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Revision 1.133 - (show annotations) (download)
Sat Jan 16 22:08:27 2010 UTC (14 years, 2 months ago) by jmc
Branch: MAIN
Changes since 1.132: +25 -8 lines
add option "-norun" (in short: -nr) to skip the runmodel step

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.132 2010/01/14 23:17:42 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-of=|-optfile=)STRING list of optfiles to use"
20 echo " (-a|-addr) STRING list of email recipients"
21 echo " (DEF=\"\" no email is sent)"
22 echo " (-mpd|-mpackdir) DIR location of the mpack utility"
23 echo " (DEF=\"../tools/mpack-1.6\")"
24 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
25 echo " (recognized groups: basic, tutorials)"
26 echo " (DEF=\"\" which test all)"
27 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
28 echo " (DEF=\"\" which test all)"
29 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
30 echo " Bourne-compatible \"sh\" shell"
31 echo " (DEF=\"\" for \"bash\")"
32 echo " (-adm|-ad) perform an adjoint run"
33 echo " (-oad) perform an OpenAD adjoint run"
34 echo " (-command) STRING command to run"
35 echo " (DEF=\"make output.txt\")"
36 echo " (-m|-make) STRING command to use for \"make\""
37 echo " (DEF=\"make\")"
38 echo " (-odir) STRING used to build output directory name"
39 echo " (DEF=\"hostname\")"
40 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
41 echo " (DEF=\"1 2 3 4 5\")"
42 echo " (-match) NUMBER Matching Criteria (number of digits)"
43 echo " (DEF=\"12\")"
44 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
45 echo " (-clean) *ONLY* run \"make CLEAN\""
46 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
47 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
48 echo " (-nogenmake|-ng) skip the genmake stage"
49 echo " (-noclean|-nc) skip the \"make clean\" stage"
50 echo " (-nodepend|-nd) skip the \"make depend\" stage"
51 echo " (-deldir|-dd) on success, delete the output directory"
52 echo " (-ts) provide timing information per timestep"
53 echo " (-papis) provide MFlop/s per timestep using PAPI"
54 echo " (-pcls) provide MFlop/s per timestep using PCL"
55 echo
56 echo "and where STRING can be a whitespace-delimited list"
57 echo "such as:"
58 echo
59 echo " -t 'exp0 exp2 exp3' "
60 echo " -addr='abc@123.com testing@home.org'"
61 echo
62 echo "provided that the expression is properly quoted within the current"
63 echo "shell (note the use of single quotes to protect white space)."
64 echo
65 exit 1
66 }
67
68 # build the mpack utility
69 build_mpack()
70 {
71 printf "building the mpack utility... "
72 MPACK="$MPACKDIR/mpack"
73 if test ! -x $MPACK ; then
74 if test ! -d $MPACKDIR ; then
75 echo
76 echo "Error: can't find \"$MPACKDIR\""
77 echo " are you sure this program is being run in the correct "
78 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
79 echo
80 HAVE_MPACK=f
81 fi
82 if test "x$CC" = x ; then
83 export CC=cc
84 fi
85 printf "building mpack (using CC=$CC)... "
86 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
87 RETVAL=$?
88 if test "x$RETVAL" != x0 ; then
89 echo
90 echo "Error building the mpack tools at: $MPACK_DIR"
91 echo
92 HAVE_MPACK=f
93 else
94 rm -f tr_build_mpack.out
95 HAVE_MPACK=t
96 echo "done"
97 fi
98 else
99 HAVE_MPACK=t
100 echo "already exist"
101 fi
102 }
103
104 testoutput_var()
105 {
106 # testoutput_var dir s1 label subdir reference_output
107 #
108 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
109 # with same output from reference file $dir/results/$reference_output
110 # using search strings s1 and text label
111
112 if [ $debug -gt 0 ]; then
113 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
114 fi
115 if [ -r $1/$4/$OUTPUTFILE ]; then
116 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
117 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
118 if [ $lncntA -lt 2 ]; then
119 if [ $verbose -gt 0 ]; then
120 echo Not enough lines of output when searching for "$2" 1>&2
121 fi
122 return 99
123 fi
124 else
125 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
126 return 99
127 fi
128 if [ $debug -gt 0 ]; then
129 echo testoutput_var: grep "$2" $1/results/$5 1>&2
130 fi
131 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
132 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
133 if [ $lncntB -lt 2 ]; then
134 if [ $verbose -gt 0 ]; then
135 echo Not enough lines of output when searching for "$2" 1>&2
136 fi
137 return 99
138 fi
139 if [ $lncntA -ne $lncntB ]; then
140 if [ $verbose -gt 0 ]; then
141 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
142 fi
143 return 99
144 fi
145 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
146 if [ $has_nan -gt 0 ] ; then
147 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
148 return 99
149 fi
150 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
151 if [ $has_inf -gt 0 ] ; then
152 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
153 return 99
154 fi
155 if [ $debug -gt 0 ]; then
156 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
157 fi
158 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
159 if [ $debug -gt 0 ]; then
160 echo testoutput_var: compare_lines 1>&2
161 fi
162 if [ $verbose -gt 1 ]; then
163 cat tmp3.txt 1>&2
164 fi
165 echo "-1" >> tmp3.txt
166 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
167 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
168 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
169 if [ $digits_of_similarity -eq 99 ]; then
170 if [ $verbose -gt 0 ]; then
171 echo testoutput_var: No comparison was available for \"$3\" 1>&2
172 fi
173 digits_of_similarity=99
174 else
175 if [ $verbose -gt 0 ]; then
176 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
177 fi
178 fi
179 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
180
181 return $digits_of_similarity
182 }
183
184 testoutput_run()
185 {
186 # testoutput_run directory subdir reference_output
187 #
188 # test output from 1 run in "directory"
189 # --> same processing for adjoint & forward test
190 # default list of output variables to be checked:
191 # 1rst : main variable used to decide if it pass or FAIL
192 # others : number of matching digits to be printed in summary.txt
193 listChk=$DEF_CHECK_LIST
194 # load experiment-specific list from file "tr_checklist" (if it exist)
195 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
196 sVar=`echo $listChk | awk '{print $1}'`
197 # remove 1rst var and expand the list: + => min max mean s.d
198 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
199 | sed 's/+//g' | sed "s/^$sVar//"`
200 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
201 # check for ptracer output in reference_output file :
202 outpref=$1/results/$3
203 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
204 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
205 for ii in $PTRACERS_NUM ; do
206 ptrfound=0
207 for jj in $ptr_mon ; do
208 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
209 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
210 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
211 done
212 if test $ptrfound = '1' ; then
213 eval "HAVE_PTR0"$ii"=t"
214 else
215 eval "HAVE_PTR0"$ii"=f"
216 if test "x$ADM" = x -a "x$OADM" = x; then
217 # remove this ptr from the list of output variable to check
218 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
219 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
220 fi
221 fi
222 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
223 done
224 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
225 if test $tst != 1 ; then
226 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
227 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
228 echo "==> WARNING: in checked list:" $listVar 1>&2
229 #- put it back once:
230 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
231 fi
232 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
233 echo "listVar='$listVar'" > $CDIR"/summary.txt"
234 allargs=""
235 for xx in $listVar
236 do
237 case $xx in
238 'PS') if [ $debug -gt 0 ]
239 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
240 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
241 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
242 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
243 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
244 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
245 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
246 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
247 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
248 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
249 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
250 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
251 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
252 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
253 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
254 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
255 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
256 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
257 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
258 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
259 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
260 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
261 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
262 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
263 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
264 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
265 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
266 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
267 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
268 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
269 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
270 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
271 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
272 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
273 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
274 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
275 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
276 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
277 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
278 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
279 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
280 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
281 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
282 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
283 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
284 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
285 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
286 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
287 esac
288 if test $xx = $sVar
289 then allargs="$allargs > $yy <"
290 else allargs="$allargs $yy"
291 fi
292 done
293
294 nbVar=`echo $listVar | awk '{print NF}'`
295 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
296 #-- fill line (up to standard length) with dot:
297 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
298 echo $allargs $adNul
299 else
300 echo $allargs
301 fi
302 # <-- same processing for adjoint & forward test
303 }
304
305 genmakemodel()
306 {
307 # genmakemodel directory
308 if test "x$NOGENMAKE" = xt ; then
309 echo "genmake skipped!"
310 else
311 if test "x$BASH" = x ; then
312 GENMAKE2="../../../tools/genmake2"
313 else
314 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
315 fi
316 (
317 cd $1;
318 command="$GENMAKE2 -ds -m $MAKE"
319 if test "x$ADM" = xt ; then
320 command="$command --mods=../code_ad"
321 elif test "x$OADM" = xt ; then
322 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
323 else
324 command="$command -mods=../code"
325 fi
326 if test "x$OPTFILE" != xNONE ; then
327 command="$command -optfile=$OPTFILE"
328 fi
329 if test "x$IEEE" != x ; then
330 command="$command -ieee"
331 fi
332 if test "x$GSL" = xt ; then
333 command="$command -gsl"
334 fi
335 if test "x$MPI" = xt ; then
336 command="$command -mpi"
337 fi
338 if test "x$MULTI_THREAD" = xt ; then
339 #- run multi-threaded using OpenMP:
340 command="$command -omp"
341 fi
342 if test "x$TS" = xt ; then
343 command="$command -ts"
344 fi
345 if test "x$PAPIS" = xt ; then
346 command="$command -papis"
347 else
348 if test "x$PCLS" = xt ; then
349 command="$command -pcls"
350 fi
351 fi
352 printf 'genmake ... ' 1>&2
353 # $command > make.log 2>&1
354 eval $command > make.log 2>&1
355 RETVAL=$?
356 # Reduce the size of the testing emails!
357 head -100 Makefile > $CDIR/Makefile_head
358 if test "x$RETVAL" != x0 ; then
359 tail make.log
360 echo "genmakemodel: genmake failed" 1>&2
361 cp genmake_* make.log $CDIR
362 return 1
363 else
364 echo "successful" 1>&2
365 fi
366 )
367 fi
368 }
369
370 makeclean()
371 {
372 # makeclean directory
373 if test "x$NOCLEAN" = xt ; then
374 echo "make Clean skipped!"
375 else
376 (
377 cd $1;
378 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
379 if test -r Makefile ; then
380 printf 'clean build-dir: make Clean ... ' 2>&1
381 $MAKE Clean >> make.log 2>&1
382 RETVAL=$?
383 if test "x$RETVAL" != x0 ; then
384 tail make.log
385 echo "makeclean: \"make Clean\" failed" 1>&2
386 cp make.log $CDIR"/make.log"
387 return 1
388 fi
389 echo successful 1>&2
390 else
391 echo ''
392 fi
393 exit 0
394 )
395 fi
396 }
397
398 run_clean()
399 {
400 # run_clean directory
401 if test "x$NOCLEAN" = xt ; then
402 echo "run_clean skipped!"
403 else
404 (
405 cd $1;
406 printf 'clean run-dir ... ' 2>&1
407 # part of what is done after "make clean" when doing "make CLEAN"
408 find . -name "*.meta" -exec rm {} \;
409 find . -name "*.data" -exec rm {} \;
410 find . -name "fort.*" -exec rm {} \;
411 find . -type l -exec rm {} \;
412 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
413 rm -rf mnc_test_*
414 rm -f *_MIT_CE_000.opt0000 costfunction*0000
415 echo successful 1>&2
416 exit 0
417 )
418 fi
419 }
420
421 makedependmodel()
422 {
423 # makedependmodel directory
424 if test "x$NODEPEND" = xt ; then
425 echo "make depend skipped!"
426 else
427 (
428 cd $1;
429 printf 'make depend ... ' 1>&2
430 $MAKE depend >> make.log 2>&1
431 RETVAL=$?
432 if test "x$RETVAL" != x0 ; then
433 tail make.log
434 echo "makedependmodel: make depend failed" 1>&2
435 cp make.log $CDIR"/make.log"
436 return 1
437 else
438 echo successful 1>&2
439 fi
440 )
441 fi
442 }
443
444 makemodel()
445 {
446 # makemodel directory
447 (
448 cd $1;
449 if test -r Makefile ; then
450 printf 'make ... ' 1>&2
451 if test "x$ADM" = xt ; then
452 $MAKE adall >> make.log 2>&1
453 elif test "x$OADM" = xt ; then
454 $MAKE adAll >> make.log 2>&1
455 else
456 if test "x$JOBS" = x ; then
457 $MAKE >> make.log 2>&1
458 else
459 $MAKE -j $JOBS >> make.log 2>&1
460 fi
461 fi
462 RETVAL=$?
463 if test "x$RETVAL" != x0 ; then
464 tail make.log
465 echo failed 1>&2
466 cp make.log $CDIR"/make.log"
467 rm -f $EXECUTABLE
468 return 1
469 else
470 echo successful 1>&2
471 fi
472 fi
473 )
474 }
475
476 symlink_mpifiles()
477 {
478 # Put special links so that MPI specific files are used
479 # This MUST be invoked between makeclean and makelinks because
480 # the Makefile will link to non-mpi files by default
481
482 dir=$1
483 code_dir=$2
484 BUILD_DIR=$dir/$3
485 CODE_DIR=$dir/$code_dir
486
487 # These are files that should replace their counter-part when using -mpi
488 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
489
490 # Is this an MPI run?
491 if test "x$MPI" = xt ; then
492 # YES: We symbolically link these files to the build
493 # dir so long as there is no real file in place
494 for ii in $MPI_FILES ; do
495 i=`echo $ii | sed 's:^\./::'`
496 name=`echo $i | sed 's:_mpi::' `
497 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
498 RETVAL=$?
499 if test "x$RETVAL" != x0 ; then
500 if ! test -f $BUILD_DIR/$i ; then
501 #echo Linking $name to $i
502 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
503 fi
504 fi
505 done
506 else
507 # NO: We undo any _mpi symbolically linked files
508 for ii in $MPI_FILES ; do
509 i=`echo $ii | sed 's:^\./::'`
510 name=`echo $i | sed 's:_mpi::' `
511 if test -L $BUILD_DIR/$name ; then
512 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
513 RETVAL=$?
514 if test "x$RETVAL" = x0 ; then
515 #echo Un-linking $name from $linktarg
516 rm -f $BUILD_DIR/$name
517 fi
518 fi
519 done
520 fi
521
522 }
523
524 linkdata()
525 {
526 # linkdata run_dir input_dir_1 input_dir_2 ...
527 #
528 # symbolically link data files to run directory
529 if test -d $1 ; then
530 (
531 cd $1 ; shift
532 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
533 for xx in $inpMPI ; do
534 if test -r "../"$1"/"$xx ; then
535 # found 1 _mpi sfx file in 1rst input dir and it is readable
536 yy=`echo $xx | sed 's:\.mpi$::'`
537 if test "x$MPI" = "xt" ; then
538 # mpi test: remove symbolic link & link _mpi sfx file
539 if test -h $yy ; then rm -f $yy ; fi
540 if test ! -r $yy ; then
541 ln -sf "../"$1"/"$xx $yy ;
542 printf "$xx " 1>&2
543 fi
544 else
545 # not mpi test: remove symbolic link
546 if test -h $yy ; then rm -f $yy ; fi
547 fi
548 fi
549 done
550 if test -r "../"$1"/eedata.mth" ; then
551 # found eedata.mth in 1rst input dir and it is readable
552 if test "x$MULTI_THREAD" = "xt" ; then
553 # multi-threaded test: remove symbolic link & link eedata.mth
554 if test -h eedata ; then rm -f eedata ; fi
555 if test ! -r eedata ; then
556 ln -sf "../"$1"/eedata.mth" eedata ;
557 printf 'eedata.mth ' 1>&2
558 fi
559 else
560 # not multi-threaded test: remove eedata symbolic link
561 if test -h eedata ; then rm -f eedata ; fi
562 fi
563 fi
564 prevDir='NONE'
565 for ldir in $* ; do
566 if test -d "../"$ldir -a $ldir != $prevDir ; then
567 printf 'ldir='${ldir} 1>&2
568 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
569 for i in $files ; do
570 if test ! -d "../"$ldir/$i ; then
571 if test ! -r $i ; then
572 printf ' '$i 1>&2
573 ln -sf "../"$ldir"/"$i $i
574 fi
575 fi
576 done
577 if test -x "../"$ldir"/"prepare_run ; then
578 "../"$ldir"/"prepare_run
579 fi
580 printf ' ; ' 1>&2
581 fi
582 prevDir=$ldir
583 done
584 )
585 fi
586 }
587
588 runmodel()
589 {
590 # runmodel directory
591 #
592 # runs "$COMMAND in "directory"
593 # (where "$COMMAND" is relative to "directory")
594 (
595 cd $1
596 printf 'runmodel in %s ...' $1 1>&2
597 # make output.txt
598 echo
599 if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
600 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
601 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
602 fi
603 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
604 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
605 ln -sf "../"$builddir"/"$EXECUTABLE .
606 fi
607 if test ! -x $EXECUTABLE ; then
608 rm -f $RUNLOG ; touch $RUNLOG
609 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
610 echo " no executable:" $EXECUTABLE >> $RUNLOG
611 RETVAL=8
612 ENDVAL=-1
613 else
614 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
615 # output do not exist or is older than executable:
616 rm -f $RUNLOG ; touch $RUNLOG
617 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
618 ( eval $COMMAND ) >> $RUNLOG 2>&1
619 RETVAL=$?
620 else
621 RETVAL=0
622 if test -f $RUNLOG ; then
623 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
624 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
625 else
626 touch $RUNLOG
627 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
628 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
629 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
630 fi
631 fi
632 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
633 fi
634 rm -f run.log_tmp
635 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
636 tail $RUNLOG
637 echo successful 1>&2
638 # === Reduce the size of the testing emails!
639 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
640 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
641 return 0
642 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
643 #-- for some weird cases (run is finihed but with error code)
644 tail $RUNLOG
645 echo finished with error '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
646 return 0
647 else
648 tail $RUNLOG
649 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
650 cp $RUNLOG $CDIR"/"$RUNLOG
651 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
652 return 1
653 fi
654 )
655 }
656
657 createcodelet()
658 {
659 # create codelet for comparing model output
660
661 printf "creating the comparison code (using CC=$CC)... "
662 cat > tr_cmpnum.c <<EOF
663 #include <stdio.h>
664 #include <math.h>
665 int main( int argc, char** argv ) {
666 int linnum,cmplin,best,lncnt;
667 double a,b,abave,relerr;
668 best = -22;
669 lncnt = 0;
670 while( 1 & ( (lncnt+=1) < 999 ) ) {
671 scanf("%d", &linnum);
672 if (linnum == -1) break;
673 scanf("%lf", &a); scanf("%lf", &b);
674 abave = 0.5*(fabs(a)+fabs(b));
675 if ( abave == abave ) {
676 if (abave > 0.0) {
677 relerr=fabs(a-b)/abave;
678 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
679 else { cmplin = -16 ; }
680 best = (best > cmplin) ? best : cmplin; }
681 else { cmplin = -22 ; }
682 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
683 }
684 else {
685 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
686 break; }
687 }
688 if (lncnt == 999) best=-29;
689 if (linnum != -1) best=-99;
690 printf("%d\n", -best);
691 return 0;
692 }
693 EOF
694 $CC -o tr_cmpnum tr_cmpnum.c -lm
695
696 if [ -x ./tr_cmpnum ]; then
697 echo "OK"
698 return 0
699 else
700 echo
701 echo "ERROR: failed to compile comparison code -- please specify"
702 echo " a C compiler using the CC environment variable."
703 exit 1
704 fi
705 }
706
707 formatresults()
708 {
709 # formatresults expt genmake depend make run results*
710
711 nm=$1
712 printf '%s %s %s %s' $2 $3 $4 $5
713 shift; shift; shift; shift; shift;
714 listPrt=$@
715 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
716 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
717 printf '%3s' $listPrt
718 # line below does not work on hp-ux_ia64 : do those substitutions later on
719 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
720
721 if [ $xx = '..' ]; then
722 printf ' N/O '
723 elif [ $xx = '--' ]; then
724 printf ' N/O '
725 elif [ $xx = 99 ]; then
726 printf ' N/O '
727 else
728 if [ $xx -ge $MATCH_CRIT ]; then
729 printf ' pass'
730 else
731 printf ' FAIL'
732 fi
733 fi
734 printf ' %s' $nm
735 printf '\n'
736
737 }
738
739 scandirs()
740 {
741 if [ $# -eq 1 ]; then
742 for arg in * ; do
743 test -f $arg/$1 && echo $arg
744 done
745 else
746 echo $*
747 fi
748 }
749
750
751 check_eedata()
752 {
753 # check_eedata size.h eedata
754 if [ $# -eq 2 ] ; then
755 if test -f $1 -a -f $2 ; then
756 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
757 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
758 if test "x$nx" = x ; then
759 rx=10
760 else
761 rx=`expr $sx % $nx`
762 fi
763 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
764 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
765 if test "x$ny" = x ; then
766 ry=20
767 else
768 ry=`expr $sy % $ny`
769 fi
770 echo `expr $rx + $ry`
771 else
772 echo '-1'
773 fi
774 else
775 echo '-2'
776 fi
777
778 }
779
780 ###############################################################################
781
782
783 # Default properties
784 debug=0
785 verbose=1
786 clean=0
787
788 IEEE=true
789 if test "x$MITGCM_IEEE" != x ; then
790 IEEE=$MITGCM_IEEE
791 fi
792 GSL=f
793
794 CLEANUP=f
795 NORUN=f
796 QUICK=f
797 NOGENMAKE=f
798 NOCLEAN=f
799 NODEPEND=f
800 POSTCLEAN=f
801
802 BASH=
803 OPTFILE=NONE
804 ADDRESSES=
805 TESTDIRS=
806 SKIPDIRS=
807 MPACKDIR="../tools/mpack-1.6"
808 HAVE_MPACK=
809 MPACK=
810 COMMAND=
811 if test "x$MAKE" = x ; then
812 MAKE=make
813 fi
814 if test "x$CC" = x ; then
815 CC=cc
816 fi
817 JOBS=
818 MPI=f
819 MULTI_THREAD=f
820 OUTDIR=
821 DELDIR=
822
823 ADM=
824 OADM=
825
826 # list of pTracers to check for monitor output
827 PTRACERS_NUM="1 2 3 4 5"
828
829 MATCH_CRIT=13
830
831 printf "parsing options... "
832
833 ac_prev=
834 for ac_option ; do
835
836 # If the previous option needs an argument, assign it.
837 if test -n "$ac_prev"; then
838 eval "$ac_prev=\$ac_option"
839 ac_prev=
840 continue
841 fi
842
843 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
844
845 case $ac_option in
846
847 -help | --help | -h | --h)
848 usage ;;
849
850 -optfile | --optfile | -of | --of)
851 ac_prev=OPTFILE ;;
852 -optfile=* | --optfile=* | -of=* | --of=*)
853 OPTFILE=$ac_optarg ;;
854
855 -addr | --addr | -a | --a)
856 ac_prev=ADDRESSES ;;
857 -addr=* | --addr=*)
858 ADDRESSES=$ac_optarg ;;
859 -mpackdir | --mpackdir | -mpd | --mpd)
860 ac_prev=MPACKDIR ;;
861 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
862 MPACKDIR=$ac_optarg ;;
863
864 -tdir | --tdir | -t | --t)
865 ac_prev=TESTDIRS ;;
866 -tdir=* | --tdir=*)
867 TESTDIRS=$ac_optarg ;;
868
869 -skipdir | --skipdir | -skd | --skd)
870 ac_prev=SKIPDIRS ;;
871 -skipdir=* | --skipdir=*)
872 SKIPDIRS=$ac_optarg ;;
873
874 -bash | --bash | -b | --b)
875 ac_prev=BASH ;;
876 -bash=* | --bash=*)
877 BASH=$ac_optarg ;;
878
879 -command | --command | -c | --c)
880 ac_prev=COMMAND ;;
881 -command=* | --command=*)
882 COMMAND=$ac_optarg ;;
883
884 -make | --make | -m | --m)
885 ac_prev=MAKE ;;
886 -make=* | --make=*)
887 MAKE=$ac_optarg ;;
888
889 -odir | --odir)
890 ac_prev=OUTDIR ;;
891 -odir=* | --odir=*)
892 OUTDIR=$ac_optarg ;;
893
894 -ptracers | --ptracers | -ptr | --ptr)
895 ac_prev=PTRACERS_NUM ;;
896 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
897 PTRACERS_NUM=$ac_optarg ;;
898
899 -match | --match ) ac_prev=MATCH_CRIT ;;
900 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
901
902 -j) ac_prev=JOBS ;;
903 -j=*) JOBS=$ac_optarg ;;
904
905 -clean | --clean)
906 CLEANUP=t ; DELDIR=t ;;
907
908 -norun | --norun | -nr | --nr)
909 NORUN=t ;;
910 -quick | --quick | -q | --q)
911 QUICK=t ;;
912 -nogenmake | --nogenmake | -ng | --ng)
913 NOGENMAKE=t ;;
914 -noclean | --noclean | -nc | --nc)
915 NOCLEAN=t ;;
916 -nodepend | --nodepend | -nd | --nd)
917 NODEPEND=t ;;
918
919 -postclean | --postclean | -pc | --pc)
920 POSTCLEAN=t ;;
921
922 -mpi) MPI=t ;;
923
924 -mth) MULTI_THREAD=t ;;
925
926 -adm | -ad) ADM=t ;;
927
928 -oad) OADM=t; NODEPEND=t ;;
929
930 -ieee) IEEE=true ;;
931 -noieee) IEEE= ;;
932 -gsl) GSL=t ;;
933
934 -verbose) verbose=2 ;;
935 -debug) debug=1 ;;
936 -quiet) verbose=0 ;;
937
938 -deldir | -dd) DELDIR=t ;;
939
940 -ts) TS=t;;
941
942 -papis) PAPIS=t;;
943
944 -pcls) PCL=t;;
945
946 -*)
947 echo "Error: unrecognized option: "$ac_option
948 usage
949 ;;
950
951 *)
952 echo "Error: unrecognized argument: "$ac_option
953 usage
954 ;;
955
956 esac
957
958 done
959
960 if test "x$QUICK" = xt ; then
961 NOGENMAKE=t
962 NOCLEAN=t
963 NODEPEND=t
964 fi
965
966 #- setting for forward or ADM testing
967 if test "x$ADM" = xt ; then
968 code_dir=code_ad
969 inputdir=input_ad
970 ref_outp="output_adm.txt"
971 EXECUTABLE="mitgcmuv_ad"
972 elif test "x$OADM" = xt ; then
973 code_dir=code_oad
974 inputdir=input_oad
975 ref_outp="output_oadm.txt"
976 EXECUTABLE="mitgcmuv_ad"
977 else
978 code_dir=code
979 inputdir=input
980 ref_outp="output.txt"
981 EXECUTABLE="mitgcmuv"
982 fi
983
984 if test "x$TESTDIRS" = x ; then
985 LIST=`scandirs results/$ref_outp`
986 else
987 #- expand group of experiments:
988 LIST=" "
989 for xx in $TESTDIRS
990 do
991 case $xx in
992 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
993 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
994 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
995 ;;
996 'tutorials')
997 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
998 *) LIST=${LIST}" "$xx ;;
999 esac
1000 done
1001 fi
1002 #echo 'LIST='${LIST}'<'
1003 #- skip dirs, remove duplicate and non-directory:
1004 TESTDIRS=" "
1005 count=0
1006 for xx in $LIST
1007 do
1008 yy=`echo $SKIPDIRS | grep -c $xx`
1009 if test $yy = 0 ; then
1010 if test -d $xx ; then
1011 yy=`echo $TESTDIRS | grep -c $xx`
1012 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1013 else count=1 ;
1014 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1015 fi
1016 else
1017 if test $count = 1 ; then echo -n ", \"$xx\""
1018 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1019 fi
1020 fi
1021 done
1022 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1023 #echo 'TESTDIRS='${TESTDIRS}'<'
1024
1025 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1026 OPTFILE=$MITGCM_OF
1027 fi
1028
1029 RUNLOG="run.log"
1030 OUTPUTFILE=$ref_outp
1031 if test "x$COMMAND" = x ; then
1032 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1033 fi
1034 if test "x$MPI" = xt ; then
1035 OUTPUTFILE="STDOUT.0000"
1036 fi
1037
1038 echo "OK (COMMAND= $COMMAND )"
1039
1040 # set the Default List of output variables to be checked:
1041 # (use default or load experiment-specific list from file "tr_checklist")
1042 # content : 1rst = main variable used to decide if it pass or FAIL
1043 # others = number of matching digits to be printed in summary.txt
1044 if test "x$ADM" = x -a "x$OADM" = x; then
1045 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1046 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1047 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1048 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1049 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1050 else
1051 DEF_CHECK_LIST='Grad Cost Grad'
1052 EMPTY_RESULTS='.. ..'
1053 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1054 fi
1055
1056 # create the FORTRAN comparison code
1057 if test -x tr_cmpnum ; then
1058 echo "skipping comparison code build"
1059 else
1060 createcodelet
1061 fi
1062
1063 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1064 if test "x$ADDRESSES" = x ; then
1065 echo "skipping mpack build"
1066 else
1067 build_mpack
1068 fi
1069
1070 # Create a uniquely named directory to store results
1071 CMDLINE=$0
1072 for xx in "$@" ; do nw=`echo $xx | wc -w`
1073 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1074 else CMDLINE="$CMDLINE '$xx'" ; fi
1075 done
1076 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1077 MACH=`hostname`
1078 UNAMEA=`uname -a`
1079 DATE=`date +%Y%m%d`
1080 BASE="tr_"$MACH"_"$DATE"_"
1081 if test "x$OUTDIR" != x ; then
1082 BASE="tr_"$OUTDIR"_"$DATE"_"
1083 else
1084 short_name=`hostname | sed 's/\..*$//'`
1085 BASE="tr_"$short_name"_"$DATE"_"
1086 fi
1087 DNUM=0
1088 DRESULTS="$BASE$DNUM"
1089 while test -e $DRESULTS ; do
1090 DNUM=$(( $DNUM + 1 ))
1091 DRESULTS="$BASE$DNUM"
1092 done
1093 mkdir $DRESULTS
1094 RETVAL=$?
1095 if test "x$RETVAL" != x0 ; then
1096 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1097 exit 1
1098 fi
1099 SUMMARY="$DRESULTS/summary.txt"
1100 start_date=`date`
1101 echo $start_date > $SUMMARY
1102 echo 'run:' $CMDLINE >> $SUMMARY
1103 echo 'on :' $UNAMEA >> $SUMMARY
1104
1105 of_path=
1106 if test "x$OPTFILE" != xNONE ; then
1107 if test -r $OPTFILE ; then
1108 # get the path
1109 path=${OPTFILE%/*}
1110 if test "x$path" = x ; then
1111 of_path=`pwd`
1112 else
1113 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1114 fi
1115 file=${OPTFILE##*/}
1116 OPTFILE=$of_path/$file
1117 cp $OPTFILE $DRESULTS
1118 echo >> $SUMMARY
1119 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1120 else
1121 echo | tee $SUMMARY
1122 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1123 exit 1
1124 fi
1125 else
1126 echo >> $SUMMARY
1127 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1128 echo " so the genmake default will be used." >> $SUMMARY
1129 fi
1130 echo
1131 echo >> $SUMMARY
1132 if test "x$ADM" = x -a "x$OADM" = x; then
1133 if [ $MATCH_CRIT -lt 10 ] ;
1134 then line_0="default "$MATCH_CRIT ;
1135 else line_0="default "$MATCH_CRIT ; fi
1136 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1137 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1138 line_1="G D M c m s m s m s m s"
1139 line_2="E p a R g m m e . m m e . m m e . m m e ."
1140 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1141 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1142 for ii in $PTRACERS_NUM ; do
1143 line_0="$line_0 --PTR 0"$ii"--"
1144 line_1="$line_1 m s"
1145 line_2="$line_2 m m e ."
1146 line_3="$line_3 i a a d"
1147 line_4="$line_4 n x n ."
1148 done
1149 echo "$line_0" | tee -a $SUMMARY
1150 echo "$line_1" | tee -a $SUMMARY
1151 echo "$line_2" | tee -a $SUMMARY
1152 echo "$line_3" | tee -a $SUMMARY
1153 echo "$line_4" | tee -a $SUMMARY
1154 echo " " | tee -a $SUMMARY
1155 else
1156 echo "ADJOINT=true" >> $SUMMARY
1157 echo >> $SUMMARY
1158 if [ $MATCH_CRIT -lt 10 ] ;
1159 then line_0="default "$MATCH_CRIT ;
1160 else line_0="default "$MATCH_CRIT ; fi
1161 echo "$line_0" | tee -a $SUMMARY
1162 cat << EOF | tee -a $SUMMARY
1163 G D M C G
1164 E p a R o r
1165 N n k u s a
1166 2 d e n t d
1167
1168 EOF
1169 fi
1170
1171 # ...and each test directory...
1172 for dir in $TESTDIRS ; do
1173
1174 # set builddir & rundir:
1175 builddir="build"
1176 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1177 rundir="run"
1178 if test ! -d $dir/$rundir ; then
1179 rundir=$builddir
1180 fi
1181 CODE_DIR=$dir/$code_dir
1182 BUILD_DIR=$dir/$builddir
1183
1184 # Cleanup only!
1185 if test "x$CLEANUP" = xt ; then
1186 echo -n ' --- dir:' $BUILD_DIR ': '
1187 makeclean $BUILD_DIR
1188 rm -f $BUILD_DIR/$EXECUTABLE
1189 if test -d $dir/$rundir/CVS ; then
1190 echo -n ' --- dir:' $dir/$rundir ': '
1191 run_clean $dir/$rundir
1192 fi
1193 trdir=`( cd $dir ; find . -type d -name "tr_run.*" -print | sed 's/^.\///')`
1194 ttd=`echo $trdir | wc -w`
1195 if test $ttd != 0 ; then
1196 echo ' --- rm dir:' $trdir
1197 ( cd $dir ; rm -rf $trdir )
1198 fi
1199 continue
1200 fi
1201
1202 # Verify that the testdir exists and contains previous
1203 # results in the correct location--or skip this directory!
1204 fout=$dir"/results/"$ref_outp
1205 if test ! -r $fout ; then
1206 echo "can't read \"$fout\" -- skipping $dir"
1207 continue
1208 fi
1209
1210 # Check for specific files for particular type of run
1211
1212 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1213 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1214 continue
1215 fi
1216 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1217 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1218 continue
1219 fi
1220 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1221 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1222 if test $retv != 0 ; then
1223 echo "input/eedata.mth tiling misfit -- skipping $dir"
1224 continue
1225 fi
1226 fi
1227
1228 # Check whether there are "extra runs" for this testdir
1229 extra_runs=
1230 if test "x$NORUN" = xf ; then
1231 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1232 fi
1233 #echo "ex_run_dirs='$ex_run_dirs'"
1234 for exd in $ex_run_dirs ; do
1235 name=`echo $exd | sed -e "s/$inputdir\.//"`
1236 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1237 outf="$dir/results/$refExOut"
1238 if test -f $outf -a -r $outf ; then
1239 if test "x$MULTI_THREAD" = "xt" ; then
1240 if test -r $dir"/"$exd"/eedata.mth" ; then
1241 if test "x$MPI" = "xt" ; then
1242 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1243 if test $retv = 0 ; then
1244 extra_runs="$extra_runs $name"
1245 else
1246 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1247 fi
1248 else
1249 extra_runs="$extra_runs $name"
1250 fi
1251 #else echo $dir"/"$exd"/eedata.mth: not found"
1252 fi
1253 else
1254 extra_runs="$extra_runs $name"
1255 fi
1256 fi
1257 done
1258
1259 echo "-------------------------------------------------------------------------------"
1260 echo
1261 if test "x$extra_runs" = "x" ; then
1262 echo "Experiment: $dir"
1263 else
1264 echo "Experiment: $dir ; extra_runs=$extra_runs"
1265 fi
1266 echo
1267 unset genmake makedepend make run
1268 results=$EMPTY_RESULTS
1269
1270 # Create an output dir for each OPTFILE/tdir combination
1271 rel_CDIR=$DRESULTS"/"$dir
1272 mkdir $rel_CDIR
1273 CDIR=`pwd`"/$rel_CDIR"
1274
1275 if test "x$NORUN" = xt ; then
1276 run=N
1277 genmakemodel $dir/$builddir && genmake=Y \
1278 && makeclean $dir/$builddir \
1279 && run_clean $dir/$rundir \
1280 && symlink_mpifiles $dir $code_dir $builddir \
1281 && makedependmodel $dir/$builddir && makedepend=Y \
1282 && makemodel $dir/$builddir && make=Y
1283 else
1284 genmakemodel $dir/$builddir && genmake=Y \
1285 && makeclean $dir/$builddir \
1286 && run_clean $dir/$rundir \
1287 && symlink_mpifiles $dir $code_dir $builddir \
1288 && makedependmodel $dir/$builddir && makedepend=Y \
1289 && makemodel $dir/$builddir && make=Y \
1290 && linkdata $dir/$rundir $inputdir input \
1291 && runmodel $dir/$rundir && run=Y \
1292 && results=`testoutput_run $dir $rundir $ref_outp`
1293 fi
1294
1295 #echo "results='$results'"
1296 echo
1297 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1298 echo
1299 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1300 touch $CDIR"/summary.txt"
1301 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1302 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1303 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1304 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1305 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1306 if test "x$ADM" = xt ; then
1307 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1308 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1309 >> $CDIR"/summary.txt"
1310 fi
1311
1312 for ex in $extra_runs ; do
1313 unset run
1314 results=$EMPTY_RESULTS
1315 # reference output file
1316 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1317 # Create an output dir for each OPTFILE/tdir.ex combination
1318 rel_CDIR=$DRESULTS"/"$dir"."$ex
1319 mkdir $rel_CDIR
1320 CDIR=`pwd`"/$rel_CDIR"
1321 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1322 run_clean $dir/tr_run.$ex
1323 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1324 runmodel $dir/tr_run.$ex && run=Y \
1325 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1326 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1327 fres="$fres.$ex"
1328 echo
1329 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1330 touch $CDIR"/summary.txt"
1331 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1332 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1333 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1334 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1335 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1336 if test "x$ADM" = xt ; then
1337 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1338 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1339 >> $CDIR"/summary.txt"
1340 fi
1341 if test "x$POSTCLEAN" = xt ; then
1342 run_clean $dir/tr_run.$ex
1343 fi
1344 done
1345
1346 #postclean $dir/$builddir
1347 if test "x$POSTCLEAN" = xt ; then
1348 makeclean $dir/$builddir \
1349 && run_clean $dir/$rundir
1350 fi
1351
1352 echo "-------------------------------------------------------------------------------"
1353
1354 done
1355
1356 printf "Start time: " >> $SUMMARY
1357 echo "$start_date" >> $SUMMARY
1358 printf "End time: " >> $SUMMARY
1359 date >> $SUMMARY
1360
1361 # If addresses were supplied and mpack built successfully, then try
1362 # to send email using mpack.
1363 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1364 echo "No results email was sent."
1365 else
1366 if test "x$HAVE_MPACK" = xt ; then
1367 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1368 && gzip $DRESULTS".tar" \
1369 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1370 RETVAL=$?
1371 if test "x$RETVAL" != x0 ; then
1372 echo
1373 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1374 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1375 echo " summary of results from the directory \"$DRESULTS\"."
1376 echo
1377 else
1378 echo
1379 echo "An email containing results was sent to the following addresses:"
1380 echo " \"$ADDRESSES\""
1381 echo
1382 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1383 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1384 fi
1385 fi
1386 fi
1387
1388 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1389 rm -f tr_cmpnum.c tr_cmpnum
1390 fi
1391
1392 if test "x$CLEANUP" != xt ; then
1393 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1394 if test -e tr_out.txt ; then
1395 mv tr_out.txt tr_out.txt.old
1396 fi
1397 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1398 fi
1399
1400 if test "x$DELDIR" = xt ; then
1401 rm -rf $DRESULTS
1402 fi

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