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Revision 1.139 - (show annotations) (download)
Thu Apr 29 16:58:40 2010 UTC (13 years, 11 months ago) by jmc
Branch: MAIN
Changes since 1.138: +39 -39 lines
switch few printing between std-out (1) and std-err (2) (more consistent).

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.138 2010/03/30 16:40:03 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee/-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
20 echo " (-optfile|-of) STRING list of optfiles to use"
21 echo " (-addr|-a) STRING list of email recipients"
22 echo " (DEF=\"\" no email is sent)"
23 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
24 echo " (DEF=\"../tools/mpack-1.6\")"
25 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
26 echo " (recognized groups: basic, tutorials)"
27 echo " (DEF=\"\" which test all)"
28 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
29 echo " (DEF=\"\" which test all)"
30 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
31 echo " Bourne-compatible \"sh\" shell"
32 echo " (DEF=\"\" for \"bash\")"
33 echo " (-adm|-ad) perform an adjoint run"
34 echo " (-oad) perform an OpenAD adjoint run"
35 echo " (-command|-c) STRING command to run"
36 echo " (-make|-m) STRING command to use for \"make\""
37 echo " (DEF=\"make\")"
38 echo " (-odir) STRING used to build output directory name"
39 echo " (DEF=\"hostname\")"
40 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
41 echo " (DEF=\"1 2 3 4 5\")"
42 echo " (-match) NUMBER Matching Criteria (number of digits)"
43 echo " (DEF=\"12\")"
44 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
45 echo " (-clean) *ONLY* run \"make CLEAN\""
46 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
47 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
48 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
49 echo " (-nogenmake|-ng) skip the genmake stage"
50 echo " (-noclean|-nc) skip the \"make clean\" stage"
51 echo " (-nodepend|-nd) skip the \"make depend\" stage"
52 echo " (-deldir|-dd) on success, delete the output directory"
53 echo " (-ts) provide timing information per timestep"
54 echo " (-papis) provide MFlop/s per timestep using PAPI"
55 echo " (-pcls) provide MFlop/s per timestep using PCL"
56 echo
57 echo "and where STRING can be a whitespace-delimited list"
58 echo "such as:"
59 echo
60 echo " -t 'exp0 exp2 exp3' "
61 echo " -addr='abc@123.com testing@home.org'"
62 echo
63 echo "provided that the expression is properly quoted within the current"
64 echo "shell (note the use of single quotes to protect white space)."
65 echo
66 exit 1
67 }
68
69 # build the mpack utility
70 build_mpack()
71 {
72 printf "building the mpack utility... "
73 MPACK="$MPACKDIR/mpack"
74 if test ! -x $MPACK ; then
75 if test ! -d $MPACKDIR ; then
76 echo
77 echo "Error: can't find \"$MPACKDIR\""
78 echo " are you sure this program is being run in the correct "
79 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
80 echo
81 HAVE_MPACK=f
82 fi
83 if test "x$CC" = x ; then
84 export CC=cc
85 fi
86 printf "building mpack (using CC=$CC)... "
87 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
88 RETVAL=$?
89 if test "x$RETVAL" != x0 ; then
90 echo
91 echo "Error building the mpack tools at: $MPACK_DIR"
92 echo
93 HAVE_MPACK=f
94 else
95 rm -f tr_build_mpack.out
96 HAVE_MPACK=t
97 echo "done"
98 fi
99 else
100 HAVE_MPACK=t
101 echo "already exist"
102 fi
103 }
104
105 testoutput_var()
106 {
107 # testoutput_var dir s1 label subdir reference_output
108 #
109 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
110 # with same output from reference file $dir/results/$reference_output
111 # using search strings s1 and text label
112
113 if [ $debug -gt 0 ]; then
114 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
115 fi
116 if [ -r $1/$4/$OUTPUTFILE ]; then
117 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
118 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
119 if [ $lncntA -lt 2 ]; then
120 if [ $verbose -gt 0 ]; then
121 echo Not enough lines of output when searching for "$2" 1>&2
122 fi
123 return 99
124 fi
125 else
126 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
127 return 99
128 fi
129 if [ $debug -gt 0 ]; then
130 echo testoutput_var: grep "$2" $1/results/$5 1>&2
131 fi
132 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
133 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
134 if [ $lncntB -lt 2 ]; then
135 if [ $verbose -gt 0 ]; then
136 echo Not enough lines of output when searching for "$2" 1>&2
137 fi
138 return 99
139 fi
140 if [ $lncntA -ne $lncntB ]; then
141 if [ $verbose -gt 0 ]; then
142 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
143 fi
144 return 99
145 fi
146 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
147 if [ $has_nan -gt 0 ] ; then
148 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
149 return 99
150 fi
151 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
152 if [ $has_inf -gt 0 ] ; then
153 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
154 return 99
155 fi
156 if [ $debug -gt 0 ]; then
157 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
158 fi
159 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
160 if [ $debug -gt 0 ]; then
161 echo testoutput_var: compare_lines 1>&2
162 fi
163 if [ $verbose -gt 1 ]; then
164 cat tmp3.txt 1>&2
165 fi
166 echo "-1" >> tmp3.txt
167 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
168 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
169 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
170 if [ $digits_of_similarity -eq 99 ]; then
171 if [ $verbose -gt 0 ]; then
172 echo testoutput_var: No comparison was available for \"$3\" 1>&2
173 fi
174 digits_of_similarity=99
175 else
176 if [ $verbose -gt 0 ]; then
177 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
178 fi
179 fi
180 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
181
182 return $digits_of_similarity
183 }
184
185 testoutput_run()
186 {
187 # testoutput_run directory subdir reference_output
188 #
189 # test output from 1 run in "directory"
190 # --> same processing for adjoint & forward test
191 # default list of output variables to be checked:
192 # 1rst : main variable used to decide if it pass or FAIL
193 # others : number of matching digits to be printed in summary.txt
194 listChk=$DEF_CHECK_LIST
195 # load experiment-specific list from file "tr_checklist" (if it exist)
196 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
197 sVar=`echo $listChk | awk '{print $1}'`
198 # remove 1rst var and expand the list: + => min max mean s.d
199 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
200 | sed 's/+//g' | sed "s/^$sVar//"`
201 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
202 # check for ptracer output in reference_output file :
203 outpref=$1/results/$3
204 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
205 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
206 for ii in $PTRACERS_NUM ; do
207 ptrfound=0
208 for jj in $ptr_mon ; do
209 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
210 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
211 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
212 done
213 if test $ptrfound = '1' ; then
214 eval "HAVE_PTR0"$ii"=t"
215 else
216 eval "HAVE_PTR0"$ii"=f"
217 if test "x$ADM" = x -a "x$OADM" = x; then
218 # remove this ptr from the list of output variable to check
219 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
220 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
221 fi
222 fi
223 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
224 done
225 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
226 if test $tst != 1 ; then
227 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
228 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
229 echo "==> WARNING: in checked list:" $listVar 1>&2
230 #- put it back once:
231 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
232 fi
233 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
234 echo "listVar='$listVar'" > $locDIR"/summary.txt"
235 allargs=""
236 for xx in $listVar
237 do
238 case $xx in
239 'PS') if [ $debug -gt 0 ]
240 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
241 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
242 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
243 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
244 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
245 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
246 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
247 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
248 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
249 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
250 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
251 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
252 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
253 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
254 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
255 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
256 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
257 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
258 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
259 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
260 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
261 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
262 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
263 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
264 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
265 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
266 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
267 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
268 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
269 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
270 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
271 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
272 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
273 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
274 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
275 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
276 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
277 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
278 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
279 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
280 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
281 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
282 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
283 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
284 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
285 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
286 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
287 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
288 esac
289 if test $xx = $sVar
290 then allargs="$allargs > $yy <"
291 else allargs="$allargs $yy"
292 fi
293 done
294
295 nbVar=`echo $listVar | awk '{print NF}'`
296 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
297 #-- fill line (up to standard length) with dot:
298 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
299 echo $allargs $adNul
300 else
301 echo $allargs
302 fi
303 # <-- same processing for adjoint & forward test
304 }
305
306 genmakemodel()
307 {
308 # genmakemodel directory
309 if test "x$NOGENMAKE" = xt ; then
310 echo "genmake skipped!"
311 else
312 if test "x$BASH" = x ; then
313 GENMAKE2="../../../tools/genmake2"
314 else
315 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
316 fi
317 (
318 cd $1;
319 command="$GENMAKE2 -ds -m $MAKE"
320 if test "x$ADM" = xt ; then
321 command="$command --mods=../code_ad"
322 elif test "x$OADM" = xt ; then
323 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
324 else
325 command="$command -mods=../code"
326 fi
327 if test "x$OPTFILE" != xNONE ; then
328 command="$command -optfile=$OPTFILE"
329 fi
330 if test "x$IEEE" != x ; then
331 command="$command -ieee"
332 fi
333 if test "x$GSL" = xt ; then
334 command="$command -gsl"
335 fi
336 if test "x$MPI" = xt ; then
337 command="$command -mpi"
338 fi
339 if test "x$MULTI_THREAD" = xt ; then
340 #- run multi-threaded using OpenMP:
341 command="$command -omp"
342 fi
343 if test "x$USE_R4" = xt ; then
344 command="$command -use_r4"
345 fi
346 if test "x$TS" = xt ; then
347 command="$command -ts"
348 fi
349 if test "x$PAPIS" = xt ; then
350 command="$command -papis"
351 else
352 if test "x$PCLS" = xt ; then
353 command="$command -pcls"
354 fi
355 fi
356 printf 'genmake ... '
357 eval $command > make.log 2>&1
358 RETVAL=$?
359 # Reduce the size of the testing emails!
360 head -100 Makefile > $CDIR/Makefile_head
361 if test "x$RETVAL" != x0 ; then
362 tail make.log
363 echo "genmakemodel: genmake failed"
364 cp genmake_* make.log $CDIR
365 return 1
366 else
367 echo "successful"
368 fi
369 )
370 fi
371 }
372
373 makeclean()
374 {
375 # makeclean directory
376 if test "x$NOCLEAN" = xt ; then
377 echo "make Clean skipped!"
378 else
379 (
380 cd $1;
381 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
382 if test -r Makefile ; then
383 printf 'clean build-dir: make Clean ... '
384 $MAKE Clean >> make.log 2>&1
385 RETVAL=$?
386 if test "x$RETVAL" != x0 ; then
387 tail make.log
388 echo "makeclean: \"make Clean\" failed"
389 cp make.log $CDIR"/make.log"
390 return 1
391 fi
392 echo successful
393 else
394 echo ''
395 fi
396 exit 0
397 )
398 fi
399 }
400
401 run_clean()
402 {
403 # run_clean directory
404 if test "x$NOCLEAN" = xt ; then
405 echo "run_clean skipped!"
406 else
407 (
408 cd $1;
409 printf 'clean run-dir ... '
410 # part of what is done after "make clean" when doing "make CLEAN"
411 find . -name "*.meta" -exec rm {} \;
412 find . -name "*.data" -exec rm {} \;
413 find . -name "fort.*" -exec rm {} \;
414 find . -type l -exec rm {} \;
415 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
416 rm -rf mnc_test_*
417 rm -f *_MIT_CE_000.opt0000 costfunction*0000
418 echo successful
419 exit 0
420 )
421 fi
422 }
423
424 makedependmodel()
425 {
426 # makedependmodel directory
427 if test "x$NODEPEND" = xt ; then
428 echo "make depend skipped!"
429 else
430 (
431 cd $1;
432 printf 'make depend ... '
433 $MAKE depend >> make.log 2>&1
434 RETVAL=$?
435 if test "x$RETVAL" != x0 ; then
436 tail make.log
437 echo "makedependmodel: make depend failed"
438 cp make.log $CDIR"/make.log"
439 return 1
440 else
441 echo successful
442 fi
443 )
444 fi
445 }
446
447 makemodel()
448 {
449 # makemodel directory
450 (
451 if test "x$NOMAKE" = xt ; then
452 cd $1;
453 if test -x $EXECUTABLE ; then
454 echo "make skipped!"
455 else
456 echo "no executable!"
457 return 2
458 fi
459 else
460 cd $1;
461 if test -r Makefile ; then
462 printf 'make ... '
463 if test "x$ADM" = xt ; then
464 $MAKE adall >> make.log 2>&1
465 elif test "x$OADM" = xt ; then
466 $MAKE adAll >> make.log 2>&1
467 else
468 if test "x$JOBS" = x ; then
469 $MAKE >> make.log 2>&1
470 else
471 $MAKE -j $JOBS >> make.log 2>&1
472 fi
473 fi
474 RETVAL=$?
475 if test "x$RETVAL" != x0 ; then
476 tail make.log
477 echo failed
478 cp make.log $CDIR"/make.log"
479 rm -f $EXECUTABLE
480 return 1
481 else
482 echo successful
483 fi
484 fi
485 fi
486 )
487 }
488
489 symlink_mpifiles()
490 {
491 # Put special links so that MPI specific files are used
492 # This MUST be invoked between makeclean and makelinks because
493 # the Makefile will link to non-mpi files by default
494
495 dir=$1
496 code_dir=$2
497 BUILD_DIR=$dir/$3
498 CODE_DIR=$dir/$code_dir
499
500 # These are files that should replace their counter-part when using -mpi
501 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
502
503 # Is this an MPI run?
504 if test "x$MPI" = xt ; then
505 # YES: We symbolically link these files to the build
506 # dir so long as there is no real file in place
507 for ii in $MPI_FILES ; do
508 i=`echo $ii | sed 's:^\./::'`
509 name=`echo $i | sed 's:_mpi::' `
510 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
511 RETVAL=$?
512 if test "x$RETVAL" != x0 ; then
513 if ! test -f $BUILD_DIR/$i ; then
514 #echo Linking $name to $i
515 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
516 fi
517 fi
518 done
519 else
520 # NO: We undo any _mpi symbolically linked files
521 for ii in $MPI_FILES ; do
522 i=`echo $ii | sed 's:^\./::'`
523 name=`echo $i | sed 's:_mpi::' `
524 if test -L $BUILD_DIR/$name ; then
525 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
526 RETVAL=$?
527 if test "x$RETVAL" = x0 ; then
528 #echo Un-linking $name from $linktarg
529 rm -f $BUILD_DIR/$name
530 fi
531 fi
532 done
533 fi
534
535 }
536
537 linkdata()
538 {
539 # linkdata run_dir input_dir_1 input_dir_2 ...
540 #
541 # symbolically link data files to run directory
542 if test -d $1 ; then
543 (
544 cd $1 ; shift
545 echo 'linkdata from dirs:' $*
546 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
547 for xx in $inpMPI ; do
548 if test -r "../"$1"/"$xx ; then
549 # found 1 _mpi sfx file in 1rst input dir and it is readable
550 yy=`echo $xx | sed 's:\.mpi$::'`
551 if test "x$MPI" = "xt" ; then
552 # mpi test: remove symbolic link & link _mpi sfx file
553 if test -h $yy ; then rm -f $yy ; fi
554 if test ! -r $yy ; then
555 ln -sf "../"$1"/"$xx $yy ;
556 printf " $xx" 1>&2
557 fi
558 else
559 # not mpi test: remove symbolic link
560 if test -h $yy ; then rm -f $yy ; fi
561 fi
562 fi
563 done
564 if test -r "../"$1"/eedata.mth" ; then
565 # found eedata.mth in 1rst input dir and it is readable
566 if test "x$MULTI_THREAD" = "xt" ; then
567 # multi-threaded test: remove symbolic link & link eedata.mth
568 if test -h eedata ; then rm -f eedata ; fi
569 if test ! -r eedata ; then
570 ln -sf "../"$1"/eedata.mth" eedata ;
571 printf ' eedata.mth' 1>&2
572 fi
573 else
574 # not multi-threaded test: remove eedata symbolic link
575 if test -h eedata ; then rm -f eedata ; fi
576 fi
577 fi
578 prevDir='NONE'
579 for ldir in $* ; do
580 if test -d "../"$ldir -a $ldir != $prevDir ; then
581 printf " ldir=${ldir}:" 1>&2
582 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
583 for i in $files ; do
584 if test ! -d "../"$ldir/$i ; then
585 if test ! -r $i ; then
586 printf ' '$i 1>&2
587 ln -sf "../"$ldir"/"$i $i
588 fi
589 fi
590 done
591 printf ' ;' 1>&2
592 if test -x "../"$ldir"/"prepare_run ; then
593 "../"$ldir"/"prepare_run 1>&2
594 else
595 echo '' 1>&2
596 fi
597 fi
598 prevDir=$ldir
599 done
600 )
601 fi
602 }
603
604 runmodel()
605 {
606 # runmodel directory
607 #
608 # runs "$COMMAND in "directory"
609 # (where "$COMMAND" is relative to "directory")
610 (
611 cd $1
612 printf 'runmodel in %s ... ' $1
613 if test -L $EXECUTABLE ; then
614 if test -x "../"$builddir"/"$EXECUTABLE ; then
615 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
616 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
617 else rm -f $EXECUTABLE
618 fi
619 fi
620 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
621 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
622 ln -sf "../"$builddir"/"$EXECUTABLE .
623 fi
624 if test ! -x $EXECUTABLE ; then
625 rm -f $RUNLOG ; touch $RUNLOG
626 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
627 echo " no executable:" $EXECUTABLE >> $RUNLOG
628 RETVAL=8
629 ENDVAL=-1
630 else
631 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
632 # output do not exist or is older than executable:
633 rm -f $RUNLOG ; touch $RUNLOG
634 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
635 ( eval $COMMAND ) >> $RUNLOG 2>&1
636 RETVAL=$?
637 else
638 RETVAL=0
639 if test -f $RUNLOG ; then
640 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
641 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
642 else
643 touch $RUNLOG
644 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
645 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
646 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
647 fi
648 fi
649 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
650 fi
651 rm -f run.log_tmp
652 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
653 echo successful
654 printf '=> output from running in %s :\n' $1 1>&2
655 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
656 # === Reduce the size of the testing emails!
657 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
658 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
659 return 0
660 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
661 #-- for some weird cases (run is finihed but with error code)
662 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
663 printf '=> output from running in %s :\n' $1 1>&2
664 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
665 return 0
666 else
667 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
668 printf '=> output from running in %s :\n' $1 1>&2
669 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
670 cp $RUNLOG $CDIR"/"$RUNLOG
671 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
672 return 1
673 fi
674 )
675 }
676
677 createcodelet()
678 {
679 # create codelet for comparing model output
680
681 printf "creating the comparison code (using CC=$CC)... "
682 cat > tr_cmpnum.c <<EOF
683 #include <stdio.h>
684 #include <math.h>
685 int main( int argc, char** argv ) {
686 int linnum,cmplin,best,lncnt;
687 double a,b,abave,relerr;
688 best = -22;
689 lncnt = 0;
690 while( 1 & ( (lncnt+=1) < 999 ) ) {
691 scanf("%d", &linnum);
692 if (linnum == -1) break;
693 scanf("%lf", &a); scanf("%lf", &b);
694 abave = 0.5*(fabs(a)+fabs(b));
695 if ( abave == abave ) {
696 if (abave > 0.0) {
697 relerr=fabs(a-b)/abave;
698 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
699 else { cmplin = -16 ; }
700 best = (best > cmplin) ? best : cmplin; }
701 else { cmplin = -22 ; }
702 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
703 }
704 else {
705 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
706 break; }
707 }
708 if (lncnt == 999) best=-29;
709 if (linnum != -1) best=-99;
710 printf("%d\n", -best);
711 return 0;
712 }
713 EOF
714 $CC -o tr_cmpnum tr_cmpnum.c -lm
715
716 if [ -x ./tr_cmpnum ]; then
717 echo "OK"
718 return 0
719 else
720 echo
721 echo "ERROR: failed to compile comparison code -- please specify"
722 echo " a C compiler using the CC environment variable."
723 exit 1
724 fi
725 }
726
727 formatresults()
728 {
729 # formatresults expt genmake depend make run results*
730
731 nm=$1
732 printf '%s %s %s %s' $2 $3 $4 $5
733 shift; shift; shift; shift; shift;
734 listPrt=$@
735 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
736 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
737 printf '%3s' $listPrt
738 # line below does not work on hp-ux_ia64 : do those substitutions later on
739 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
740
741 if [ $xx = '..' ]; then
742 printf ' N/O '
743 elif [ $xx = '--' ]; then
744 printf ' N/O '
745 elif [ $xx = 99 ]; then
746 printf ' N/O '
747 else
748 if [ $xx -ge $MATCH_CRIT ]; then
749 printf ' pass'
750 else
751 printf ' FAIL'
752 fi
753 fi
754 printf ' %s' $nm
755 printf '\n'
756
757 }
758
759 scandirs()
760 {
761 if [ $# -eq 1 ]; then
762 for arg in * ; do
763 test -f $arg/$1 && echo $arg
764 done
765 else
766 echo $*
767 fi
768 }
769
770
771 check_eedata()
772 {
773 # check_eedata size.h eedata
774 if [ $# -eq 2 ] ; then
775 if test -f $1 -a -f $2 ; then
776 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
777 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
778 if test "x$nx" = x ; then
779 rx=10
780 else
781 rx=`expr $sx % $nx`
782 fi
783 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
784 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
785 if test "x$ny" = x ; then
786 ry=20
787 else
788 ry=`expr $sy % $ny`
789 fi
790 echo `expr $rx + $ry`
791 else
792 echo '-1'
793 fi
794 else
795 echo '-2'
796 fi
797
798 }
799
800 ###############################################################################
801
802
803 # Default properties
804 debug=0
805 verbose=1
806 clean=0
807
808 IEEE=true
809 if test "x$MITGCM_IEEE" != x ; then
810 IEEE=$MITGCM_IEEE
811 fi
812 GSL=f
813
814 CLEANUP=f
815 NORUN=f
816 QUICK=f
817 NOMAKE=f
818 NOGENMAKE=f
819 NOCLEAN=f
820 NODEPEND=f
821 POSTCLEAN=f
822
823 BASH=
824 OPTFILE=NONE
825 ADDRESSES=
826 TESTDIRS=
827 SKIPDIRS=
828 MPACKDIR="../tools/mpack-1.6"
829 HAVE_MPACK=
830 MPACK=
831 COMMAND=
832 if test "x$MAKE" = x ; then
833 MAKE=make
834 fi
835 if test "x$CC" = x ; then
836 CC=cc
837 fi
838 JOBS=
839 MPI=f
840 MULTI_THREAD=f
841 OUTDIR=
842 DELDIR=
843 USE_R4=
844
845 ADM=
846 OADM=
847
848 # list of pTracers to check for monitor output
849 PTRACERS_NUM="1 2 3 4 5"
850
851 MATCH_CRIT=13
852
853 printf "parsing options... "
854
855 ac_prev=
856 for ac_option ; do
857
858 # If the previous option needs an argument, assign it.
859 if test -n "$ac_prev"; then
860 eval "$ac_prev=\$ac_option"
861 ac_prev=
862 continue
863 fi
864
865 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
866
867 case $ac_option in
868
869 -help | --help | -h | --h)
870 usage ;;
871
872 -optfile | --optfile | -of | --of)
873 ac_prev=OPTFILE ;;
874 -optfile=* | --optfile=* | -of=* | --of=*)
875 OPTFILE=$ac_optarg ;;
876
877 -addr | --addr | -a | --a)
878 ac_prev=ADDRESSES ;;
879 -addr=* | --addr=* | -a=* | --a=*)
880 ADDRESSES=$ac_optarg ;;
881 -mpackdir | --mpackdir | -mpd | --mpd)
882 ac_prev=MPACKDIR ;;
883 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
884 MPACKDIR=$ac_optarg ;;
885
886 -tdir | --tdir | -t | --t)
887 ac_prev=TESTDIRS ;;
888 -tdir=* | --tdir=* | -t=* | --t=*)
889 TESTDIRS=$ac_optarg ;;
890
891 -skipdir | --skipdir | -skd | --skd)
892 ac_prev=SKIPDIRS ;;
893 -skipdir=* | --skipdir=* | -skd=* | --skd=*)
894 SKIPDIRS=$ac_optarg ;;
895
896 -bash | --bash | -b | --b)
897 ac_prev=BASH ;;
898 -bash=* | --bash=* | -b=* | --b=*)
899 BASH=$ac_optarg ;;
900
901 -command | --command | -c | --c)
902 ac_prev=COMMAND ;;
903 -command=* | --command=* | -c=* | --c=*)
904 COMMAND=$ac_optarg ;;
905
906 -make | --make | -m | --m)
907 ac_prev=MAKE ;;
908 -make=* | --make=* | -m=* | --m=*)
909 MAKE=$ac_optarg ;;
910
911 -odir | --odir)
912 ac_prev=OUTDIR ;;
913 -odir=* | --odir=*)
914 OUTDIR=$ac_optarg ;;
915
916 -ptracers | --ptracers | -ptr | --ptr)
917 ac_prev=PTRACERS_NUM ;;
918 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
919 PTRACERS_NUM=$ac_optarg ;;
920
921 -match | --match ) ac_prev=MATCH_CRIT ;;
922 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
923
924 -j | --j) ac_prev=JOBS ;;
925 -j=* | --j=*) JOBS=$ac_optarg ;;
926
927 -clean | --clean)
928 CLEANUP=t ; DELDIR=t ;;
929
930 -norun | --norun | -nr | --nr)
931 NORUN=t ;;
932 -runonly | --runonly | -ro | --ro)
933 QUICK=t ; NOMAKE=t ;;
934 -quick | --quick | -q | --q)
935 QUICK=t ;;
936 -nogenmake | --nogenmake | -ng | --ng)
937 NOGENMAKE=t ;;
938 -noclean | --noclean | -nc | --nc)
939 NOCLEAN=t ;;
940 -nodepend | --nodepend | -nd | --nd)
941 NODEPEND=t ;;
942
943 -postclean | --postclean | -pc | --pc)
944 POSTCLEAN=t ;;
945
946 -mpi) MPI=t ;;
947
948 -mth) MULTI_THREAD=t ;;
949
950 -adm | -ad) ADM=t ;;
951
952 -oad) OADM=t; NODEPEND=t ;;
953
954 -ieee) IEEE=true ;;
955 -noieee) IEEE= ;;
956 -gsl) GSL=t ;;
957
958 -verbose) verbose=2 ;;
959 -debug) debug=1 ;;
960 -quiet) verbose=0 ;;
961
962 -deldir | -dd) DELDIR=t ;;
963
964 -use_r4|-ur4) USE_R4=t ;;
965
966 -ts) TS=t;;
967 -papis) PAPIS=t;;
968 -pcls) PCL=t;;
969
970 -*)
971 echo "Error: unrecognized option: "$ac_option
972 usage
973 ;;
974
975 *)
976 echo "Error: unrecognized argument: "$ac_option
977 usage
978 ;;
979
980 esac
981
982 done
983
984 if test "x$QUICK" = xt ; then
985 NOGENMAKE=t
986 NOCLEAN=t
987 NODEPEND=t
988 fi
989
990 #- setting for forward or ADM testing
991 if test "x$ADM" = xt ; then
992 code_dir=code_ad
993 inputdir=input_ad
994 ref_outp="output_adm.txt"
995 EXECUTABLE="mitgcmuv_ad"
996 elif test "x$OADM" = xt ; then
997 code_dir=code_oad
998 inputdir=input_oad
999 ref_outp="output_oadm.txt"
1000 EXECUTABLE="mitgcmuv_ad"
1001 else
1002 code_dir=code
1003 inputdir=input
1004 ref_outp="output.txt"
1005 EXECUTABLE="mitgcmuv"
1006 fi
1007
1008 if test "x$TESTDIRS" = x ; then
1009 LIST=`scandirs results/$ref_outp`
1010 else
1011 #- expand group of experiments:
1012 LIST=" "
1013 for xx in $TESTDIRS
1014 do
1015 case $xx in
1016 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1017 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1018 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1019 ;;
1020 'tutorials')
1021 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1022 *) LIST=${LIST}" "$xx ;;
1023 esac
1024 done
1025 fi
1026 #echo 'LIST='${LIST}'<'
1027 #- skip dirs, remove duplicate and non-directory:
1028 TESTDIRS=" "
1029 count=0
1030 for xx in $LIST
1031 do
1032 yy=`echo $SKIPDIRS | grep -c $xx`
1033 if test $yy = 0 ; then
1034 if test -d $xx ; then
1035 yy=`echo $TESTDIRS | grep -c $xx`
1036 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1037 else count=1 ;
1038 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1039 fi
1040 else
1041 if test $count = 1 ; then echo -n ", \"$xx\""
1042 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1043 fi
1044 fi
1045 done
1046 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1047 #echo 'TESTDIRS='${TESTDIRS}'<'
1048
1049 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1050 OPTFILE=$MITGCM_OF
1051 fi
1052
1053 RUNLOG="run.log"
1054 OUTPUTFILE=$ref_outp
1055 if test "x$COMMAND" = x ; then
1056 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1057 fi
1058 if test "x$MPI" = xt ; then
1059 OUTPUTFILE="STDOUT.0000"
1060 fi
1061
1062 echo "OK (COMMAND= $COMMAND )"
1063
1064 # set the Default List of output variables to be checked:
1065 # (use default or load experiment-specific list from file "tr_checklist")
1066 # content : 1rst = main variable used to decide if it pass or FAIL
1067 # others = number of matching digits to be printed in summary.txt
1068 if test "x$ADM" = x -a "x$OADM" = x; then
1069 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1070 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1071 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1072 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1073 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1074 else
1075 DEF_CHECK_LIST='Grad Cost Grad'
1076 EMPTY_RESULTS='.. ..'
1077 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1078 fi
1079
1080 # create the FORTRAN comparison code
1081 if test -x tr_cmpnum ; then
1082 echo "skipping comparison code build"
1083 else
1084 createcodelet
1085 fi
1086
1087 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1088 if test "x$ADDRESSES" = x ; then
1089 echo "skipping mpack build"
1090 else
1091 build_mpack
1092 fi
1093
1094 # Create a uniquely named directory to store results
1095 CMDLINE=$0
1096 for xx in "$@" ; do nw=`echo $xx | wc -w`
1097 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1098 else CMDLINE="$CMDLINE '$xx'" ; fi
1099 done
1100 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1101 MACH=`hostname`
1102 UNAMEA=`uname -a`
1103 DATE=`date +%Y%m%d`
1104 BASE="tr_"$MACH"_"$DATE"_"
1105 if test "x$OUTDIR" != x ; then
1106 BASE="tr_"$OUTDIR"_"$DATE"_"
1107 else
1108 short_name=`hostname | sed 's/\..*$//'`
1109 BASE="tr_"$short_name"_"$DATE"_"
1110 fi
1111 DNUM=0
1112 DRESULTS="$BASE$DNUM"
1113 while test -e $DRESULTS ; do
1114 DNUM=$(( $DNUM + 1 ))
1115 DRESULTS="$BASE$DNUM"
1116 done
1117 mkdir $DRESULTS
1118 RETVAL=$?
1119 if test "x$RETVAL" != x0 ; then
1120 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1121 exit 1
1122 fi
1123 SUMMARY="$DRESULTS/summary.txt"
1124 start_date=`date`
1125 echo $start_date > $SUMMARY
1126 echo 'run:' $CMDLINE >> $SUMMARY
1127 echo 'on :' $UNAMEA >> $SUMMARY
1128
1129 of_path=
1130 if test "x$OPTFILE" != xNONE ; then
1131 if test -r $OPTFILE ; then
1132 # get the path
1133 path=${OPTFILE%/*}
1134 if test "x$path" = x ; then
1135 of_path=`pwd`
1136 else
1137 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1138 fi
1139 file=${OPTFILE##*/}
1140 OPTFILE=$of_path/$file
1141 cp $OPTFILE $DRESULTS
1142 echo >> $SUMMARY
1143 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1144 else
1145 echo | tee $SUMMARY
1146 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1147 exit 1
1148 fi
1149 else
1150 echo >> $SUMMARY
1151 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1152 echo " so the genmake default will be used." >> $SUMMARY
1153 fi
1154 echo
1155 echo >> $SUMMARY
1156 if test "x$ADM" = x -a "x$OADM" = x; then
1157 if [ $MATCH_CRIT -lt 10 ] ;
1158 then line_0="default "$MATCH_CRIT ;
1159 else line_0="default "$MATCH_CRIT ; fi
1160 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1161 line_1="G D M c m s m s m s m s"
1162 line_2="E p a R g m m e . m m e . m m e . m m e ."
1163 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1164 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1165 for ii in $PTRACERS_NUM ; do
1166 line_0="$line_0 --PTR 0"$ii"--"
1167 line_1="$line_1 m s"
1168 line_2="$line_2 m m e ."
1169 line_3="$line_3 i a a d"
1170 line_4="$line_4 n x n ."
1171 done
1172 echo "$line_0" | tee -a $SUMMARY
1173 echo "$line_1" | tee -a $SUMMARY
1174 echo "$line_2" | tee -a $SUMMARY
1175 echo "$line_3" | tee -a $SUMMARY
1176 echo "$line_4" | tee -a $SUMMARY
1177 echo " " | tee -a $SUMMARY
1178 else
1179 echo "ADJOINT=true" >> $SUMMARY
1180 echo >> $SUMMARY
1181 if [ $MATCH_CRIT -lt 10 ] ;
1182 then line_0="default "$MATCH_CRIT ;
1183 else line_0="default "$MATCH_CRIT ; fi
1184 echo "$line_0" | tee -a $SUMMARY
1185 cat << EOF | tee -a $SUMMARY
1186 G D M C G
1187 E p a R o r
1188 N n k u s a
1189 2 d e n t d
1190
1191 EOF
1192 fi
1193 echo "-------------------------------------------------------------------------------"
1194
1195 # ...and each test directory...
1196 for dir in $TESTDIRS ; do
1197
1198 # set builddir & rundir:
1199 builddir="build"
1200 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1201 rundir="run"
1202 if test ! -d $dir/$rundir ; then
1203 rundir=$builddir
1204 fi
1205 CODE_DIR=$dir/$code_dir
1206 BUILD_DIR=$dir/$builddir
1207
1208 # Cleanup only!
1209 if test "x$CLEANUP" = xt ; then
1210 echo -n ' --- dir:' $BUILD_DIR ': '
1211 makeclean $BUILD_DIR
1212 rm -f $BUILD_DIR/$EXECUTABLE
1213 if test -d $dir/$rundir/CVS ; then
1214 echo -n ' --- dir:' $dir/$rundir ': '
1215 run_clean $dir/$rundir
1216 fi
1217 trdir=`( cd $dir ; find . -type d -name "tr_run.*" -print | sed 's/^.\///')`
1218 ttd=`echo $trdir | wc -w`
1219 if test $ttd != 0 ; then
1220 echo ' --- rm dir:' $trdir
1221 ( cd $dir ; rm -rf $trdir )
1222 fi
1223 continue
1224 fi
1225
1226 # Verify that the testdir exists and contains previous
1227 # results in the correct location--or skip this directory!
1228 fout=$dir"/results/"$ref_outp
1229 if test ! -r $fout ; then
1230 echo "can't read \"$fout\" -- skipping $dir"
1231 continue
1232 fi
1233
1234 # Check for specific files for particular type of run
1235
1236 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1237 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1238 continue
1239 fi
1240 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1241 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1242 continue
1243 fi
1244 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1245 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1246 if test $retv != 0 ; then
1247 echo "input/eedata.mth tiling misfit -- skipping $dir"
1248 continue
1249 fi
1250 fi
1251
1252 # Check whether there are "extra runs" for this testdir
1253 extra_runs=
1254 if test "x$NORUN" = xf ; then
1255 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1256 fi
1257 #echo "ex_run_dirs='$ex_run_dirs'"
1258 for exd in $ex_run_dirs ; do
1259 name=`echo $exd | sed -e "s/$inputdir\.//"`
1260 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1261 outf="$dir/results/$refExOut"
1262 if test -f $outf -a -r $outf ; then
1263 if test "x$MULTI_THREAD" = "xt" ; then
1264 if test -r $dir"/"$exd"/eedata.mth" ; then
1265 if test "x$MPI" = "xt" ; then
1266 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1267 if test $retv = 0 ; then
1268 extra_runs="$extra_runs $name"
1269 else
1270 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1271 fi
1272 else
1273 extra_runs="$extra_runs $name"
1274 fi
1275 #else echo $dir"/"$exd"/eedata.mth: not found"
1276 fi
1277 else
1278 extra_runs="$extra_runs $name"
1279 fi
1280 fi
1281 done
1282
1283 echo
1284 if test "x$extra_runs" = "x" ; then
1285 echo "Experiment: $dir"
1286 else
1287 echo "Experiment: $dir ; extra_runs=$extra_runs"
1288 fi
1289 echo
1290 unset genmake makedepend make run
1291 results=$EMPTY_RESULTS
1292
1293 # Create an output dir for each OPTFILE/tdir combination
1294 locDIR=$DRESULTS"/"$dir
1295 mkdir $locDIR
1296 CDIR=`pwd`"/$locDIR"
1297
1298 if test "x$NORUN" = xt ; then
1299 run=N
1300 genmakemodel $dir/$builddir && genmake=Y \
1301 && makeclean $dir/$builddir \
1302 && symlink_mpifiles $dir $code_dir $builddir \
1303 && makedependmodel $dir/$builddir && makedepend=Y \
1304 && makemodel $dir/$builddir && make=Y
1305 else
1306 genmakemodel $dir/$builddir && genmake=Y \
1307 && makeclean $dir/$builddir \
1308 && symlink_mpifiles $dir $code_dir $builddir \
1309 && makedependmodel $dir/$builddir && makedepend=Y \
1310 && makemodel $dir/$builddir && make=Y \
1311 && run_clean $dir/$rundir \
1312 && linkdata $dir/$rundir $inputdir input \
1313 && runmodel $dir/$rundir && run=Y \
1314 && results=`testoutput_run $dir $rundir $ref_outp`
1315 fi
1316 #echo "results='$results'"
1317
1318 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1319 echo 1>&2
1320 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1321 touch $locDIR"/summary.txt"
1322 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1323 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1324 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1325 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1326 echo "tdir='$dir'" >> $locDIR"/summary.txt"
1327 if test "x$ADM" = xt ; then
1328 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1329 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1330 >> $locDIR"/summary.txt"
1331 fi
1332
1333 for ex in $extra_runs ; do
1334 unset run
1335 results=$EMPTY_RESULTS
1336 # reference output file
1337 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1338 # Create an output dir for each OPTFILE/tdir.ex combination
1339 locDIR=$DRESULTS"/"$dir"."$ex
1340 mkdir $locDIR
1341 CDIR=`pwd`"/$locDIR"
1342 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1343 run_clean $dir/tr_run.$ex
1344 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1345 runmodel $dir/tr_run.$ex && run=Y \
1346 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1347 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1348 fres="$fres.$ex"
1349 echo 1>&2
1350 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1351 touch $locDIR"/summary.txt"
1352 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1353 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1354 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1355 echo "DATE='$DATE'" >> $locDIR"/summary.txt"
1356 echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt"
1357 if test "x$ADM" = xt ; then
1358 head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt"
1359 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1360 >> $locDIR"/summary.txt"
1361 fi
1362 if test "x$POSTCLEAN" = xt ; then
1363 run_clean $dir/tr_run.$ex
1364 fi
1365 done
1366
1367 if test -f $DRESULTS"/"genmake_state ; then : ; else
1368 if test -f $dir/$builddir/Makefile ; then
1369 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1370 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1371 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1372 echo $mkOpt >> $DRESULTS/genmake_state
1373 fi
1374 fi
1375 #postclean $dir/$builddir
1376 if test "x$POSTCLEAN" = xt ; then
1377 makeclean $dir/$builddir \
1378 && run_clean $dir/$rundir
1379 fi
1380
1381 echo "-------------------------------------------------------------------------------"
1382
1383 done
1384
1385 printf "Start time: " >> $SUMMARY
1386 echo "$start_date" >> $SUMMARY
1387 printf "End time: " >> $SUMMARY
1388 date >> $SUMMARY
1389
1390 # If addresses were supplied and mpack built successfully, then try
1391 # to send email using mpack.
1392 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1393 echo "No results email was sent."
1394 else
1395 if test "x$HAVE_MPACK" = xt ; then
1396 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1397 && gzip $DRESULTS".tar" \
1398 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1399 RETVAL=$?
1400 if test "x$RETVAL" != x0 ; then
1401 echo
1402 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1403 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1404 echo " summary of results from the directory \"$DRESULTS\"."
1405 echo
1406 else
1407 echo
1408 echo "An email containing results was sent to the following addresses:"
1409 echo " \"$ADDRESSES\""
1410 echo
1411 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1412 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1413 fi
1414 fi
1415 fi
1416
1417 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1418 rm -f tr_cmpnum.c tr_cmpnum
1419 fi
1420
1421 if test "x$CLEANUP" != xt ; then
1422 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1423 if test -e tr_out.txt ; then
1424 mv tr_out.txt tr_out.txt.old
1425 fi
1426 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1427 fi
1428
1429 if test "x$DELDIR" = xt ; then
1430 rm -rf $DRESULTS
1431 fi

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