/[MITgcm]/MITgcm/verification/testreport
ViewVC logotype

Contents of /MITgcm/verification/testreport

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph


Revision 1.152 - (show annotations) (download)
Fri Dec 17 17:32:24 2010 UTC (13 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint62q
Changes since 1.151: +16 -6 lines
if no optfile specified, put the name of the optfile that genmake2 uses
 in the testreport summary.

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.151 2010/12/15 17:46:30 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
20 echo " (-optfile|-of) STRING list of optfiles to use"
21 echo " (-addr|-a) STRING list of email recipients"
22 echo " (DEF=\"\" no email is sent)"
23 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
24 echo " (DEF=\"../tools/mpack-1.6\")"
25 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
26 echo " (recognized groups: basic, tutorials)"
27 echo " (DEF=\"\" which test all)"
28 echo " (if list= 'start_from THIS_EXP' then"
29 echo " test THIS_EXP + all the following)"
30 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
31 echo " (DEF=\"\" which test all)"
32 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
33 echo " Bourne-compatible \"sh\" shell"
34 echo " (DEF=\"\" for \"bash\")"
35 echo " (-adm|-ad) perform an adjoint run"
36 echo " (-oad) perform an OpenAD adjoint run"
37 echo " (-command|-c) STRING command to run"
38 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
39 echo " (-make|-m) STRING command to use for \"make\""
40 echo " (DEF=\"make\")"
41 echo " (-odir) STRING used to build output directory name"
42 echo " (DEF=\"hostname\")"
43 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
44 echo " (DEF=\"1 2 3 4 5\")"
45 echo " (-match) NUMBER Matching Criteria (number of digits)"
46 echo " (DEF=\"$MATCH_CRIT\")"
47 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
48 echo " (-clean) *ONLY* run \"make CLEAN\""
49 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
50 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
51 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
52 echo " (-nogenmake|-ng) skip the genmake stage"
53 echo " (-noclean|-nc) skip the \"make clean\" stage"
54 echo " (-nodepend|-nd) skip the \"make depend\" stage"
55 echo " (-deldir|-dd) on success, delete the output directory"
56 echo " (-ts) provide timing information per timestep"
57 echo " (-papis) provide MFlop/s per timestep using PAPI"
58 echo " (-pcls) provide MFlop/s per timestep using PCL"
59 echo
60 echo "and where STRING can be a whitespace-delimited list"
61 echo "such as:"
62 echo
63 echo " -t 'exp0 exp2 exp3' "
64 echo " -addr='abc@123.com testing@home.org'"
65 echo
66 echo "provided that the expression is properly quoted within the current"
67 echo "shell (note the use of single quotes to protect white space)."
68 echo
69 exit 1
70 }
71
72 # build the mpack utility
73 build_mpack()
74 {
75 printf "building the mpack utility... "
76 MPACK="$MPACKDIR/mpack"
77 if test ! -x $MPACK ; then
78 if test ! -d $MPACKDIR ; then
79 echo
80 echo "Error: can't find \"$MPACKDIR\""
81 echo " are you sure this program is being run in the correct "
82 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
83 echo
84 HAVE_MPACK=f
85 fi
86 if test "x$CC" = x ; then
87 export CC=cc
88 fi
89 printf "building mpack (using CC=$CC)... "
90 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
91 RETVAL=$?
92 if test "x$RETVAL" != x0 ; then
93 echo
94 echo "Error building the mpack tools at: $MPACK_DIR"
95 echo
96 HAVE_MPACK=f
97 else
98 rm -f tr_build_mpack.out
99 HAVE_MPACK=t
100 echo "done"
101 fi
102 else
103 HAVE_MPACK=t
104 echo "already exist"
105 fi
106 }
107
108 testoutput_var()
109 {
110 # testoutput_var dir s1 label subdir reference_output
111 #
112 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
113 # with same output from reference file $dir/results/$reference_output
114 # using search strings s1 and text label
115
116 if [ $debug -gt 0 ]; then
117 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
118 fi
119 if [ -r $1/$4/$OUTPUTFILE ]; then
120 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
121 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
122 if [ $lncntA -lt 2 ]; then
123 if [ $verbose -gt 0 ]; then
124 echo Not enough lines of output when searching for "$2" 1>&2
125 fi
126 return 99
127 fi
128 else
129 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
130 return 99
131 fi
132 if [ $debug -gt 0 ]; then
133 echo testoutput_var: grep "$2" $1/results/$5 1>&2
134 fi
135 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
136 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
137 if [ $lncntB -lt 2 ]; then
138 if [ $verbose -gt 0 ]; then
139 echo Not enough lines of output when searching for "$2" 1>&2
140 fi
141 return 99
142 fi
143 if [ $lncntA -ne $lncntB ]; then
144 if [ $verbose -gt 0 ]; then
145 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
146 fi
147 return 99
148 fi
149 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
150 if [ $has_nan -gt 0 ] ; then
151 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
152 return 99
153 fi
154 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
155 if [ $has_inf -gt 0 ] ; then
156 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
157 return 99
158 fi
159 if [ $debug -gt 0 ]; then
160 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
161 fi
162 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
163 if [ $debug -gt 0 ]; then
164 echo testoutput_var: compare_lines 1>&2
165 fi
166 if [ $verbose -gt 1 ]; then
167 cat tmp3.txt 1>&2
168 fi
169 echo "-1" >> tmp3.txt
170 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
171 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
172 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
173 if [ $digits_of_similarity -eq 99 ]; then
174 if [ $verbose -gt 0 ]; then
175 echo testoutput_var: No comparison was available for \"$3\" 1>&2
176 fi
177 digits_of_similarity=99
178 else
179 if [ $verbose -gt 0 ]; then
180 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
181 fi
182 fi
183 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
184
185 return $digits_of_similarity
186 }
187
188 testoutput_run()
189 {
190 # testoutput_run directory subdir reference_output
191 #
192 # test output from 1 run in "directory"
193 # --> same processing for adjoint & forward test
194 # default list of output variables to be checked:
195 # 1rst : main variable used to decide if it pass or FAIL
196 # others : number of matching digits to be printed in summary.txt
197 listChk=$DEF_CHECK_LIST
198 # load experiment-specific list from file "tr_checklist" (if it exist)
199 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
200 sVar=`echo $listChk | awk '{print $1}'`
201 # remove 1rst var and expand the list: + => min max mean s.d
202 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
203 | sed 's/+//g' | sed "s/^$sVar//"`
204 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
205 # check for ptracer output in reference_output file :
206 outpref=$1/results/$3
207 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
208 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
209 for ii in $PTRACERS_NUM ; do
210 ptrfound=0
211 for jj in $ptr_mon ; do
212 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
213 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
214 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
215 done
216 if test $ptrfound = '1' ; then
217 eval "HAVE_PTR0"$ii"=t"
218 else
219 eval "HAVE_PTR0"$ii"=f"
220 if test "x$ADM" = x -a "x$OADM" = x; then
221 # remove this ptr from the list of output variable to check
222 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
223 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
224 fi
225 fi
226 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
227 done
228 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
229 if test $tst != 1 ; then
230 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
231 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
232 echo "==> WARNING: in checked list:" $listVar 1>&2
233 #- put it back once:
234 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
235 fi
236 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
237 echo "listVar='$listVar'" > $locDIR"/summary.txt"
238 allargs=""
239 for xx in $listVar
240 do
241 case $xx in
242 'PS') if [ $debug -gt 0 ]
243 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
244 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
245 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
246 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
247 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
248 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
249 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
250 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
251 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
252 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
253 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
254 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
255 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
256 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
257 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
258 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
259 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
260 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
261 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
262 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
263 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
264 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
265 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
266 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
267 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
268 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
269 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
270 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
271 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
272 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
273 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
274 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
275 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
276 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
277 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
278 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
279 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
280 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
281 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
282 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
283 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
284 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
285 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
286 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
287 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
288 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
289 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
290 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
291 esac
292 if test $xx = $sVar
293 then allargs="$allargs > $yy <"
294 else allargs="$allargs $yy"
295 fi
296 done
297
298 nbVar=`echo $listVar | awk '{print NF}'`
299 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
300 #-- fill line (up to standard length) with dot:
301 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
302 echo $allargs $adNul
303 else
304 echo $allargs
305 fi
306 # <-- same processing for adjoint & forward test
307 }
308
309 genmakemodel()
310 {
311 # genmakemodel directory
312 if test "x$NOGENMAKE" = xt ; then
313 echo "genmake skipped!"
314 else
315 if test "x$BASH" = x ; then
316 GENMAKE2="../../../tools/genmake2"
317 else
318 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
319 fi
320 (
321 cd $1;
322 command="$GENMAKE2 -ds -m $MAKE"
323 if test "x$MKDEPEND" != x ; then
324 command="$command -makedepend=$MKDEPEND"
325 fi
326 if test "x$ADM" = xt ; then
327 command="$command --mods=../code_ad"
328 elif test "x$OADM" = xt ; then
329 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
330 else
331 command="$command -mods=../code"
332 fi
333 if test "x$OPTFILE" != xNONE ; then
334 command="$command -optfile=$OPTFILE"
335 fi
336 if test "x$IEEE" != x ; then
337 command="$command -ieee"
338 fi
339 if test "x$GSL" = xt ; then
340 command="$command -gsl"
341 fi
342 if test "x$MPI" = xt ; then
343 command="$command -mpi"
344 fi
345 if test "x$MULTI_THREAD" = xt ; then
346 #- run multi-threaded using OpenMP:
347 command="$command -omp"
348 fi
349 if test "x$USE_R4" = xt ; then
350 command="$command -use_r4"
351 fi
352 if test "x$TS" = xt ; then
353 command="$command -ts"
354 fi
355 if test "x$PAPIS" = xt ; then
356 command="$command -papis"
357 else
358 if test "x$PCLS" = xt ; then
359 command="$command -pcls"
360 fi
361 fi
362 printf 'genmake ... '
363 eval $command > genmake.tr_log 2>&1
364 RETVAL=$?
365 # Reduce the size of the testing emails!
366 head -100 Makefile > $CDIR/Makefile_head
367 if test "x$RETVAL" != x0 ; then
368 tail genmake.tr_log
369 echo "genmakemodel: genmake failed"
370 cp genmake.log genmake_* genmake.tr_log $CDIR
371 return 1
372 else
373 echo "successful"
374 fi
375 )
376 fi
377 }
378
379 makeclean()
380 {
381 # makeclean directory
382 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
383 if test "x$NOCLEAN" = xt ; then
384 echo "make Clean skipped!"
385 else
386 (
387 cd $1;
388 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
389 if test -r Makefile ; then
390 printf 'clean build-dir: make Clean ... '
391 rm -f Makefile.old
392 $MAKE Clean >> make.tr_log 2>&1
393 RETVAL=$?
394 if test "x$RETVAL" != x0 ; then
395 tail make.tr_log
396 echo "makeclean: \"make Clean\" failed"
397 cp make.tr_log genmake.log genmake.tr_log $CDIR
398 return 1
399 fi
400 echo successful
401 else
402 echo ''
403 fi
404 exit 0
405 )
406 fi
407 }
408
409 run_clean()
410 {
411 # run_clean directory
412 if test "x$NOCLEAN" = xt ; then
413 echo "run_clean skipped!"
414 else
415 (
416 cd $1;
417 printf 'clean run-dir ... '
418 # part of what is done after "make clean" when doing "make CLEAN"
419 find . -name "*.meta" -exec rm {} \;
420 find . -name "*.data" -exec rm {} \;
421 find . -name "fort.*" -exec rm {} \;
422 find . -type l -exec rm {} \;
423 rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime
424 rm -rf mnc_test_*
425 rm -f *_MIT_CE_000.opt0000 costfunction*0000
426 echo successful
427 exit 0
428 )
429 fi
430 }
431
432 makedependmodel()
433 {
434 # makedependmodel directory
435 if test "x$NODEPEND" = xt ; then
436 echo "make depend skipped!"
437 else
438 (
439 cd $1;
440 printf 'make depend ... '
441 $MAKE depend >> make.tr_log 2>&1
442 RETVAL=$?
443 if test "x$RETVAL" != x0 ; then
444 tail make.tr_log
445 echo "makedependmodel: make depend failed"
446 cp make.tr_log genmake.log genmake.tr_log $CDIR
447 return 1
448 else
449 echo successful
450 fi
451 )
452 fi
453 }
454
455 makemodel()
456 {
457 # makemodel directory
458 (
459 if test "x$NOMAKE" = xt ; then
460 cd $1;
461 if test -x $EXECUTABLE ; then
462 echo "make skipped!"
463 else
464 echo "no executable!"
465 return 2
466 fi
467 else
468 cd $1;
469 if test -r Makefile ; then
470 printf 'make ... '
471 if test "x$ADM" = xt ; then
472 $MAKE adall >> make.tr_log 2>&1
473 elif test "x$OADM" = xt ; then
474 $MAKE adAll >> make.tr_log 2>&1
475 else
476 if test "x$JOBS" = x ; then
477 $MAKE >> make.tr_log 2>&1
478 else
479 $MAKE -j $JOBS >> make.tr_log 2>&1
480 fi
481 fi
482 RETVAL=$?
483 if test "x$RETVAL" != x0 ; then
484 tail make.tr_log
485 echo failed
486 cp make.tr_log genmake.log genmake.tr_log $CDIR
487 rm -f $EXECUTABLE
488 return 1
489 else
490 echo successful
491 fi
492 fi
493 fi
494 )
495 }
496
497 symlink_mpifiles()
498 {
499 # Put special links so that MPI specific files are used
500 # This MUST be invoked between makeclean and makelinks because
501 # the Makefile will link to non-mpi files by default
502
503 dir=$1
504 code_dir=$2
505 BUILD_DIR=$dir/$3
506 CODE_DIR=$dir/$code_dir
507
508 # These are files that should replace their counter-part when using -mpi
509 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
510
511 # Is this an MPI run?
512 if test "x$MPI" = xt ; then
513 # YES: We symbolically link these files to the build
514 # dir so long as there is no real file in place
515 for ii in $MPI_FILES ; do
516 i=`echo $ii | sed 's:^\./::'`
517 name=`echo $i | sed 's:_mpi::' `
518 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
519 RETVAL=$?
520 if test "x$RETVAL" != x0 ; then
521 if ! test -f $BUILD_DIR/$i ; then
522 #echo Linking $name to $i
523 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
524 fi
525 fi
526 done
527 else
528 # NO: We undo any _mpi symbolically linked files
529 for ii in $MPI_FILES ; do
530 i=`echo $ii | sed 's:^\./::'`
531 name=`echo $i | sed 's:_mpi::' `
532 if test -L $BUILD_DIR/$name ; then
533 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
534 RETVAL=$?
535 if test "x$RETVAL" = x0 ; then
536 #echo Un-linking $name from $linktarg
537 rm -f $BUILD_DIR/$name
538 fi
539 fi
540 done
541 fi
542
543 }
544
545 linkdata()
546 {
547 # linkdata run_dir input_dir_1 input_dir_2 ...
548 #
549 # symbolically link data files to run directory
550 if test -d $1 ; then
551 (
552 cd $1 ; shift
553 echo 'linkdata from dirs:' $*
554 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
555 for xx in $inpMPI ; do
556 if test -r "../"$1"/"$xx ; then
557 # found 1 _mpi sfx file in 1rst input dir and it is readable
558 yy=`echo $xx | sed 's:\.mpi$::'`
559 if test "x$MPI" = "xt" ; then
560 # mpi test: remove symbolic link & link _mpi sfx file
561 if test -h $yy ; then rm -f $yy ; fi
562 if test ! -r $yy ; then
563 ln -sf "../"$1"/"$xx $yy ;
564 printf " $xx" 1>&2
565 fi
566 else
567 # not mpi test: remove symbolic link
568 if test -h $yy ; then rm -f $yy ; fi
569 fi
570 fi
571 done
572 if test -r "../"$1"/eedata.mth" ; then
573 # found eedata.mth in 1rst input dir and it is readable
574 if test "x$MULTI_THREAD" = "xt" ; then
575 # multi-threaded test: remove symbolic link & link eedata.mth
576 if test -h eedata ; then rm -f eedata ; fi
577 if test ! -r eedata ; then
578 ln -sf "../"$1"/eedata.mth" eedata ;
579 printf ' eedata.mth' 1>&2
580 fi
581 else
582 # not multi-threaded test: remove eedata symbolic link
583 if test -h eedata ; then rm -f eedata ; fi
584 fi
585 fi
586 prevDir='NONE'
587 for ldir in $* ; do
588 if test -d "../"$ldir -a $ldir != $prevDir ; then
589 printf " ldir=${ldir}:" 1>&2
590 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
591 for i in $files ; do
592 if test ! -d "../"$ldir/$i ; then
593 if test ! -r $i ; then
594 printf ' '$i 1>&2
595 ln -sf "../"$ldir"/"$i $i
596 fi
597 fi
598 done
599 printf ' ;' 1>&2
600 if test -x "../"$ldir"/"prepare_run ; then
601 "../"$ldir"/"prepare_run 1>&2
602 else
603 echo '' 1>&2
604 fi
605 fi
606 prevDir=$ldir
607 done
608 )
609 fi
610 }
611
612 runmodel()
613 {
614 # runmodel directory
615 #
616 # runs "$COMMAND in "directory"
617 # (where "$COMMAND" is relative to "directory")
618 (
619 cd $1
620 printf 'runmodel in %s ... ' $1
621 if test -L $EXECUTABLE ; then
622 if test -x "../"$builddir"/"$EXECUTABLE ; then
623 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
624 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
625 else rm -f $EXECUTABLE
626 fi
627 fi
628 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
629 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
630 ln -sf "../"$builddir"/"$EXECUTABLE .
631 fi
632 if test ! -x $EXECUTABLE ; then
633 rm -f $RUNLOG ; touch $RUNLOG
634 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
635 echo " no executable:" $EXECUTABLE >> $RUNLOG
636 RETVAL=8
637 ENDVAL=-1
638 else
639 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
640 # output do not exist or is older than executable:
641 rm -f $RUNLOG ; touch $RUNLOG
642 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
643 ( eval $COMMAND ) >> $RUNLOG 2>&1
644 RETVAL=$?
645 else
646 RETVAL=0
647 if test -f $RUNLOG ; then
648 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
649 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
650 else
651 touch $RUNLOG
652 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
653 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
654 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
655 fi
656 fi
657 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
658 fi
659 rm -f run.log_tmp
660 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
661 echo successful
662 printf '=> output from running in %s :\n' $1 1>&2
663 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
664 # === Reduce the size of the testing emails!
665 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
666 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
667 return 0
668 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
669 #-- for some weird cases (run is finihed but with error code)
670 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
671 printf '=> output from running in %s :\n' $1 1>&2
672 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
673 return 0
674 else
675 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
676 printf '=> output from running in %s :\n' $1 1>&2
677 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
678 cp $RUNLOG $CDIR"/"$RUNLOG
679 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
680 return 1
681 fi
682 )
683 }
684
685 createcodelet()
686 {
687 # create codelet for comparing model output
688
689 printf "creating the comparison code (using CC=$CC)... "
690 cat > tr_cmpnum.c <<EOF
691 #include <stdio.h>
692 #include <math.h>
693 int main( int argc, char** argv ) {
694 int linnum,cmplin,best,lncnt;
695 double a,b,abave,relerr;
696 best = -22;
697 lncnt = 0;
698 while( 1 & ( (lncnt+=1) < 999 ) ) {
699 scanf("%d", &linnum);
700 if (linnum == -1) break;
701 scanf("%lf", &a); scanf("%lf", &b);
702 abave = 0.5*(fabs(a)+fabs(b));
703 if ( abave == abave ) {
704 if (abave > 0.0) {
705 relerr=fabs(a-b)/abave;
706 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
707 else { cmplin = -16 ; }
708 best = (best > cmplin) ? best : cmplin; }
709 else { cmplin = -22 ; }
710 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
711 }
712 else {
713 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
714 break; }
715 }
716 if (lncnt == 999) best=-29;
717 if (linnum != -1) best=-99;
718 printf("%d\n", -best);
719 return 0;
720 }
721 EOF
722 $CC -o tr_cmpnum tr_cmpnum.c -lm
723
724 if [ -x ./tr_cmpnum ]; then
725 echo "OK"
726 return 0
727 else
728 echo
729 echo "ERROR: failed to compile comparison code -- please specify"
730 echo " a C compiler using the CC environment variable."
731 exit 1
732 fi
733 }
734
735 formatresults()
736 {
737 # formatresults expt genmake depend make run results*
738
739 nm=$1
740 printf '%s %s %s %s' $2 $3 $4 $5
741 shift; shift; shift; shift; shift;
742 listPrt=$@
743 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
744 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
745 printf '%3s' $listPrt
746 # line below does not work on hp-ux_ia64 : do those substitutions later on
747 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
748
749 if [ $xx = '..' ]; then
750 printf ' N/O '
751 elif [ $xx = '--' ]; then
752 printf ' N/O '
753 elif [ $xx = 99 ]; then
754 printf ' N/O '
755 else
756 if [ $xx -ge $MATCH_CRIT ]; then
757 printf ' pass'
758 else
759 printf ' FAIL'
760 fi
761 fi
762 printf ' %s' $nm
763 printf '\n'
764
765 }
766
767 scandirs()
768 {
769 if [ $# -eq 1 ]; then
770 for arg in * ; do
771 test -f $arg/$1 && echo $arg
772 done
773 else
774 echo $*
775 fi
776 }
777
778
779 check_eedata()
780 {
781 # check_eedata size.h eedata
782 if [ $# -eq 2 ] ; then
783 if test -f $1 -a -f $2 ; then
784 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
785 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
786 if test "x$nx" = x ; then
787 rx=10
788 else
789 rx=`expr $sx % $nx`
790 fi
791 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
792 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
793 if test "x$ny" = x ; then
794 ry=20
795 else
796 ry=`expr $sy % $ny`
797 fi
798 echo `expr $rx + $ry`
799 else
800 echo '-1'
801 fi
802 else
803 echo '-2'
804 fi
805
806 }
807
808 ###############################################################################
809
810
811 # Default properties
812 debug=0
813 verbose=1
814 clean=0
815
816 IEEE=true
817 if test "x$MITGCM_IEEE" != x ; then
818 IEEE=$MITGCM_IEEE
819 fi
820 GSL=f
821
822 CLEANUP=f
823 NORUN=f
824 QUICK=f
825 NOMAKE=f
826 NOGENMAKE=f
827 NOCLEAN=f
828 NODEPEND=f
829 POSTCLEAN=f
830
831 BASH=
832 OPTFILE=NONE
833 ADDRESSES=
834 TESTDIRS=
835 SKIPDIRS=
836 MPACKDIR="../tools/mpack-1.6"
837 HAVE_MPACK=
838 MPACK=
839 COMMAND=
840 MKDEPEND=
841 if test "x$MAKE" = x ; then
842 MAKE=make
843 fi
844 if test "x$CC" = x ; then
845 CC=cc
846 fi
847 JOBS=
848 MPI=f
849 MULTI_THREAD=f
850 OUTDIR=
851 DELDIR=
852 USE_R4=
853
854 ADM=
855 OADM=
856
857 # list of pTracers to check for monitor output
858 PTRACERS_NUM="1 2 3 4 5"
859
860 MATCH_CRIT=10
861
862 printf "parsing options... "
863
864 ac_prev=
865 for ac_option ; do
866
867 # If the previous option needs an argument, assign it.
868 if test -n "$ac_prev"; then
869 eval "$ac_prev=\$ac_option"
870 ac_prev=
871 continue
872 fi
873
874 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
875
876 case $ac_option in
877
878 -help | --help | -h | --h)
879 usage ;;
880
881 -optfile | --optfile | -of | --of)
882 ac_prev=OPTFILE ;;
883 -optfile=* | --optfile=* | -of=* | --of=*)
884 OPTFILE=$ac_optarg ;;
885
886 -addr | --addr | -a | --a)
887 ac_prev=ADDRESSES ;;
888 -addr=* | --addr=* | -a=* | --a=*)
889 ADDRESSES=$ac_optarg ;;
890 -mpackdir | --mpackdir | -mpd | --mpd)
891 ac_prev=MPACKDIR ;;
892 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
893 MPACKDIR=$ac_optarg ;;
894
895 -tdir | --tdir | -t | --t)
896 ac_prev=TESTDIRS ;;
897 -tdir=* | --tdir=* | -t=* | --t=*)
898 TESTDIRS=$ac_optarg ;;
899
900 -skipdir | --skipdir | -skd | --skd)
901 ac_prev=SKIPDIRS ;;
902 -skipdir=* | --skipdir=* | -skd=* | --skd=*)
903 SKIPDIRS=$ac_optarg ;;
904
905 -bash | --bash | -b | --b)
906 ac_prev=BASH ;;
907 -bash=* | --bash=* | -b=* | --b=*)
908 BASH=$ac_optarg ;;
909
910 -command | --command | -c | --c)
911 ac_prev=COMMAND ;;
912 -command=* | --command=* | -c=* | --c=*)
913 COMMAND=$ac_optarg ;;
914
915 -makedepend | --makedepend | -md | --md)
916 ac_prev=MKDEPEND ;;
917 -makedepend=* | --makedepend=* | -md=* | --md=*)
918 MKDEPEND=$ac_optarg ;;
919
920 -make | --make | -m | --m)
921 ac_prev=MAKE ;;
922 -make=* | --make=* | -m=* | --m=*)
923 MAKE=$ac_optarg ;;
924
925 -odir | --odir)
926 ac_prev=OUTDIR ;;
927 -odir=* | --odir=*)
928 OUTDIR=$ac_optarg ;;
929
930 -ptracers | --ptracers | -ptr | --ptr)
931 ac_prev=PTRACERS_NUM ;;
932 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
933 PTRACERS_NUM=$ac_optarg ;;
934
935 -match | --match ) ac_prev=MATCH_CRIT ;;
936 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
937
938 -j | --j) ac_prev=JOBS ;;
939 -j=* | --j=*) JOBS=$ac_optarg ;;
940
941 -clean | --clean)
942 CLEANUP=t ; DELDIR=t ;;
943
944 -norun | --norun | -nr | --nr)
945 NORUN=t ;;
946 -runonly | --runonly | -ro | --ro)
947 QUICK=t ; NOMAKE=t ;;
948 -quick | --quick | -q | --q)
949 QUICK=t ;;
950 -nogenmake | --nogenmake | -ng | --ng)
951 NOGENMAKE=t ;;
952 -noclean | --noclean | -nc | --nc)
953 NOCLEAN=t ;;
954 -nodepend | --nodepend | -nd | --nd)
955 NODEPEND=t ;;
956
957 -postclean | --postclean | -pc | --pc)
958 POSTCLEAN=t ;;
959
960 -mpi) MPI=t ;;
961
962 -mth) MULTI_THREAD=t ;;
963
964 -adm | -ad) ADM=t ;;
965
966 -oad) OADM=t; NODEPEND=t ;;
967
968 -ieee) IEEE=true ;;
969 -noieee) IEEE= ;;
970 -gsl) GSL=t ;;
971
972 -verbose) verbose=2 ;;
973 -debug) debug=1 ;;
974 -quiet) verbose=0 ;;
975
976 -deldir | -dd) DELDIR=t ;;
977
978 -use_r4|-ur4) USE_R4=t ;;
979
980 -ts) TS=t;;
981 -papis) PAPIS=t;;
982 -pcls) PCL=t;;
983
984 -*)
985 echo "Error: unrecognized option: "$ac_option
986 usage
987 ;;
988
989 *)
990 echo "Error: unrecognized argument: "$ac_option
991 usage
992 ;;
993
994 esac
995
996 done
997
998 if test "x$QUICK" = xt ; then
999 NOGENMAKE=t
1000 NOCLEAN=t
1001 NODEPEND=t
1002 fi
1003
1004 #- setting for forward or ADM testing
1005 if test "x$ADM" = xt ; then
1006 code_dir=code_ad
1007 inputdir=input_ad
1008 ref_outp="output_adm.txt"
1009 EXECUTABLE="mitgcmuv_ad"
1010 elif test "x$OADM" = xt ; then
1011 code_dir=code_oad
1012 inputdir=input_oad
1013 ref_outp="output_oadm.txt"
1014 EXECUTABLE="mitgcmuv_ad"
1015 else
1016 code_dir=code
1017 inputdir=input
1018 ref_outp="output.txt"
1019 EXECUTABLE="mitgcmuv"
1020 fi
1021
1022 xx=`echo $TESTDIRS | awk '{print $1}'`
1023 if test "x$TESTDIRS" = x ; then
1024 LIST=`scandirs results/$ref_outp`
1025 elif test $xx = 'start_from' ; then
1026 xx=`echo $TESTDIRS | awk '{print $2}'`
1027 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1028 else
1029 #- expand group of experiments:
1030 LIST=" "
1031 for xx in $TESTDIRS
1032 do
1033 case $xx in
1034 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1035 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1036 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1037 ;;
1038 'tutorials')
1039 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1040 *) LIST=${LIST}" "$xx ;;
1041 esac
1042 done
1043 fi
1044 #echo 'LIST='${LIST}'<'
1045 #- skip dirs, remove duplicate and non-directory:
1046 TESTDIRS=" "
1047 count=0
1048 for xx in $LIST
1049 do
1050 yy=`echo $SKIPDIRS | grep -c $xx`
1051 if test $yy = 0 ; then
1052 if test -d $xx ; then
1053 yy=`echo $TESTDIRS | grep -c $xx`
1054 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1055 else count=1 ;
1056 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1057 fi
1058 else
1059 if test $count = 1 ; then echo -n ", \"$xx\""
1060 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1061 fi
1062 fi
1063 done
1064 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1065 #echo 'TESTDIRS='${TESTDIRS}'<'
1066
1067 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1068 OPTFILE=$MITGCM_OF
1069 fi
1070
1071 RUNLOG="run.tr_log"
1072 OUTPUTFILE=$ref_outp
1073 if test "x$COMMAND" = x ; then
1074 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1075 fi
1076 if test "x$MPI" = xt ; then
1077 OUTPUTFILE="STDOUT.0000"
1078 fi
1079
1080 echo "OK (COMMAND= $COMMAND )"
1081
1082 # set the Default List of output variables to be checked:
1083 # (use default or load experiment-specific list from file "tr_checklist")
1084 # content : 1rst = main variable used to decide if it pass or FAIL
1085 # others = number of matching digits to be printed in summary.txt
1086 if test "x$ADM" = x -a "x$OADM" = x; then
1087 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1088 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1089 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1090 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1091 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1092 else
1093 DEF_CHECK_LIST='Grad Cost Grad'
1094 EMPTY_RESULTS='.. ..'
1095 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1096 fi
1097
1098 # create the FORTRAN comparison code
1099 if test -x tr_cmpnum ; then
1100 echo "skipping comparison code build"
1101 else
1102 createcodelet
1103 fi
1104
1105 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1106 if test "x$ADDRESSES" = x ; then
1107 echo "skipping mpack build"
1108 else
1109 build_mpack
1110 fi
1111
1112 # Create a uniquely named directory to store results
1113 CMDLINE=$0
1114 for xx in "$@" ; do nw=`echo $xx | wc -w`
1115 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1116 else CMDLINE="$CMDLINE '$xx'" ; fi
1117 done
1118 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1119 MACH=`hostname`
1120 UNAMEA=`uname -a`
1121 DATE=`date +%Y%m%d`
1122 BASE="tr_"$MACH"_"$DATE"_"
1123 if test "x$OUTDIR" != x ; then
1124 BASE="tr_"$OUTDIR"_"$DATE"_"
1125 else
1126 short_name=`hostname | sed 's/\..*$//'`
1127 BASE="tr_"$short_name"_"$DATE"_"
1128 fi
1129 DNUM=0
1130 DRESULTS="$BASE$DNUM"
1131 while test -e $DRESULTS ; do
1132 DNUM=$(( $DNUM + 1 ))
1133 DRESULTS="$BASE$DNUM"
1134 done
1135 mkdir $DRESULTS
1136 RETVAL=$?
1137 if test "x$RETVAL" != x0 ; then
1138 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1139 exit 1
1140 fi
1141 SUMMARY="$DRESULTS/summary.txt"
1142 start_date=`date`
1143 echo $start_date > $SUMMARY
1144 echo 'run:' $CMDLINE >> $SUMMARY
1145 echo 'on :' $UNAMEA >> $SUMMARY
1146
1147 of_path=
1148 if test "x$OPTFILE" != xNONE ; then
1149 if test -r $OPTFILE ; then
1150 # get the path
1151 path=${OPTFILE%/*}
1152 if test "x$path" = x ; then
1153 of_path=`pwd`
1154 else
1155 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1156 fi
1157 file=${OPTFILE##*/}
1158 OPTFILE=$of_path/$file
1159 cp $OPTFILE $DRESULTS
1160 echo >> $SUMMARY
1161 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1162 else
1163 echo | tee $SUMMARY
1164 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1165 exit 1
1166 fi
1167 else
1168 echo >> $SUMMARY
1169 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1170 #-note: to be filled later after 1rst run
1171 fi
1172 echo
1173 echo >> $SUMMARY
1174 if test "x$ADM" = x -a "x$OADM" = x; then
1175 if [ $MATCH_CRIT -lt 10 ] ;
1176 then line_0="default "$MATCH_CRIT ;
1177 else line_0="default "$MATCH_CRIT ; fi
1178 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1179 line_1="G D M c m s m s m s m s"
1180 line_2="E p a R g m m e . m m e . m m e . m m e ."
1181 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1182 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1183 for ii in $PTRACERS_NUM ; do
1184 line_0="$line_0 --PTR 0"$ii"--"
1185 line_1="$line_1 m s"
1186 line_2="$line_2 m m e ."
1187 line_3="$line_3 i a a d"
1188 line_4="$line_4 n x n ."
1189 done
1190 echo "$line_0" | tee -a $SUMMARY
1191 echo "$line_1" | tee -a $SUMMARY
1192 echo "$line_2" | tee -a $SUMMARY
1193 echo "$line_3" | tee -a $SUMMARY
1194 echo "$line_4" | tee -a $SUMMARY
1195 echo " " | tee -a $SUMMARY
1196 else
1197 echo "ADJOINT=true" >> $SUMMARY
1198 echo >> $SUMMARY
1199 if [ $MATCH_CRIT -lt 10 ] ;
1200 then line_0="default "$MATCH_CRIT ;
1201 else line_0="default "$MATCH_CRIT ; fi
1202 echo "$line_0" | tee -a $SUMMARY
1203 cat << EOF | tee -a $SUMMARY
1204 G D M C G
1205 E p a R o r
1206 N n k u s a
1207 2 d e n t d
1208
1209 EOF
1210 fi
1211 echo "-------------------------------------------------------------------------------"
1212
1213 # ...and each test directory...
1214 for dir in $TESTDIRS ; do
1215
1216 # set builddir & rundir:
1217 builddir="build"
1218 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1219 rundir="run"
1220 pfxdir="tr_$rundir"
1221 if test ! -d $dir/$rundir ; then
1222 rundir=$builddir
1223 fi
1224 CODE_DIR=$dir/$code_dir
1225 BUILD_DIR=$dir/$builddir
1226
1227 # Cleanup only!
1228 if test "x$CLEANUP" = xt ; then
1229 echo -n ' --- dir:' $BUILD_DIR ': '
1230 makeclean $BUILD_DIR
1231 ( cd $BUILD_DIR
1232 rm -f $EXECUTABLE *.bak
1233 rm -f genmake_state genmake_*optfile genmake.log
1234 rm -f genmake.tr_log make.tr_log
1235 )
1236 if test -d $dir/$rundir/CVS ; then
1237 echo -n ' --- dir:' $dir/$rundir ': '
1238 run_clean $dir/$rundir
1239 fi
1240 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1241 ttd=`echo $trdir | wc -w`
1242 if test $ttd != 0 ; then
1243 echo ' --- rm dir:' $trdir
1244 ( cd $dir ; rm -rf $trdir )
1245 fi
1246 continue
1247 fi
1248
1249 # Verify that the testdir exists and contains previous
1250 # results in the correct location--or skip this directory!
1251 fout=$dir"/results/"$ref_outp
1252 if test ! -r $fout ; then
1253 echo "can't read \"$fout\" -- skipping $dir"
1254 continue
1255 fi
1256
1257 # Check for specific files for particular type of run
1258
1259 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1260 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1261 continue
1262 fi
1263 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1264 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1265 continue
1266 fi
1267 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1268 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1269 if test $retv != 0 ; then
1270 echo "input/eedata.mth tiling misfit -- skipping $dir"
1271 continue
1272 fi
1273 fi
1274
1275 # Check whether there are "extra runs" for this testdir
1276 extra_runs=
1277 if test "x$NORUN" = xf ; then
1278 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1279 fi
1280 #echo "ex_run_dirs='$ex_run_dirs'"
1281 for exd in $ex_run_dirs ; do
1282 name=`echo $exd | sed -e "s/$inputdir\.//"`
1283 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1284 outf="$dir/results/$refExOut"
1285 if test -f $outf -a -r $outf ; then
1286 if test "x$MULTI_THREAD" = "xt" ; then
1287 if test -r $dir"/"$exd"/eedata.mth" ; then
1288 if test "x$MPI" = "xt" ; then
1289 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1290 if test $retv = 0 ; then
1291 extra_runs="$extra_runs $name"
1292 else
1293 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1294 fi
1295 else
1296 extra_runs="$extra_runs $name"
1297 fi
1298 #else echo $dir"/"$exd"/eedata.mth: not found"
1299 fi
1300 else
1301 extra_runs="$extra_runs $name"
1302 fi
1303 fi
1304 done
1305
1306 echo
1307 if test "x$extra_runs" = "x" ; then
1308 echo "Experiment: $dir"
1309 else
1310 echo "Experiment: $dir ; extra_runs=$extra_runs"
1311 fi
1312 echo
1313 unset genmake makedepend make run
1314 results=$EMPTY_RESULTS
1315
1316 # Create an output dir for each OPTFILE/tdir combination
1317 locDIR=$DRESULTS"/"$dir
1318 mkdir $locDIR
1319 CDIR=`pwd`"/$locDIR"
1320
1321 if test "x$NORUN" = xt ; then
1322 run=N
1323 genmakemodel $dir/$builddir && genmake=Y \
1324 && makeclean $dir/$builddir \
1325 && symlink_mpifiles $dir $code_dir $builddir \
1326 && makedependmodel $dir/$builddir && makedepend=Y \
1327 && makemodel $dir/$builddir && make=Y
1328 else
1329 genmakemodel $dir/$builddir && genmake=Y \
1330 && makeclean $dir/$builddir \
1331 && symlink_mpifiles $dir $code_dir $builddir \
1332 && makedependmodel $dir/$builddir && makedepend=Y \
1333 && makemodel $dir/$builddir && make=Y \
1334 && run_clean $dir/$rundir \
1335 && linkdata $dir/$rundir $inputdir \
1336 && runmodel $dir/$rundir && run=Y \
1337 && results=`testoutput_run $dir $rundir $ref_outp`
1338 fi
1339 #echo "results='$results'"
1340
1341 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1342 echo 1>&2
1343 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1344 touch $locDIR"/summary.txt"
1345 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1346 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1347 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1348 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1349 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1350 if test "x$ADM" = xt ; then
1351 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1352 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1353 >> $locDIR"/summary.txt"
1354 fi
1355
1356 for ex in $extra_runs ; do
1357 unset run
1358 results=$EMPTY_RESULTS
1359 # reference output file
1360 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1361 # Create an output dir for each OPTFILE/tdir.ex combination
1362 locDIR=$DRESULTS"/"$dir"."$ex
1363 mkdir $locDIR
1364 CDIR=`pwd`"/$locDIR"
1365 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1366 run_clean $dir/$pfxdir.$ex
1367 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1368 runmodel $dir/$pfxdir.$ex && run=Y \
1369 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1370 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1371 fres="$fres.$ex"
1372 echo 1>&2
1373 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1374 touch $locDIR"/summary.txt"
1375 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1376 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1377 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1378 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1379 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1380 if test "x$ADM" = xt ; then
1381 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1382 grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \
1383 >> $locDIR"/summary.txt"
1384 fi
1385 if test "x$POSTCLEAN" = xt ; then
1386 run_clean $dir/$pfxdir.$ex
1387 fi
1388 done
1389
1390 if test -f $DRESULTS"/"genmake_state ; then : ; else
1391 if test -f $dir/$builddir/Makefile ; then
1392 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1393 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1394 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1395 echo " $mkOpt" >> $DRESULTS/genmake_state
1396 if test "x$OPTFILE" = xNONE ; then
1397 eval $mkOpt
1398 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1399 $SUMMARY > tr_0.tmp_log
1400 RETVAL=$?
1401 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1402 cp tr_0.tmp_log $SUMMARY
1403 else rm -f tr_0.tmp_log
1404 fi
1405 fi
1406 gmkLog=$dir/$builddir/genmake.log
1407 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1408 RETVAL=$?
1409 if test "x$RETVAL" = x0 ; then
1410 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1411 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1412 | grep -v '^... compiler version ' > tr_1.tmp_log
1413 sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1414 >> $DRESULTS/genmake_state
1415 rm -f tr_1.tmp_log
1416 fi
1417 fi
1418 fi
1419 #postclean $dir/$builddir
1420 if test "x$POSTCLEAN" = xt ; then
1421 makeclean $dir/$builddir \
1422 && run_clean $dir/$rundir
1423 fi
1424
1425 echo "-------------------------------------------------------------------------------"
1426
1427 done
1428
1429 printf "Start time: " >> $SUMMARY
1430 echo "$start_date" >> $SUMMARY
1431 printf "End time: " >> $SUMMARY
1432 date >> $SUMMARY
1433
1434 # If addresses were supplied and mpack built successfully, then try
1435 # to send email using mpack.
1436 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1437 echo "No results email was sent."
1438 else
1439 if test "x$HAVE_MPACK" = xt ; then
1440 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1441 && gzip $DRESULTS".tar" \
1442 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1443 RETVAL=$?
1444 if test "x$RETVAL" != x0 ; then
1445 echo
1446 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1447 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1448 echo " summary of results from the directory \"$DRESULTS\"."
1449 echo
1450 else
1451 echo
1452 echo "An email containing results was sent to the following addresses:"
1453 echo " \"$ADDRESSES\""
1454 echo
1455 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1456 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1457 fi
1458 fi
1459 fi
1460
1461 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1462 rm -f tr_cmpnum.c tr_cmpnum
1463 fi
1464
1465 if test "x$CLEANUP" != xt ; then
1466 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1467 if test -e tr_out.txt ; then
1468 mv tr_out.txt tr_out.txt.old
1469 fi
1470 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1471 fi
1472
1473 if test "x$DELDIR" = xt ; then
1474 rm -rf $DRESULTS
1475 fi

  ViewVC Help
Powered by ViewVC 1.1.22