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Revision 1.154 - (show annotations) (download)
Fri Jan 14 23:55:00 2011 UTC (13 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.153: +143 -67 lines
changes to allow to test MPI with different number of processors
for each experiment: create file "SIZE.h.mpi" in each build dir.
Note: update of "-command" argument not yet implemented.

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.153 2010/12/29 22:35:50 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
18 echo " (DEF=\"-ieee\")"
19 echo " (-gsl) compile with \"-gsl\" flag"
20 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
21 echo " (-optfile|-of) STRING list of optfiles to use"
22 echo " (-addr|-a) STRING list of email recipients"
23 echo " (DEF=\"\" no email is sent)"
24 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
25 echo " (DEF=\"../tools/mpack-1.6\")"
26 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
27 echo " (recognized groups: basic, tutorials)"
28 echo " (DEF=\"\" which test all)"
29 echo " (if list= 'start_from THIS_EXP' then"
30 echo " test THIS_EXP + all the following)"
31 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
32 echo " (DEF=\"\" which test all)"
33 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
34 echo " Bourne-compatible \"sh\" shell"
35 echo " (DEF=\"\" for \"bash\")"
36 echo " (-adm|-ad) perform an adjoint run"
37 echo " (-oad) perform an OpenAD adjoint run"
38 echo " (-command|-c) STRING command to run"
39 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
40 echo " (-make|-m) STRING command to use for \"make\""
41 echo " (DEF=\"make\")"
42 echo " (-odir) STRING used to build output directory name"
43 echo " (DEF=\"hostname\")"
44 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
45 echo " (DEF=\"1 2 3 4 5\")"
46 echo " (-match) NUMBER Matching Criteria (number of digits)"
47 echo " (DEF=\"$MATCH_CRIT\")"
48 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
49 echo " (-clean) *ONLY* run \"make CLEAN\""
50 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
51 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
52 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
53 echo " (-nogenmake|-ng) skip the genmake stage"
54 echo " (-noclean|-nc) skip the \"make clean\" stage"
55 echo " (-nodepend|-nd) skip the \"make depend\" stage"
56 echo " (-deldir|-dd) on success, delete the output directory"
57 echo " (-ts) provide timing information per timestep"
58 echo " (-papis) provide MFlop/s per timestep using PAPI"
59 echo " (-pcls) provide MFlop/s per timestep using PCL"
60 echo
61 echo "and where STRING can be a whitespace-delimited list"
62 echo "such as:"
63 echo
64 echo " -t 'exp0 exp2 exp3' "
65 echo " -addr='abc@123.com testing@home.org'"
66 echo
67 echo "provided that the expression is properly quoted within the current"
68 echo "shell (note the use of single quotes to protect white space)."
69 echo
70 exit 1
71 }
72
73 # build the mpack utility
74 build_mpack()
75 {
76 printf "building the mpack utility... "
77 MPACK="$MPACKDIR/mpack"
78 if test ! -x $MPACK ; then
79 if test ! -d $MPACKDIR ; then
80 echo
81 echo "Error: can't find \"$MPACKDIR\""
82 echo " are you sure this program is being run in the correct "
83 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
84 echo
85 HAVE_MPACK=f
86 fi
87 if test "x$CC" = x ; then
88 export CC=cc
89 fi
90 printf "building mpack (using CC=$CC)... "
91 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
92 RETVAL=$?
93 if test "x$RETVAL" != x0 ; then
94 echo
95 echo "Error building the mpack tools at: $MPACK_DIR"
96 echo
97 HAVE_MPACK=f
98 else
99 rm -f tr_build_mpack.out
100 HAVE_MPACK=t
101 echo "done"
102 fi
103 else
104 HAVE_MPACK=t
105 echo "already exist"
106 fi
107 }
108
109 testoutput_var()
110 {
111 # testoutput_var dir s1 label subdir reference_output
112 #
113 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
114 # with same output from reference file $dir/results/$reference_output
115 # using search strings s1 and text label
116
117 if [ $debug -gt 0 ]; then
118 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
119 fi
120 if [ -r $1/$4/$OUTPUTFILE ]; then
121 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
122 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
123 if [ $lncntA -lt 2 ]; then
124 if [ $verbose -gt 0 ]; then
125 echo Not enough lines of output when searching for "$2" 1>&2
126 fi
127 return 99
128 fi
129 else
130 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
131 return 99
132 fi
133 if [ $debug -gt 0 ]; then
134 echo testoutput_var: grep "$2" $1/results/$5 1>&2
135 fi
136 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
137 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
138 if [ $lncntB -lt 2 ]; then
139 if [ $verbose -gt 0 ]; then
140 echo Not enough lines of output when searching for "$2" 1>&2
141 fi
142 return 99
143 fi
144 if [ $lncntA -ne $lncntB ]; then
145 if [ $verbose -gt 0 ]; then
146 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
147 fi
148 return 99
149 fi
150 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
151 if [ $has_nan -gt 0 ] ; then
152 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
153 return 99
154 fi
155 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
156 if [ $has_inf -gt 0 ] ; then
157 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
158 return 99
159 fi
160 if [ $debug -gt 0 ]; then
161 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
162 fi
163 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
164 if [ $debug -gt 0 ]; then
165 echo testoutput_var: compare_lines 1>&2
166 fi
167 if [ $verbose -gt 1 ]; then
168 cat tmp3.txt 1>&2
169 fi
170 echo "-1" >> tmp3.txt
171 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
172 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
173 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
174 if [ $digits_of_similarity -eq 99 ]; then
175 if [ $verbose -gt 0 ]; then
176 echo testoutput_var: No comparison was available for \"$3\" 1>&2
177 fi
178 digits_of_similarity=99
179 else
180 if [ $verbose -gt 0 ]; then
181 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
182 fi
183 fi
184 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
185
186 return $digits_of_similarity
187 }
188
189 testoutput_run()
190 {
191 # testoutput_run directory subdir reference_output
192 #
193 # test output from 1 run in "directory"
194 # --> same processing for adjoint & forward test
195 # default list of output variables to be checked:
196 # 1rst : main variable used to decide if it pass or FAIL
197 # others : number of matching digits to be printed in summary.txt
198 listChk=$DEF_CHECK_LIST
199 # load experiment-specific list from file "tr_checklist" (if it exist)
200 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
201 sVar=`echo $listChk | awk '{print $1}'`
202 # remove 1rst var and expand the list: + => min max mean s.d
203 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
204 | sed 's/+//g' | sed "s/^$sVar//"`
205 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
206 # check for ptracer output in reference_output file :
207 outpref=$1/results/$3
208 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
209 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
210 for ii in $PTRACERS_NUM ; do
211 ptrfound=0
212 for jj in $ptr_mon ; do
213 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
214 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
215 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
216 done
217 if test $ptrfound = '1' ; then
218 eval "HAVE_PTR0"$ii"=t"
219 else
220 eval "HAVE_PTR0"$ii"=f"
221 if test "x$ADM" = x -a "x$OADM" = x; then
222 # remove this ptr from the list of output variable to check
223 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
224 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
225 fi
226 fi
227 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
228 done
229 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
230 if test $tst != 1 ; then
231 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
232 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
233 echo "==> WARNING: in checked list:" $listVar 1>&2
234 #- put it back once:
235 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
236 fi
237 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
238 #- report to this experiment local summary file ---
239 echo "MACH='$MACH'" > $locDIR"/summary.txt"
240 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
241 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
242 grep '(PID\.TID 0000\.0001) n.. =' $1/$2/$OUTPUTFILE \
243 | sed 's/(PID.TID 0000.0001) //' >> $locDIR"/summary.txt"
244 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
245 #---
246 allargs=""
247 for xx in $listVar
248 do
249 case $xx in
250 'PS') if [ $debug -gt 0 ]
251 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
252 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
253 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
254 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
255 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
256 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
257 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
258 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
259 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
260 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
261 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
262 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
263 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
264 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
265 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
266 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
267 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
268 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
269 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
270 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
271 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
272 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
273 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
274 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
275 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
276 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
277 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
278 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
279 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
280 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
281 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
282 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
283 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
284 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
285 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
286 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
287 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
288 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
289 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
290 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
291 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
292 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
293 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
294 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
295 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
296 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
297 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
298 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
299 esac
300 if test $xx = $sVar
301 then allargs="$allargs > $yy <"
302 else allargs="$allargs $yy"
303 fi
304 done
305
306 nbVar=`echo $listVar | awk '{print NF}'`
307 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
308 #-- fill line (up to standard length) with dot:
309 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
310 echo $allargs $adNul
311 else
312 echo $allargs
313 fi
314 # <-- same processing for adjoint & forward test
315 }
316
317 genmakemodel()
318 {
319 # genmakemodel directory
320 if test "x$NOGENMAKE" = xt ; then
321 echo "genmake skipped!"
322 else
323 if test "x$BASH" = x ; then
324 GENMAKE2="../../../tools/genmake2"
325 else
326 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
327 fi
328 (
329 cd $1;
330 command="$GENMAKE2 -ds -m $MAKE"
331 if test "x$MKDEPEND" != x ; then
332 command="$command -makedepend=$MKDEPEND"
333 fi
334 if test "x$ADM" = xt ; then
335 command="$command --mods=../code_ad"
336 elif test "x$OADM" = xt ; then
337 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
338 else
339 command="$command -mods=../code"
340 fi
341 if test "x$OPTFILE" != xNONE ; then
342 command="$command -optfile=$OPTFILE"
343 fi
344 if test "x$IEEE" != x ; then
345 command="$command -ieee"
346 fi
347 if test "x$GSL" = xt ; then
348 command="$command -gsl"
349 fi
350 if test "x$MPI" != x0 ; then
351 command="$command -mpi"
352 fi
353 if test "x$MULTI_THREAD" = xt ; then
354 #- run multi-threaded using OpenMP:
355 command="$command -omp"
356 fi
357 if test "x$USE_R4" = xt ; then
358 command="$command -use_r4"
359 fi
360 if test "x$TS" = xt ; then
361 command="$command -ts"
362 fi
363 if test "x$PAPIS" = xt ; then
364 command="$command -papis"
365 else
366 if test "x$PCLS" = xt ; then
367 command="$command -pcls"
368 fi
369 fi
370 printf 'genmake ... '
371 eval $command > genmake.tr_log 2>&1
372 RETVAL=$?
373 # Reduce the size of the testing emails!
374 head -100 Makefile > $CDIR/Makefile_head
375 if test "x$RETVAL" != x0 ; then
376 tail genmake.tr_log
377 echo "genmakemodel: genmake failed"
378 cp genmake.log genmake_* genmake.tr_log $CDIR
379 return 1
380 else
381 echo "successful"
382 fi
383 )
384 fi
385 }
386
387 makeclean()
388 {
389 # makeclean directory
390 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
391 if test "x$NOCLEAN" = xt ; then
392 echo "make Clean skipped!"
393 else
394 (
395 cd $1;
396 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
397 if test -r Makefile ; then
398 printf 'clean build-dir: make Clean ... '
399 $MAKE Clean >> make.tr_log 2>&1
400 RETVAL=$?
401 if test "x$RETVAL" != x0 ; then
402 tail make.tr_log
403 echo "makeclean: \"make Clean\" failed"
404 cp make.tr_log genmake.log genmake.tr_log $CDIR
405 return 1
406 fi
407 echo successful
408 else
409 echo ''
410 fi
411 exit 0
412 )
413 fi
414 }
415
416 run_clean()
417 {
418 # run_clean directory
419 if test "x$NOCLEAN" = xt ; then
420 echo "run_clean skipped!"
421 else
422 (
423 cd $1;
424 printf 'clean run-dir ... '
425 # part of what is done after "make clean" when doing "make CLEAN"
426 find . -name "*.meta" -exec rm {} \;
427 find . -name "*.data" -exec rm {} \;
428 find . -name "fort.*" -exec rm {} \;
429 find . -type l -exec rm {} \;
430 rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime
431 rm -rf mnc_test_*
432 rm -f *_MIT_CE_000.opt0000 costfunction*0000
433 echo successful
434 exit 0
435 )
436 fi
437 }
438
439 makedependmodel()
440 {
441 # makedependmodel directory
442 if test "x$NODEPEND" = xt ; then
443 echo "make depend skipped!"
444 else
445 (
446 cd $1;
447 printf 'make depend ... '
448 $MAKE depend >> make.tr_log 2>&1
449 RETVAL=$?
450 if test "x$RETVAL" != x0 ; then
451 tail make.tr_log
452 echo "makedependmodel: make depend failed"
453 cp make.tr_log genmake.log genmake.tr_log $CDIR
454 return 1
455 else
456 echo successful
457 fi
458 )
459 fi
460 }
461
462 makemodel()
463 {
464 # makemodel directory
465 (
466 if test "x$NOMAKE" = xt ; then
467 cd $1;
468 if test -x $EXECUTABLE ; then
469 echo "make skipped!"
470 else
471 echo "no executable!"
472 return 2
473 fi
474 else
475 cd $1;
476 if test -r Makefile ; then
477 printf 'make ... '
478 if test "x$ADM" = xt ; then
479 $MAKE adall >> make.tr_log 2>&1
480 elif test "x$OADM" = xt ; then
481 $MAKE adAll >> make.tr_log 2>&1
482 else
483 if test "x$JOBS" = x ; then
484 $MAKE >> make.tr_log 2>&1
485 else
486 $MAKE -j $JOBS >> make.tr_log 2>&1
487 fi
488 fi
489 RETVAL=$?
490 if test "x$RETVAL" != x0 ; then
491 tail make.tr_log
492 echo failed
493 cp make.tr_log genmake.log genmake.tr_log $CDIR
494 rm -f $EXECUTABLE
495 return 1
496 else
497 echo successful
498 fi
499 fi
500 fi
501 )
502 }
503
504 mk_mpi_size()
505 {
506 # mk_mpi_size input_file output_file proc_Nb
507 #
508 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
509 # for an MPI build with no more than proc_Nb processors ;
510 # return the effective number of processors.
511
512 inp=$1
513 out=$2
514 np=$3
515 tmp=TTT.$$
516
517 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
518 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
519 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
520 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
521
522 #- find the largest divisor of input_file proc Nb, but not larger than $np
523 pp=0
524 for i in `seq 1 $px` ; do
525 if [ `expr $px % $i` -eq 0 ] ; then
526 for j in `seq 1 $py` ; do
527 if [ `expr $py % $j` -eq 0 ] ; then
528 ij=`expr $i \* $j`
529 if [ $ij -gt $pp ] ; then
530 if [ $ij -le $np ] ; then
531 ix=$i ; jy=$j ; pp=$ij
532 #echo " ix,jy= $ix,$jy"
533 fi
534 fi
535 fi
536 done
537 fi
538 done
539
540 #- create new SIZE.h type file:
541 sx=`expr $sx \* $px / $ix`
542 sy=`expr $sy \* $py / $jy`
543 if [ $verbose -gt 1 ]; then
544 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
545 fi
546 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
547 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
548 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
549 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
550 rm -f $tmp
551 return $pp
552 }
553
554 symlink_mpifiles()
555 {
556 # Put special links so that MPI specific files are used
557 # This MUST be invoked between makeclean and makelinks because
558 # the Makefile will link to non-mpi files by default
559
560 dir=$1
561 code_dir=$2
562 build_dir=$dir/$3
563
564 # These are files that should replace their counter-part when using -mpi
565 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
566
567 for ii in $MPI_FILES ; do
568 i=`echo $ii | sed 's:^\./::'`
569 name=`echo $i | sed 's:_mpi::'`
570 file="../$code_dir/$i"
571 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
572
573 # Is this an MPI run?
574 if test "x$MPI" = x0 ; then
575 # NO: We undo any _mpi symbolically linked files
576 if test -L $build_dir/$name ; then
577 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
578 RETVAL=$?
579 if test "x$RETVAL" = x0 ; then
580 if [ $verbose -gt 1 ]; then
581 echo " Un-linking $name from ../$code_dir" ; fi
582 rm -f $build_dir/$name
583 fi
584 fi
585 else
586 # YES: We symbolically link these files to the build
587 # dir so long as there is no real file in place
588 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
589 RETVAL=$?
590 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
591 if test "x$RETVAL" != x0 ; then
592 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
593 if test ! -r $build_dir/$name ; then
594 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
595 (cd $build_dir; ln -sf $file $name)
596 fi
597 fi
598 fi
599 done
600 }
601
602 linkdata()
603 {
604 # linkdata run_dir input_dir_1 input_dir_2 ...
605 #
606 # symbolically link data files to run directory
607 if test -d $1 ; then
608 (
609 cd $1 ; shift
610 echo 'linkdata from dirs:' $*
611 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
612 for xx in $inpMPI ; do
613 if test -r "../"$1"/"$xx ; then
614 # found 1 _mpi sfx file in 1rst input dir and it is readable
615 yy=`echo $xx | sed 's:\.mpi$::'`
616 if test "x$MPI" = "x0" ; then
617 # not mpi test: remove symbolic link
618 if test -h $yy ; then rm -f $yy ; fi
619 else
620 # mpi test: remove symbolic link & link .mpi sfx file
621 if test -h $yy ; then rm -f $yy ; fi
622 if test ! -r $yy ; then
623 ln -sf "../"$1"/"$xx $yy ;
624 printf " $xx" 1>&2
625 fi
626 fi
627 fi
628 done
629 if test -r "../"$1"/eedata.mth" ; then
630 # found eedata.mth in 1rst input dir and it is readable
631 if test "x$MULTI_THREAD" = "xt" ; then
632 # multi-threaded test: remove symbolic link & link eedata.mth
633 if test -h eedata ; then rm -f eedata ; fi
634 if test ! -r eedata ; then
635 ln -sf "../"$1"/eedata.mth" eedata ;
636 printf ' eedata.mth' 1>&2
637 fi
638 else
639 # not multi-threaded test: remove eedata symbolic link
640 if test -h eedata ; then rm -f eedata ; fi
641 fi
642 fi
643 prevDir='NONE'
644 for ldir in $* ; do
645 if test -d "../"$ldir -a $ldir != $prevDir ; then
646 printf " ldir=${ldir}:" 1>&2
647 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
648 for i in $files ; do
649 if test ! -d "../"$ldir/$i ; then
650 if test ! -r $i ; then
651 printf ' '$i 1>&2
652 ln -sf "../"$ldir"/"$i $i
653 fi
654 fi
655 done
656 printf ' ;' 1>&2
657 if test -x "../"$ldir"/"prepare_run ; then
658 "../"$ldir"/"prepare_run 1>&2
659 else
660 echo '' 1>&2
661 fi
662 fi
663 prevDir=$ldir
664 done
665 )
666 fi
667 }
668
669 runmodel()
670 {
671 # runmodel directory
672 #
673 # runs $COMMAND in "directory"
674 # (where "$COMMAND" is relative to "directory")
675 (
676 cd $1
677 printf 'runmodel in %s ... ' $1
678 if test -L $EXECUTABLE ; then
679 if test -x "../"$builddir"/"$EXECUTABLE ; then
680 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
681 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
682 else rm -f $EXECUTABLE
683 fi
684 fi
685 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
686 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
687 ln -sf "../"$builddir"/"$EXECUTABLE .
688 fi
689 if test "x$MPI" != x0 ; then
690 #- adjust the MPI run command with the right number of Procs
691 #echo "COMMAND='$COMMAND'"
692 COMMAND=`echo $COMMAND | sed "s/-np * XX /-np $NPROC_MPI /"`
693 #echo "COMMAND='$COMMAND'"
694 fi
695 if test ! -x $EXECUTABLE ; then
696 rm -f $RUNLOG ; touch $RUNLOG
697 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
698 echo " no executable:" $EXECUTABLE >> $RUNLOG
699 RETVAL=8
700 ENDVAL=-1
701 else
702 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
703 # output do not exist or is older than executable:
704 rm -f $RUNLOG ; touch $RUNLOG
705 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
706 ( eval $COMMAND ) >> $RUNLOG 2>&1
707 RETVAL=$?
708 else
709 RETVAL=0
710 if test -f $RUNLOG ; then
711 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
712 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
713 else
714 touch $RUNLOG
715 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
716 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
717 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
718 fi
719 fi
720 #ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
721 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
722 fi
723 rm -f run.log_tmp
724 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
725 echo successful
726 printf '=> output from running in %s :\n' $1 1>&2
727 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
728 # === Reduce the size of the testing emails!
729 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
730 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
731 return 0
732 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
733 #-- for some weird cases (run is finihed but with error code)
734 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
735 printf '=> output from running in %s :\n' $1 1>&2
736 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
737 return 0
738 else
739 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
740 printf '=> output from running in %s :\n' $1 1>&2
741 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
742 cp $RUNLOG $CDIR"/"$RUNLOG
743 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
744 return 1
745 fi
746 )
747 }
748
749 createcodelet()
750 {
751 # create codelet for comparing model output
752
753 printf "creating the comparison code (using CC=$CC)... "
754 cat > tr_cmpnum.c <<EOF
755 #include <stdio.h>
756 #include <math.h>
757 int main( int argc, char** argv ) {
758 int linnum,cmplin,best,lncnt;
759 double a,b,abave,relerr;
760 best = -22;
761 lncnt = 0;
762 while( 1 & ( (lncnt+=1) < 999 ) ) {
763 scanf("%d", &linnum);
764 if (linnum == -1) break;
765 scanf("%lf", &a); scanf("%lf", &b);
766 abave = 0.5*(fabs(a)+fabs(b));
767 if ( abave == abave ) {
768 if (abave > 0.0) {
769 relerr=fabs(a-b)/abave;
770 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
771 else { cmplin = -16 ; }
772 best = (best > cmplin) ? best : cmplin; }
773 else { cmplin = -22 ; }
774 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
775 }
776 else {
777 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
778 break; }
779 }
780 if (lncnt == 999) best=-29;
781 if (linnum != -1) best=-99;
782 printf("%d\n", -best);
783 return 0;
784 }
785 EOF
786 $CC -o tr_cmpnum tr_cmpnum.c -lm
787
788 if [ -x ./tr_cmpnum ]; then
789 echo "OK"
790 return 0
791 else
792 echo
793 echo "ERROR: failed to compile comparison code -- please specify"
794 echo " a C compiler using the CC environment variable."
795 exit 1
796 fi
797 }
798
799 formatresults()
800 {
801 # formatresults expt genmake depend make run results*
802
803 nm=$1
804 printf '%s %s %s %s' $2 $3 $4 $5
805 shift; shift; shift; shift; shift;
806 listPrt=$@
807 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
808 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
809 printf '%3s' $listPrt
810 # line below does not work on hp-ux_ia64 : do those substitutions later on
811 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
812
813 if [ $xx = '..' ]; then
814 printf ' N/O '
815 elif [ $xx = '--' ]; then
816 printf ' N/O '
817 elif [ $xx = 99 ]; then
818 printf ' N/O '
819 else
820 if [ $xx -ge $MATCH_CRIT ]; then
821 printf ' pass'
822 else
823 printf ' FAIL'
824 fi
825 fi
826 printf ' %s' $nm
827 printf '\n'
828
829 }
830
831 scandirs()
832 {
833 if [ $# -eq 1 ]; then
834 for arg in * ; do
835 test -f $arg/$1 && echo $arg
836 done
837 else
838 echo $*
839 fi
840 }
841
842
843 check_eedata()
844 {
845 # check_eedata size.h eedata
846 if [ $# -eq 2 ] ; then
847 if test -f $1 -a -f $2 ; then
848 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
849 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
850 if test "x$nx" = x ; then
851 rx=10
852 else
853 rx=`expr $sx % $nx`
854 fi
855 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
856 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
857 if test "x$ny" = x ; then
858 ry=20
859 else
860 ry=`expr $sy % $ny`
861 fi
862 echo `expr $rx + $ry`
863 else
864 echo '-1'
865 fi
866 else
867 echo '-2'
868 fi
869
870 }
871
872 ###############################################################################
873
874
875 # Default properties
876 debug=0
877 verbose=1
878 clean=0
879
880 IEEE=true
881 if test "x$MITGCM_IEEE" != x ; then
882 IEEE=$MITGCM_IEEE
883 fi
884 GSL=f
885
886 CLEANUP=f
887 NORUN=f
888 QUICK=f
889 NOMAKE=f
890 NOGENMAKE=f
891 NOCLEAN=f
892 NODEPEND=f
893 POSTCLEAN=f
894
895 BASH=
896 OPTFILE=NONE
897 ADDRESSES=
898 TESTDIRS=
899 SKIPDIRS=
900 MPACKDIR="../tools/mpack-1.6"
901 HAVE_MPACK=
902 MPACK=
903 COMMAND=
904 MKDEPEND=
905 if test "x$MAKE" = x ; then
906 MAKE=make
907 fi
908 if test "x$CC" = x ; then
909 CC=cc
910 fi
911 JOBS=
912 MPI=0
913 MULTI_THREAD=f
914 OUTDIR=
915 DELDIR=
916 USE_R4=
917
918 ADM=
919 OADM=
920
921 # list of pTracers to check for monitor output
922 PTRACERS_NUM="1 2 3 4 5"
923
924 MATCH_CRIT=10
925
926 printf "parsing options... "
927
928 ac_prev=
929 for ac_option ; do
930
931 # If the previous option needs an argument, assign it.
932 if test -n "$ac_prev"; then
933 eval "$ac_prev=\$ac_option"
934 ac_prev=
935 continue
936 fi
937
938 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
939
940 case $ac_option in
941
942 -help | --help | -h | --h)
943 usage ;;
944
945 -optfile | --optfile | -of | --of)
946 ac_prev=OPTFILE ;;
947 -optfile=* | --optfile=* | -of=* | --of=*)
948 OPTFILE=$ac_optarg ;;
949
950 -addr | --addr | -a | --a)
951 ac_prev=ADDRESSES ;;
952 -addr=* | --addr=* | -a=* | --a=*)
953 ADDRESSES=$ac_optarg ;;
954 -mpackdir | --mpackdir | -mpd | --mpd)
955 ac_prev=MPACKDIR ;;
956 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
957 MPACKDIR=$ac_optarg ;;
958
959 -tdir | --tdir | -t | --t)
960 ac_prev=TESTDIRS ;;
961 -tdir=* | --tdir=* | -t=* | --t=*)
962 TESTDIRS=$ac_optarg ;;
963
964 -skipdir | --skipdir | -skd | --skd)
965 ac_prev=SKIPDIRS ;;
966 -skipdir=* | --skipdir=* | -skd=* | --skd=*)
967 SKIPDIRS=$ac_optarg ;;
968
969 -bash | --bash | -b | --b)
970 ac_prev=BASH ;;
971 -bash=* | --bash=* | -b=* | --b=*)
972 BASH=$ac_optarg ;;
973
974 -command | --command | -c | --c)
975 ac_prev=COMMAND ;;
976 -command=* | --command=* | -c=* | --c=*)
977 COMMAND=$ac_optarg ;;
978
979 -makedepend | --makedepend | -md | --md)
980 ac_prev=MKDEPEND ;;
981 -makedepend=* | --makedepend=* | -md=* | --md=*)
982 MKDEPEND=$ac_optarg ;;
983
984 -make | --make | -m | --m)
985 ac_prev=MAKE ;;
986 -make=* | --make=* | -m=* | --m=*)
987 MAKE=$ac_optarg ;;
988
989 -odir | --odir)
990 ac_prev=OUTDIR ;;
991 -odir=* | --odir=*)
992 OUTDIR=$ac_optarg ;;
993
994 -ptracers | --ptracers | -ptr | --ptr)
995 ac_prev=PTRACERS_NUM ;;
996 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
997 PTRACERS_NUM=$ac_optarg ;;
998
999 -match | --match ) ac_prev=MATCH_CRIT ;;
1000 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1001
1002 -j | --j) ac_prev=JOBS ;;
1003 -j=* | --j=*) JOBS=$ac_optarg ;;
1004
1005 -clean | --clean)
1006 CLEANUP=t ; DELDIR=t ;;
1007
1008 -norun | --norun | -nr | --nr)
1009 NORUN=t ;;
1010 -runonly | --runonly | -ro | --ro)
1011 QUICK=t ; NOMAKE=t ;;
1012 -quick | --quick | -q | --q)
1013 QUICK=t ;;
1014 -nogenmake | --nogenmake | -ng | --ng)
1015 NOGENMAKE=t ;;
1016 -noclean | --noclean | -nc | --nc)
1017 NOCLEAN=t ;;
1018 -nodepend | --nodepend | -nd | --nd)
1019 NODEPEND=t ;;
1020
1021 -postclean | --postclean | -pc | --pc)
1022 POSTCLEAN=t ;;
1023
1024 -mpi | --mpi) MPI=2 ;;
1025 -MPI | --MPI) ac_prev=MPI ;;
1026 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1027
1028 -mth) MULTI_THREAD=t ;;
1029
1030 -adm | -ad) ADM=t ;;
1031
1032 -oad) OADM=t; NODEPEND=t ;;
1033
1034 -ieee) IEEE=true ;;
1035 -noieee) IEEE= ;;
1036 -gsl) GSL=t ;;
1037
1038 -verbose) verbose=2 ;;
1039 -debug) debug=1 ;;
1040 -quiet) verbose=0 ;;
1041
1042 -deldir | -dd) DELDIR=t ;;
1043
1044 -use_r4|-ur4) USE_R4=t ;;
1045
1046 -ts) TS=t;;
1047 -papis) PAPIS=t;;
1048 -pcls) PCL=t;;
1049
1050 -*)
1051 echo "Error: unrecognized option: "$ac_option
1052 usage
1053 ;;
1054
1055 *)
1056 echo "Error: unrecognized argument: "$ac_option
1057 usage
1058 ;;
1059
1060 esac
1061
1062 done
1063
1064 if test "x$QUICK" = xt ; then
1065 NOGENMAKE=t
1066 NOCLEAN=t
1067 NODEPEND=t
1068 fi
1069
1070 #- setting for forward or ADM testing
1071 if test "x$ADM" = xt ; then
1072 code_dir=code_ad
1073 inputdir=input_ad
1074 ref_outp="output_adm.txt"
1075 EXECUTABLE="mitgcmuv_ad"
1076 elif test "x$OADM" = xt ; then
1077 code_dir=code_oad
1078 inputdir=input_oad
1079 ref_outp="output_oadm.txt"
1080 EXECUTABLE="mitgcmuv_ad"
1081 else
1082 code_dir=code
1083 inputdir=input
1084 ref_outp="output.txt"
1085 EXECUTABLE="mitgcmuv"
1086 fi
1087
1088 xx=`echo $TESTDIRS | awk '{print $1}'`
1089 if test "x$TESTDIRS" = x ; then
1090 LIST=`scandirs results/$ref_outp`
1091 elif test $xx = 'start_from' ; then
1092 xx=`echo $TESTDIRS | awk '{print $2}'`
1093 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1094 else
1095 #- expand group of experiments:
1096 LIST=" "
1097 for xx in $TESTDIRS
1098 do
1099 case $xx in
1100 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1101 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1102 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1103 ;;
1104 'tutorials')
1105 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1106 *) LIST=${LIST}" "$xx ;;
1107 esac
1108 done
1109 fi
1110 #echo 'LIST='${LIST}'<'
1111 #- skip dirs, remove duplicate and non-directory:
1112 TESTDIRS=" "
1113 count=0
1114 for xx in $LIST
1115 do
1116 yy=`echo $SKIPDIRS | grep -c $xx`
1117 if test $yy = 0 ; then
1118 if test -d $xx ; then
1119 yy=`echo $TESTDIRS | grep -c $xx`
1120 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1121 else count=1 ;
1122 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1123 fi
1124 else
1125 if test $count = 1 ; then echo -n ", \"$xx\""
1126 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1127 fi
1128 fi
1129 done
1130 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1131 #echo 'TESTDIRS='${TESTDIRS}'<'
1132
1133 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1134 OPTFILE=$MITGCM_OF
1135 fi
1136
1137 RUNLOG="run.tr_log"
1138 OUTPUTFILE=$ref_outp
1139 if test "x$COMMAND" = x ; then
1140 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1141 fi
1142 if test "x$MPI" != x0 ; then
1143 OUTPUTFILE="STDOUT.0000"
1144 fi
1145
1146 echo "OK (COMMAND= $COMMAND )"
1147
1148 # set the Default List of output variables to be checked:
1149 # (use default or load experiment-specific list from file "tr_checklist")
1150 # content : 1rst = main variable used to decide if it pass or FAIL
1151 # others = number of matching digits to be printed in summary.txt
1152 if test "x$ADM" = x -a "x$OADM" = x; then
1153 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1154 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1155 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1156 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1157 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1158 else
1159 DEF_CHECK_LIST='Grad Cost Grad'
1160 EMPTY_RESULTS='.. ..'
1161 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1162 fi
1163
1164 # create the FORTRAN comparison code
1165 if test -x tr_cmpnum ; then
1166 echo "skipping comparison code build"
1167 else
1168 createcodelet
1169 fi
1170
1171 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1172 if test "x$ADDRESSES" = x ; then
1173 echo "skipping mpack build"
1174 else
1175 build_mpack
1176 fi
1177
1178 # Create a uniquely named directory to store results
1179 CMDLINE=$0
1180 for xx in "$@" ; do nw=`echo $xx | wc -w`
1181 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1182 else CMDLINE="$CMDLINE '$xx'" ; fi
1183 done
1184 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1185 MACH=`hostname`
1186 UNAMEA=`uname -a`
1187 DATE=`date +%Y%m%d`
1188 BASE="tr_"$MACH"_"$DATE"_"
1189 if test "x$OUTDIR" != x ; then
1190 BASE="tr_"$OUTDIR"_"$DATE"_"
1191 else
1192 short_name=`hostname | sed 's/\..*$//'`
1193 BASE="tr_"$short_name"_"$DATE"_"
1194 fi
1195 DNUM=0
1196 DRESULTS="$BASE$DNUM"
1197 while test -e $DRESULTS ; do
1198 DNUM=$(( $DNUM + 1 ))
1199 DRESULTS="$BASE$DNUM"
1200 done
1201 mkdir $DRESULTS
1202 RETVAL=$?
1203 if test "x$RETVAL" != x0 ; then
1204 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1205 exit 1
1206 fi
1207 SUMMARY="$DRESULTS/summary.txt"
1208 start_date=`date`
1209 echo $start_date > $SUMMARY
1210 echo 'run:' $CMDLINE >> $SUMMARY
1211 echo 'on :' $UNAMEA >> $SUMMARY
1212
1213 of_path=
1214 if test "x$OPTFILE" != xNONE ; then
1215 if test -r $OPTFILE ; then
1216 # get the path
1217 path=${OPTFILE%/*}
1218 if test "x$path" = x ; then
1219 of_path=`pwd`
1220 else
1221 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1222 fi
1223 file=${OPTFILE##*/}
1224 OPTFILE=$of_path/$file
1225 cp $OPTFILE $DRESULTS
1226 echo >> $SUMMARY
1227 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1228 else
1229 echo | tee $SUMMARY
1230 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1231 exit 1
1232 fi
1233 else
1234 echo >> $SUMMARY
1235 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1236 #-note: to be filled later after 1rst run
1237 fi
1238 echo
1239 echo >> $SUMMARY
1240 if test "x$ADM" = x -a "x$OADM" = x; then
1241 if [ $MATCH_CRIT -lt 10 ] ;
1242 then line_0="default "$MATCH_CRIT ;
1243 else line_0="default "$MATCH_CRIT ; fi
1244 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1245 line_1="G D M c m s m s m s m s"
1246 line_2="E p a R g m m e . m m e . m m e . m m e ."
1247 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1248 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1249 for ii in $PTRACERS_NUM ; do
1250 line_0="$line_0 --PTR 0"$ii"--"
1251 line_1="$line_1 m s"
1252 line_2="$line_2 m m e ."
1253 line_3="$line_3 i a a d"
1254 line_4="$line_4 n x n ."
1255 done
1256 echo "$line_0" | tee -a $SUMMARY
1257 echo "$line_1" | tee -a $SUMMARY
1258 echo "$line_2" | tee -a $SUMMARY
1259 echo "$line_3" | tee -a $SUMMARY
1260 echo "$line_4" | tee -a $SUMMARY
1261 echo " " | tee -a $SUMMARY
1262 else
1263 echo "ADJOINT=true" >> $SUMMARY
1264 echo >> $SUMMARY
1265 if [ $MATCH_CRIT -lt 10 ] ;
1266 then line_0="default "$MATCH_CRIT ;
1267 else line_0="default "$MATCH_CRIT ; fi
1268 echo "$line_0" | tee -a $SUMMARY
1269 cat << EOF | tee -a $SUMMARY
1270 G D M C G
1271 E p a R o r
1272 N n k u s a
1273 2 d e n t d
1274
1275 EOF
1276 fi
1277 echo "-------------------------------------------------------------------------------"
1278
1279 # ...and each test directory...
1280 for dir in $TESTDIRS ; do
1281
1282 # set builddir & rundir:
1283 builddir="build"
1284 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1285 rundir="run"
1286 pfxdir="tr_$rundir"
1287 if test ! -d $dir/$rundir ; then
1288 rundir=$builddir
1289 fi
1290 CODE_DIR=$dir/$code_dir
1291 BUILD_DIR=$dir/$builddir
1292
1293 # Cleanup only!
1294 if test "x$CLEANUP" = xt ; then
1295 echo -n ' --- dir:' $BUILD_DIR ': '
1296 makeclean $BUILD_DIR
1297 ( cd $BUILD_DIR
1298 rm -f $EXECUTABLE *.bak
1299 rm -f genmake_state genmake_*optfile genmake.log
1300 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1301 )
1302 if test -d $dir/$rundir/CVS ; then
1303 echo -n ' --- dir:' $dir/$rundir ': '
1304 run_clean $dir/$rundir
1305 fi
1306 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1307 ttd=`echo $trdir | wc -w`
1308 if test $ttd != 0 ; then
1309 echo ' --- rm dir:' $trdir
1310 ( cd $dir ; rm -rf $trdir )
1311 fi
1312 continue
1313 fi
1314
1315 # Verify that the testdir exists and contains previous
1316 # results in the correct location--or skip this directory!
1317 fout=$dir"/results/"$ref_outp
1318 if test ! -r $fout ; then
1319 echo "can't read \"$fout\" -- skipping $dir"
1320 continue
1321 fi
1322
1323 # Check for specific files for particular type of run
1324
1325 if test "x$MPI" != "x0" ; then
1326 if test -r $CODE_DIR"/SIZE.h_mpi" ; then
1327 #- create new SIZE.h with no more than '$MPI' Procs
1328 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI
1329 NPROC_MPI=$?
1330 ( cd $BUILD_DIR
1331 if test -r SIZE.h.mpi ; then
1332 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1333 else RETVAL=1
1334 fi
1335 if test "x$RETVAL" = x0 ; then
1336 rm -f tr_size.mpi
1337 else
1338 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1339 fi
1340 )
1341 else
1342 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1343 continue
1344 fi
1345 fi
1346 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1347 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1348 continue
1349 fi
1350 if test "x$MPI" != "x0" -a "x$MULTI_THREAD" = "xt" ; then
1351 retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/input/eedata.mth"`
1352 if test $retv != 0 ; then
1353 echo "input/eedata.mth tiling misfit -- skipping $dir"
1354 continue
1355 fi
1356 fi
1357
1358 # Check whether there are "extra runs" for this testdir
1359 extra_runs=
1360 if test "x$NORUN" = xf ; then
1361 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1362 fi
1363 #echo "ex_run_dirs='$ex_run_dirs'"
1364 for exd in $ex_run_dirs ; do
1365 name=`echo $exd | sed -e "s/$inputdir\.//"`
1366 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1367 outf="$dir/results/$refExOut"
1368 if test -f $outf -a -r $outf ; then
1369 if test "x$MULTI_THREAD" = "xt" ; then
1370 if test -r $dir"/"$exd"/eedata.mth" ; then
1371 if test "x$MPI" = "x0" ; then
1372 extra_runs="$extra_runs $name"
1373 else
1374 retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/"$exd"/eedata.mth"`
1375 if test $retv = 0 ; then
1376 extra_runs="$extra_runs $name"
1377 else
1378 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1379 fi
1380 fi
1381 #else echo $dir"/"$exd"/eedata.mth: not found"
1382 fi
1383 else
1384 extra_runs="$extra_runs $name"
1385 fi
1386 fi
1387 done
1388
1389 echo
1390 if test "x$extra_runs" = "x" ; then
1391 echo "Experiment: $dir"
1392 else
1393 echo "Experiment: $dir ; extra_runs=$extra_runs"
1394 fi
1395 echo
1396 unset genmake makedepend make run
1397 results=$EMPTY_RESULTS
1398
1399 # Create an output dir for each OPTFILE/tdir combination
1400 locDIR=$DRESULTS"/"$dir
1401 mkdir $locDIR
1402 CDIR=`pwd`"/$locDIR"
1403
1404 if test "x$NORUN" = xt ; then
1405 run=N
1406 genmakemodel $dir/$builddir && genmake=Y \
1407 && makeclean $dir/$builddir \
1408 && symlink_mpifiles $dir $code_dir $builddir \
1409 && makedependmodel $dir/$builddir && makedepend=Y \
1410 && makemodel $dir/$builddir && make=Y
1411 else
1412 genmakemodel $dir/$builddir && genmake=Y \
1413 && makeclean $dir/$builddir \
1414 && symlink_mpifiles $dir $code_dir $builddir \
1415 && makedependmodel $dir/$builddir && makedepend=Y \
1416 && makemodel $dir/$builddir && make=Y \
1417 && run_clean $dir/$rundir \
1418 && linkdata $dir/$rundir $inputdir \
1419 && runmodel $dir/$rundir && run=Y \
1420 && results=`testoutput_run $dir $rundir $ref_outp`
1421 fi
1422 #echo "results='$results'"
1423
1424 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1425 echo 1>&2
1426 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1427 touch $locDIR"/summary.txt"
1428 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1429 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1430 if test "x$ADM" = xt ; then
1431 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1432 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1433 >> $locDIR"/summary.txt"
1434 fi
1435
1436 for ex in $extra_runs ; do
1437 unset run
1438 results=$EMPTY_RESULTS
1439 # reference output file
1440 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1441 # Create an output dir for each OPTFILE/tdir.ex combination
1442 locDIR=$DRESULTS"/"$dir"."$ex
1443 mkdir $locDIR
1444 CDIR=`pwd`"/$locDIR"
1445 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1446 run_clean $dir/$pfxdir.$ex
1447 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1448 runmodel $dir/$pfxdir.$ex && run=Y \
1449 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1450 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1451 fres="$fres.$ex"
1452 echo 1>&2
1453 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1454 touch $locDIR"/summary.txt"
1455 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1456 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1457 if test "x$ADM" = xt ; then
1458 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1459 grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \
1460 >> $locDIR"/summary.txt"
1461 fi
1462 if test "x$POSTCLEAN" = xt ; then
1463 run_clean $dir/$pfxdir.$ex
1464 fi
1465 done
1466
1467 if test -f $DRESULTS"/"genmake_state ; then : ; else
1468 if test -f $dir/$builddir/Makefile ; then
1469 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1470 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1471 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1472 echo " $mkOpt" >> $DRESULTS/genmake_state
1473 if test "x$OPTFILE" = xNONE ; then
1474 eval $mkOpt
1475 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1476 $SUMMARY > tr_0.tmp_log
1477 RETVAL=$?
1478 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1479 cp tr_0.tmp_log $SUMMARY
1480 else rm -f tr_0.tmp_log
1481 fi
1482 fi
1483 gmkLog=$dir/$builddir/genmake.log
1484 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1485 RETVAL=$?
1486 if test "x$RETVAL" = x0 ; then
1487 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1488 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1489 | grep -v '^... compiler version ' > tr_1.tmp_log
1490 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1491 >> $DRESULTS/genmake_state
1492 rm -f tr_1.tmp_log
1493 fi
1494 fi
1495 fi
1496 #postclean $dir/$builddir
1497 if test "x$POSTCLEAN" = xt ; then
1498 makeclean $dir/$builddir \
1499 && run_clean $dir/$rundir
1500 fi
1501
1502 echo "-------------------------------------------------------------------------------"
1503
1504 done
1505
1506 printf "Start time: " >> $SUMMARY
1507 echo "$start_date" >> $SUMMARY
1508 printf "End time: " >> $SUMMARY
1509 date >> $SUMMARY
1510
1511 # If addresses were supplied and mpack built successfully, then try
1512 # to send email using mpack.
1513 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1514 echo "No results email was sent."
1515 else
1516 if test "x$HAVE_MPACK" = xt ; then
1517 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1518 && gzip $DRESULTS".tar" \
1519 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1520 RETVAL=$?
1521 if test "x$RETVAL" != x0 ; then
1522 echo
1523 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1524 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1525 echo " summary of results from the directory \"$DRESULTS\"."
1526 echo
1527 else
1528 echo
1529 echo "An email containing results was sent to the following addresses:"
1530 echo " \"$ADDRESSES\""
1531 echo
1532 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1533 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1534 fi
1535 fi
1536 fi
1537
1538 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1539 rm -f tr_cmpnum.c tr_cmpnum
1540 fi
1541
1542 if test "x$CLEANUP" != xt ; then
1543 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1544 if test -e tr_out.txt ; then
1545 mv tr_out.txt tr_out.txt.old
1546 fi
1547 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1548 fi
1549
1550 if test "x$DELDIR" = xt ; then
1551 rm -rf $DRESULTS
1552 fi

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