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Revision 1.145 - (show annotations) (download)
Tue Nov 2 00:55:40 2010 UTC (9 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.144: +12 -8 lines
put standard output of "genmake2" into file "genmake.log" (previously in make.log)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.144 2010/11/01 00:25:16 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
20 echo " (-optfile|-of) STRING list of optfiles to use"
21 echo " (-addr|-a) STRING list of email recipients"
22 echo " (DEF=\"\" no email is sent)"
23 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
24 echo " (DEF=\"../tools/mpack-1.6\")"
25 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
26 echo " (recognized groups: basic, tutorials)"
27 echo " (DEF=\"\" which test all)"
28 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
29 echo " (DEF=\"\" which test all)"
30 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
31 echo " Bourne-compatible \"sh\" shell"
32 echo " (DEF=\"\" for \"bash\")"
33 echo " (-adm|-ad) perform an adjoint run"
34 echo " (-oad) perform an OpenAD adjoint run"
35 echo " (-command|-c) STRING command to run"
36 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
37 echo " (-make|-m) STRING command to use for \"make\""
38 echo " (DEF=\"make\")"
39 echo " (-odir) STRING used to build output directory name"
40 echo " (DEF=\"hostname\")"
41 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
42 echo " (DEF=\"1 2 3 4 5\")"
43 echo " (-match) NUMBER Matching Criteria (number of digits)"
44 echo " (DEF=\"$MATCH_CRIT\")"
45 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
46 echo " (-clean) *ONLY* run \"make CLEAN\""
47 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
48 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
49 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
50 echo " (-nogenmake|-ng) skip the genmake stage"
51 echo " (-noclean|-nc) skip the \"make clean\" stage"
52 echo " (-nodepend|-nd) skip the \"make depend\" stage"
53 echo " (-deldir|-dd) on success, delete the output directory"
54 echo " (-ts) provide timing information per timestep"
55 echo " (-papis) provide MFlop/s per timestep using PAPI"
56 echo " (-pcls) provide MFlop/s per timestep using PCL"
57 echo
58 echo "and where STRING can be a whitespace-delimited list"
59 echo "such as:"
60 echo
61 echo " -t 'exp0 exp2 exp3' "
62 echo " -addr='abc@123.com testing@home.org'"
63 echo
64 echo "provided that the expression is properly quoted within the current"
65 echo "shell (note the use of single quotes to protect white space)."
66 echo
67 exit 1
68 }
69
70 # build the mpack utility
71 build_mpack()
72 {
73 printf "building the mpack utility... "
74 MPACK="$MPACKDIR/mpack"
75 if test ! -x $MPACK ; then
76 if test ! -d $MPACKDIR ; then
77 echo
78 echo "Error: can't find \"$MPACKDIR\""
79 echo " are you sure this program is being run in the correct "
80 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
81 echo
82 HAVE_MPACK=f
83 fi
84 if test "x$CC" = x ; then
85 export CC=cc
86 fi
87 printf "building mpack (using CC=$CC)... "
88 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
89 RETVAL=$?
90 if test "x$RETVAL" != x0 ; then
91 echo
92 echo "Error building the mpack tools at: $MPACK_DIR"
93 echo
94 HAVE_MPACK=f
95 else
96 rm -f tr_build_mpack.out
97 HAVE_MPACK=t
98 echo "done"
99 fi
100 else
101 HAVE_MPACK=t
102 echo "already exist"
103 fi
104 }
105
106 testoutput_var()
107 {
108 # testoutput_var dir s1 label subdir reference_output
109 #
110 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
111 # with same output from reference file $dir/results/$reference_output
112 # using search strings s1 and text label
113
114 if [ $debug -gt 0 ]; then
115 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
116 fi
117 if [ -r $1/$4/$OUTPUTFILE ]; then
118 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
119 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
120 if [ $lncntA -lt 2 ]; then
121 if [ $verbose -gt 0 ]; then
122 echo Not enough lines of output when searching for "$2" 1>&2
123 fi
124 return 99
125 fi
126 else
127 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
128 return 99
129 fi
130 if [ $debug -gt 0 ]; then
131 echo testoutput_var: grep "$2" $1/results/$5 1>&2
132 fi
133 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
134 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
135 if [ $lncntB -lt 2 ]; then
136 if [ $verbose -gt 0 ]; then
137 echo Not enough lines of output when searching for "$2" 1>&2
138 fi
139 return 99
140 fi
141 if [ $lncntA -ne $lncntB ]; then
142 if [ $verbose -gt 0 ]; then
143 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
144 fi
145 return 99
146 fi
147 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
148 if [ $has_nan -gt 0 ] ; then
149 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
150 return 99
151 fi
152 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
153 if [ $has_inf -gt 0 ] ; then
154 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
155 return 99
156 fi
157 if [ $debug -gt 0 ]; then
158 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
159 fi
160 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
161 if [ $debug -gt 0 ]; then
162 echo testoutput_var: compare_lines 1>&2
163 fi
164 if [ $verbose -gt 1 ]; then
165 cat tmp3.txt 1>&2
166 fi
167 echo "-1" >> tmp3.txt
168 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
169 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
170 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
171 if [ $digits_of_similarity -eq 99 ]; then
172 if [ $verbose -gt 0 ]; then
173 echo testoutput_var: No comparison was available for \"$3\" 1>&2
174 fi
175 digits_of_similarity=99
176 else
177 if [ $verbose -gt 0 ]; then
178 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
179 fi
180 fi
181 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
182
183 return $digits_of_similarity
184 }
185
186 testoutput_run()
187 {
188 # testoutput_run directory subdir reference_output
189 #
190 # test output from 1 run in "directory"
191 # --> same processing for adjoint & forward test
192 # default list of output variables to be checked:
193 # 1rst : main variable used to decide if it pass or FAIL
194 # others : number of matching digits to be printed in summary.txt
195 listChk=$DEF_CHECK_LIST
196 # load experiment-specific list from file "tr_checklist" (if it exist)
197 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
198 sVar=`echo $listChk | awk '{print $1}'`
199 # remove 1rst var and expand the list: + => min max mean s.d
200 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
201 | sed 's/+//g' | sed "s/^$sVar//"`
202 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
203 # check for ptracer output in reference_output file :
204 outpref=$1/results/$3
205 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
206 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
207 for ii in $PTRACERS_NUM ; do
208 ptrfound=0
209 for jj in $ptr_mon ; do
210 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
211 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
212 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
213 done
214 if test $ptrfound = '1' ; then
215 eval "HAVE_PTR0"$ii"=t"
216 else
217 eval "HAVE_PTR0"$ii"=f"
218 if test "x$ADM" = x -a "x$OADM" = x; then
219 # remove this ptr from the list of output variable to check
220 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
221 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
222 fi
223 fi
224 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
225 done
226 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
227 if test $tst != 1 ; then
228 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
229 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
230 echo "==> WARNING: in checked list:" $listVar 1>&2
231 #- put it back once:
232 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
233 fi
234 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
235 echo "listVar='$listVar'" > $locDIR"/summary.txt"
236 allargs=""
237 for xx in $listVar
238 do
239 case $xx in
240 'PS') if [ $debug -gt 0 ]
241 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
242 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
243 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
244 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
245 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
246 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
247 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
248 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
249 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
250 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
251 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
252 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
253 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
254 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
255 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
256 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
257 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
258 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
259 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
260 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
261 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
262 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
263 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
264 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
265 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
266 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
267 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
268 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
269 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
270 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
271 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
272 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
273 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
274 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
275 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
276 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
277 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
278 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
279 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
280 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
281 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
282 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
283 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
284 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
285 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
286 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
287 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
288 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
289 esac
290 if test $xx = $sVar
291 then allargs="$allargs > $yy <"
292 else allargs="$allargs $yy"
293 fi
294 done
295
296 nbVar=`echo $listVar | awk '{print NF}'`
297 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
298 #-- fill line (up to standard length) with dot:
299 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
300 echo $allargs $adNul
301 else
302 echo $allargs
303 fi
304 # <-- same processing for adjoint & forward test
305 }
306
307 genmakemodel()
308 {
309 # genmakemodel directory
310 if test "x$NOGENMAKE" = xt ; then
311 echo "genmake skipped!"
312 else
313 if test "x$BASH" = x ; then
314 GENMAKE2="../../../tools/genmake2"
315 else
316 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
317 fi
318 (
319 cd $1;
320 command="$GENMAKE2 -ds -m $MAKE"
321 if test "x$MKDEPEND" != x ; then
322 command="$command -makedepend=$MKDEPEND"
323 fi
324 if test "x$ADM" = xt ; then
325 command="$command --mods=../code_ad"
326 elif test "x$OADM" = xt ; then
327 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
328 else
329 command="$command -mods=../code"
330 fi
331 if test "x$OPTFILE" != xNONE ; then
332 command="$command -optfile=$OPTFILE"
333 fi
334 if test "x$IEEE" != x ; then
335 command="$command -ieee"
336 fi
337 if test "x$GSL" = xt ; then
338 command="$command -gsl"
339 fi
340 if test "x$MPI" = xt ; then
341 command="$command -mpi"
342 fi
343 if test "x$MULTI_THREAD" = xt ; then
344 #- run multi-threaded using OpenMP:
345 command="$command -omp"
346 fi
347 if test "x$USE_R4" = xt ; then
348 command="$command -use_r4"
349 fi
350 if test "x$TS" = xt ; then
351 command="$command -ts"
352 fi
353 if test "x$PAPIS" = xt ; then
354 command="$command -papis"
355 else
356 if test "x$PCLS" = xt ; then
357 command="$command -pcls"
358 fi
359 fi
360 printf 'genmake ... '
361 eval $command > genmake.log 2>&1
362 RETVAL=$?
363 # Reduce the size of the testing emails!
364 head -100 Makefile > $CDIR/Makefile_head
365 if test "x$RETVAL" != x0 ; then
366 tail genmake.log
367 echo "genmakemodel: genmake failed"
368 cp genmake_* genmake.log $CDIR
369 return 1
370 else
371 echo "successful"
372 fi
373 )
374 fi
375 }
376
377 makeclean()
378 {
379 # makeclean directory
380 if test "x$NODEPEND" = xf ; then rm -f $1/make.log ; fi
381 if test "x$NOCLEAN" = xt ; then
382 echo "make Clean skipped!"
383 else
384 (
385 cd $1;
386 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
387 if test -r Makefile ; then
388 printf 'clean build-dir: make Clean ... '
389 rm -f Makefile.old
390 $MAKE Clean >> make.log 2>&1
391 RETVAL=$?
392 if test "x$RETVAL" != x0 ; then
393 tail make.log
394 echo "makeclean: \"make Clean\" failed"
395 cp make.log $CDIR"/make.log"
396 return 1
397 fi
398 echo successful
399 else
400 echo ''
401 fi
402 exit 0
403 )
404 fi
405 }
406
407 run_clean()
408 {
409 # run_clean directory
410 if test "x$NOCLEAN" = xt ; then
411 echo "run_clean skipped!"
412 else
413 (
414 cd $1;
415 printf 'clean run-dir ... '
416 # part of what is done after "make clean" when doing "make CLEAN"
417 find . -name "*.meta" -exec rm {} \;
418 find . -name "*.data" -exec rm {} \;
419 find . -name "fort.*" -exec rm {} \;
420 find . -type l -exec rm {} \;
421 rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime
422 rm -rf mnc_test_*
423 rm -f *_MIT_CE_000.opt0000 costfunction*0000
424 echo successful
425 exit 0
426 )
427 fi
428 }
429
430 makedependmodel()
431 {
432 # makedependmodel directory
433 if test "x$NODEPEND" = xt ; then
434 echo "make depend skipped!"
435 else
436 (
437 cd $1;
438 printf 'make depend ... '
439 $MAKE depend >> make.log 2>&1
440 RETVAL=$?
441 if test "x$RETVAL" != x0 ; then
442 tail make.log
443 echo "makedependmodel: make depend failed"
444 cp make.log $CDIR"/make.log"
445 return 1
446 else
447 echo successful
448 fi
449 )
450 fi
451 }
452
453 makemodel()
454 {
455 # makemodel directory
456 (
457 if test "x$NOMAKE" = xt ; then
458 cd $1;
459 if test -x $EXECUTABLE ; then
460 echo "make skipped!"
461 else
462 echo "no executable!"
463 return 2
464 fi
465 else
466 cd $1;
467 if test -r Makefile ; then
468 printf 'make ... '
469 if test "x$ADM" = xt ; then
470 $MAKE adall >> make.log 2>&1
471 elif test "x$OADM" = xt ; then
472 $MAKE adAll >> make.log 2>&1
473 else
474 if test "x$JOBS" = x ; then
475 $MAKE >> make.log 2>&1
476 else
477 $MAKE -j $JOBS >> make.log 2>&1
478 fi
479 fi
480 RETVAL=$?
481 if test "x$RETVAL" != x0 ; then
482 tail make.log
483 echo failed
484 cp make.log $CDIR"/make.log"
485 rm -f $EXECUTABLE
486 return 1
487 else
488 echo successful
489 fi
490 fi
491 fi
492 )
493 }
494
495 symlink_mpifiles()
496 {
497 # Put special links so that MPI specific files are used
498 # This MUST be invoked between makeclean and makelinks because
499 # the Makefile will link to non-mpi files by default
500
501 dir=$1
502 code_dir=$2
503 BUILD_DIR=$dir/$3
504 CODE_DIR=$dir/$code_dir
505
506 # These are files that should replace their counter-part when using -mpi
507 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
508
509 # Is this an MPI run?
510 if test "x$MPI" = xt ; then
511 # YES: We symbolically link these files to the build
512 # dir so long as there is no real file in place
513 for ii in $MPI_FILES ; do
514 i=`echo $ii | sed 's:^\./::'`
515 name=`echo $i | sed 's:_mpi::' `
516 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
517 RETVAL=$?
518 if test "x$RETVAL" != x0 ; then
519 if ! test -f $BUILD_DIR/$i ; then
520 #echo Linking $name to $i
521 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
522 fi
523 fi
524 done
525 else
526 # NO: We undo any _mpi symbolically linked files
527 for ii in $MPI_FILES ; do
528 i=`echo $ii | sed 's:^\./::'`
529 name=`echo $i | sed 's:_mpi::' `
530 if test -L $BUILD_DIR/$name ; then
531 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
532 RETVAL=$?
533 if test "x$RETVAL" = x0 ; then
534 #echo Un-linking $name from $linktarg
535 rm -f $BUILD_DIR/$name
536 fi
537 fi
538 done
539 fi
540
541 }
542
543 linkdata()
544 {
545 # linkdata run_dir input_dir_1 input_dir_2 ...
546 #
547 # symbolically link data files to run directory
548 if test -d $1 ; then
549 (
550 cd $1 ; shift
551 echo 'linkdata from dirs:' $*
552 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
553 for xx in $inpMPI ; do
554 if test -r "../"$1"/"$xx ; then
555 # found 1 _mpi sfx file in 1rst input dir and it is readable
556 yy=`echo $xx | sed 's:\.mpi$::'`
557 if test "x$MPI" = "xt" ; then
558 # mpi test: remove symbolic link & link _mpi sfx file
559 if test -h $yy ; then rm -f $yy ; fi
560 if test ! -r $yy ; then
561 ln -sf "../"$1"/"$xx $yy ;
562 printf " $xx" 1>&2
563 fi
564 else
565 # not mpi test: remove symbolic link
566 if test -h $yy ; then rm -f $yy ; fi
567 fi
568 fi
569 done
570 if test -r "../"$1"/eedata.mth" ; then
571 # found eedata.mth in 1rst input dir and it is readable
572 if test "x$MULTI_THREAD" = "xt" ; then
573 # multi-threaded test: remove symbolic link & link eedata.mth
574 if test -h eedata ; then rm -f eedata ; fi
575 if test ! -r eedata ; then
576 ln -sf "../"$1"/eedata.mth" eedata ;
577 printf ' eedata.mth' 1>&2
578 fi
579 else
580 # not multi-threaded test: remove eedata symbolic link
581 if test -h eedata ; then rm -f eedata ; fi
582 fi
583 fi
584 prevDir='NONE'
585 for ldir in $* ; do
586 if test -d "../"$ldir -a $ldir != $prevDir ; then
587 printf " ldir=${ldir}:" 1>&2
588 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
589 for i in $files ; do
590 if test ! -d "../"$ldir/$i ; then
591 if test ! -r $i ; then
592 printf ' '$i 1>&2
593 ln -sf "../"$ldir"/"$i $i
594 fi
595 fi
596 done
597 printf ' ;' 1>&2
598 if test -x "../"$ldir"/"prepare_run ; then
599 "../"$ldir"/"prepare_run 1>&2
600 else
601 echo '' 1>&2
602 fi
603 fi
604 prevDir=$ldir
605 done
606 )
607 fi
608 }
609
610 runmodel()
611 {
612 # runmodel directory
613 #
614 # runs "$COMMAND in "directory"
615 # (where "$COMMAND" is relative to "directory")
616 (
617 cd $1
618 printf 'runmodel in %s ... ' $1
619 if test -L $EXECUTABLE ; then
620 if test -x "../"$builddir"/"$EXECUTABLE ; then
621 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
622 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
623 else rm -f $EXECUTABLE
624 fi
625 fi
626 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
627 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
628 ln -sf "../"$builddir"/"$EXECUTABLE .
629 fi
630 if test ! -x $EXECUTABLE ; then
631 rm -f $RUNLOG ; touch $RUNLOG
632 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
633 echo " no executable:" $EXECUTABLE >> $RUNLOG
634 RETVAL=8
635 ENDVAL=-1
636 else
637 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
638 # output do not exist or is older than executable:
639 rm -f $RUNLOG ; touch $RUNLOG
640 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
641 ( eval $COMMAND ) >> $RUNLOG 2>&1
642 RETVAL=$?
643 else
644 RETVAL=0
645 if test -f $RUNLOG ; then
646 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
647 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
648 else
649 touch $RUNLOG
650 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
651 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
652 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
653 fi
654 fi
655 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
656 fi
657 rm -f run.log_tmp
658 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
659 echo successful
660 printf '=> output from running in %s :\n' $1 1>&2
661 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
662 # === Reduce the size of the testing emails!
663 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
664 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
665 return 0
666 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
667 #-- for some weird cases (run is finihed but with error code)
668 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
669 printf '=> output from running in %s :\n' $1 1>&2
670 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
671 return 0
672 else
673 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
674 printf '=> output from running in %s :\n' $1 1>&2
675 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
676 cp $RUNLOG $CDIR"/"$RUNLOG
677 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
678 return 1
679 fi
680 )
681 }
682
683 createcodelet()
684 {
685 # create codelet for comparing model output
686
687 printf "creating the comparison code (using CC=$CC)... "
688 cat > tr_cmpnum.c <<EOF
689 #include <stdio.h>
690 #include <math.h>
691 int main( int argc, char** argv ) {
692 int linnum,cmplin,best,lncnt;
693 double a,b,abave,relerr;
694 best = -22;
695 lncnt = 0;
696 while( 1 & ( (lncnt+=1) < 999 ) ) {
697 scanf("%d", &linnum);
698 if (linnum == -1) break;
699 scanf("%lf", &a); scanf("%lf", &b);
700 abave = 0.5*(fabs(a)+fabs(b));
701 if ( abave == abave ) {
702 if (abave > 0.0) {
703 relerr=fabs(a-b)/abave;
704 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
705 else { cmplin = -16 ; }
706 best = (best > cmplin) ? best : cmplin; }
707 else { cmplin = -22 ; }
708 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
709 }
710 else {
711 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
712 break; }
713 }
714 if (lncnt == 999) best=-29;
715 if (linnum != -1) best=-99;
716 printf("%d\n", -best);
717 return 0;
718 }
719 EOF
720 $CC -o tr_cmpnum tr_cmpnum.c -lm
721
722 if [ -x ./tr_cmpnum ]; then
723 echo "OK"
724 return 0
725 else
726 echo
727 echo "ERROR: failed to compile comparison code -- please specify"
728 echo " a C compiler using the CC environment variable."
729 exit 1
730 fi
731 }
732
733 formatresults()
734 {
735 # formatresults expt genmake depend make run results*
736
737 nm=$1
738 printf '%s %s %s %s' $2 $3 $4 $5
739 shift; shift; shift; shift; shift;
740 listPrt=$@
741 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
742 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
743 printf '%3s' $listPrt
744 # line below does not work on hp-ux_ia64 : do those substitutions later on
745 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
746
747 if [ $xx = '..' ]; then
748 printf ' N/O '
749 elif [ $xx = '--' ]; then
750 printf ' N/O '
751 elif [ $xx = 99 ]; then
752 printf ' N/O '
753 else
754 if [ $xx -ge $MATCH_CRIT ]; then
755 printf ' pass'
756 else
757 printf ' FAIL'
758 fi
759 fi
760 printf ' %s' $nm
761 printf '\n'
762
763 }
764
765 scandirs()
766 {
767 if [ $# -eq 1 ]; then
768 for arg in * ; do
769 test -f $arg/$1 && echo $arg
770 done
771 else
772 echo $*
773 fi
774 }
775
776
777 check_eedata()
778 {
779 # check_eedata size.h eedata
780 if [ $# -eq 2 ] ; then
781 if test -f $1 -a -f $2 ; then
782 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
783 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
784 if test "x$nx" = x ; then
785 rx=10
786 else
787 rx=`expr $sx % $nx`
788 fi
789 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
790 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
791 if test "x$ny" = x ; then
792 ry=20
793 else
794 ry=`expr $sy % $ny`
795 fi
796 echo `expr $rx + $ry`
797 else
798 echo '-1'
799 fi
800 else
801 echo '-2'
802 fi
803
804 }
805
806 ###############################################################################
807
808
809 # Default properties
810 debug=0
811 verbose=1
812 clean=0
813
814 IEEE=true
815 if test "x$MITGCM_IEEE" != x ; then
816 IEEE=$MITGCM_IEEE
817 fi
818 GSL=f
819
820 CLEANUP=f
821 NORUN=f
822 QUICK=f
823 NOMAKE=f
824 NOGENMAKE=f
825 NOCLEAN=f
826 NODEPEND=f
827 POSTCLEAN=f
828
829 BASH=
830 OPTFILE=NONE
831 ADDRESSES=
832 TESTDIRS=
833 SKIPDIRS=
834 MPACKDIR="../tools/mpack-1.6"
835 HAVE_MPACK=
836 MPACK=
837 COMMAND=
838 MKDEPEND=
839 if test "x$MAKE" = x ; then
840 MAKE=make
841 fi
842 if test "x$CC" = x ; then
843 CC=cc
844 fi
845 JOBS=
846 MPI=f
847 MULTI_THREAD=f
848 OUTDIR=
849 DELDIR=
850 USE_R4=
851
852 ADM=
853 OADM=
854
855 # list of pTracers to check for monitor output
856 PTRACERS_NUM="1 2 3 4 5"
857
858 MATCH_CRIT=13
859
860 printf "parsing options... "
861
862 ac_prev=
863 for ac_option ; do
864
865 # If the previous option needs an argument, assign it.
866 if test -n "$ac_prev"; then
867 eval "$ac_prev=\$ac_option"
868 ac_prev=
869 continue
870 fi
871
872 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
873
874 case $ac_option in
875
876 -help | --help | -h | --h)
877 usage ;;
878
879 -optfile | --optfile | -of | --of)
880 ac_prev=OPTFILE ;;
881 -optfile=* | --optfile=* | -of=* | --of=*)
882 OPTFILE=$ac_optarg ;;
883
884 -addr | --addr | -a | --a)
885 ac_prev=ADDRESSES ;;
886 -addr=* | --addr=* | -a=* | --a=*)
887 ADDRESSES=$ac_optarg ;;
888 -mpackdir | --mpackdir | -mpd | --mpd)
889 ac_prev=MPACKDIR ;;
890 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
891 MPACKDIR=$ac_optarg ;;
892
893 -tdir | --tdir | -t | --t)
894 ac_prev=TESTDIRS ;;
895 -tdir=* | --tdir=* | -t=* | --t=*)
896 TESTDIRS=$ac_optarg ;;
897
898 -skipdir | --skipdir | -skd | --skd)
899 ac_prev=SKIPDIRS ;;
900 -skipdir=* | --skipdir=* | -skd=* | --skd=*)
901 SKIPDIRS=$ac_optarg ;;
902
903 -bash | --bash | -b | --b)
904 ac_prev=BASH ;;
905 -bash=* | --bash=* | -b=* | --b=*)
906 BASH=$ac_optarg ;;
907
908 -command | --command | -c | --c)
909 ac_prev=COMMAND ;;
910 -command=* | --command=* | -c=* | --c=*)
911 COMMAND=$ac_optarg ;;
912
913 -makedepend | --makedepend | -md | --md)
914 ac_prev=MKDEPEND ;;
915 -makedepend=* | --makedepend=* | -md=* | --md=*)
916 MKDEPEND=$ac_optarg ;;
917
918 -make | --make | -m | --m)
919 ac_prev=MAKE ;;
920 -make=* | --make=* | -m=* | --m=*)
921 MAKE=$ac_optarg ;;
922
923 -odir | --odir)
924 ac_prev=OUTDIR ;;
925 -odir=* | --odir=*)
926 OUTDIR=$ac_optarg ;;
927
928 -ptracers | --ptracers | -ptr | --ptr)
929 ac_prev=PTRACERS_NUM ;;
930 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
931 PTRACERS_NUM=$ac_optarg ;;
932
933 -match | --match ) ac_prev=MATCH_CRIT ;;
934 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
935
936 -j | --j) ac_prev=JOBS ;;
937 -j=* | --j=*) JOBS=$ac_optarg ;;
938
939 -clean | --clean)
940 CLEANUP=t ; DELDIR=t ;;
941
942 -norun | --norun | -nr | --nr)
943 NORUN=t ;;
944 -runonly | --runonly | -ro | --ro)
945 QUICK=t ; NOMAKE=t ;;
946 -quick | --quick | -q | --q)
947 QUICK=t ;;
948 -nogenmake | --nogenmake | -ng | --ng)
949 NOGENMAKE=t ;;
950 -noclean | --noclean | -nc | --nc)
951 NOCLEAN=t ;;
952 -nodepend | --nodepend | -nd | --nd)
953 NODEPEND=t ;;
954
955 -postclean | --postclean | -pc | --pc)
956 POSTCLEAN=t ;;
957
958 -mpi) MPI=t ;;
959
960 -mth) MULTI_THREAD=t ;;
961
962 -adm | -ad) ADM=t ;;
963
964 -oad) OADM=t; NODEPEND=t ;;
965
966 -ieee) IEEE=true ;;
967 -noieee) IEEE= ;;
968 -gsl) GSL=t ;;
969
970 -verbose) verbose=2 ;;
971 -debug) debug=1 ;;
972 -quiet) verbose=0 ;;
973
974 -deldir | -dd) DELDIR=t ;;
975
976 -use_r4|-ur4) USE_R4=t ;;
977
978 -ts) TS=t;;
979 -papis) PAPIS=t;;
980 -pcls) PCL=t;;
981
982 -*)
983 echo "Error: unrecognized option: "$ac_option
984 usage
985 ;;
986
987 *)
988 echo "Error: unrecognized argument: "$ac_option
989 usage
990 ;;
991
992 esac
993
994 done
995
996 if test "x$QUICK" = xt ; then
997 NOGENMAKE=t
998 NOCLEAN=t
999 NODEPEND=t
1000 fi
1001
1002 #- setting for forward or ADM testing
1003 if test "x$ADM" = xt ; then
1004 code_dir=code_ad
1005 inputdir=input_ad
1006 ref_outp="output_adm.txt"
1007 EXECUTABLE="mitgcmuv_ad"
1008 elif test "x$OADM" = xt ; then
1009 code_dir=code_oad
1010 inputdir=input_oad
1011 ref_outp="output_oadm.txt"
1012 EXECUTABLE="mitgcmuv_ad"
1013 else
1014 code_dir=code
1015 inputdir=input
1016 ref_outp="output.txt"
1017 EXECUTABLE="mitgcmuv"
1018 fi
1019
1020 xx=`echo $TESTDIRS | awk '{print $1}'`
1021 if test "x$TESTDIRS" = x ; then
1022 LIST=`scandirs results/$ref_outp`
1023 elif test $xx = 'start_from' ; then
1024 xx=`echo $TESTDIRS | awk '{print $2}'`
1025 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1026 else
1027 #- expand group of experiments:
1028 LIST=" "
1029 for xx in $TESTDIRS
1030 do
1031 case $xx in
1032 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1033 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1034 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1035 ;;
1036 'tutorials')
1037 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1038 *) LIST=${LIST}" "$xx ;;
1039 esac
1040 done
1041 fi
1042 #echo 'LIST='${LIST}'<'
1043 #- skip dirs, remove duplicate and non-directory:
1044 TESTDIRS=" "
1045 count=0
1046 for xx in $LIST
1047 do
1048 yy=`echo $SKIPDIRS | grep -c $xx`
1049 if test $yy = 0 ; then
1050 if test -d $xx ; then
1051 yy=`echo $TESTDIRS | grep -c $xx`
1052 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1053 else count=1 ;
1054 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1055 fi
1056 else
1057 if test $count = 1 ; then echo -n ", \"$xx\""
1058 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1059 fi
1060 fi
1061 done
1062 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1063 #echo 'TESTDIRS='${TESTDIRS}'<'
1064
1065 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1066 OPTFILE=$MITGCM_OF
1067 fi
1068
1069 RUNLOG="run.log"
1070 OUTPUTFILE=$ref_outp
1071 if test "x$COMMAND" = x ; then
1072 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1073 fi
1074 if test "x$MPI" = xt ; then
1075 OUTPUTFILE="STDOUT.0000"
1076 fi
1077
1078 echo "OK (COMMAND= $COMMAND )"
1079
1080 # set the Default List of output variables to be checked:
1081 # (use default or load experiment-specific list from file "tr_checklist")
1082 # content : 1rst = main variable used to decide if it pass or FAIL
1083 # others = number of matching digits to be printed in summary.txt
1084 if test "x$ADM" = x -a "x$OADM" = x; then
1085 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1086 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1087 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1088 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1089 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1090 else
1091 DEF_CHECK_LIST='Grad Cost Grad'
1092 EMPTY_RESULTS='.. ..'
1093 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1094 fi
1095
1096 # create the FORTRAN comparison code
1097 if test -x tr_cmpnum ; then
1098 echo "skipping comparison code build"
1099 else
1100 createcodelet
1101 fi
1102
1103 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1104 if test "x$ADDRESSES" = x ; then
1105 echo "skipping mpack build"
1106 else
1107 build_mpack
1108 fi
1109
1110 # Create a uniquely named directory to store results
1111 CMDLINE=$0
1112 for xx in "$@" ; do nw=`echo $xx | wc -w`
1113 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1114 else CMDLINE="$CMDLINE '$xx'" ; fi
1115 done
1116 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1117 MACH=`hostname`
1118 UNAMEA=`uname -a`
1119 DATE=`date +%Y%m%d`
1120 BASE="tr_"$MACH"_"$DATE"_"
1121 if test "x$OUTDIR" != x ; then
1122 BASE="tr_"$OUTDIR"_"$DATE"_"
1123 else
1124 short_name=`hostname | sed 's/\..*$//'`
1125 BASE="tr_"$short_name"_"$DATE"_"
1126 fi
1127 DNUM=0
1128 DRESULTS="$BASE$DNUM"
1129 while test -e $DRESULTS ; do
1130 DNUM=$(( $DNUM + 1 ))
1131 DRESULTS="$BASE$DNUM"
1132 done
1133 mkdir $DRESULTS
1134 RETVAL=$?
1135 if test "x$RETVAL" != x0 ; then
1136 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1137 exit 1
1138 fi
1139 SUMMARY="$DRESULTS/summary.txt"
1140 start_date=`date`
1141 echo $start_date > $SUMMARY
1142 echo 'run:' $CMDLINE >> $SUMMARY
1143 echo 'on :' $UNAMEA >> $SUMMARY
1144
1145 of_path=
1146 if test "x$OPTFILE" != xNONE ; then
1147 if test -r $OPTFILE ; then
1148 # get the path
1149 path=${OPTFILE%/*}
1150 if test "x$path" = x ; then
1151 of_path=`pwd`
1152 else
1153 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1154 fi
1155 file=${OPTFILE##*/}
1156 OPTFILE=$of_path/$file
1157 cp $OPTFILE $DRESULTS
1158 echo >> $SUMMARY
1159 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1160 else
1161 echo | tee $SUMMARY
1162 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1163 exit 1
1164 fi
1165 else
1166 echo >> $SUMMARY
1167 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1168 echo " so the genmake default will be used." >> $SUMMARY
1169 fi
1170 echo
1171 echo >> $SUMMARY
1172 if test "x$ADM" = x -a "x$OADM" = x; then
1173 if [ $MATCH_CRIT -lt 10 ] ;
1174 then line_0="default "$MATCH_CRIT ;
1175 else line_0="default "$MATCH_CRIT ; fi
1176 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1177 line_1="G D M c m s m s m s m s"
1178 line_2="E p a R g m m e . m m e . m m e . m m e ."
1179 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1180 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1181 for ii in $PTRACERS_NUM ; do
1182 line_0="$line_0 --PTR 0"$ii"--"
1183 line_1="$line_1 m s"
1184 line_2="$line_2 m m e ."
1185 line_3="$line_3 i a a d"
1186 line_4="$line_4 n x n ."
1187 done
1188 echo "$line_0" | tee -a $SUMMARY
1189 echo "$line_1" | tee -a $SUMMARY
1190 echo "$line_2" | tee -a $SUMMARY
1191 echo "$line_3" | tee -a $SUMMARY
1192 echo "$line_4" | tee -a $SUMMARY
1193 echo " " | tee -a $SUMMARY
1194 else
1195 echo "ADJOINT=true" >> $SUMMARY
1196 echo >> $SUMMARY
1197 if [ $MATCH_CRIT -lt 10 ] ;
1198 then line_0="default "$MATCH_CRIT ;
1199 else line_0="default "$MATCH_CRIT ; fi
1200 echo "$line_0" | tee -a $SUMMARY
1201 cat << EOF | tee -a $SUMMARY
1202 G D M C G
1203 E p a R o r
1204 N n k u s a
1205 2 d e n t d
1206
1207 EOF
1208 fi
1209 echo "-------------------------------------------------------------------------------"
1210
1211 # ...and each test directory...
1212 for dir in $TESTDIRS ; do
1213
1214 # set builddir & rundir:
1215 builddir="build"
1216 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1217 rundir="run"
1218 pfxdir="tr_$rundir"
1219 if test ! -d $dir/$rundir ; then
1220 rundir=$builddir
1221 fi
1222 CODE_DIR=$dir/$code_dir
1223 BUILD_DIR=$dir/$builddir
1224
1225 # Cleanup only!
1226 if test "x$CLEANUP" = xt ; then
1227 echo -n ' --- dir:' $BUILD_DIR ': '
1228 makeclean $BUILD_DIR
1229 ( cd $BUILD_DIR
1230 rm -f $EXECUTABLE *.bak
1231 rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
1232 rm -f genmake.log make.log
1233 )
1234 if test -d $dir/$rundir/CVS ; then
1235 echo -n ' --- dir:' $dir/$rundir ': '
1236 run_clean $dir/$rundir
1237 fi
1238 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1239 ttd=`echo $trdir | wc -w`
1240 if test $ttd != 0 ; then
1241 echo ' --- rm dir:' $trdir
1242 ( cd $dir ; rm -rf $trdir )
1243 fi
1244 continue
1245 fi
1246
1247 # Verify that the testdir exists and contains previous
1248 # results in the correct location--or skip this directory!
1249 fout=$dir"/results/"$ref_outp
1250 if test ! -r $fout ; then
1251 echo "can't read \"$fout\" -- skipping $dir"
1252 continue
1253 fi
1254
1255 # Check for specific files for particular type of run
1256
1257 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1258 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1259 continue
1260 fi
1261 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1262 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1263 continue
1264 fi
1265 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1266 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1267 if test $retv != 0 ; then
1268 echo "input/eedata.mth tiling misfit -- skipping $dir"
1269 continue
1270 fi
1271 fi
1272
1273 # Check whether there are "extra runs" for this testdir
1274 extra_runs=
1275 if test "x$NORUN" = xf ; then
1276 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1277 fi
1278 #echo "ex_run_dirs='$ex_run_dirs'"
1279 for exd in $ex_run_dirs ; do
1280 name=`echo $exd | sed -e "s/$inputdir\.//"`
1281 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1282 outf="$dir/results/$refExOut"
1283 if test -f $outf -a -r $outf ; then
1284 if test "x$MULTI_THREAD" = "xt" ; then
1285 if test -r $dir"/"$exd"/eedata.mth" ; then
1286 if test "x$MPI" = "xt" ; then
1287 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1288 if test $retv = 0 ; then
1289 extra_runs="$extra_runs $name"
1290 else
1291 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1292 fi
1293 else
1294 extra_runs="$extra_runs $name"
1295 fi
1296 #else echo $dir"/"$exd"/eedata.mth: not found"
1297 fi
1298 else
1299 extra_runs="$extra_runs $name"
1300 fi
1301 fi
1302 done
1303
1304 echo
1305 if test "x$extra_runs" = "x" ; then
1306 echo "Experiment: $dir"
1307 else
1308 echo "Experiment: $dir ; extra_runs=$extra_runs"
1309 fi
1310 echo
1311 unset genmake makedepend make run
1312 results=$EMPTY_RESULTS
1313
1314 # Create an output dir for each OPTFILE/tdir combination
1315 locDIR=$DRESULTS"/"$dir
1316 mkdir $locDIR
1317 CDIR=`pwd`"/$locDIR"
1318
1319 if test "x$NORUN" = xt ; then
1320 run=N
1321 genmakemodel $dir/$builddir && genmake=Y \
1322 && makeclean $dir/$builddir \
1323 && symlink_mpifiles $dir $code_dir $builddir \
1324 && makedependmodel $dir/$builddir && makedepend=Y \
1325 && makemodel $dir/$builddir && make=Y
1326 else
1327 genmakemodel $dir/$builddir && genmake=Y \
1328 && makeclean $dir/$builddir \
1329 && symlink_mpifiles $dir $code_dir $builddir \
1330 && makedependmodel $dir/$builddir && makedepend=Y \
1331 && makemodel $dir/$builddir && make=Y \
1332 && run_clean $dir/$rundir \
1333 && linkdata $dir/$rundir $inputdir \
1334 && runmodel $dir/$rundir && run=Y \
1335 && results=`testoutput_run $dir $rundir $ref_outp`
1336 fi
1337 #echo "results='$results'"
1338
1339 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1340 echo 1>&2
1341 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1342 touch $locDIR"/summary.txt"
1343 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1344 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1345 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1346 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1347 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1348 if test "x$ADM" = xt ; then
1349 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1350 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1351 >> $locDIR"/summary.txt"
1352 fi
1353
1354 for ex in $extra_runs ; do
1355 unset run
1356 results=$EMPTY_RESULTS
1357 # reference output file
1358 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1359 # Create an output dir for each OPTFILE/tdir.ex combination
1360 locDIR=$DRESULTS"/"$dir"."$ex
1361 mkdir $locDIR
1362 CDIR=`pwd`"/$locDIR"
1363 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1364 run_clean $dir/$pfxdir.$ex
1365 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1366 runmodel $dir/$pfxdir.$ex && run=Y \
1367 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1368 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1369 fres="$fres.$ex"
1370 echo 1>&2
1371 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1372 touch $locDIR"/summary.txt"
1373 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1374 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1375 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1376 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1377 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1378 if test "x$ADM" = xt ; then
1379 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1380 grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \
1381 >> $locDIR"/summary.txt"
1382 fi
1383 if test "x$POSTCLEAN" = xt ; then
1384 run_clean $dir/$pfxdir.$ex
1385 fi
1386 done
1387
1388 if test -f $DRESULTS"/"genmake_state ; then : ; else
1389 if test -f $dir/$builddir/Makefile ; then
1390 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1391 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1392 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1393 echo $mkOpt >> $DRESULTS/genmake_state
1394 fi
1395 fi
1396 #postclean $dir/$builddir
1397 if test "x$POSTCLEAN" = xt ; then
1398 makeclean $dir/$builddir \
1399 && run_clean $dir/$rundir
1400 fi
1401
1402 echo "-------------------------------------------------------------------------------"
1403
1404 done
1405
1406 printf "Start time: " >> $SUMMARY
1407 echo "$start_date" >> $SUMMARY
1408 printf "End time: " >> $SUMMARY
1409 date >> $SUMMARY
1410
1411 # If addresses were supplied and mpack built successfully, then try
1412 # to send email using mpack.
1413 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1414 echo "No results email was sent."
1415 else
1416 if test "x$HAVE_MPACK" = xt ; then
1417 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1418 && gzip $DRESULTS".tar" \
1419 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1420 RETVAL=$?
1421 if test "x$RETVAL" != x0 ; then
1422 echo
1423 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1424 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1425 echo " summary of results from the directory \"$DRESULTS\"."
1426 echo
1427 else
1428 echo
1429 echo "An email containing results was sent to the following addresses:"
1430 echo " \"$ADDRESSES\""
1431 echo
1432 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1433 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1434 fi
1435 fi
1436 fi
1437
1438 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1439 rm -f tr_cmpnum.c tr_cmpnum
1440 fi
1441
1442 if test "x$CLEANUP" != xt ; then
1443 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1444 if test -e tr_out.txt ; then
1445 mv tr_out.txt tr_out.txt.old
1446 fi
1447 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1448 fi
1449
1450 if test "x$DELDIR" = xt ; then
1451 rm -rf $DRESULTS
1452 fi

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