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Revision 1.153 - (show annotations) (download)
Wed Dec 29 22:35:50 2010 UTC (13 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.152: +3 -2 lines
check for normal end of execution from (standard) output file instead of
run-log file (not expected to be cut in pieces when different procs print
at the same time into single run-log file).

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.152 2010/12/17 17:32:24 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
20 echo " (-optfile|-of) STRING list of optfiles to use"
21 echo " (-addr|-a) STRING list of email recipients"
22 echo " (DEF=\"\" no email is sent)"
23 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
24 echo " (DEF=\"../tools/mpack-1.6\")"
25 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
26 echo " (recognized groups: basic, tutorials)"
27 echo " (DEF=\"\" which test all)"
28 echo " (if list= 'start_from THIS_EXP' then"
29 echo " test THIS_EXP + all the following)"
30 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
31 echo " (DEF=\"\" which test all)"
32 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
33 echo " Bourne-compatible \"sh\" shell"
34 echo " (DEF=\"\" for \"bash\")"
35 echo " (-adm|-ad) perform an adjoint run"
36 echo " (-oad) perform an OpenAD adjoint run"
37 echo " (-command|-c) STRING command to run"
38 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
39 echo " (-make|-m) STRING command to use for \"make\""
40 echo " (DEF=\"make\")"
41 echo " (-odir) STRING used to build output directory name"
42 echo " (DEF=\"hostname\")"
43 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
44 echo " (DEF=\"1 2 3 4 5\")"
45 echo " (-match) NUMBER Matching Criteria (number of digits)"
46 echo " (DEF=\"$MATCH_CRIT\")"
47 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
48 echo " (-clean) *ONLY* run \"make CLEAN\""
49 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
50 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
51 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
52 echo " (-nogenmake|-ng) skip the genmake stage"
53 echo " (-noclean|-nc) skip the \"make clean\" stage"
54 echo " (-nodepend|-nd) skip the \"make depend\" stage"
55 echo " (-deldir|-dd) on success, delete the output directory"
56 echo " (-ts) provide timing information per timestep"
57 echo " (-papis) provide MFlop/s per timestep using PAPI"
58 echo " (-pcls) provide MFlop/s per timestep using PCL"
59 echo
60 echo "and where STRING can be a whitespace-delimited list"
61 echo "such as:"
62 echo
63 echo " -t 'exp0 exp2 exp3' "
64 echo " -addr='abc@123.com testing@home.org'"
65 echo
66 echo "provided that the expression is properly quoted within the current"
67 echo "shell (note the use of single quotes to protect white space)."
68 echo
69 exit 1
70 }
71
72 # build the mpack utility
73 build_mpack()
74 {
75 printf "building the mpack utility... "
76 MPACK="$MPACKDIR/mpack"
77 if test ! -x $MPACK ; then
78 if test ! -d $MPACKDIR ; then
79 echo
80 echo "Error: can't find \"$MPACKDIR\""
81 echo " are you sure this program is being run in the correct "
82 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
83 echo
84 HAVE_MPACK=f
85 fi
86 if test "x$CC" = x ; then
87 export CC=cc
88 fi
89 printf "building mpack (using CC=$CC)... "
90 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
91 RETVAL=$?
92 if test "x$RETVAL" != x0 ; then
93 echo
94 echo "Error building the mpack tools at: $MPACK_DIR"
95 echo
96 HAVE_MPACK=f
97 else
98 rm -f tr_build_mpack.out
99 HAVE_MPACK=t
100 echo "done"
101 fi
102 else
103 HAVE_MPACK=t
104 echo "already exist"
105 fi
106 }
107
108 testoutput_var()
109 {
110 # testoutput_var dir s1 label subdir reference_output
111 #
112 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
113 # with same output from reference file $dir/results/$reference_output
114 # using search strings s1 and text label
115
116 if [ $debug -gt 0 ]; then
117 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
118 fi
119 if [ -r $1/$4/$OUTPUTFILE ]; then
120 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
121 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
122 if [ $lncntA -lt 2 ]; then
123 if [ $verbose -gt 0 ]; then
124 echo Not enough lines of output when searching for "$2" 1>&2
125 fi
126 return 99
127 fi
128 else
129 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
130 return 99
131 fi
132 if [ $debug -gt 0 ]; then
133 echo testoutput_var: grep "$2" $1/results/$5 1>&2
134 fi
135 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
136 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
137 if [ $lncntB -lt 2 ]; then
138 if [ $verbose -gt 0 ]; then
139 echo Not enough lines of output when searching for "$2" 1>&2
140 fi
141 return 99
142 fi
143 if [ $lncntA -ne $lncntB ]; then
144 if [ $verbose -gt 0 ]; then
145 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
146 fi
147 return 99
148 fi
149 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
150 if [ $has_nan -gt 0 ] ; then
151 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
152 return 99
153 fi
154 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
155 if [ $has_inf -gt 0 ] ; then
156 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
157 return 99
158 fi
159 if [ $debug -gt 0 ]; then
160 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
161 fi
162 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
163 if [ $debug -gt 0 ]; then
164 echo testoutput_var: compare_lines 1>&2
165 fi
166 if [ $verbose -gt 1 ]; then
167 cat tmp3.txt 1>&2
168 fi
169 echo "-1" >> tmp3.txt
170 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
171 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
172 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
173 if [ $digits_of_similarity -eq 99 ]; then
174 if [ $verbose -gt 0 ]; then
175 echo testoutput_var: No comparison was available for \"$3\" 1>&2
176 fi
177 digits_of_similarity=99
178 else
179 if [ $verbose -gt 0 ]; then
180 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
181 fi
182 fi
183 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
184
185 return $digits_of_similarity
186 }
187
188 testoutput_run()
189 {
190 # testoutput_run directory subdir reference_output
191 #
192 # test output from 1 run in "directory"
193 # --> same processing for adjoint & forward test
194 # default list of output variables to be checked:
195 # 1rst : main variable used to decide if it pass or FAIL
196 # others : number of matching digits to be printed in summary.txt
197 listChk=$DEF_CHECK_LIST
198 # load experiment-specific list from file "tr_checklist" (if it exist)
199 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
200 sVar=`echo $listChk | awk '{print $1}'`
201 # remove 1rst var and expand the list: + => min max mean s.d
202 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
203 | sed 's/+//g' | sed "s/^$sVar//"`
204 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
205 # check for ptracer output in reference_output file :
206 outpref=$1/results/$3
207 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
208 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
209 for ii in $PTRACERS_NUM ; do
210 ptrfound=0
211 for jj in $ptr_mon ; do
212 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
213 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
214 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
215 done
216 if test $ptrfound = '1' ; then
217 eval "HAVE_PTR0"$ii"=t"
218 else
219 eval "HAVE_PTR0"$ii"=f"
220 if test "x$ADM" = x -a "x$OADM" = x; then
221 # remove this ptr from the list of output variable to check
222 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
223 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
224 fi
225 fi
226 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
227 done
228 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
229 if test $tst != 1 ; then
230 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
231 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
232 echo "==> WARNING: in checked list:" $listVar 1>&2
233 #- put it back once:
234 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
235 fi
236 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
237 echo "listVar='$listVar'" > $locDIR"/summary.txt"
238 allargs=""
239 for xx in $listVar
240 do
241 case $xx in
242 'PS') if [ $debug -gt 0 ]
243 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
244 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
245 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
246 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
247 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
248 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
249 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
250 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
251 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
252 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
253 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
254 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
255 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
256 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
257 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
258 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
259 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
260 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
261 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
262 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
263 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
264 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
265 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
266 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
267 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
268 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
269 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
270 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
271 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
272 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
273 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
274 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
275 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
276 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
277 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
278 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
279 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
280 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
281 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
282 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
283 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
284 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
285 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
286 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
287 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
288 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
289 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
290 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
291 esac
292 if test $xx = $sVar
293 then allargs="$allargs > $yy <"
294 else allargs="$allargs $yy"
295 fi
296 done
297
298 nbVar=`echo $listVar | awk '{print NF}'`
299 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
300 #-- fill line (up to standard length) with dot:
301 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
302 echo $allargs $adNul
303 else
304 echo $allargs
305 fi
306 # <-- same processing for adjoint & forward test
307 }
308
309 genmakemodel()
310 {
311 # genmakemodel directory
312 if test "x$NOGENMAKE" = xt ; then
313 echo "genmake skipped!"
314 else
315 if test "x$BASH" = x ; then
316 GENMAKE2="../../../tools/genmake2"
317 else
318 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
319 fi
320 (
321 cd $1;
322 command="$GENMAKE2 -ds -m $MAKE"
323 if test "x$MKDEPEND" != x ; then
324 command="$command -makedepend=$MKDEPEND"
325 fi
326 if test "x$ADM" = xt ; then
327 command="$command --mods=../code_ad"
328 elif test "x$OADM" = xt ; then
329 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
330 else
331 command="$command -mods=../code"
332 fi
333 if test "x$OPTFILE" != xNONE ; then
334 command="$command -optfile=$OPTFILE"
335 fi
336 if test "x$IEEE" != x ; then
337 command="$command -ieee"
338 fi
339 if test "x$GSL" = xt ; then
340 command="$command -gsl"
341 fi
342 if test "x$MPI" = xt ; then
343 command="$command -mpi"
344 fi
345 if test "x$MULTI_THREAD" = xt ; then
346 #- run multi-threaded using OpenMP:
347 command="$command -omp"
348 fi
349 if test "x$USE_R4" = xt ; then
350 command="$command -use_r4"
351 fi
352 if test "x$TS" = xt ; then
353 command="$command -ts"
354 fi
355 if test "x$PAPIS" = xt ; then
356 command="$command -papis"
357 else
358 if test "x$PCLS" = xt ; then
359 command="$command -pcls"
360 fi
361 fi
362 printf 'genmake ... '
363 eval $command > genmake.tr_log 2>&1
364 RETVAL=$?
365 # Reduce the size of the testing emails!
366 head -100 Makefile > $CDIR/Makefile_head
367 if test "x$RETVAL" != x0 ; then
368 tail genmake.tr_log
369 echo "genmakemodel: genmake failed"
370 cp genmake.log genmake_* genmake.tr_log $CDIR
371 return 1
372 else
373 echo "successful"
374 fi
375 )
376 fi
377 }
378
379 makeclean()
380 {
381 # makeclean directory
382 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
383 if test "x$NOCLEAN" = xt ; then
384 echo "make Clean skipped!"
385 else
386 (
387 cd $1;
388 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
389 if test -r Makefile ; then
390 printf 'clean build-dir: make Clean ... '
391 rm -f Makefile.old
392 $MAKE Clean >> make.tr_log 2>&1
393 RETVAL=$?
394 if test "x$RETVAL" != x0 ; then
395 tail make.tr_log
396 echo "makeclean: \"make Clean\" failed"
397 cp make.tr_log genmake.log genmake.tr_log $CDIR
398 return 1
399 fi
400 echo successful
401 else
402 echo ''
403 fi
404 exit 0
405 )
406 fi
407 }
408
409 run_clean()
410 {
411 # run_clean directory
412 if test "x$NOCLEAN" = xt ; then
413 echo "run_clean skipped!"
414 else
415 (
416 cd $1;
417 printf 'clean run-dir ... '
418 # part of what is done after "make clean" when doing "make CLEAN"
419 find . -name "*.meta" -exec rm {} \;
420 find . -name "*.data" -exec rm {} \;
421 find . -name "fort.*" -exec rm {} \;
422 find . -type l -exec rm {} \;
423 rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime
424 rm -rf mnc_test_*
425 rm -f *_MIT_CE_000.opt0000 costfunction*0000
426 echo successful
427 exit 0
428 )
429 fi
430 }
431
432 makedependmodel()
433 {
434 # makedependmodel directory
435 if test "x$NODEPEND" = xt ; then
436 echo "make depend skipped!"
437 else
438 (
439 cd $1;
440 printf 'make depend ... '
441 $MAKE depend >> make.tr_log 2>&1
442 RETVAL=$?
443 if test "x$RETVAL" != x0 ; then
444 tail make.tr_log
445 echo "makedependmodel: make depend failed"
446 cp make.tr_log genmake.log genmake.tr_log $CDIR
447 return 1
448 else
449 echo successful
450 fi
451 )
452 fi
453 }
454
455 makemodel()
456 {
457 # makemodel directory
458 (
459 if test "x$NOMAKE" = xt ; then
460 cd $1;
461 if test -x $EXECUTABLE ; then
462 echo "make skipped!"
463 else
464 echo "no executable!"
465 return 2
466 fi
467 else
468 cd $1;
469 if test -r Makefile ; then
470 printf 'make ... '
471 if test "x$ADM" = xt ; then
472 $MAKE adall >> make.tr_log 2>&1
473 elif test "x$OADM" = xt ; then
474 $MAKE adAll >> make.tr_log 2>&1
475 else
476 if test "x$JOBS" = x ; then
477 $MAKE >> make.tr_log 2>&1
478 else
479 $MAKE -j $JOBS >> make.tr_log 2>&1
480 fi
481 fi
482 RETVAL=$?
483 if test "x$RETVAL" != x0 ; then
484 tail make.tr_log
485 echo failed
486 cp make.tr_log genmake.log genmake.tr_log $CDIR
487 rm -f $EXECUTABLE
488 return 1
489 else
490 echo successful
491 fi
492 fi
493 fi
494 )
495 }
496
497 symlink_mpifiles()
498 {
499 # Put special links so that MPI specific files are used
500 # This MUST be invoked between makeclean and makelinks because
501 # the Makefile will link to non-mpi files by default
502
503 dir=$1
504 code_dir=$2
505 BUILD_DIR=$dir/$3
506 CODE_DIR=$dir/$code_dir
507
508 # These are files that should replace their counter-part when using -mpi
509 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
510
511 # Is this an MPI run?
512 if test "x$MPI" = xt ; then
513 # YES: We symbolically link these files to the build
514 # dir so long as there is no real file in place
515 for ii in $MPI_FILES ; do
516 i=`echo $ii | sed 's:^\./::'`
517 name=`echo $i | sed 's:_mpi::' `
518 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
519 RETVAL=$?
520 if test "x$RETVAL" != x0 ; then
521 if ! test -f $BUILD_DIR/$i ; then
522 #echo Linking $name to $i
523 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
524 fi
525 fi
526 done
527 else
528 # NO: We undo any _mpi symbolically linked files
529 for ii in $MPI_FILES ; do
530 i=`echo $ii | sed 's:^\./::'`
531 name=`echo $i | sed 's:_mpi::' `
532 if test -L $BUILD_DIR/$name ; then
533 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
534 RETVAL=$?
535 if test "x$RETVAL" = x0 ; then
536 #echo Un-linking $name from $linktarg
537 rm -f $BUILD_DIR/$name
538 fi
539 fi
540 done
541 fi
542
543 }
544
545 linkdata()
546 {
547 # linkdata run_dir input_dir_1 input_dir_2 ...
548 #
549 # symbolically link data files to run directory
550 if test -d $1 ; then
551 (
552 cd $1 ; shift
553 echo 'linkdata from dirs:' $*
554 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
555 for xx in $inpMPI ; do
556 if test -r "../"$1"/"$xx ; then
557 # found 1 _mpi sfx file in 1rst input dir and it is readable
558 yy=`echo $xx | sed 's:\.mpi$::'`
559 if test "x$MPI" = "xt" ; then
560 # mpi test: remove symbolic link & link _mpi sfx file
561 if test -h $yy ; then rm -f $yy ; fi
562 if test ! -r $yy ; then
563 ln -sf "../"$1"/"$xx $yy ;
564 printf " $xx" 1>&2
565 fi
566 else
567 # not mpi test: remove symbolic link
568 if test -h $yy ; then rm -f $yy ; fi
569 fi
570 fi
571 done
572 if test -r "../"$1"/eedata.mth" ; then
573 # found eedata.mth in 1rst input dir and it is readable
574 if test "x$MULTI_THREAD" = "xt" ; then
575 # multi-threaded test: remove symbolic link & link eedata.mth
576 if test -h eedata ; then rm -f eedata ; fi
577 if test ! -r eedata ; then
578 ln -sf "../"$1"/eedata.mth" eedata ;
579 printf ' eedata.mth' 1>&2
580 fi
581 else
582 # not multi-threaded test: remove eedata symbolic link
583 if test -h eedata ; then rm -f eedata ; fi
584 fi
585 fi
586 prevDir='NONE'
587 for ldir in $* ; do
588 if test -d "../"$ldir -a $ldir != $prevDir ; then
589 printf " ldir=${ldir}:" 1>&2
590 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
591 for i in $files ; do
592 if test ! -d "../"$ldir/$i ; then
593 if test ! -r $i ; then
594 printf ' '$i 1>&2
595 ln -sf "../"$ldir"/"$i $i
596 fi
597 fi
598 done
599 printf ' ;' 1>&2
600 if test -x "../"$ldir"/"prepare_run ; then
601 "../"$ldir"/"prepare_run 1>&2
602 else
603 echo '' 1>&2
604 fi
605 fi
606 prevDir=$ldir
607 done
608 )
609 fi
610 }
611
612 runmodel()
613 {
614 # runmodel directory
615 #
616 # runs "$COMMAND in "directory"
617 # (where "$COMMAND" is relative to "directory")
618 (
619 cd $1
620 printf 'runmodel in %s ... ' $1
621 if test -L $EXECUTABLE ; then
622 if test -x "../"$builddir"/"$EXECUTABLE ; then
623 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
624 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
625 else rm -f $EXECUTABLE
626 fi
627 fi
628 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
629 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
630 ln -sf "../"$builddir"/"$EXECUTABLE .
631 fi
632 if test ! -x $EXECUTABLE ; then
633 rm -f $RUNLOG ; touch $RUNLOG
634 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
635 echo " no executable:" $EXECUTABLE >> $RUNLOG
636 RETVAL=8
637 ENDVAL=-1
638 else
639 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
640 # output do not exist or is older than executable:
641 rm -f $RUNLOG ; touch $RUNLOG
642 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
643 ( eval $COMMAND ) >> $RUNLOG 2>&1
644 RETVAL=$?
645 else
646 RETVAL=0
647 if test -f $RUNLOG ; then
648 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
649 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
650 else
651 touch $RUNLOG
652 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
653 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
654 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
655 fi
656 fi
657 #ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
658 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
659 fi
660 rm -f run.log_tmp
661 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
662 echo successful
663 printf '=> output from running in %s :\n' $1 1>&2
664 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
665 # === Reduce the size of the testing emails!
666 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
667 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
668 return 0
669 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
670 #-- for some weird cases (run is finihed but with error code)
671 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
672 printf '=> output from running in %s :\n' $1 1>&2
673 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
674 return 0
675 else
676 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
677 printf '=> output from running in %s :\n' $1 1>&2
678 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
679 cp $RUNLOG $CDIR"/"$RUNLOG
680 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
681 return 1
682 fi
683 )
684 }
685
686 createcodelet()
687 {
688 # create codelet for comparing model output
689
690 printf "creating the comparison code (using CC=$CC)... "
691 cat > tr_cmpnum.c <<EOF
692 #include <stdio.h>
693 #include <math.h>
694 int main( int argc, char** argv ) {
695 int linnum,cmplin,best,lncnt;
696 double a,b,abave,relerr;
697 best = -22;
698 lncnt = 0;
699 while( 1 & ( (lncnt+=1) < 999 ) ) {
700 scanf("%d", &linnum);
701 if (linnum == -1) break;
702 scanf("%lf", &a); scanf("%lf", &b);
703 abave = 0.5*(fabs(a)+fabs(b));
704 if ( abave == abave ) {
705 if (abave > 0.0) {
706 relerr=fabs(a-b)/abave;
707 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
708 else { cmplin = -16 ; }
709 best = (best > cmplin) ? best : cmplin; }
710 else { cmplin = -22 ; }
711 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
712 }
713 else {
714 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
715 break; }
716 }
717 if (lncnt == 999) best=-29;
718 if (linnum != -1) best=-99;
719 printf("%d\n", -best);
720 return 0;
721 }
722 EOF
723 $CC -o tr_cmpnum tr_cmpnum.c -lm
724
725 if [ -x ./tr_cmpnum ]; then
726 echo "OK"
727 return 0
728 else
729 echo
730 echo "ERROR: failed to compile comparison code -- please specify"
731 echo " a C compiler using the CC environment variable."
732 exit 1
733 fi
734 }
735
736 formatresults()
737 {
738 # formatresults expt genmake depend make run results*
739
740 nm=$1
741 printf '%s %s %s %s' $2 $3 $4 $5
742 shift; shift; shift; shift; shift;
743 listPrt=$@
744 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
745 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
746 printf '%3s' $listPrt
747 # line below does not work on hp-ux_ia64 : do those substitutions later on
748 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
749
750 if [ $xx = '..' ]; then
751 printf ' N/O '
752 elif [ $xx = '--' ]; then
753 printf ' N/O '
754 elif [ $xx = 99 ]; then
755 printf ' N/O '
756 else
757 if [ $xx -ge $MATCH_CRIT ]; then
758 printf ' pass'
759 else
760 printf ' FAIL'
761 fi
762 fi
763 printf ' %s' $nm
764 printf '\n'
765
766 }
767
768 scandirs()
769 {
770 if [ $# -eq 1 ]; then
771 for arg in * ; do
772 test -f $arg/$1 && echo $arg
773 done
774 else
775 echo $*
776 fi
777 }
778
779
780 check_eedata()
781 {
782 # check_eedata size.h eedata
783 if [ $# -eq 2 ] ; then
784 if test -f $1 -a -f $2 ; then
785 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
786 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
787 if test "x$nx" = x ; then
788 rx=10
789 else
790 rx=`expr $sx % $nx`
791 fi
792 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
793 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
794 if test "x$ny" = x ; then
795 ry=20
796 else
797 ry=`expr $sy % $ny`
798 fi
799 echo `expr $rx + $ry`
800 else
801 echo '-1'
802 fi
803 else
804 echo '-2'
805 fi
806
807 }
808
809 ###############################################################################
810
811
812 # Default properties
813 debug=0
814 verbose=1
815 clean=0
816
817 IEEE=true
818 if test "x$MITGCM_IEEE" != x ; then
819 IEEE=$MITGCM_IEEE
820 fi
821 GSL=f
822
823 CLEANUP=f
824 NORUN=f
825 QUICK=f
826 NOMAKE=f
827 NOGENMAKE=f
828 NOCLEAN=f
829 NODEPEND=f
830 POSTCLEAN=f
831
832 BASH=
833 OPTFILE=NONE
834 ADDRESSES=
835 TESTDIRS=
836 SKIPDIRS=
837 MPACKDIR="../tools/mpack-1.6"
838 HAVE_MPACK=
839 MPACK=
840 COMMAND=
841 MKDEPEND=
842 if test "x$MAKE" = x ; then
843 MAKE=make
844 fi
845 if test "x$CC" = x ; then
846 CC=cc
847 fi
848 JOBS=
849 MPI=f
850 MULTI_THREAD=f
851 OUTDIR=
852 DELDIR=
853 USE_R4=
854
855 ADM=
856 OADM=
857
858 # list of pTracers to check for monitor output
859 PTRACERS_NUM="1 2 3 4 5"
860
861 MATCH_CRIT=10
862
863 printf "parsing options... "
864
865 ac_prev=
866 for ac_option ; do
867
868 # If the previous option needs an argument, assign it.
869 if test -n "$ac_prev"; then
870 eval "$ac_prev=\$ac_option"
871 ac_prev=
872 continue
873 fi
874
875 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
876
877 case $ac_option in
878
879 -help | --help | -h | --h)
880 usage ;;
881
882 -optfile | --optfile | -of | --of)
883 ac_prev=OPTFILE ;;
884 -optfile=* | --optfile=* | -of=* | --of=*)
885 OPTFILE=$ac_optarg ;;
886
887 -addr | --addr | -a | --a)
888 ac_prev=ADDRESSES ;;
889 -addr=* | --addr=* | -a=* | --a=*)
890 ADDRESSES=$ac_optarg ;;
891 -mpackdir | --mpackdir | -mpd | --mpd)
892 ac_prev=MPACKDIR ;;
893 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
894 MPACKDIR=$ac_optarg ;;
895
896 -tdir | --tdir | -t | --t)
897 ac_prev=TESTDIRS ;;
898 -tdir=* | --tdir=* | -t=* | --t=*)
899 TESTDIRS=$ac_optarg ;;
900
901 -skipdir | --skipdir | -skd | --skd)
902 ac_prev=SKIPDIRS ;;
903 -skipdir=* | --skipdir=* | -skd=* | --skd=*)
904 SKIPDIRS=$ac_optarg ;;
905
906 -bash | --bash | -b | --b)
907 ac_prev=BASH ;;
908 -bash=* | --bash=* | -b=* | --b=*)
909 BASH=$ac_optarg ;;
910
911 -command | --command | -c | --c)
912 ac_prev=COMMAND ;;
913 -command=* | --command=* | -c=* | --c=*)
914 COMMAND=$ac_optarg ;;
915
916 -makedepend | --makedepend | -md | --md)
917 ac_prev=MKDEPEND ;;
918 -makedepend=* | --makedepend=* | -md=* | --md=*)
919 MKDEPEND=$ac_optarg ;;
920
921 -make | --make | -m | --m)
922 ac_prev=MAKE ;;
923 -make=* | --make=* | -m=* | --m=*)
924 MAKE=$ac_optarg ;;
925
926 -odir | --odir)
927 ac_prev=OUTDIR ;;
928 -odir=* | --odir=*)
929 OUTDIR=$ac_optarg ;;
930
931 -ptracers | --ptracers | -ptr | --ptr)
932 ac_prev=PTRACERS_NUM ;;
933 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
934 PTRACERS_NUM=$ac_optarg ;;
935
936 -match | --match ) ac_prev=MATCH_CRIT ;;
937 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
938
939 -j | --j) ac_prev=JOBS ;;
940 -j=* | --j=*) JOBS=$ac_optarg ;;
941
942 -clean | --clean)
943 CLEANUP=t ; DELDIR=t ;;
944
945 -norun | --norun | -nr | --nr)
946 NORUN=t ;;
947 -runonly | --runonly | -ro | --ro)
948 QUICK=t ; NOMAKE=t ;;
949 -quick | --quick | -q | --q)
950 QUICK=t ;;
951 -nogenmake | --nogenmake | -ng | --ng)
952 NOGENMAKE=t ;;
953 -noclean | --noclean | -nc | --nc)
954 NOCLEAN=t ;;
955 -nodepend | --nodepend | -nd | --nd)
956 NODEPEND=t ;;
957
958 -postclean | --postclean | -pc | --pc)
959 POSTCLEAN=t ;;
960
961 -mpi) MPI=t ;;
962
963 -mth) MULTI_THREAD=t ;;
964
965 -adm | -ad) ADM=t ;;
966
967 -oad) OADM=t; NODEPEND=t ;;
968
969 -ieee) IEEE=true ;;
970 -noieee) IEEE= ;;
971 -gsl) GSL=t ;;
972
973 -verbose) verbose=2 ;;
974 -debug) debug=1 ;;
975 -quiet) verbose=0 ;;
976
977 -deldir | -dd) DELDIR=t ;;
978
979 -use_r4|-ur4) USE_R4=t ;;
980
981 -ts) TS=t;;
982 -papis) PAPIS=t;;
983 -pcls) PCL=t;;
984
985 -*)
986 echo "Error: unrecognized option: "$ac_option
987 usage
988 ;;
989
990 *)
991 echo "Error: unrecognized argument: "$ac_option
992 usage
993 ;;
994
995 esac
996
997 done
998
999 if test "x$QUICK" = xt ; then
1000 NOGENMAKE=t
1001 NOCLEAN=t
1002 NODEPEND=t
1003 fi
1004
1005 #- setting for forward or ADM testing
1006 if test "x$ADM" = xt ; then
1007 code_dir=code_ad
1008 inputdir=input_ad
1009 ref_outp="output_adm.txt"
1010 EXECUTABLE="mitgcmuv_ad"
1011 elif test "x$OADM" = xt ; then
1012 code_dir=code_oad
1013 inputdir=input_oad
1014 ref_outp="output_oadm.txt"
1015 EXECUTABLE="mitgcmuv_ad"
1016 else
1017 code_dir=code
1018 inputdir=input
1019 ref_outp="output.txt"
1020 EXECUTABLE="mitgcmuv"
1021 fi
1022
1023 xx=`echo $TESTDIRS | awk '{print $1}'`
1024 if test "x$TESTDIRS" = x ; then
1025 LIST=`scandirs results/$ref_outp`
1026 elif test $xx = 'start_from' ; then
1027 xx=`echo $TESTDIRS | awk '{print $2}'`
1028 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1029 else
1030 #- expand group of experiments:
1031 LIST=" "
1032 for xx in $TESTDIRS
1033 do
1034 case $xx in
1035 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1036 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1037 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1038 ;;
1039 'tutorials')
1040 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1041 *) LIST=${LIST}" "$xx ;;
1042 esac
1043 done
1044 fi
1045 #echo 'LIST='${LIST}'<'
1046 #- skip dirs, remove duplicate and non-directory:
1047 TESTDIRS=" "
1048 count=0
1049 for xx in $LIST
1050 do
1051 yy=`echo $SKIPDIRS | grep -c $xx`
1052 if test $yy = 0 ; then
1053 if test -d $xx ; then
1054 yy=`echo $TESTDIRS | grep -c $xx`
1055 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1056 else count=1 ;
1057 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1058 fi
1059 else
1060 if test $count = 1 ; then echo -n ", \"$xx\""
1061 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1062 fi
1063 fi
1064 done
1065 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1066 #echo 'TESTDIRS='${TESTDIRS}'<'
1067
1068 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1069 OPTFILE=$MITGCM_OF
1070 fi
1071
1072 RUNLOG="run.tr_log"
1073 OUTPUTFILE=$ref_outp
1074 if test "x$COMMAND" = x ; then
1075 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1076 fi
1077 if test "x$MPI" = xt ; then
1078 OUTPUTFILE="STDOUT.0000"
1079 fi
1080
1081 echo "OK (COMMAND= $COMMAND )"
1082
1083 # set the Default List of output variables to be checked:
1084 # (use default or load experiment-specific list from file "tr_checklist")
1085 # content : 1rst = main variable used to decide if it pass or FAIL
1086 # others = number of matching digits to be printed in summary.txt
1087 if test "x$ADM" = x -a "x$OADM" = x; then
1088 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1089 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1090 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1091 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1092 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1093 else
1094 DEF_CHECK_LIST='Grad Cost Grad'
1095 EMPTY_RESULTS='.. ..'
1096 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1097 fi
1098
1099 # create the FORTRAN comparison code
1100 if test -x tr_cmpnum ; then
1101 echo "skipping comparison code build"
1102 else
1103 createcodelet
1104 fi
1105
1106 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1107 if test "x$ADDRESSES" = x ; then
1108 echo "skipping mpack build"
1109 else
1110 build_mpack
1111 fi
1112
1113 # Create a uniquely named directory to store results
1114 CMDLINE=$0
1115 for xx in "$@" ; do nw=`echo $xx | wc -w`
1116 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1117 else CMDLINE="$CMDLINE '$xx'" ; fi
1118 done
1119 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1120 MACH=`hostname`
1121 UNAMEA=`uname -a`
1122 DATE=`date +%Y%m%d`
1123 BASE="tr_"$MACH"_"$DATE"_"
1124 if test "x$OUTDIR" != x ; then
1125 BASE="tr_"$OUTDIR"_"$DATE"_"
1126 else
1127 short_name=`hostname | sed 's/\..*$//'`
1128 BASE="tr_"$short_name"_"$DATE"_"
1129 fi
1130 DNUM=0
1131 DRESULTS="$BASE$DNUM"
1132 while test -e $DRESULTS ; do
1133 DNUM=$(( $DNUM + 1 ))
1134 DRESULTS="$BASE$DNUM"
1135 done
1136 mkdir $DRESULTS
1137 RETVAL=$?
1138 if test "x$RETVAL" != x0 ; then
1139 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1140 exit 1
1141 fi
1142 SUMMARY="$DRESULTS/summary.txt"
1143 start_date=`date`
1144 echo $start_date > $SUMMARY
1145 echo 'run:' $CMDLINE >> $SUMMARY
1146 echo 'on :' $UNAMEA >> $SUMMARY
1147
1148 of_path=
1149 if test "x$OPTFILE" != xNONE ; then
1150 if test -r $OPTFILE ; then
1151 # get the path
1152 path=${OPTFILE%/*}
1153 if test "x$path" = x ; then
1154 of_path=`pwd`
1155 else
1156 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1157 fi
1158 file=${OPTFILE##*/}
1159 OPTFILE=$of_path/$file
1160 cp $OPTFILE $DRESULTS
1161 echo >> $SUMMARY
1162 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1163 else
1164 echo | tee $SUMMARY
1165 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1166 exit 1
1167 fi
1168 else
1169 echo >> $SUMMARY
1170 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1171 #-note: to be filled later after 1rst run
1172 fi
1173 echo
1174 echo >> $SUMMARY
1175 if test "x$ADM" = x -a "x$OADM" = x; then
1176 if [ $MATCH_CRIT -lt 10 ] ;
1177 then line_0="default "$MATCH_CRIT ;
1178 else line_0="default "$MATCH_CRIT ; fi
1179 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1180 line_1="G D M c m s m s m s m s"
1181 line_2="E p a R g m m e . m m e . m m e . m m e ."
1182 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1183 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1184 for ii in $PTRACERS_NUM ; do
1185 line_0="$line_0 --PTR 0"$ii"--"
1186 line_1="$line_1 m s"
1187 line_2="$line_2 m m e ."
1188 line_3="$line_3 i a a d"
1189 line_4="$line_4 n x n ."
1190 done
1191 echo "$line_0" | tee -a $SUMMARY
1192 echo "$line_1" | tee -a $SUMMARY
1193 echo "$line_2" | tee -a $SUMMARY
1194 echo "$line_3" | tee -a $SUMMARY
1195 echo "$line_4" | tee -a $SUMMARY
1196 echo " " | tee -a $SUMMARY
1197 else
1198 echo "ADJOINT=true" >> $SUMMARY
1199 echo >> $SUMMARY
1200 if [ $MATCH_CRIT -lt 10 ] ;
1201 then line_0="default "$MATCH_CRIT ;
1202 else line_0="default "$MATCH_CRIT ; fi
1203 echo "$line_0" | tee -a $SUMMARY
1204 cat << EOF | tee -a $SUMMARY
1205 G D M C G
1206 E p a R o r
1207 N n k u s a
1208 2 d e n t d
1209
1210 EOF
1211 fi
1212 echo "-------------------------------------------------------------------------------"
1213
1214 # ...and each test directory...
1215 for dir in $TESTDIRS ; do
1216
1217 # set builddir & rundir:
1218 builddir="build"
1219 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1220 rundir="run"
1221 pfxdir="tr_$rundir"
1222 if test ! -d $dir/$rundir ; then
1223 rundir=$builddir
1224 fi
1225 CODE_DIR=$dir/$code_dir
1226 BUILD_DIR=$dir/$builddir
1227
1228 # Cleanup only!
1229 if test "x$CLEANUP" = xt ; then
1230 echo -n ' --- dir:' $BUILD_DIR ': '
1231 makeclean $BUILD_DIR
1232 ( cd $BUILD_DIR
1233 rm -f $EXECUTABLE *.bak
1234 rm -f genmake_state genmake_*optfile genmake.log
1235 rm -f genmake.tr_log make.tr_log
1236 )
1237 if test -d $dir/$rundir/CVS ; then
1238 echo -n ' --- dir:' $dir/$rundir ': '
1239 run_clean $dir/$rundir
1240 fi
1241 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1242 ttd=`echo $trdir | wc -w`
1243 if test $ttd != 0 ; then
1244 echo ' --- rm dir:' $trdir
1245 ( cd $dir ; rm -rf $trdir )
1246 fi
1247 continue
1248 fi
1249
1250 # Verify that the testdir exists and contains previous
1251 # results in the correct location--or skip this directory!
1252 fout=$dir"/results/"$ref_outp
1253 if test ! -r $fout ; then
1254 echo "can't read \"$fout\" -- skipping $dir"
1255 continue
1256 fi
1257
1258 # Check for specific files for particular type of run
1259
1260 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1261 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1262 continue
1263 fi
1264 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1265 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1266 continue
1267 fi
1268 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1269 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1270 if test $retv != 0 ; then
1271 echo "input/eedata.mth tiling misfit -- skipping $dir"
1272 continue
1273 fi
1274 fi
1275
1276 # Check whether there are "extra runs" for this testdir
1277 extra_runs=
1278 if test "x$NORUN" = xf ; then
1279 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1280 fi
1281 #echo "ex_run_dirs='$ex_run_dirs'"
1282 for exd in $ex_run_dirs ; do
1283 name=`echo $exd | sed -e "s/$inputdir\.//"`
1284 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1285 outf="$dir/results/$refExOut"
1286 if test -f $outf -a -r $outf ; then
1287 if test "x$MULTI_THREAD" = "xt" ; then
1288 if test -r $dir"/"$exd"/eedata.mth" ; then
1289 if test "x$MPI" = "xt" ; then
1290 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1291 if test $retv = 0 ; then
1292 extra_runs="$extra_runs $name"
1293 else
1294 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1295 fi
1296 else
1297 extra_runs="$extra_runs $name"
1298 fi
1299 #else echo $dir"/"$exd"/eedata.mth: not found"
1300 fi
1301 else
1302 extra_runs="$extra_runs $name"
1303 fi
1304 fi
1305 done
1306
1307 echo
1308 if test "x$extra_runs" = "x" ; then
1309 echo "Experiment: $dir"
1310 else
1311 echo "Experiment: $dir ; extra_runs=$extra_runs"
1312 fi
1313 echo
1314 unset genmake makedepend make run
1315 results=$EMPTY_RESULTS
1316
1317 # Create an output dir for each OPTFILE/tdir combination
1318 locDIR=$DRESULTS"/"$dir
1319 mkdir $locDIR
1320 CDIR=`pwd`"/$locDIR"
1321
1322 if test "x$NORUN" = xt ; then
1323 run=N
1324 genmakemodel $dir/$builddir && genmake=Y \
1325 && makeclean $dir/$builddir \
1326 && symlink_mpifiles $dir $code_dir $builddir \
1327 && makedependmodel $dir/$builddir && makedepend=Y \
1328 && makemodel $dir/$builddir && make=Y
1329 else
1330 genmakemodel $dir/$builddir && genmake=Y \
1331 && makeclean $dir/$builddir \
1332 && symlink_mpifiles $dir $code_dir $builddir \
1333 && makedependmodel $dir/$builddir && makedepend=Y \
1334 && makemodel $dir/$builddir && make=Y \
1335 && run_clean $dir/$rundir \
1336 && linkdata $dir/$rundir $inputdir \
1337 && runmodel $dir/$rundir && run=Y \
1338 && results=`testoutput_run $dir $rundir $ref_outp`
1339 fi
1340 #echo "results='$results'"
1341
1342 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1343 echo 1>&2
1344 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1345 touch $locDIR"/summary.txt"
1346 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1347 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1348 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1349 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1350 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1351 if test "x$ADM" = xt ; then
1352 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1353 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1354 >> $locDIR"/summary.txt"
1355 fi
1356
1357 for ex in $extra_runs ; do
1358 unset run
1359 results=$EMPTY_RESULTS
1360 # reference output file
1361 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1362 # Create an output dir for each OPTFILE/tdir.ex combination
1363 locDIR=$DRESULTS"/"$dir"."$ex
1364 mkdir $locDIR
1365 CDIR=`pwd`"/$locDIR"
1366 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1367 run_clean $dir/$pfxdir.$ex
1368 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1369 runmodel $dir/$pfxdir.$ex && run=Y \
1370 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1371 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1372 fres="$fres.$ex"
1373 echo 1>&2
1374 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1375 touch $locDIR"/summary.txt"
1376 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1377 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1378 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1379 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1380 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1381 if test "x$ADM" = xt ; then
1382 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1383 grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \
1384 >> $locDIR"/summary.txt"
1385 fi
1386 if test "x$POSTCLEAN" = xt ; then
1387 run_clean $dir/$pfxdir.$ex
1388 fi
1389 done
1390
1391 if test -f $DRESULTS"/"genmake_state ; then : ; else
1392 if test -f $dir/$builddir/Makefile ; then
1393 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1394 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1395 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1396 echo " $mkOpt" >> $DRESULTS/genmake_state
1397 if test "x$OPTFILE" = xNONE ; then
1398 eval $mkOpt
1399 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1400 $SUMMARY > tr_0.tmp_log
1401 RETVAL=$?
1402 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1403 cp tr_0.tmp_log $SUMMARY
1404 else rm -f tr_0.tmp_log
1405 fi
1406 fi
1407 gmkLog=$dir/$builddir/genmake.log
1408 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1409 RETVAL=$?
1410 if test "x$RETVAL" = x0 ; then
1411 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1412 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1413 | grep -v '^... compiler version ' > tr_1.tmp_log
1414 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1415 >> $DRESULTS/genmake_state
1416 rm -f tr_1.tmp_log
1417 fi
1418 fi
1419 fi
1420 #postclean $dir/$builddir
1421 if test "x$POSTCLEAN" = xt ; then
1422 makeclean $dir/$builddir \
1423 && run_clean $dir/$rundir
1424 fi
1425
1426 echo "-------------------------------------------------------------------------------"
1427
1428 done
1429
1430 printf "Start time: " >> $SUMMARY
1431 echo "$start_date" >> $SUMMARY
1432 printf "End time: " >> $SUMMARY
1433 date >> $SUMMARY
1434
1435 # If addresses were supplied and mpack built successfully, then try
1436 # to send email using mpack.
1437 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1438 echo "No results email was sent."
1439 else
1440 if test "x$HAVE_MPACK" = xt ; then
1441 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1442 && gzip $DRESULTS".tar" \
1443 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1444 RETVAL=$?
1445 if test "x$RETVAL" != x0 ; then
1446 echo
1447 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1448 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1449 echo " summary of results from the directory \"$DRESULTS\"."
1450 echo
1451 else
1452 echo
1453 echo "An email containing results was sent to the following addresses:"
1454 echo " \"$ADDRESSES\""
1455 echo
1456 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1457 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1458 fi
1459 fi
1460 fi
1461
1462 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1463 rm -f tr_cmpnum.c tr_cmpnum
1464 fi
1465
1466 if test "x$CLEANUP" != xt ; then
1467 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1468 if test -e tr_out.txt ; then
1469 mv tr_out.txt tr_out.txt.old
1470 fi
1471 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1472 fi
1473
1474 if test "x$DELDIR" = xt ; then
1475 rm -rf $DRESULTS
1476 fi

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