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Revision 1.142 - (show annotations) (download)
Thu Oct 7 20:59:39 2010 UTC (9 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint62m
Changes since 1.141: +5 -1 lines
a hack to resume testreport after it stopped (-t 'start_from $experiment')

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.141 2010/06/23 18:46:43 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
20 echo " (-optfile|-of) STRING list of optfiles to use"
21 echo " (-addr|-a) STRING list of email recipients"
22 echo " (DEF=\"\" no email is sent)"
23 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
24 echo " (DEF=\"../tools/mpack-1.6\")"
25 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
26 echo " (recognized groups: basic, tutorials)"
27 echo " (DEF=\"\" which test all)"
28 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
29 echo " (DEF=\"\" which test all)"
30 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
31 echo " Bourne-compatible \"sh\" shell"
32 echo " (DEF=\"\" for \"bash\")"
33 echo " (-adm|-ad) perform an adjoint run"
34 echo " (-oad) perform an OpenAD adjoint run"
35 echo " (-command|-c) STRING command to run"
36 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
37 echo " (-make|-m) STRING command to use for \"make\""
38 echo " (DEF=\"make\")"
39 echo " (-odir) STRING used to build output directory name"
40 echo " (DEF=\"hostname\")"
41 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
42 echo " (DEF=\"1 2 3 4 5\")"
43 echo " (-match) NUMBER Matching Criteria (number of digits)"
44 echo " (DEF=\"$MATCH_CRIT\")"
45 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
46 echo " (-clean) *ONLY* run \"make CLEAN\""
47 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
48 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
49 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
50 echo " (-nogenmake|-ng) skip the genmake stage"
51 echo " (-noclean|-nc) skip the \"make clean\" stage"
52 echo " (-nodepend|-nd) skip the \"make depend\" stage"
53 echo " (-deldir|-dd) on success, delete the output directory"
54 echo " (-ts) provide timing information per timestep"
55 echo " (-papis) provide MFlop/s per timestep using PAPI"
56 echo " (-pcls) provide MFlop/s per timestep using PCL"
57 echo
58 echo "and where STRING can be a whitespace-delimited list"
59 echo "such as:"
60 echo
61 echo " -t 'exp0 exp2 exp3' "
62 echo " -addr='abc@123.com testing@home.org'"
63 echo
64 echo "provided that the expression is properly quoted within the current"
65 echo "shell (note the use of single quotes to protect white space)."
66 echo
67 exit 1
68 }
69
70 # build the mpack utility
71 build_mpack()
72 {
73 printf "building the mpack utility... "
74 MPACK="$MPACKDIR/mpack"
75 if test ! -x $MPACK ; then
76 if test ! -d $MPACKDIR ; then
77 echo
78 echo "Error: can't find \"$MPACKDIR\""
79 echo " are you sure this program is being run in the correct "
80 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
81 echo
82 HAVE_MPACK=f
83 fi
84 if test "x$CC" = x ; then
85 export CC=cc
86 fi
87 printf "building mpack (using CC=$CC)... "
88 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
89 RETVAL=$?
90 if test "x$RETVAL" != x0 ; then
91 echo
92 echo "Error building the mpack tools at: $MPACK_DIR"
93 echo
94 HAVE_MPACK=f
95 else
96 rm -f tr_build_mpack.out
97 HAVE_MPACK=t
98 echo "done"
99 fi
100 else
101 HAVE_MPACK=t
102 echo "already exist"
103 fi
104 }
105
106 testoutput_var()
107 {
108 # testoutput_var dir s1 label subdir reference_output
109 #
110 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
111 # with same output from reference file $dir/results/$reference_output
112 # using search strings s1 and text label
113
114 if [ $debug -gt 0 ]; then
115 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
116 fi
117 if [ -r $1/$4/$OUTPUTFILE ]; then
118 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
119 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
120 if [ $lncntA -lt 2 ]; then
121 if [ $verbose -gt 0 ]; then
122 echo Not enough lines of output when searching for "$2" 1>&2
123 fi
124 return 99
125 fi
126 else
127 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
128 return 99
129 fi
130 if [ $debug -gt 0 ]; then
131 echo testoutput_var: grep "$2" $1/results/$5 1>&2
132 fi
133 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
134 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
135 if [ $lncntB -lt 2 ]; then
136 if [ $verbose -gt 0 ]; then
137 echo Not enough lines of output when searching for "$2" 1>&2
138 fi
139 return 99
140 fi
141 if [ $lncntA -ne $lncntB ]; then
142 if [ $verbose -gt 0 ]; then
143 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
144 fi
145 return 99
146 fi
147 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
148 if [ $has_nan -gt 0 ] ; then
149 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
150 return 99
151 fi
152 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
153 if [ $has_inf -gt 0 ] ; then
154 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
155 return 99
156 fi
157 if [ $debug -gt 0 ]; then
158 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
159 fi
160 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
161 if [ $debug -gt 0 ]; then
162 echo testoutput_var: compare_lines 1>&2
163 fi
164 if [ $verbose -gt 1 ]; then
165 cat tmp3.txt 1>&2
166 fi
167 echo "-1" >> tmp3.txt
168 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
169 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
170 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
171 if [ $digits_of_similarity -eq 99 ]; then
172 if [ $verbose -gt 0 ]; then
173 echo testoutput_var: No comparison was available for \"$3\" 1>&2
174 fi
175 digits_of_similarity=99
176 else
177 if [ $verbose -gt 0 ]; then
178 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
179 fi
180 fi
181 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
182
183 return $digits_of_similarity
184 }
185
186 testoutput_run()
187 {
188 # testoutput_run directory subdir reference_output
189 #
190 # test output from 1 run in "directory"
191 # --> same processing for adjoint & forward test
192 # default list of output variables to be checked:
193 # 1rst : main variable used to decide if it pass or FAIL
194 # others : number of matching digits to be printed in summary.txt
195 listChk=$DEF_CHECK_LIST
196 # load experiment-specific list from file "tr_checklist" (if it exist)
197 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
198 sVar=`echo $listChk | awk '{print $1}'`
199 # remove 1rst var and expand the list: + => min max mean s.d
200 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
201 | sed 's/+//g' | sed "s/^$sVar//"`
202 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
203 # check for ptracer output in reference_output file :
204 outpref=$1/results/$3
205 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
206 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
207 for ii in $PTRACERS_NUM ; do
208 ptrfound=0
209 for jj in $ptr_mon ; do
210 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
211 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
212 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
213 done
214 if test $ptrfound = '1' ; then
215 eval "HAVE_PTR0"$ii"=t"
216 else
217 eval "HAVE_PTR0"$ii"=f"
218 if test "x$ADM" = x -a "x$OADM" = x; then
219 # remove this ptr from the list of output variable to check
220 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
221 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
222 fi
223 fi
224 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
225 done
226 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
227 if test $tst != 1 ; then
228 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
229 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
230 echo "==> WARNING: in checked list:" $listVar 1>&2
231 #- put it back once:
232 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
233 fi
234 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
235 echo "listVar='$listVar'" > $locDIR"/summary.txt"
236 allargs=""
237 for xx in $listVar
238 do
239 case $xx in
240 'PS') if [ $debug -gt 0 ]
241 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
242 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
243 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
244 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
245 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
246 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
247 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
248 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
249 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
250 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
251 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
252 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
253 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
254 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
255 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
256 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
257 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
258 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
259 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
260 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
261 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
262 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
263 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
264 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
265 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
266 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
267 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
268 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
269 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
270 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
271 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
272 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
273 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
274 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
275 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
276 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
277 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
278 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
279 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
280 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
281 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
282 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
283 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
284 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
285 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
286 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
287 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
288 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
289 esac
290 if test $xx = $sVar
291 then allargs="$allargs > $yy <"
292 else allargs="$allargs $yy"
293 fi
294 done
295
296 nbVar=`echo $listVar | awk '{print NF}'`
297 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
298 #-- fill line (up to standard length) with dot:
299 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
300 echo $allargs $adNul
301 else
302 echo $allargs
303 fi
304 # <-- same processing for adjoint & forward test
305 }
306
307 genmakemodel()
308 {
309 # genmakemodel directory
310 if test "x$NOGENMAKE" = xt ; then
311 echo "genmake skipped!"
312 else
313 if test "x$BASH" = x ; then
314 GENMAKE2="../../../tools/genmake2"
315 else
316 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
317 fi
318 (
319 cd $1;
320 command="$GENMAKE2 -ds -m $MAKE"
321 if test "x$MKDEPEND" != x ; then
322 command="$command -makedepend=$MKDEPEND"
323 fi
324 if test "x$ADM" = xt ; then
325 command="$command --mods=../code_ad"
326 elif test "x$OADM" = xt ; then
327 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
328 else
329 command="$command -mods=../code"
330 fi
331 if test "x$OPTFILE" != xNONE ; then
332 command="$command -optfile=$OPTFILE"
333 fi
334 if test "x$IEEE" != x ; then
335 command="$command -ieee"
336 fi
337 if test "x$GSL" = xt ; then
338 command="$command -gsl"
339 fi
340 if test "x$MPI" = xt ; then
341 command="$command -mpi"
342 fi
343 if test "x$MULTI_THREAD" = xt ; then
344 #- run multi-threaded using OpenMP:
345 command="$command -omp"
346 fi
347 if test "x$USE_R4" = xt ; then
348 command="$command -use_r4"
349 fi
350 if test "x$TS" = xt ; then
351 command="$command -ts"
352 fi
353 if test "x$PAPIS" = xt ; then
354 command="$command -papis"
355 else
356 if test "x$PCLS" = xt ; then
357 command="$command -pcls"
358 fi
359 fi
360 printf 'genmake ... '
361 eval $command > make.log 2>&1
362 RETVAL=$?
363 # Reduce the size of the testing emails!
364 head -100 Makefile > $CDIR/Makefile_head
365 if test "x$RETVAL" != x0 ; then
366 tail make.log
367 echo "genmakemodel: genmake failed"
368 cp genmake_* make.log $CDIR
369 return 1
370 else
371 echo "successful"
372 fi
373 )
374 fi
375 }
376
377 makeclean()
378 {
379 # makeclean directory
380 if test "x$NOCLEAN" = xt ; then
381 echo "make Clean skipped!"
382 else
383 (
384 cd $1;
385 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
386 if test -r Makefile ; then
387 printf 'clean build-dir: make Clean ... '
388 $MAKE Clean >> make.log 2>&1
389 RETVAL=$?
390 if test "x$RETVAL" != x0 ; then
391 tail make.log
392 echo "makeclean: \"make Clean\" failed"
393 cp make.log $CDIR"/make.log"
394 return 1
395 fi
396 echo successful
397 else
398 echo ''
399 fi
400 exit 0
401 )
402 fi
403 }
404
405 run_clean()
406 {
407 # run_clean directory
408 if test "x$NOCLEAN" = xt ; then
409 echo "run_clean skipped!"
410 else
411 (
412 cd $1;
413 printf 'clean run-dir ... '
414 # part of what is done after "make clean" when doing "make CLEAN"
415 find . -name "*.meta" -exec rm {} \;
416 find . -name "*.data" -exec rm {} \;
417 find . -name "fort.*" -exec rm {} \;
418 find . -type l -exec rm {} \;
419 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
420 rm -rf mnc_test_*
421 rm -f *_MIT_CE_000.opt0000 costfunction*0000
422 echo successful
423 exit 0
424 )
425 fi
426 }
427
428 makedependmodel()
429 {
430 # makedependmodel directory
431 if test "x$NODEPEND" = xt ; then
432 echo "make depend skipped!"
433 else
434 (
435 cd $1;
436 printf 'make depend ... '
437 $MAKE depend >> make.log 2>&1
438 RETVAL=$?
439 if test "x$RETVAL" != x0 ; then
440 tail make.log
441 echo "makedependmodel: make depend failed"
442 cp make.log $CDIR"/make.log"
443 return 1
444 else
445 echo successful
446 fi
447 )
448 fi
449 }
450
451 makemodel()
452 {
453 # makemodel directory
454 (
455 if test "x$NOMAKE" = xt ; then
456 cd $1;
457 if test -x $EXECUTABLE ; then
458 echo "make skipped!"
459 else
460 echo "no executable!"
461 return 2
462 fi
463 else
464 cd $1;
465 if test -r Makefile ; then
466 printf 'make ... '
467 if test "x$ADM" = xt ; then
468 $MAKE adall >> make.log 2>&1
469 elif test "x$OADM" = xt ; then
470 $MAKE adAll >> make.log 2>&1
471 else
472 if test "x$JOBS" = x ; then
473 $MAKE >> make.log 2>&1
474 else
475 $MAKE -j $JOBS >> make.log 2>&1
476 fi
477 fi
478 RETVAL=$?
479 if test "x$RETVAL" != x0 ; then
480 tail make.log
481 echo failed
482 cp make.log $CDIR"/make.log"
483 rm -f $EXECUTABLE
484 return 1
485 else
486 echo successful
487 fi
488 fi
489 fi
490 )
491 }
492
493 symlink_mpifiles()
494 {
495 # Put special links so that MPI specific files are used
496 # This MUST be invoked between makeclean and makelinks because
497 # the Makefile will link to non-mpi files by default
498
499 dir=$1
500 code_dir=$2
501 BUILD_DIR=$dir/$3
502 CODE_DIR=$dir/$code_dir
503
504 # These are files that should replace their counter-part when using -mpi
505 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
506
507 # Is this an MPI run?
508 if test "x$MPI" = xt ; then
509 # YES: We symbolically link these files to the build
510 # dir so long as there is no real file in place
511 for ii in $MPI_FILES ; do
512 i=`echo $ii | sed 's:^\./::'`
513 name=`echo $i | sed 's:_mpi::' `
514 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
515 RETVAL=$?
516 if test "x$RETVAL" != x0 ; then
517 if ! test -f $BUILD_DIR/$i ; then
518 #echo Linking $name to $i
519 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
520 fi
521 fi
522 done
523 else
524 # NO: We undo any _mpi symbolically linked files
525 for ii in $MPI_FILES ; do
526 i=`echo $ii | sed 's:^\./::'`
527 name=`echo $i | sed 's:_mpi::' `
528 if test -L $BUILD_DIR/$name ; then
529 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
530 RETVAL=$?
531 if test "x$RETVAL" = x0 ; then
532 #echo Un-linking $name from $linktarg
533 rm -f $BUILD_DIR/$name
534 fi
535 fi
536 done
537 fi
538
539 }
540
541 linkdata()
542 {
543 # linkdata run_dir input_dir_1 input_dir_2 ...
544 #
545 # symbolically link data files to run directory
546 if test -d $1 ; then
547 (
548 cd $1 ; shift
549 echo 'linkdata from dirs:' $*
550 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
551 for xx in $inpMPI ; do
552 if test -r "../"$1"/"$xx ; then
553 # found 1 _mpi sfx file in 1rst input dir and it is readable
554 yy=`echo $xx | sed 's:\.mpi$::'`
555 if test "x$MPI" = "xt" ; then
556 # mpi test: remove symbolic link & link _mpi sfx file
557 if test -h $yy ; then rm -f $yy ; fi
558 if test ! -r $yy ; then
559 ln -sf "../"$1"/"$xx $yy ;
560 printf " $xx" 1>&2
561 fi
562 else
563 # not mpi test: remove symbolic link
564 if test -h $yy ; then rm -f $yy ; fi
565 fi
566 fi
567 done
568 if test -r "../"$1"/eedata.mth" ; then
569 # found eedata.mth in 1rst input dir and it is readable
570 if test "x$MULTI_THREAD" = "xt" ; then
571 # multi-threaded test: remove symbolic link & link eedata.mth
572 if test -h eedata ; then rm -f eedata ; fi
573 if test ! -r eedata ; then
574 ln -sf "../"$1"/eedata.mth" eedata ;
575 printf ' eedata.mth' 1>&2
576 fi
577 else
578 # not multi-threaded test: remove eedata symbolic link
579 if test -h eedata ; then rm -f eedata ; fi
580 fi
581 fi
582 prevDir='NONE'
583 for ldir in $* ; do
584 if test -d "../"$ldir -a $ldir != $prevDir ; then
585 printf " ldir=${ldir}:" 1>&2
586 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
587 for i in $files ; do
588 if test ! -d "../"$ldir/$i ; then
589 if test ! -r $i ; then
590 printf ' '$i 1>&2
591 ln -sf "../"$ldir"/"$i $i
592 fi
593 fi
594 done
595 printf ' ;' 1>&2
596 if test -x "../"$ldir"/"prepare_run ; then
597 "../"$ldir"/"prepare_run 1>&2
598 else
599 echo '' 1>&2
600 fi
601 fi
602 prevDir=$ldir
603 done
604 )
605 fi
606 }
607
608 runmodel()
609 {
610 # runmodel directory
611 #
612 # runs "$COMMAND in "directory"
613 # (where "$COMMAND" is relative to "directory")
614 (
615 cd $1
616 printf 'runmodel in %s ... ' $1
617 if test -L $EXECUTABLE ; then
618 if test -x "../"$builddir"/"$EXECUTABLE ; then
619 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
620 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
621 else rm -f $EXECUTABLE
622 fi
623 fi
624 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
625 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
626 ln -sf "../"$builddir"/"$EXECUTABLE .
627 fi
628 if test ! -x $EXECUTABLE ; then
629 rm -f $RUNLOG ; touch $RUNLOG
630 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
631 echo " no executable:" $EXECUTABLE >> $RUNLOG
632 RETVAL=8
633 ENDVAL=-1
634 else
635 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
636 # output do not exist or is older than executable:
637 rm -f $RUNLOG ; touch $RUNLOG
638 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
639 ( eval $COMMAND ) >> $RUNLOG 2>&1
640 RETVAL=$?
641 else
642 RETVAL=0
643 if test -f $RUNLOG ; then
644 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
645 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
646 else
647 touch $RUNLOG
648 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
649 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
650 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
651 fi
652 fi
653 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
654 fi
655 rm -f run.log_tmp
656 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
657 echo successful
658 printf '=> output from running in %s :\n' $1 1>&2
659 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
660 # === Reduce the size of the testing emails!
661 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
662 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
663 return 0
664 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
665 #-- for some weird cases (run is finihed but with error code)
666 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
667 printf '=> output from running in %s :\n' $1 1>&2
668 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
669 return 0
670 else
671 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
672 printf '=> output from running in %s :\n' $1 1>&2
673 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
674 cp $RUNLOG $CDIR"/"$RUNLOG
675 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
676 return 1
677 fi
678 )
679 }
680
681 createcodelet()
682 {
683 # create codelet for comparing model output
684
685 printf "creating the comparison code (using CC=$CC)... "
686 cat > tr_cmpnum.c <<EOF
687 #include <stdio.h>
688 #include <math.h>
689 int main( int argc, char** argv ) {
690 int linnum,cmplin,best,lncnt;
691 double a,b,abave,relerr;
692 best = -22;
693 lncnt = 0;
694 while( 1 & ( (lncnt+=1) < 999 ) ) {
695 scanf("%d", &linnum);
696 if (linnum == -1) break;
697 scanf("%lf", &a); scanf("%lf", &b);
698 abave = 0.5*(fabs(a)+fabs(b));
699 if ( abave == abave ) {
700 if (abave > 0.0) {
701 relerr=fabs(a-b)/abave;
702 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
703 else { cmplin = -16 ; }
704 best = (best > cmplin) ? best : cmplin; }
705 else { cmplin = -22 ; }
706 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
707 }
708 else {
709 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
710 break; }
711 }
712 if (lncnt == 999) best=-29;
713 if (linnum != -1) best=-99;
714 printf("%d\n", -best);
715 return 0;
716 }
717 EOF
718 $CC -o tr_cmpnum tr_cmpnum.c -lm
719
720 if [ -x ./tr_cmpnum ]; then
721 echo "OK"
722 return 0
723 else
724 echo
725 echo "ERROR: failed to compile comparison code -- please specify"
726 echo " a C compiler using the CC environment variable."
727 exit 1
728 fi
729 }
730
731 formatresults()
732 {
733 # formatresults expt genmake depend make run results*
734
735 nm=$1
736 printf '%s %s %s %s' $2 $3 $4 $5
737 shift; shift; shift; shift; shift;
738 listPrt=$@
739 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
740 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
741 printf '%3s' $listPrt
742 # line below does not work on hp-ux_ia64 : do those substitutions later on
743 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
744
745 if [ $xx = '..' ]; then
746 printf ' N/O '
747 elif [ $xx = '--' ]; then
748 printf ' N/O '
749 elif [ $xx = 99 ]; then
750 printf ' N/O '
751 else
752 if [ $xx -ge $MATCH_CRIT ]; then
753 printf ' pass'
754 else
755 printf ' FAIL'
756 fi
757 fi
758 printf ' %s' $nm
759 printf '\n'
760
761 }
762
763 scandirs()
764 {
765 if [ $# -eq 1 ]; then
766 for arg in * ; do
767 test -f $arg/$1 && echo $arg
768 done
769 else
770 echo $*
771 fi
772 }
773
774
775 check_eedata()
776 {
777 # check_eedata size.h eedata
778 if [ $# -eq 2 ] ; then
779 if test -f $1 -a -f $2 ; then
780 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
781 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
782 if test "x$nx" = x ; then
783 rx=10
784 else
785 rx=`expr $sx % $nx`
786 fi
787 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
788 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
789 if test "x$ny" = x ; then
790 ry=20
791 else
792 ry=`expr $sy % $ny`
793 fi
794 echo `expr $rx + $ry`
795 else
796 echo '-1'
797 fi
798 else
799 echo '-2'
800 fi
801
802 }
803
804 ###############################################################################
805
806
807 # Default properties
808 debug=0
809 verbose=1
810 clean=0
811
812 IEEE=true
813 if test "x$MITGCM_IEEE" != x ; then
814 IEEE=$MITGCM_IEEE
815 fi
816 GSL=f
817
818 CLEANUP=f
819 NORUN=f
820 QUICK=f
821 NOMAKE=f
822 NOGENMAKE=f
823 NOCLEAN=f
824 NODEPEND=f
825 POSTCLEAN=f
826
827 BASH=
828 OPTFILE=NONE
829 ADDRESSES=
830 TESTDIRS=
831 SKIPDIRS=
832 MPACKDIR="../tools/mpack-1.6"
833 HAVE_MPACK=
834 MPACK=
835 COMMAND=
836 MKDEPEND=
837 if test "x$MAKE" = x ; then
838 MAKE=make
839 fi
840 if test "x$CC" = x ; then
841 CC=cc
842 fi
843 JOBS=
844 MPI=f
845 MULTI_THREAD=f
846 OUTDIR=
847 DELDIR=
848 USE_R4=
849
850 ADM=
851 OADM=
852
853 # list of pTracers to check for monitor output
854 PTRACERS_NUM="1 2 3 4 5"
855
856 MATCH_CRIT=13
857
858 printf "parsing options... "
859
860 ac_prev=
861 for ac_option ; do
862
863 # If the previous option needs an argument, assign it.
864 if test -n "$ac_prev"; then
865 eval "$ac_prev=\$ac_option"
866 ac_prev=
867 continue
868 fi
869
870 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
871
872 case $ac_option in
873
874 -help | --help | -h | --h)
875 usage ;;
876
877 -optfile | --optfile | -of | --of)
878 ac_prev=OPTFILE ;;
879 -optfile=* | --optfile=* | -of=* | --of=*)
880 OPTFILE=$ac_optarg ;;
881
882 -addr | --addr | -a | --a)
883 ac_prev=ADDRESSES ;;
884 -addr=* | --addr=* | -a=* | --a=*)
885 ADDRESSES=$ac_optarg ;;
886 -mpackdir | --mpackdir | -mpd | --mpd)
887 ac_prev=MPACKDIR ;;
888 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
889 MPACKDIR=$ac_optarg ;;
890
891 -tdir | --tdir | -t | --t)
892 ac_prev=TESTDIRS ;;
893 -tdir=* | --tdir=* | -t=* | --t=*)
894 TESTDIRS=$ac_optarg ;;
895
896 -skipdir | --skipdir | -skd | --skd)
897 ac_prev=SKIPDIRS ;;
898 -skipdir=* | --skipdir=* | -skd=* | --skd=*)
899 SKIPDIRS=$ac_optarg ;;
900
901 -bash | --bash | -b | --b)
902 ac_prev=BASH ;;
903 -bash=* | --bash=* | -b=* | --b=*)
904 BASH=$ac_optarg ;;
905
906 -command | --command | -c | --c)
907 ac_prev=COMMAND ;;
908 -command=* | --command=* | -c=* | --c=*)
909 COMMAND=$ac_optarg ;;
910
911 -makedepend | --makedepend | -md | --md)
912 ac_prev=MKDEPEND ;;
913 -makedepend=* | --makedepend=* | -md=* | --md=*)
914 MKDEPEND=$ac_optarg ;;
915
916 -make | --make | -m | --m)
917 ac_prev=MAKE ;;
918 -make=* | --make=* | -m=* | --m=*)
919 MAKE=$ac_optarg ;;
920
921 -odir | --odir)
922 ac_prev=OUTDIR ;;
923 -odir=* | --odir=*)
924 OUTDIR=$ac_optarg ;;
925
926 -ptracers | --ptracers | -ptr | --ptr)
927 ac_prev=PTRACERS_NUM ;;
928 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
929 PTRACERS_NUM=$ac_optarg ;;
930
931 -match | --match ) ac_prev=MATCH_CRIT ;;
932 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
933
934 -j | --j) ac_prev=JOBS ;;
935 -j=* | --j=*) JOBS=$ac_optarg ;;
936
937 -clean | --clean)
938 CLEANUP=t ; DELDIR=t ;;
939
940 -norun | --norun | -nr | --nr)
941 NORUN=t ;;
942 -runonly | --runonly | -ro | --ro)
943 QUICK=t ; NOMAKE=t ;;
944 -quick | --quick | -q | --q)
945 QUICK=t ;;
946 -nogenmake | --nogenmake | -ng | --ng)
947 NOGENMAKE=t ;;
948 -noclean | --noclean | -nc | --nc)
949 NOCLEAN=t ;;
950 -nodepend | --nodepend | -nd | --nd)
951 NODEPEND=t ;;
952
953 -postclean | --postclean | -pc | --pc)
954 POSTCLEAN=t ;;
955
956 -mpi) MPI=t ;;
957
958 -mth) MULTI_THREAD=t ;;
959
960 -adm | -ad) ADM=t ;;
961
962 -oad) OADM=t; NODEPEND=t ;;
963
964 -ieee) IEEE=true ;;
965 -noieee) IEEE= ;;
966 -gsl) GSL=t ;;
967
968 -verbose) verbose=2 ;;
969 -debug) debug=1 ;;
970 -quiet) verbose=0 ;;
971
972 -deldir | -dd) DELDIR=t ;;
973
974 -use_r4|-ur4) USE_R4=t ;;
975
976 -ts) TS=t;;
977 -papis) PAPIS=t;;
978 -pcls) PCL=t;;
979
980 -*)
981 echo "Error: unrecognized option: "$ac_option
982 usage
983 ;;
984
985 *)
986 echo "Error: unrecognized argument: "$ac_option
987 usage
988 ;;
989
990 esac
991
992 done
993
994 if test "x$QUICK" = xt ; then
995 NOGENMAKE=t
996 NOCLEAN=t
997 NODEPEND=t
998 fi
999
1000 #- setting for forward or ADM testing
1001 if test "x$ADM" = xt ; then
1002 code_dir=code_ad
1003 inputdir=input_ad
1004 ref_outp="output_adm.txt"
1005 EXECUTABLE="mitgcmuv_ad"
1006 elif test "x$OADM" = xt ; then
1007 code_dir=code_oad
1008 inputdir=input_oad
1009 ref_outp="output_oadm.txt"
1010 EXECUTABLE="mitgcmuv_ad"
1011 else
1012 code_dir=code
1013 inputdir=input
1014 ref_outp="output.txt"
1015 EXECUTABLE="mitgcmuv"
1016 fi
1017
1018 xx=`echo $TESTDIRS | awk '{print $1}'`
1019 if test "x$TESTDIRS" = x ; then
1020 LIST=`scandirs results/$ref_outp`
1021 elif test $xx = 'start_from' ; then
1022 xx=`echo $TESTDIRS | awk '{print $2}'`
1023 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1024 else
1025 #- expand group of experiments:
1026 LIST=" "
1027 for xx in $TESTDIRS
1028 do
1029 case $xx in
1030 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1031 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1032 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1033 ;;
1034 'tutorials')
1035 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1036 *) LIST=${LIST}" "$xx ;;
1037 esac
1038 done
1039 fi
1040 #echo 'LIST='${LIST}'<'
1041 #- skip dirs, remove duplicate and non-directory:
1042 TESTDIRS=" "
1043 count=0
1044 for xx in $LIST
1045 do
1046 yy=`echo $SKIPDIRS | grep -c $xx`
1047 if test $yy = 0 ; then
1048 if test -d $xx ; then
1049 yy=`echo $TESTDIRS | grep -c $xx`
1050 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1051 else count=1 ;
1052 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1053 fi
1054 else
1055 if test $count = 1 ; then echo -n ", \"$xx\""
1056 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1057 fi
1058 fi
1059 done
1060 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1061 #echo 'TESTDIRS='${TESTDIRS}'<'
1062
1063 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1064 OPTFILE=$MITGCM_OF
1065 fi
1066
1067 RUNLOG="run.log"
1068 OUTPUTFILE=$ref_outp
1069 if test "x$COMMAND" = x ; then
1070 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1071 fi
1072 if test "x$MPI" = xt ; then
1073 OUTPUTFILE="STDOUT.0000"
1074 fi
1075
1076 echo "OK (COMMAND= $COMMAND )"
1077
1078 # set the Default List of output variables to be checked:
1079 # (use default or load experiment-specific list from file "tr_checklist")
1080 # content : 1rst = main variable used to decide if it pass or FAIL
1081 # others = number of matching digits to be printed in summary.txt
1082 if test "x$ADM" = x -a "x$OADM" = x; then
1083 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1084 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1085 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1086 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1087 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1088 else
1089 DEF_CHECK_LIST='Grad Cost Grad'
1090 EMPTY_RESULTS='.. ..'
1091 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1092 fi
1093
1094 # create the FORTRAN comparison code
1095 if test -x tr_cmpnum ; then
1096 echo "skipping comparison code build"
1097 else
1098 createcodelet
1099 fi
1100
1101 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1102 if test "x$ADDRESSES" = x ; then
1103 echo "skipping mpack build"
1104 else
1105 build_mpack
1106 fi
1107
1108 # Create a uniquely named directory to store results
1109 CMDLINE=$0
1110 for xx in "$@" ; do nw=`echo $xx | wc -w`
1111 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1112 else CMDLINE="$CMDLINE '$xx'" ; fi
1113 done
1114 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1115 MACH=`hostname`
1116 UNAMEA=`uname -a`
1117 DATE=`date +%Y%m%d`
1118 BASE="tr_"$MACH"_"$DATE"_"
1119 if test "x$OUTDIR" != x ; then
1120 BASE="tr_"$OUTDIR"_"$DATE"_"
1121 else
1122 short_name=`hostname | sed 's/\..*$//'`
1123 BASE="tr_"$short_name"_"$DATE"_"
1124 fi
1125 DNUM=0
1126 DRESULTS="$BASE$DNUM"
1127 while test -e $DRESULTS ; do
1128 DNUM=$(( $DNUM + 1 ))
1129 DRESULTS="$BASE$DNUM"
1130 done
1131 mkdir $DRESULTS
1132 RETVAL=$?
1133 if test "x$RETVAL" != x0 ; then
1134 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1135 exit 1
1136 fi
1137 SUMMARY="$DRESULTS/summary.txt"
1138 start_date=`date`
1139 echo $start_date > $SUMMARY
1140 echo 'run:' $CMDLINE >> $SUMMARY
1141 echo 'on :' $UNAMEA >> $SUMMARY
1142
1143 of_path=
1144 if test "x$OPTFILE" != xNONE ; then
1145 if test -r $OPTFILE ; then
1146 # get the path
1147 path=${OPTFILE%/*}
1148 if test "x$path" = x ; then
1149 of_path=`pwd`
1150 else
1151 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1152 fi
1153 file=${OPTFILE##*/}
1154 OPTFILE=$of_path/$file
1155 cp $OPTFILE $DRESULTS
1156 echo >> $SUMMARY
1157 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1158 else
1159 echo | tee $SUMMARY
1160 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1161 exit 1
1162 fi
1163 else
1164 echo >> $SUMMARY
1165 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1166 echo " so the genmake default will be used." >> $SUMMARY
1167 fi
1168 echo
1169 echo >> $SUMMARY
1170 if test "x$ADM" = x -a "x$OADM" = x; then
1171 if [ $MATCH_CRIT -lt 10 ] ;
1172 then line_0="default "$MATCH_CRIT ;
1173 else line_0="default "$MATCH_CRIT ; fi
1174 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1175 line_1="G D M c m s m s m s m s"
1176 line_2="E p a R g m m e . m m e . m m e . m m e ."
1177 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1178 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1179 for ii in $PTRACERS_NUM ; do
1180 line_0="$line_0 --PTR 0"$ii"--"
1181 line_1="$line_1 m s"
1182 line_2="$line_2 m m e ."
1183 line_3="$line_3 i a a d"
1184 line_4="$line_4 n x n ."
1185 done
1186 echo "$line_0" | tee -a $SUMMARY
1187 echo "$line_1" | tee -a $SUMMARY
1188 echo "$line_2" | tee -a $SUMMARY
1189 echo "$line_3" | tee -a $SUMMARY
1190 echo "$line_4" | tee -a $SUMMARY
1191 echo " " | tee -a $SUMMARY
1192 else
1193 echo "ADJOINT=true" >> $SUMMARY
1194 echo >> $SUMMARY
1195 if [ $MATCH_CRIT -lt 10 ] ;
1196 then line_0="default "$MATCH_CRIT ;
1197 else line_0="default "$MATCH_CRIT ; fi
1198 echo "$line_0" | tee -a $SUMMARY
1199 cat << EOF | tee -a $SUMMARY
1200 G D M C G
1201 E p a R o r
1202 N n k u s a
1203 2 d e n t d
1204
1205 EOF
1206 fi
1207 echo "-------------------------------------------------------------------------------"
1208
1209 # ...and each test directory...
1210 for dir in $TESTDIRS ; do
1211
1212 # set builddir & rundir:
1213 builddir="build"
1214 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1215 rundir="run"
1216 if test ! -d $dir/$rundir ; then
1217 rundir=$builddir
1218 fi
1219 CODE_DIR=$dir/$code_dir
1220 BUILD_DIR=$dir/$builddir
1221
1222 # Cleanup only!
1223 if test "x$CLEANUP" = xt ; then
1224 echo -n ' --- dir:' $BUILD_DIR ': '
1225 makeclean $BUILD_DIR
1226 rm -f $BUILD_DIR/$EXECUTABLE
1227 if test -d $dir/$rundir/CVS ; then
1228 echo -n ' --- dir:' $dir/$rundir ': '
1229 run_clean $dir/$rundir
1230 fi
1231 trdir=`( cd $dir ; find . -type d -name "tr_run.*" -print | sed 's/^.\///')`
1232 ttd=`echo $trdir | wc -w`
1233 if test $ttd != 0 ; then
1234 echo ' --- rm dir:' $trdir
1235 ( cd $dir ; rm -rf $trdir )
1236 fi
1237 continue
1238 fi
1239
1240 # Verify that the testdir exists and contains previous
1241 # results in the correct location--or skip this directory!
1242 fout=$dir"/results/"$ref_outp
1243 if test ! -r $fout ; then
1244 echo "can't read \"$fout\" -- skipping $dir"
1245 continue
1246 fi
1247
1248 # Check for specific files for particular type of run
1249
1250 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1251 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1252 continue
1253 fi
1254 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1255 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1256 continue
1257 fi
1258 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1259 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1260 if test $retv != 0 ; then
1261 echo "input/eedata.mth tiling misfit -- skipping $dir"
1262 continue
1263 fi
1264 fi
1265
1266 # Check whether there are "extra runs" for this testdir
1267 extra_runs=
1268 if test "x$NORUN" = xf ; then
1269 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1270 fi
1271 #echo "ex_run_dirs='$ex_run_dirs'"
1272 for exd in $ex_run_dirs ; do
1273 name=`echo $exd | sed -e "s/$inputdir\.//"`
1274 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1275 outf="$dir/results/$refExOut"
1276 if test -f $outf -a -r $outf ; then
1277 if test "x$MULTI_THREAD" = "xt" ; then
1278 if test -r $dir"/"$exd"/eedata.mth" ; then
1279 if test "x$MPI" = "xt" ; then
1280 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1281 if test $retv = 0 ; then
1282 extra_runs="$extra_runs $name"
1283 else
1284 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1285 fi
1286 else
1287 extra_runs="$extra_runs $name"
1288 fi
1289 #else echo $dir"/"$exd"/eedata.mth: not found"
1290 fi
1291 else
1292 extra_runs="$extra_runs $name"
1293 fi
1294 fi
1295 done
1296
1297 echo
1298 if test "x$extra_runs" = "x" ; then
1299 echo "Experiment: $dir"
1300 else
1301 echo "Experiment: $dir ; extra_runs=$extra_runs"
1302 fi
1303 echo
1304 unset genmake makedepend make run
1305 results=$EMPTY_RESULTS
1306
1307 # Create an output dir for each OPTFILE/tdir combination
1308 locDIR=$DRESULTS"/"$dir
1309 mkdir $locDIR
1310 CDIR=`pwd`"/$locDIR"
1311
1312 if test "x$NORUN" = xt ; then
1313 run=N
1314 genmakemodel $dir/$builddir && genmake=Y \
1315 && makeclean $dir/$builddir \
1316 && symlink_mpifiles $dir $code_dir $builddir \
1317 && makedependmodel $dir/$builddir && makedepend=Y \
1318 && makemodel $dir/$builddir && make=Y
1319 else
1320 genmakemodel $dir/$builddir && genmake=Y \
1321 && makeclean $dir/$builddir \
1322 && symlink_mpifiles $dir $code_dir $builddir \
1323 && makedependmodel $dir/$builddir && makedepend=Y \
1324 && makemodel $dir/$builddir && make=Y \
1325 && run_clean $dir/$rundir \
1326 && linkdata $dir/$rundir $inputdir \
1327 && runmodel $dir/$rundir && run=Y \
1328 && results=`testoutput_run $dir $rundir $ref_outp`
1329 fi
1330 #echo "results='$results'"
1331
1332 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1333 echo 1>&2
1334 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1335 touch $locDIR"/summary.txt"
1336 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1337 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1338 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1339 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1340 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1341 if test "x$ADM" = xt ; then
1342 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1343 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1344 >> $locDIR"/summary.txt"
1345 fi
1346
1347 for ex in $extra_runs ; do
1348 unset run
1349 results=$EMPTY_RESULTS
1350 # reference output file
1351 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1352 # Create an output dir for each OPTFILE/tdir.ex combination
1353 locDIR=$DRESULTS"/"$dir"."$ex
1354 mkdir $locDIR
1355 CDIR=`pwd`"/$locDIR"
1356 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1357 run_clean $dir/tr_run.$ex
1358 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir
1359 runmodel $dir/tr_run.$ex && run=Y \
1360 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1361 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1362 fres="$fres.$ex"
1363 echo 1>&2
1364 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1365 touch $locDIR"/summary.txt"
1366 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1367 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1368 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1369 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1370 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1371 if test "x$ADM" = xt ; then
1372 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1373 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1374 >> $locDIR"/summary.txt"
1375 fi
1376 if test "x$POSTCLEAN" = xt ; then
1377 run_clean $dir/tr_run.$ex
1378 fi
1379 done
1380
1381 if test -f $DRESULTS"/"genmake_state ; then : ; else
1382 if test -f $dir/$builddir/Makefile ; then
1383 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1384 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1385 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1386 echo $mkOpt >> $DRESULTS/genmake_state
1387 fi
1388 fi
1389 #postclean $dir/$builddir
1390 if test "x$POSTCLEAN" = xt ; then
1391 makeclean $dir/$builddir \
1392 && run_clean $dir/$rundir
1393 fi
1394
1395 echo "-------------------------------------------------------------------------------"
1396
1397 done
1398
1399 printf "Start time: " >> $SUMMARY
1400 echo "$start_date" >> $SUMMARY
1401 printf "End time: " >> $SUMMARY
1402 date >> $SUMMARY
1403
1404 # If addresses were supplied and mpack built successfully, then try
1405 # to send email using mpack.
1406 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1407 echo "No results email was sent."
1408 else
1409 if test "x$HAVE_MPACK" = xt ; then
1410 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1411 && gzip $DRESULTS".tar" \
1412 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1413 RETVAL=$?
1414 if test "x$RETVAL" != x0 ; then
1415 echo
1416 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1417 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1418 echo " summary of results from the directory \"$DRESULTS\"."
1419 echo
1420 else
1421 echo
1422 echo "An email containing results was sent to the following addresses:"
1423 echo " \"$ADDRESSES\""
1424 echo
1425 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1426 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1427 fi
1428 fi
1429 fi
1430
1431 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1432 rm -f tr_cmpnum.c tr_cmpnum
1433 fi
1434
1435 if test "x$CLEANUP" != xt ; then
1436 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1437 if test -e tr_out.txt ; then
1438 mv tr_out.txt tr_out.txt.old
1439 fi
1440 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1441 fi
1442
1443 if test "x$DELDIR" = xt ; then
1444 rm -rf $DRESULTS
1445 fi

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