"
349 fi
350 if test "x$GSL" = xt ; then
351 command="$command -gsl"
352 fi
353 if test "x$MPI" != x0 ; then
354 command="$command -mpi"
355 fi
356 if test "x$MULTI_THREAD" = xt ; then
357 #- run multi-threaded using OpenMP:
358 command="$command -omp"
359 fi
360 if test "x$USE_R4" = xt ; then
361 command="$command -use_r4"
362 fi
363 if test "x$TS" = xt ; then
364 command="$command -ts"
365 fi
366 if test "x$PAPIS" = xt ; then
367 command="$command -papis"
368 else
369 if test "x$PCLS" = xt ; then
370 command="$command -pcls"
371 fi
372 fi
373 printf 'genmake ... '
374 eval $command > genmake.tr_log 2>&1
375 RETVAL=$?
376 # Reduce the size of the testing emails!
377 head -100 Makefile > $CDIR/Makefile_head
378 if test "x$RETVAL" != x0 ; then
379 tail genmake.tr_log
380 echo "genmakemodel: genmake failed"
381 cp genmake.log genmake_* genmake.tr_log $CDIR
382 return 1
383 else
384 echo "successful"
385 fi
386 )
387 fi
388 }
389
390 makeclean()
391 {
392 # makeclean directory
393 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
394 if test "x$NOCLEAN" = xt ; then
395 echo "make Clean skipped!"
396 else
397 (
398 cd $1;
399 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
400 if test -r Makefile ; then
401 printf 'clean build-dir: make Clean ... '
402 $MAKE Clean >> make.tr_log 2>&1
403 RETVAL=$?
404 if test "x$RETVAL" != x0 ; then
405 tail make.tr_log
406 echo "makeclean: \"make Clean\" failed"
407 cp make.tr_log genmake.log genmake.tr_log $CDIR
408 return 1
409 fi
410 echo successful
411 else
412 echo ''
413 fi
414 exit 0
415 )
416 fi
417 }
418
419 run_clean()
420 {
421 # run_clean directory
422 if test "x$NOCLEAN" = xt ; then
423 echo "run_clean skipped!"
424 else
425 (
426 cd $1;
427 printf 'clean run-dir ... '
428 # part of what is done after "make clean" when doing "make CLEAN"
429 find . -name "*.meta" -exec rm {} \;
430 find . -name "*.data" -exec rm {} \;
431 find . -name "fort.*" -exec rm {} \;
432 find . -type l -exec rm {} \;
433 rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime
434 rm -rf mnc_test_*
435 rm -f *_MIT_CE_000.opt0000 costfunction*0000
436 echo successful
437 exit 0
438 )
439 fi
440 }
441
442 makedependmodel()
443 {
444 # makedependmodel directory
445 if test "x$NODEPEND" = xt ; then
446 echo "make depend skipped!"
447 else
448 (
449 cd $1;
450 printf 'make depend ... '
451 $MAKE depend >> make.tr_log 2>&1
452 RETVAL=$?
453 if test "x$RETVAL" != x0 ; then
454 tail make.tr_log
455 echo "makedependmodel: make depend failed"
456 cp make.tr_log genmake.log genmake.tr_log $CDIR
457 return 1
458 else
459 echo successful
460 fi
461 )
462 fi
463 }
464
465 makemodel()
466 {
467 # makemodel directory
468 (
469 if test "x$NOMAKE" = xt ; then
470 cd $1;
471 if test -x $EXECUTABLE ; then
472 echo "make skipped!"
473 else
474 echo "no executable!"
475 return 2
476 fi
477 else
478 cd $1;
479 if test -r Makefile ; then
480 printf 'make ... '
481 if test "x$ADM" = xt ; then
482 $MAKE adall >> make.tr_log 2>&1
483 elif test "x$OADM" = xt ; then
484 $MAKE adAll >> make.tr_log 2>&1
485 else
486 if test "x$JOBS" = x ; then
487 $MAKE >> make.tr_log 2>&1
488 else
489 $MAKE -j $JOBS >> make.tr_log 2>&1
490 fi
491 fi
492 RETVAL=$?
493 if test "x$RETVAL" != x0 ; then
494 tail make.tr_log
495 echo failed
496 cp make.tr_log genmake.log genmake.tr_log $CDIR
497 rm -f $EXECUTABLE
498 return 1
499 else
500 echo successful
501 fi
502 fi
503 fi
504 )
505 }
506
507 mk_mpi_size()
508 {
509 # mk_mpi_size input_file output_file proc_Nb
510 #
511 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
512 # for an MPI build with no more than proc_Nb processors ;
513 # return the effective number of processors.
514
515 inp=$1
516 out=$2
517 np=$3
518 tmp=TTT.$$
519
520 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
521 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
522 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
523 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
524
525 #- find the largest divisor of input_file proc Nb, but not larger than $np
526 pp=0
527 i=1
528 while [ $i -le $px ] ; do
529 if [ `expr $px % $i` -eq 0 ] ; then
530 j=1
531 while [ $j -le $py ] ; do
532 if [ `expr $py % $j` -eq 0 ] ; then
533 ij=`expr $i \* $j`
534 if [ $ij -gt $pp ] ; then
535 if [ $ij -le $np ] ; then
536 ix=$i ; jy=$j ; pp=$ij
537 #echo " ix,jy= $ix,$jy"
538 fi
539 fi
540 fi
541 j=`expr $j + 1`
542 done
543 fi
544 i=`expr $i + 1`
545 done
546
547 #- create new SIZE.h type file:
548 sx=`expr $sx \* $px / $ix`
549 sy=`expr $sy \* $py / $jy`
550 if [ $verbose -gt 1 ]; then
551 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
552 fi
553 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
554 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
555 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
556 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
557 rm -f $tmp
558 return $pp
559 }
560
561 symlink_mpifiles()
562 {
563 # Put special links so that MPI specific files are used
564 # This MUST be invoked between makeclean and makelinks because
565 # the Makefile will link to non-mpi files by default
566
567 dir=$1
568 code_dir=$2
569 build_dir=$dir/$3
570
571 # These are files that should replace their counter-part when using -mpi
572 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
573
574 for ii in $MPI_FILES ; do
575 i=`echo $ii | sed 's:^\./::'`
576 name=`echo $i | sed 's:_mpi::'`
577 file="../$code_dir/$i"
578 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
579
580 # Is this an MPI run?
581 if test "x$MPI" = x0 ; then
582 # NO: We undo any _mpi symbolically linked files
583 if test -L $build_dir/$name ; then
584 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
585 RETVAL=$?
586 if test "x$RETVAL" = x0 ; then
587 if [ $verbose -gt 1 ]; then
588 echo " Un-linking $name from ../$code_dir" ; fi
589 rm -f $build_dir/$name
590 fi
591 fi
592 else
593 # YES: We symbolically link these files to the build
594 # dir so long as there is no real file in place
595 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
596 RETVAL=$?
597 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
598 if test "x$RETVAL" != x0 ; then
599 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
600 if test ! -r $build_dir/$name ; then
601 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
602 (cd $build_dir; ln -sf $file $name)
603 fi
604 fi
605 fi
606 done
607 }
608
609 linkdata()
610 {
611 # linkdata run_dir input_dir_1 input_dir_2 ...
612 #
613 # symbolically link data files to run directory
614 if test -d $1 ; then
615 (
616 cd $1 ; shift
617 echo 'linkdata from dirs:' $*
618 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
619 for xx in $inpMPI ; do
620 if test -r "../"$1"/"$xx ; then
621 # found 1 _mpi sfx file in 1rst input dir and it is readable
622 yy=`echo $xx | sed 's:\.mpi$::'`
623 if test "x$MPI" = "x0" ; then
624 # not mpi test: remove symbolic link
625 if test -h $yy ; then rm -f $yy ; fi
626 else
627 # mpi test: remove symbolic link & link .mpi sfx file
628 if test -h $yy ; then rm -f $yy ; fi
629 if test ! -r $yy ; then
630 ln -sf "../"$1"/"$xx $yy ;
631 printf " $xx" 1>&2
632 fi
633 fi
634 fi
635 done
636 if test -r "../"$1"/eedata.mth" ; then
637 # found eedata.mth in 1rst input dir and it is readable
638 if test "x$MULTI_THREAD" = "xt" ; then
639 # multi-threaded test: remove symbolic link & link eedata.mth
640 if test -h eedata ; then rm -f eedata ; fi
641 if test ! -r eedata ; then
642 ln -sf "../"$1"/eedata.mth" eedata ;
643 printf ' eedata.mth' 1>&2
644 fi
645 else
646 # not multi-threaded test: remove eedata symbolic link
647 if test -h eedata ; then rm -f eedata ; fi
648 fi
649 fi
650 prevDir='NONE'
651 for ldir in $* ; do
652 if test -d "../"$ldir -a $ldir != $prevDir ; then
653 printf " ldir=${ldir}:" 1>&2
654 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
655 for i in $files ; do
656 if test ! -d "../"$ldir/$i ; then
657 if test ! -r $i ; then
658 printf ' '$i 1>&2
659 ln -sf "../"$ldir"/"$i $i
660 fi
661 fi
662 done
663 printf ' ;' 1>&2
664 if test -x "../"$ldir"/"prepare_run ; then
665 "../"$ldir"/"prepare_run 1>&2
666 else
667 echo '' 1>&2
668 fi
669 fi
670 prevDir=$ldir
671 done
672 )
673 fi
674 }
675
676 runmodel()
677 {
678 # runmodel directory
679 #
680 # runs $COMMAND in "directory"
681 # (where "$COMMAND" is relative to "directory")
682 (
683 cd $1
684 printf 'runmodel in %s ... ' $1
685 if test -L $EXECUTABLE ; then
686 if test -x "../"$builddir"/"$EXECUTABLE ; then
687 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
688 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
689 else rm -f $EXECUTABLE
690 fi
691 fi
692 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
693 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
694 ln -sf "../"$builddir"/"$EXECUTABLE .
695 fi
696 if test "x$MPI" != x0 ; then
697 #- adjust the MPI run command with the right number of Procs
698 #echo '' ; echo " COMMAND='$COMMAND'"
699 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
700 if test "x$MPI_MFILE" != x ; then
701 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
702 fi
703 #echo " COMMAND='$COMMAND'"
704 fi
705 if test ! -x $EXECUTABLE ; then
706 rm -f $RUNLOG ; touch $RUNLOG
707 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
708 echo " no executable:" $EXECUTABLE >> $RUNLOG
709 RETVAL=8
710 ENDVAL=-1
711 else
712 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
713 # output do not exist or is older than executable:
714 rm -f $RUNLOG ; touch $RUNLOG
715 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
716 ( eval $COMMAND ) >> $RUNLOG 2>&1
717 RETVAL=$?
718 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
719 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
720 find . -name "*.meta" -exec rm {} \;
721 find . -name "*.data" -exec rm {} \;
722 rm -rf mnc_test_*
723 fi
724 else
725 RETVAL=0
726 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
727 touch $RUNLOG
728 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
729 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
730 fi
731 fi
732 rm -f run.log_tmp
733 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
734 echo successful
735 printf '=> output from running in %s :\n' $1 1>&2
736 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
737 # === Reduce the size of the testing emails!
738 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
739 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
740 return 0
741 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
742 #-- for some weird cases (run is finihed but with error code)
743 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
744 printf '=> output from running in %s :\n' $1 1>&2
745 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
746 return 0
747 else
748 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
749 printf '=> output from running in %s :\n' $1 1>&2
750 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
751 cp $RUNLOG $CDIR"/"$RUNLOG
752 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
753 return 1
754 fi
755 )
756 }
757
758 createcodelet()
759 {
760 # create codelet for comparing model output
761
762 printf "creating the comparison code (using CC=$CC)... "
763 cat > tr_cmpnum.c <<EOF
764 #include <stdio.h>
765 #include <math.h>
766 int main( int argc, char** argv ) {
767 int linnum,cmplin,best,lncnt;
768 double a,b,abave,relerr;
769 best = -22;
770 lncnt = 0;
771 while( 1 & ( (lncnt+=1) < 999 ) ) {
772 scanf("%d", &linnum);
773 if (linnum == -1) break;
774 scanf("%lf", &a); scanf("%lf", &b);
775 abave = 0.5*(fabs(a)+fabs(b));
776 if ( abave == abave ) {
777 if (abave > 0.0) {
778 relerr=fabs(a-b)/abave;
779 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
780 else { cmplin = -16 ; }
781 best = (best > cmplin) ? best : cmplin; }
782 else { cmplin = -22 ; }
783 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
784 }
785 else {
786 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
787 break; }
788 }
789 if (lncnt == 999) best=-29;
790 if (linnum != -1) best=-99;
791 printf("%d\n", -best);
792 return 0;
793 }
794 EOF
795 $CC -o tr_cmpnum tr_cmpnum.c -lm
796
797 if [ -x ./tr_cmpnum ]; then
798 echo "OK"
799 return 0
800 else
801 echo
802 echo "ERROR: failed to compile comparison code -- please specify"
803 echo " a C compiler using the CC environment variable."
804 exit 1
805 fi
806 }
807
808 formatresults()
809 {
810 # formatresults expt genmake depend make run results*
811
812 nm=$1
813 printf '%s %s %s %s' $2 $3 $4 $5
814 shift; shift; shift; shift; shift;
815 listPrt=$@
816 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
817 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
818 printf '%3s' $listPrt
819 # line below does not work on hp-ux_ia64 : do those substitutions later on
820 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
821
822 if [ $xx = '..' ]; then
823 printf ' N/O '
824 elif [ $xx = '--' ]; then
825 printf ' N/O '
826 elif [ $xx = 99 ]; then
827 printf ' N/O '
828 else
829 if [ $xx -ge $MATCH_CRIT ]; then
830 printf ' pass'
831 else
832 printf ' FAIL'
833 fi
834 fi
835 printf ' %s' $nm
836 printf '\n'
837
838 }
839
840 scandirs()
841 {
842 if [ $# -eq 1 ]; then
843 for arg in * ; do
844 test -f $arg/$1 && echo $arg
845 done
846 else
847 echo $*
848 fi
849 }
850
851
852 check_eedata()
853 {
854 # check_eedata size.h eedata
855 if [ $# -eq 2 ] ; then
856 if test -f $1 -a -f $2 ; then
857 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
858 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
859 if test "x$nx" = x ; then
860 rx=10
861 else
862 rx=`expr $sx % $nx`
863 fi
864 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
865 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
866 if test "x$ny" = x ; then
867 ry=20
868 else
869 ry=`expr $sy % $ny`
870 fi
871 echo `expr $rx + $ry`
872 else
873 echo '-1'
874 fi
875 else
876 echo '-2'
877 fi
878
879 }
880
881 ###############################################################################
882
883
884 # Default properties
885 debug=0
886 verbose=1
887
888 IEEE=true
889 if test "x$MITGCM_IEEE" != x ; then
890 IEEE=$MITGCM_IEEE
891 fi
892 GSL=f
893
894 CLEANUP=f
895 NORUN=f
896 QUICK=f
897 NOMAKE=f
898 NOGENMAKE=f
899 NOCLEAN=f
900 NODEPEND=f
901 POSTCLEAN=0
902
903 BASH=
904 OPTFILE=NONE
905 ADDRESSES=
906 TESTDIRS=
907 SKIPDIRS=
908 MPACKDIR="../tools/mpack-1.6"
909 HAVE_MPACK=
910 MPACK=
911 COMMAND=
912 MKDEPEND=
913 if test "x$MAKE" = x ; then
914 MAKE=make
915 fi
916 if test "x$CC" = x ; then
917 CC=cc
918 fi
919 JOBS=
920 MPI=0
921 MPI_MFILE=
922 MULTI_THREAD=f
923 OUTDIR=
924 DELDIR=
925 USE_R4=
926
927 ADM=
928 OADM=
929
930 # list of pTracers to check for monitor output
931 PTRACERS_NUM="1 2 3 4 5"
932
933 MATCH_CRIT=10
934
935 printf "parsing options... "
936
937 ac_prev=
938 for ac_option ; do
939
940 # If the previous option needs an argument, assign it.
941 if test -n "$ac_prev"; then
942 eval "$ac_prev=\$ac_option"
943 ac_prev=
944 continue
945 fi
946
947 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
948
949 case $ac_option in
950
951 -help | --help | -h | --h) usage ;;
952
953 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
954 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
955
956 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
957 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
958 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
959 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
960
961 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
962 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
963 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
964 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
965
966 -bash | --bash | -b | --b) ac_prev=BASH ;;
967 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
968
969 -command | --command | -c | --c) ac_prev=COMMAND ;;
970 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
971
972 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
973 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
974
975 -make | --make | -m | --m) ac_prev=MAKE ;;
976 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
977
978 -odir | --odir) ac_prev=OUTDIR ;;
979 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
980
981 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
982 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
983
984 -match | --match ) ac_prev=MATCH_CRIT ;;
985 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
986
987 -j | --j) ac_prev=JOBS ;;
988 -j=* | --j=*) JOBS=$ac_optarg ;;
989
990 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
991
992 -norun | --norun | -nr | --nr) NORUN=t ;;
993 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
994 -quick | --quick | -q | --q) QUICK=t ;;
995 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
996 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
997 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
998
999 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1000 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1001
1002 -mpi | --mpi) MPI=2 ;;
1003 -MPI | --MPI) ac_prev=MPI ;;
1004 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1005
1006 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1007 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1008
1009 -mth) MULTI_THREAD=t ;;
1010
1011 -adm | -ad) ADM=t ;;
1012 -oad) OADM=t; NODEPEND=t ;;
1013
1014 -ieee) IEEE=true ;;
1015 -noieee) IEEE= ;;
1016 -gsl) GSL=t ;;
1017
1018 -verbose) verbose=2 ;;
1019 -debug) debug=1 ;;
1020 -quiet) verbose=0 ;;
1021
1022 -deldir | -dd) DELDIR=t ;;
1023
1024 -use_r4|-ur4) USE_R4=t ;;
1025
1026 -ts) TS=t;;
1027 -papis) PAPIS=t;;
1028 -pcls) PCL=t;;
1029
1030 -*) echo "Error: unrecognized option: "$ac_option
1031 usage ;;
1032 *) echo "Error: unrecognized argument: "$ac_option
1033 usage ;;
1034
1035 esac
1036
1037 done
1038
1039 if test "x$QUICK" = xt ; then
1040 NOGENMAKE=t
1041 NOCLEAN=t
1042 NODEPEND=t
1043 fi
1044
1045 #- check length of MPI machine file:
1046 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1047 if test -r $MPI_MFILE ; then
1048 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1049 if [ $nl -lt $MPI ] ; then
1050 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1051 usage
1052 fi
1053 if [ $verbose -gt 1 ]; then
1054 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1055 fi
1056 else
1057 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1058 usage
1059 fi
1060 fi
1061
1062 #- setting for forward or ADM testing
1063 if test "x$ADM" = xt ; then
1064 code_dir=code_ad
1065 inputdir=input_ad
1066 ref_outp="output_adm.txt"
1067 EXECUTABLE="mitgcmuv_ad"
1068 elif test "x$OADM" = xt ; then
1069 code_dir=code_oad
1070 inputdir=input_oad
1071 ref_outp="output_oadm.txt"
1072 EXECUTABLE="mitgcmuv_ad"
1073 else
1074 code_dir=code
1075 inputdir=input
1076 ref_outp="output.txt"
1077 EXECUTABLE="mitgcmuv"
1078 fi
1079
1080 xx=`echo $TESTDIRS | awk '{print $1}'`
1081 if test "x$TESTDIRS" = x ; then
1082 LIST=`scandirs results/$ref_outp`
1083 elif test $xx = 'start_from' ; then
1084 xx=`echo $TESTDIRS | awk '{print $2}'`
1085 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1086 else
1087 #- expand group of experiments:
1088 LIST=" "
1089 for xx in $TESTDIRS
1090 do
1091 case $xx in
1092 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1093 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1094 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1095 ;;
1096 'tutorials')
1097 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1098 *) LIST=${LIST}" "$xx ;;
1099 esac
1100 done
1101 fi
1102 #echo 'LIST='${LIST}'<'
1103 #- skip dirs, remove duplicate and non-directory:
1104 TESTDIRS=" "
1105 count=0
1106 for xx in $LIST
1107 do
1108 yy=`echo $SKIPDIRS | grep -c $xx`
1109 if test $yy = 0 ; then
1110 if test -d $xx ; then
1111 yy=`echo $TESTDIRS | grep -c $xx`
1112 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1113 else count=1 ;
1114 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1115 fi
1116 else
1117 if test $count = 1 ; then echo -n ", \"$xx\""
1118 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1119 fi
1120 fi
1121 done
1122 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1123 #echo 'TESTDIRS='${TESTDIRS}'<'
1124
1125 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1126 OPTFILE=$MITGCM_OF
1127 fi
1128
1129 LOC_MFILE='tr_mpi_mfile'
1130 RUNLOG="run.tr_log"
1131 OUTPUTFILE=$ref_outp
1132 if test "x$COMMAND" = x ; then
1133 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1134 fi
1135 if test "x$MPI" != x0 ; then
1136 OUTPUTFILE="STDOUT.0000"
1137 fi
1138
1139 echo "OK (COMMAND= $COMMAND )"
1140
1141 # set the Default List of output variables to be checked:
1142 # (use default or load experiment-specific list from file "tr_checklist")
1143 # content : 1rst = main variable used to decide if it pass or FAIL
1144 # others = number of matching digits to be printed in summary.txt
1145 if test "x$ADM" = x -a "x$OADM" = x; then
1146 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1147 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1148 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1149 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1150 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1151 else
1152 DEF_CHECK_LIST='Grad Cost Grad'
1153 EMPTY_RESULTS='.. ..'
1154 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1155 fi
1156
1157 # create the FORTRAN comparison code
1158 if test -x tr_cmpnum ; then
1159 echo "skipping comparison code build"
1160 else
1161 createcodelet
1162 fi
1163
1164 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1165 if test "x$ADDRESSES" = x ; then
1166 echo "skipping mpack build"
1167 else
1168 build_mpack
1169 fi
1170
1171 # Create a uniquely named directory to store results
1172 CMDLINE=$0
1173 for xx in "$@" ; do nw=`echo $xx | wc -w`
1174 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1175 else CMDLINE="$CMDLINE '$xx'" ; fi
1176 done
1177 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1178 MACH=`hostname`
1179 UNAMEA=`uname -a`
1180 DATE=`date +%Y%m%d`
1181 BASE="tr_"$MACH"_"$DATE"_"
1182 if test "x$OUTDIR" != x ; then
1183 BASE="tr_"$OUTDIR"_"$DATE"_"
1184 else
1185 short_name=`hostname | sed 's/\..*$//'`
1186 BASE="tr_"$short_name"_"$DATE"_"
1187 fi
1188 DNUM=0
1189 DRESULTS="$BASE$DNUM"
1190 while test -e $DRESULTS ; do
1191 DNUM=$(( $DNUM + 1 ))
1192 DRESULTS="$BASE$DNUM"
1193 done
1194 mkdir $DRESULTS
1195 RETVAL=$?
1196 if test "x$RETVAL" != x0 ; then
1197 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1198 exit 1
1199 fi
1200 SUMMARY="$DRESULTS/summary.txt"
1201 start_date=`date`
1202 echo $start_date > $SUMMARY
1203 echo 'run:' $CMDLINE >> $SUMMARY
1204 echo 'on :' $UNAMEA >> $SUMMARY
1205
1206 of_path=
1207 if test "x$OPTFILE" != xNONE ; then
1208 if test -r $OPTFILE ; then
1209 # get the path
1210 path=${OPTFILE%/*}
1211 if test "x$path" = x ; then
1212 of_path=`pwd`
1213 else
1214 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1215 fi
1216 file=${OPTFILE##*/}
1217 OPTFILE=$of_path/$file
1218 cp $OPTFILE $DRESULTS
1219 echo >> $SUMMARY
1220 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1221 else
1222 echo | tee $SUMMARY
1223 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1224 exit 1
1225 fi
1226 else
1227 echo >> $SUMMARY
1228 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1229 #-note: to be filled later after 1rst run
1230 fi
1231 echo
1232 echo >> $SUMMARY
1233 if test "x$ADM" = x -a "x$OADM" = x; then
1234 if [ $MATCH_CRIT -lt 10 ] ;
1235 then line_0="default "$MATCH_CRIT ;
1236 else line_0="default "$MATCH_CRIT ; fi
1237 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1238 line_1="G D M c m s m s m s m s"
1239 line_2="E p a R g m m e . m m e . m m e . m m e ."
1240 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1241 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1242 for ii in $PTRACERS_NUM ; do
1243 line_0="$line_0 --PTR 0"$ii"--"
1244 line_1="$line_1 m s"
1245 line_2="$line_2 m m e ."
1246 line_3="$line_3 i a a d"
1247 line_4="$line_4 n x n ."
1248 done
1249 echo "$line_0" | tee -a $SUMMARY
1250 echo "$line_1" | tee -a $SUMMARY
1251 echo "$line_2" | tee -a $SUMMARY
1252 echo "$line_3" | tee -a $SUMMARY
1253 echo "$line_4" | tee -a $SUMMARY
1254 echo " " | tee -a $SUMMARY
1255 else
1256 echo "ADJOINT=true" >> $SUMMARY
1257 echo >> $SUMMARY
1258 if [ $MATCH_CRIT -lt 10 ] ;
1259 then line_0="default "$MATCH_CRIT ;
1260 else line_0="default "$MATCH_CRIT ; fi
1261 echo "$line_0" | tee -a $SUMMARY
1262 cat << EOF | tee -a $SUMMARY
1263 G D M C G
1264 E p a R o r
1265 N n k u s a
1266 2 d e n t d
1267
1268 EOF
1269 fi
1270 echo "-------------------------------------------------------------------------------"
1271
1272 # ...and each test directory...
1273 for dir in $TESTDIRS ; do
1274
1275 # set builddir & rundir:
1276 builddir="build"
1277 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1278 rundir="run"
1279 pfxdir="tr_$rundir"
1280 if test ! -d $dir/$rundir ; then
1281 rundir=$builddir
1282 fi
1283 CODE_DIR=$dir/$code_dir
1284 BUILD_DIR=$dir/$builddir
1285
1286 # Cleanup only!
1287 if test "x$CLEANUP" = xt ; then
1288 echo -n ' --- dir:' $BUILD_DIR ': '
1289 makeclean $BUILD_DIR
1290 ( cd $BUILD_DIR
1291 rm -f $EXECUTABLE *.bak
1292 rm -f genmake_state genmake_*optfile genmake.log
1293 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1294 )
1295 if test -d $dir/$rundir/CVS ; then
1296 echo -n ' --- dir:' $dir/$rundir ': '
1297 run_clean $dir/$rundir
1298 fi
1299 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1300 ttd=`echo $trdir | wc -w`
1301 if test $ttd != 0 ; then
1302 echo ' --- rm dir:' $trdir
1303 ( cd $dir ; rm -rf $trdir )
1304 fi
1305 continue
1306 fi
1307
1308 # Verify that the testdir exists and contains previous
1309 # results in the correct location--or skip this directory!
1310 fout=$dir"/results/"$ref_outp
1311 if test ! -r $fout ; then
1312 echo "can't read \"$fout\" -- skipping $dir"
1313 continue
1314 fi
1315
1316 # Check for specific files for particular type of run
1317
1318 if test "x$MPI" != "x0" ; then
1319 if test -r $CODE_DIR"/SIZE.h_mpi" ; then
1320 #- create new SIZE.h with no more than '$MPI' Procs
1321 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI
1322 LOC_NPROC=$?
1323 ( cd $BUILD_DIR
1324 if test -r SIZE.h.mpi ; then
1325 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1326 else RETVAL=1
1327 fi
1328 if test "x$RETVAL" = x0 ; then
1329 rm -f tr_size.mpi
1330 else
1331 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1332 fi
1333 )
1334 else
1335 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1336 continue
1337 fi
1338 if test "x$MPI_MFILE" != x ; then
1339 #- create new MPI machine-file with the right number of Procs
1340 rm -f $LOC_MFILE
1341 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1342 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1343 if [ $nl -lt $LOC_NPROC ] ; then
1344 rm -f $LOC_MFILE
1345 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1346 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1347 fi
1348 if [ $verbose -gt 1 ]; then
1349 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1350 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1351 fi
1352 fi
1353 fi
1354 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1355 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1356 continue
1357 fi
1358 if test "x$MPI" != "x0" -a "x$MULTI_THREAD" = "xt" ; then
1359 retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/input/eedata.mth"`
1360 if test $retv != 0 ; then
1361 echo "input/eedata.mth tiling misfit -- skipping $dir"
1362 continue
1363 fi
1364 fi
1365
1366 # Check whether there are "extra runs" for this testdir
1367 extra_runs=
1368 if test "x$NORUN" = xf ; then
1369 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1370 fi
1371 #echo "ex_run_dirs='$ex_run_dirs'"
1372 for exd in $ex_run_dirs ; do
1373 name=`echo $exd | sed -e "s/$inputdir\.//"`
1374 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1375 outf="$dir/results/$refExOut"
1376 if test -f $outf -a -r $outf ; then
1377 if test "x$MULTI_THREAD" = "xt" ; then
1378 if test -r $dir"/"$exd"/eedata.mth" ; then
1379 if test "x$MPI" = "x0" ; then
1380 extra_runs="$extra_runs $name"
1381 else
1382 retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/"$exd"/eedata.mth"`
1383 if test $retv = 0 ; then
1384 extra_runs="$extra_runs $name"
1385 else
1386 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1387 fi
1388 fi
1389 #else echo $dir"/"$exd"/eedata.mth: not found"
1390 fi
1391 else
1392 extra_runs="$extra_runs $name"
1393 fi
1394 fi
1395 done
1396
1397 echo
1398 if test "x$extra_runs" = "x" ; then
1399 echo "Experiment: $dir"
1400 else
1401 echo "Experiment: $dir ; extra_runs=$extra_runs"
1402 fi
1403 echo
1404 unset genmake makedepend make run
1405 results=$EMPTY_RESULTS
1406
1407 # Create an output dir for each OPTFILE/tdir combination
1408 locDIR=$DRESULTS"/"$dir
1409 mkdir $locDIR
1410 CDIR=`pwd`"/$locDIR"
1411
1412 if test "x$NORUN" = xt ; then
1413 run=N
1414 genmakemodel $dir/$builddir && genmake=Y \
1415 && makeclean $dir/$builddir \
1416 && symlink_mpifiles $dir $code_dir $builddir \
1417 && makedependmodel $dir/$builddir && makedepend=Y \
1418 && makemodel $dir/$builddir && make=Y
1419 else
1420 genmakemodel $dir/$builddir && genmake=Y \
1421 && makeclean $dir/$builddir \
1422 && symlink_mpifiles $dir $code_dir $builddir \
1423 && makedependmodel $dir/$builddir && makedepend=Y \
1424 && makemodel $dir/$builddir && make=Y \
1425 && run_clean $dir/$rundir \
1426 && linkdata $dir/$rundir $inputdir \
1427 && runmodel $dir/$rundir && run=Y \
1428 && results=`testoutput_run $dir $rundir $ref_outp`
1429 fi
1430 #echo "results='$results'"
1431
1432 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1433 echo 1>&2
1434 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1435 touch $locDIR"/summary.txt"
1436 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1437 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1438 if test "x$ADM" = xt ; then
1439 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1440 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1441 >> $locDIR"/summary.txt"
1442 fi
1443
1444 for ex in $extra_runs ; do
1445 unset run
1446 results=$EMPTY_RESULTS
1447 # reference output file
1448 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1449 # Create an output dir for each OPTFILE/tdir.ex combination
1450 locDIR=$DRESULTS"/"$dir"."$ex
1451 mkdir $locDIR
1452 CDIR=`pwd`"/$locDIR"
1453 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1454 run_clean $dir/$pfxdir.$ex
1455 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1456 runmodel $dir/$pfxdir.$ex && run=Y \
1457 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1458 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1459 fres="$fres.$ex"
1460 echo 1>&2
1461 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1462 touch $locDIR"/summary.txt"
1463 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1464 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1465 if test "x$ADM" = xt ; then
1466 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1467 grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \
1468 >> $locDIR"/summary.txt"
1469 fi
1470 if test "x$POSTCLEAN" = x2 ; then
1471 run_clean $dir/$pfxdir.$ex
1472 fi
1473 done
1474
1475 if test -f $DRESULTS"/"genmake_state ; then : ; else
1476 if test -f $dir/$builddir/Makefile ; then
1477 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1478 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1479 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1480 echo " $mkOpt" >> $DRESULTS/genmake_state
1481 if test "x$OPTFILE" = xNONE ; then
1482 eval $mkOpt
1483 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1484 $SUMMARY > tr_0.tmp_log
1485 RETVAL=$?
1486 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1487 cp tr_0.tmp_log $SUMMARY
1488 else rm -f tr_0.tmp_log
1489 fi
1490 fi
1491 gmkLog=$dir/$builddir/genmake.log
1492 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1493 RETVAL=$?
1494 if test "x$RETVAL" = x0 ; then
1495 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1496 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1497 | grep -v '^... compiler version ' > tr_1.tmp_log
1498 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1499 >> $DRESULTS/genmake_state
1500 rm -f tr_1.tmp_log
1501 fi
1502 fi
1503 fi
1504 #postclean $dir/$builddir
1505 if test "x$POSTCLEAN" = x2 ; then
1506 makeclean $dir/$builddir \
1507 && run_clean $dir/$rundir
1508 fi
1509 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1510
1511 echo "-------------------------------------------------------------------------------"
1512
1513 done
1514
1515 printf "Start time: " >> $SUMMARY
1516 echo "$start_date" >> $SUMMARY
1517 printf "End time: " >> $SUMMARY
1518 date >> $SUMMARY
1519
1520 # If addresses were supplied and mpack built successfully, then try
1521 # to send email using mpack.
1522 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1523 echo "No results email was sent."
1524 else
1525 if test "x$HAVE_MPACK" = xt ; then
1526 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1527 && gzip $DRESULTS".tar" \
1528 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1529 RETVAL=$?
1530 if test "x$RETVAL" != x0 ; then
1531 echo
1532 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1533 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1534 echo " summary of results from the directory \"$DRESULTS\"."
1535 echo
1536 else
1537 echo
1538 echo "An email containing results was sent to the following addresses:"
1539 echo " \"$ADDRESSES\""
1540 echo
1541 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1542 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1543 fi
1544 fi
1545 fi
1546
1547 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1548 rm -f tr_cmpnum.c tr_cmpnum
1549 fi
1550
1551 if test "x$CLEANUP" != xt ; then
1552 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1553 if test -e tr_out.txt ; then
1554 mv tr_out.txt tr_out.txt.old
1555 fi
1556 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1557 fi
1558
1559 if test "x$DELDIR" = xt ; then
1560 rm -rf $DRESULTS
1561 fi

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