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Revision 1.127 - (show annotations) (download)
Thu Jun 4 23:40:53 2009 UTC (11 years, 1 month ago) by jmc
Branch: MAIN
CVS Tags: checkpoint61p
Changes since 1.126: +13 -11 lines
little changes in "-clean" option

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.126 2009/05/19 21:34:01 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-of=|-optfile=)STRING list of optfiles to use"
20 echo " (-a|-addr) STRING list of email recipients"
21 echo " (DEF=\"\" no email is sent)"
22 echo " (-mpd|-mpackdir) DIR location of the mpack utility"
23 echo " (DEF=\"../tools/mpack-1.6\")"
24 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
25 echo " (recognized groups: basic, tutorials)"
26 echo " (DEF=\"\" which test all)"
27 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
28 echo " (DEF=\"\" which test all)"
29 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
30 echo " Bourne-compatible \"sh\" shell"
31 echo " (DEF=\"\" for \"bash\")"
32 echo " (-adm|-ad) perform an adjoint run"
33 echo " (-oad) perform an OpenAD adjoint run"
34 echo " (-command) STRING command to run"
35 echo " (DEF=\"make output.txt\")"
36 echo " (-m|-make) STRING command to use for \"make\""
37 echo " (DEF=\"make\")"
38 echo " (-odir) STRING used to build output directory name"
39 echo " (DEF=\"hostname\")"
40 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
41 echo " (DEF=\"1 2 3 4 5\")"
42 echo " (-match) NUMBER Matching Criteria (number of digits)"
43 echo " (DEF=\"12\")"
44 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
45 echo " (-clean) *ONLY* run \"make CLEAN\""
46 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
47 echo " (-nogenmake|-ng) skip the genmake stage"
48 echo " (-noclean|-nc) skip the \"make clean\" stage"
49 echo " (-nodepend|-nd) skip the \"make depend\" stage"
50 echo " (-deldir|-dd) on success, delete the output directory"
51 echo " (-ts) provide timing information per timestep"
52 echo " (-papis) provide MFlop/s per timestep using PAPI"
53 echo " (-pcls) provide MFlop/s per timestep using PCL"
54 echo
55 echo "and where STRING can be a whitespace-delimited list"
56 echo "such as:"
57 echo
58 echo " -t 'exp0 exp2 exp3' "
59 echo " -addr='abc@123.com testing@home.org'"
60 echo
61 echo "provided that the expression is properly quoted within the current"
62 echo "shell (note the use of single quotes to protect white space)."
63 echo
64 exit 1
65 }
66
67 # build the mpack utility
68 build_mpack()
69 {
70 printf "building the mpack utility... "
71 MPACK="$MPACKDIR/mpack"
72 if test ! -x $MPACK ; then
73 if test ! -d $MPACKDIR ; then
74 echo
75 echo "Error: can't find \"$MPACKDIR\""
76 echo " are you sure this program is being run in the correct "
77 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
78 echo
79 HAVE_MPACK=f
80 fi
81 if test "x$CC" = x ; then
82 export CC=cc
83 fi
84 printf "building mpack (using CC=$CC)... "
85 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
86 RETVAL=$?
87 if test "x$RETVAL" != x0 ; then
88 echo
89 echo "Error building the mpack tools at: $MPACK_DIR"
90 echo
91 HAVE_MPACK=f
92 else
93 rm -f tr_build_mpack.out
94 HAVE_MPACK=t
95 echo "done"
96 fi
97 else
98 HAVE_MPACK=t
99 echo "already exist"
100 fi
101 }
102
103 testoutput_var()
104 {
105 # testoutput_var dir s1 label subdir reference_output
106 #
107 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
108 # with same output from reference file $dir/results/$reference_output
109 # using search strings s1 and text label
110
111 if [ $debug -gt 0 ]; then
112 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
113 fi
114 if [ -r $1/$4/$OUTPUTFILE ]; then
115 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
116 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
117 if [ $lncntA -lt 2 ]; then
118 if [ $verbose -gt 0 ]; then
119 echo Not enough lines of output when searching for "$2" 1>&2
120 fi
121 return 99
122 fi
123 else
124 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
125 return 99
126 fi
127 if [ $debug -gt 0 ]; then
128 echo testoutput_var: grep "$2" $1/results/$5 1>&2
129 fi
130 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
131 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
132 if [ $lncntB -lt 2 ]; then
133 if [ $verbose -gt 0 ]; then
134 echo Not enough lines of output when searching for "$2" 1>&2
135 fi
136 return 99
137 fi
138 if [ $lncntA -ne $lncntB ]; then
139 if [ $verbose -gt 0 ]; then
140 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
141 fi
142 return 99
143 fi
144 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
145 if [ $has_nan -gt 0 ] ; then
146 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
147 return 99
148 fi
149 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
150 if [ $has_inf -gt 0 ] ; then
151 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
152 return 99
153 fi
154 if [ $debug -gt 0 ]; then
155 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
156 fi
157 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
158 if [ $debug -gt 0 ]; then
159 echo testoutput_var: compare_lines 1>&2
160 fi
161 if [ $verbose -gt 1 ]; then
162 cat tmp3.txt 1>&2
163 fi
164 echo "-1" >> tmp3.txt
165 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
166 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
167 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
168 if [ $digits_of_similarity -eq 99 ]; then
169 if [ $verbose -gt 0 ]; then
170 echo testoutput_var: No comparison was available for \"$3\" 1>&2
171 fi
172 digits_of_similarity=99
173 else
174 if [ $verbose -gt 0 ]; then
175 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
176 fi
177 fi
178 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
179
180 return $digits_of_similarity
181 }
182
183 testoutput_run()
184 {
185 # testoutput_run directory subdir reference_output
186 #
187 # test output from 1 run in "directory"
188 # --> same processing for adjoint & forward test
189 # default list of output variables to be checked:
190 # 1rst : main variable used to decide if it pass or FAIL
191 # others : number of matching digits to be printed in summary.txt
192 listChk=$DEF_CHECK_LIST
193 # load experiment-specific list from file "tr_checklist" (if it exist)
194 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
195 sVar=`echo $listChk | awk '{print $1}'`
196 # remove 1rst var and expand the list: + => min max mean s.d
197 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
198 | sed 's/+//g' | sed "s/^$sVar//"`
199 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
200 # check for ptracer output in reference_output file :
201 outpref=$1/results/$3
202 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
203 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
204 for ii in $PTRACERS_NUM ; do
205 ptrfound=0
206 for jj in $ptr_mon ; do
207 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
208 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
209 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
210 done
211 if test $ptrfound = '1' ; then
212 eval "HAVE_PTR0"$ii"=t"
213 else
214 eval "HAVE_PTR0"$ii"=f"
215 if test "x$ADM" = x -a "x$OADM" = x; then
216 # remove this ptr from the list of output variable to check
217 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
218 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
219 fi
220 fi
221 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
222 done
223 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
224 if test $tst != 1 ; then
225 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
226 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
227 echo "==> WARNING: in checked list:" $listVar 1>&2
228 #- put it back once:
229 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
230 fi
231 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
232 echo "listVar='$listVar'" > $CDIR"/summary.txt"
233 allargs=""
234 for xx in $listVar
235 do
236 case $xx in
237 'PS') if [ $debug -gt 0 ]
238 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
239 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
240 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
241 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
242 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
243 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
244 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
245 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
246 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
247 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
248 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
249 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
250 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
251 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
252 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
253 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
254 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
255 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
256 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
257 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
258 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
259 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
260 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
261 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
262 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
263 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
264 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
265 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
266 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
267 'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
268 'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
269 'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
270 'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
271 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
272 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
273 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
274 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
275 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
276 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
277 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
278 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
279 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
280 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
281 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
282 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
283 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
284 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
285 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
286 esac
287 if test $xx = $sVar
288 then allargs="$allargs > $yy <"
289 else allargs="$allargs $yy"
290 fi
291 done
292
293 nbVar=`echo $listVar | awk '{print NF}'`
294 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
295 #-- fill line (up to standard length) with dot:
296 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
297 echo $allargs $adNul
298 else
299 echo $allargs
300 fi
301 # <-- same processing for adjoint & forward test
302 }
303
304 genmakemodel()
305 {
306 # genmakemodel directory
307 if test "x$NOGENMAKE" = xt ; then
308 echo "genmake skipped!"
309 else
310 if test "x$BASH" = x ; then
311 GENMAKE2="../../../tools/genmake2"
312 else
313 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
314 fi
315 (
316 cd $1;
317 command="$GENMAKE2 -ds -m $MAKE"
318 if test "x$ADM" = xt ; then
319 command="$command --mods=../code_ad"
320 elif test "x$OADM" = xt ; then
321 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
322 else
323 command="$command -mods=../code"
324 fi
325 if test "x$OPTFILE" != xNONE ; then
326 command="$command -optfile=$OPTFILE"
327 fi
328 if test "x$IEEE" != x ; then
329 command="$command -ieee"
330 fi
331 if test "x$GSL" = xt ; then
332 command="$command -gsl"
333 fi
334 if test "x$MPI" = xt ; then
335 command="$command -mpi"
336 fi
337 if test "x$MULTI_THREAD" = xt ; then
338 #- run multi-threaded using OpenMP:
339 command="$command -omp"
340 fi
341 if test "x$TS" = xt ; then
342 command="$command -ts"
343 fi
344 if test "x$PAPIS" = xt ; then
345 command="$command -papis"
346 else
347 if test "x$PCLS" = xt ; then
348 command="$command -pcls"
349 fi
350 fi
351 printf 'genmake ... ' 1>&2
352 # $command > make.log 2>&1
353 eval $command > make.log 2>&1
354 RETVAL=$?
355 # Reduce the size of the testing emails!
356 head -100 Makefile > $CDIR/Makefile_head
357 if test "x$RETVAL" != x0 ; then
358 tail make.log
359 echo "genmakemodel: genmake failed" 1>&2
360 cp genmake_* make.log $CDIR
361 return 1
362 else
363 echo "successful" 1>&2
364 fi
365 )
366 fi
367 }
368
369 makeclean()
370 {
371 # makeclean directory
372 if test "x$NOCLEAN" = xt ; then
373 echo "make Clean skipped!"
374 else
375 (
376 cd $1;
377 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
378 if test -r Makefile ; then
379 printf 'clean build-dir: make Clean ... ' 2>&1
380 $MAKE Clean >> make.log 2>&1
381 RETVAL=$?
382 if test "x$RETVAL" != x0 ; then
383 tail make.log
384 echo "makeclean: \"make Clean\" failed" 1>&2
385 cp make.log $CDIR"/make.log"
386 return 1
387 fi
388 echo successful 1>&2
389 else
390 echo ''
391 fi
392 exit 0
393 )
394 fi
395 }
396
397 run_clean()
398 {
399 # run_clean directory
400 if test "x$NOCLEAN" = xt ; then
401 echo "run_clean skipped!"
402 else
403 (
404 cd $1;
405 printf 'clean run-dir ... ' 2>&1
406 # part of what is done after "make clean" when doing "make CLEAN"
407 find . -name "*.meta" -exec rm {} \;
408 find . -name "*.data" -exec rm {} \;
409 find . -name "fort.*" -exec rm {} \;
410 find . -type l -exec rm {} \;
411 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
412 rm -rf mnc_test_*
413 rm -f *_MIT_CE_000.opt0000 costfunction*0000
414 echo successful 1>&2
415 exit 0
416 )
417 fi
418 }
419
420 makedependmodel()
421 {
422 # makedependmodel directory
423 if test "x$NODEPEND" = xt ; then
424 echo "make depend skipped!"
425 else
426 (
427 cd $1;
428 printf 'make depend ... ' 1>&2
429 $MAKE depend >> make.log 2>&1
430 RETVAL=$?
431 if test "x$RETVAL" != x0 ; then
432 tail make.log
433 echo "makedependmodel: make depend failed" 1>&2
434 cp make.log $CDIR"/make.log"
435 return 1
436 else
437 echo successful 1>&2
438 fi
439 )
440 fi
441 }
442
443 makemodel()
444 {
445 # makemodel directory
446 (
447 cd $1;
448 if test -r Makefile ; then
449 printf 'make ... ' 1>&2
450 if test "x$ADM" = xt ; then
451 $MAKE adall >> make.log 2>&1
452 elif test "x$OADM" = xt ; then
453 $MAKE adAll >> make.log 2>&1
454 else
455 if test "x$JOBS" = x ; then
456 $MAKE >> make.log 2>&1
457 else
458 $MAKE -j $JOBS >> make.log 2>&1
459 fi
460 fi
461 RETVAL=$?
462 if test "x$RETVAL" != x0 ; then
463 tail make.log
464 echo failed 1>&2
465 cp make.log $CDIR"/make.log"
466 return 1
467 else
468 echo successful 1>&2
469 fi
470 fi
471 )
472 }
473
474 symlink_mpifiles()
475 {
476 # Put special links so that MPI specific files are used
477 # This MUST be invoked between makeclean and makelinks because
478 # the Makefile will link to non-mpi files by default
479
480 dir=$1
481 code_dir=$2
482 BUILD_DIR=$dir/$3
483 CODE_DIR=$dir/$code_dir
484
485 # These are files that should replace their counter-part when using -mpi
486 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
487
488 # Is this an MPI run?
489 if test "x$MPI" = xt ; then
490 # YES: We symbolically link these files to the build
491 # dir so long as there is no real file in place
492 for ii in $MPI_FILES ; do
493 i=`echo $ii | sed 's:^\./::'`
494 name=`echo $i | sed 's:_mpi::' `
495 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
496 RETVAL=$?
497 if test "x$RETVAL" != x0 ; then
498 if ! test -f $BUILD_DIR/$i ; then
499 #echo Linking $name to $i
500 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
501 fi
502 fi
503 done
504 else
505 # NO: We undo any _mpi symbolically linked files
506 for ii in $MPI_FILES ; do
507 i=`echo $ii | sed 's:^\./::'`
508 name=`echo $i | sed 's:_mpi::' `
509 if test -L $BUILD_DIR/$name ; then
510 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
511 RETVAL=$?
512 if test "x$RETVAL" = x0 ; then
513 #echo Un-linking $name from $linktarg
514 rm -f $BUILD_DIR/$name
515 fi
516 fi
517 done
518 fi
519
520 }
521
522 linkdata()
523 {
524 # linkdata run_dir input_dir_1 input_dir_2 ...
525 #
526 # symbolically link data files to run directory
527 if test -d $1 ; then
528 (
529 cd $1 ; shift
530 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
531 for xx in $inpMPI ; do
532 if test -r "../"$1"/"$xx ; then
533 # found 1 _mpi sfx file in 1rst input dir and it is readable
534 yy=`echo $xx | sed 's:\.mpi$::'`
535 if test "x$MPI" = "xt" ; then
536 # mpi test: remove symbolic link & link _mpi sfx file
537 if test -h $yy ; then rm -f $yy ; fi
538 if test ! -r $yy ; then
539 ln -sf "../"$1"/"$xx $yy ;
540 printf "$xx " 1>&2
541 fi
542 else
543 # not mpi test: remove symbolic link
544 if test -h $yy ; then rm -f $yy ; fi
545 fi
546 fi
547 done
548 if test -r "../"$1"/eedata.mth" ; then
549 # found eedata.mth in 1rst input dir and it is readable
550 if test "x$MULTI_THREAD" = "xt" ; then
551 # multi-threaded test: remove symbolic link & link eedata.mth
552 if test -h eedata ; then rm -f eedata ; fi
553 if test ! -r eedata ; then
554 ln -sf "../"$1"/eedata.mth" eedata ;
555 printf 'eedata.mth ' 1>&2
556 fi
557 else
558 # not multi-threaded test: remove eedata symbolic link
559 if test -h eedata ; then rm -f eedata ; fi
560 fi
561 fi
562 prevDir='NONE'
563 for ldir in $* ; do
564 if test -d "../"$ldir -a $ldir != $prevDir ; then
565 printf 'ldir='${ldir} 1>&2
566 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
567 for i in $files ; do
568 if test ! -d "../"$ldir/$i ; then
569 if test ! -r $i ; then
570 printf ' '$i 1>&2
571 ln -sf "../"$ldir"/"$i $i
572 fi
573 fi
574 done
575 if test -x "../"$ldir"/"prepare_run ; then
576 "../"$ldir"/"prepare_run
577 fi
578 printf ' ; ' 1>&2
579 fi
580 prevDir=$ldir
581 done
582 )
583 fi
584 }
585
586 runmodel()
587 {
588 # runmodel directory
589 #
590 # runs "$COMMAND in "directory"
591 # (where "$COMMAND" is relative to "directory")
592 (
593 cd $1
594 printf 'runmodel in %s ...' $1 1>&2
595 # make output.txt
596 echo
597 if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
598 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
599 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
600 fi
601 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
602 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
603 ln -sf "../"$builddir"/"$EXECUTABLE .
604 fi
605 if test ! -x $EXECUTABLE ; then
606 rm -f $RUNLOG ; touch $RUNLOG
607 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
608 echo " no executable:" $EXECUTABLE >> $RUNLOG
609 RETVAL=8
610 ENDVAL=-1
611 else
612 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
613 # output do not exist or is older than executable:
614 rm -f $RUNLOG ; touch $RUNLOG
615 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
616 ( eval $COMMAND ) >> $RUNLOG 2>&1
617 RETVAL=$?
618 else
619 RETVAL=0
620 if test -f $RUNLOG ; then
621 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
622 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
623 else
624 touch $RUNLOG
625 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
626 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
627 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
628 fi
629 fi
630 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
631 fi
632 rm -f run.log_tmp
633 #if test "x$RETVAL" = x0 ; then
634 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
635 tail $RUNLOG
636 echo successful 1>&2
637 # === Reduce the size of the testing emails!
638 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
639 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
640 return 0
641 else
642 tail $RUNLOG
643 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
644 cp $RUNLOG $CDIR"/"$RUNLOG
645 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
646 return 1
647 fi
648 )
649 }
650
651 createcodelet()
652 {
653 # create codelet for comparing model output
654
655 printf "creating the comparison code (using CC=$CC)... "
656 cat > tr_cmpnum.c <<EOF
657 #include <stdio.h>
658 #include <math.h>
659 int main( int argc, char** argv ) {
660 int linnum,cmplin,best,lncnt;
661 double a,b,abave,relerr;
662 best = -22;
663 lncnt = 0;
664 while( 1 & ( (lncnt+=1) < 999 ) ) {
665 scanf("%d", &linnum);
666 if (linnum == -1) break;
667 scanf("%lf", &a); scanf("%lf", &b);
668 abave = 0.5*(fabs(a)+fabs(b));
669 if ( abave == abave ) {
670 if (abave > 0.0) {
671 relerr=fabs(a-b)/abave;
672 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
673 else { cmplin = -16 ; }
674 best = (best > cmplin) ? best : cmplin; }
675 else { cmplin = -22 ; }
676 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
677 }
678 else {
679 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
680 break; }
681 }
682 if (lncnt == 999) best=-29;
683 if (linnum != -1) best=-99;
684 printf("%d\n", -best);
685 return 0;
686 }
687 EOF
688 $CC -o tr_cmpnum tr_cmpnum.c -lm
689
690 if [ -x ./tr_cmpnum ]; then
691 echo "OK"
692 return 0
693 else
694 echo
695 echo "ERROR: failed to compile comparison code -- please specify"
696 echo " a C compiler using the CC environment variable."
697 exit 1
698 fi
699 }
700
701 formatresults()
702 {
703 # formatresults expt genmake depend make run results*
704
705 nm=$1
706 printf '%s %s %s %s' $2 $3 $4 $5
707 shift; shift; shift; shift; shift;
708 listPrt=$@
709 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
710 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
711 printf '%3s' $listPrt
712 # line below does not work on hp-ux_ia64 : do those substitutions later on
713 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
714
715 if [ $xx = '..' ]; then
716 printf ' N/O '
717 elif [ $xx = '--' ]; then
718 printf ' N/O '
719 elif [ $xx = 99 ]; then
720 printf ' N/O '
721 else
722 if [ $xx -ge $MATCH_CRIT ]; then
723 printf ' pass'
724 else
725 printf ' FAIL'
726 fi
727 fi
728 printf ' %s' $nm
729 printf '\n'
730
731 }
732
733 scandirs()
734 {
735 if [ $# -eq 1 ]; then
736 for arg in * ; do
737 test -f $arg/$1 && echo $arg
738 done
739 else
740 echo $*
741 fi
742 }
743
744
745 check_eedata()
746 {
747 # check_eedata size.h eedata
748 if [ $# -eq 2 ] ; then
749 if test -f $1 -a -f $2 ; then
750 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
751 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
752 if test "x$nx" = x ; then
753 rx=10
754 else
755 rx=`expr $sx % $nx`
756 fi
757 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
758 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
759 if test "x$ny" = x ; then
760 ry=20
761 else
762 ry=`expr $sy % $ny`
763 fi
764 echo `expr $rx + $ry`
765 else
766 echo '-1'
767 fi
768 else
769 echo '-2'
770 fi
771
772 }
773
774 ###############################################################################
775
776
777 # Default properties
778 debug=0
779 verbose=1
780 clean=0
781
782 IEEE=true
783 if test "x$MITGCM_IEEE" != x ; then
784 IEEE=$MITGCM_IEEE
785 fi
786 GSL=f
787
788 CLEANUP=f
789 QUICK=f
790 NOGENMAKE=f
791 NOCLEAN=f
792 NODEPEND=f
793 POSTCLEAN=f
794
795 BASH=
796 OPTFILE=NONE
797 ADDRESSES=
798 TESTDIRS=
799 SKIPDIRS=
800 MPACKDIR="../tools/mpack-1.6"
801 HAVE_MPACK=
802 MPACK=
803 COMMAND=
804 if test "x$MAKE" = x ; then
805 MAKE=make
806 fi
807 if test "x$CC" = x ; then
808 CC=cc
809 fi
810 JOBS=
811 MPI=f
812 MULTI_THREAD=f
813 OUTDIR=
814 DELDIR=
815
816 ADM=
817 OADM=
818
819 # list of pTracers to check for monitor output
820 PTRACERS_NUM="1 2 3 4 5"
821
822 MATCH_CRIT=13
823
824 printf "parsing options... "
825
826 ac_prev=
827 for ac_option ; do
828
829 # If the previous option needs an argument, assign it.
830 if test -n "$ac_prev"; then
831 eval "$ac_prev=\$ac_option"
832 ac_prev=
833 continue
834 fi
835
836 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
837
838 case $ac_option in
839
840 -help | --help | -h | --h)
841 usage ;;
842
843 -optfile | --optfile | -of | --of)
844 ac_prev=OPTFILE ;;
845 -optfile=* | --optfile=* | -of=* | --of=*)
846 OPTFILE=$ac_optarg ;;
847
848 -addr | --addr | -a | --a)
849 ac_prev=ADDRESSES ;;
850 -addr=* | --addr=*)
851 ADDRESSES=$ac_optarg ;;
852 -mpackdir | --mpackdir | -mpd | --mpd)
853 ac_prev=MPACKDIR ;;
854 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
855 MPACKDIR=$ac_optarg ;;
856
857 -tdir | --tdir | -t | --t)
858 ac_prev=TESTDIRS ;;
859 -tdir=* | --tdir=*)
860 TESTDIRS=$ac_optarg ;;
861
862 -skipdir | --skipdir | -skd | --skd)
863 ac_prev=SKIPDIRS ;;
864 -skipdir=* | --skipdir=*)
865 SKIPDIRS=$ac_optarg ;;
866
867 -bash | --bash | -b | --b)
868 ac_prev=BASH ;;
869 -bash=* | --bash=*)
870 BASH=$ac_optarg ;;
871
872 -command | --command | -c | --c)
873 ac_prev=COMMAND ;;
874 -command=* | --command=*)
875 COMMAND=$ac_optarg ;;
876
877 -make | --make | -m | --m)
878 ac_prev=MAKE ;;
879 -make=* | --make=*)
880 MAKE=$ac_optarg ;;
881
882 -odir | --odir)
883 ac_prev=OUTDIR ;;
884 -odir=* | --odir=*)
885 OUTDIR=$ac_optarg ;;
886
887 -ptracers | --ptracers | -ptr | --ptr)
888 ac_prev=PTRACERS_NUM ;;
889 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
890 PTRACERS_NUM=$ac_optarg ;;
891
892 -match | --match ) ac_prev=MATCH_CRIT ;;
893 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
894
895 -j) ac_prev=JOBS ;;
896 -j=*) JOBS=$ac_optarg ;;
897
898 -clean | --clean)
899 CLEANUP=t ; DELDIR=t ;;
900
901 -quick | --quick | -q | --q)
902 QUICK=t ;;
903 -nogenmake | --nogenmake | -ng | --ng)
904 NOGENMAKE=t ;;
905 -noclean | --noclean | -nc | --nc)
906 NOCLEAN=t ;;
907 -nodepend | --nodepend | -nd | --nd)
908 NODEPEND=t ;;
909
910 -postclean | --postclean | -pc | --pc)
911 POSTCLEAN=t ;;
912
913 -mpi) MPI=t ;;
914
915 -mth) MULTI_THREAD=t ;;
916
917 -adm | -ad) ADM=t ;;
918
919 -oad) OADM=t; NODEPEND=t ;;
920
921 -ieee) IEEE=true ;;
922 -noieee) IEEE= ;;
923 -gsl) GSL=t ;;
924
925 -verbose) verbose=2 ;;
926 -debug) debug=1 ;;
927 -quiet) verbose=0 ;;
928
929 -deldir | -dd) DELDIR=t ;;
930
931 -ts) TS=t;;
932
933 -papis) PAPIS=t;;
934
935 -pcls) PCL=t;;
936
937 -*)
938 echo "Error: unrecognized option: "$ac_option
939 usage
940 ;;
941
942 *)
943 echo "Error: unrecognized argument: "$ac_option
944 usage
945 ;;
946
947 esac
948
949 done
950
951 if test "x$QUICK" = xt ; then
952 NOGENMAKE=t
953 NOCLEAN=t
954 NODEPEND=t
955 fi
956
957 #- setting for forward or ADM testing
958 if test "x$ADM" = xt ; then
959 code_dir=code_ad
960 inputdir=input_ad
961 ref_outp="output_adm.txt"
962 EXECUTABLE="mitgcmuv_ad"
963 elif test "x$OADM" = xt ; then
964 code_dir=code_oad
965 inputdir=input_oad
966 ref_outp="output_oadm.txt"
967 EXECUTABLE="mitgcmuv_ad"
968 else
969 code_dir=code
970 inputdir=input
971 ref_outp="output.txt"
972 EXECUTABLE="mitgcmuv"
973 fi
974
975 if test "x$TESTDIRS" = x ; then
976 LIST=`scandirs results/$ref_outp`
977 else
978 #- expand group of experiments:
979 LIST=" "
980 for xx in $TESTDIRS
981 do
982 case $xx in
983 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
984 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
985 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
986 ;;
987 'tutorials')
988 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
989 *) LIST=${LIST}" "$xx ;;
990 esac
991 done
992 fi
993 #echo 'LIST='${LIST}'<'
994 #- skip dirs, remove duplicate and non-directory:
995 TESTDIRS=" "
996 count=0
997 for xx in $LIST
998 do
999 yy=`echo $SKIPDIRS | grep -c $xx`
1000 if test $yy = 0 ; then
1001 if test -d $xx ; then
1002 yy=`echo $TESTDIRS | grep -c $xx`
1003 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1004 else count=1 ;
1005 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1006 fi
1007 else
1008 if test $count = 1 ; then echo -n ", \"$xx\""
1009 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1010 fi
1011 fi
1012 done
1013 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1014 #echo 'TESTDIRS='${TESTDIRS}'<'
1015
1016 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1017 OPTFILE=$MITGCM_OF
1018 fi
1019
1020 RUNLOG="run.log"
1021 OUTPUTFILE=$ref_outp
1022 if test "x$COMMAND" = x ; then
1023 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1024 fi
1025 if test "x$MPI" = xt ; then
1026 OUTPUTFILE="STDOUT.0000"
1027 fi
1028
1029 echo "OK (COMMAND= $COMMAND )"
1030
1031 # set the Default List of output variables to be checked:
1032 # (use default or load experiment-specific list from file "tr_checklist")
1033 # content : 1rst = main variable used to decide if it pass or FAIL
1034 # others = number of matching digits to be printed in summary.txt
1035 if test "x$ADM" = x -a "x$OADM" = x; then
1036 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1037 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1038 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1039 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1040 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1041 else
1042 DEF_CHECK_LIST='Grad Cost Grad'
1043 EMPTY_RESULTS='.. ..'
1044 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1045 fi
1046
1047 # create the FORTRAN comparison code
1048 createcodelet
1049
1050 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1051 if test "x$ADDRESSES" = x ; then
1052 echo "skipping mpack build"
1053 else
1054 build_mpack
1055 fi
1056
1057 # Create a uniquely named directory to store results
1058 CMDLINE=$0
1059 for xx in "$@" ; do nw=`echo $xx | wc -w`
1060 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1061 else CMDLINE="$CMDLINE '$xx'" ; fi
1062 done
1063 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1064 MACH=`hostname`
1065 UNAMEA=`uname -a`
1066 DATE=`date +%Y%m%d`
1067 BASE="tr_"$MACH"_"$DATE"_"
1068 if test "x$OUTDIR" != x ; then
1069 BASE="tr_"$OUTDIR"_"$DATE"_"
1070 else
1071 short_name=`hostname | sed 's/\..*$//'`
1072 BASE="tr_"$short_name"_"$DATE"_"
1073 fi
1074 DNUM=0
1075 DRESULTS="$BASE$DNUM"
1076 while test -e $DRESULTS ; do
1077 DNUM=$(( $DNUM + 1 ))
1078 DRESULTS="$BASE$DNUM"
1079 done
1080 mkdir $DRESULTS
1081 RETVAL=$?
1082 if test "x$RETVAL" != x0 ; then
1083 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1084 exit 1
1085 fi
1086 SUMMARY="$DRESULTS/summary.txt"
1087 start_date=`date`
1088 echo $start_date > $SUMMARY
1089 echo 'run:' $CMDLINE >> $SUMMARY
1090 echo 'on :' $UNAMEA >> $SUMMARY
1091
1092 of_path=
1093 if test "x$OPTFILE" != xNONE ; then
1094 if test -r $OPTFILE ; then
1095 # get the path
1096 path=${OPTFILE%/*}
1097 if test "x$path" = x ; then
1098 of_path=`pwd`
1099 else
1100 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1101 fi
1102 file=${OPTFILE##*/}
1103 OPTFILE=$of_path/$file
1104 cp $OPTFILE $DRESULTS
1105 echo >> $SUMMARY
1106 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1107 else
1108 echo | tee $SUMMARY
1109 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1110 exit 1
1111 fi
1112 else
1113 echo >> $SUMMARY
1114 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1115 echo " so the genmake default will be used." >> $SUMMARY
1116 fi
1117 echo
1118 echo >> $SUMMARY
1119 if test "x$ADM" = x -a "x$OADM" = x; then
1120 if [ $MATCH_CRIT -lt 10 ] ;
1121 then line_0="default "$MATCH_CRIT ;
1122 else line_0="default "$MATCH_CRIT ; fi
1123 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1124 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1125 line_1="G D M c m s m s m s m s"
1126 line_2="E p a R g m m e . m m e . m m e . m m e ."
1127 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1128 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1129 for ii in $PTRACERS_NUM ; do
1130 line_0="$line_0 --PTR 0"$ii"--"
1131 line_1="$line_1 m s"
1132 line_2="$line_2 m m e ."
1133 line_3="$line_3 i a a d"
1134 line_4="$line_4 n x n ."
1135 done
1136 echo "$line_0" | tee -a $SUMMARY
1137 echo "$line_1" | tee -a $SUMMARY
1138 echo "$line_2" | tee -a $SUMMARY
1139 echo "$line_3" | tee -a $SUMMARY
1140 echo "$line_4" | tee -a $SUMMARY
1141 echo " " | tee -a $SUMMARY
1142 else
1143 echo "ADJOINT=true" >> $SUMMARY
1144 echo >> $SUMMARY
1145 if [ $MATCH_CRIT -lt 10 ] ;
1146 then line_0="default "$MATCH_CRIT ;
1147 else line_0="default "$MATCH_CRIT ; fi
1148 echo "$line_0" | tee -a $SUMMARY
1149 cat << EOF | tee -a $SUMMARY
1150 G D M C G
1151 E p a R o r
1152 N n k u s a
1153 2 d e n t d
1154
1155 EOF
1156 fi
1157
1158 # ...and each test directory...
1159 for dir in $TESTDIRS ; do
1160
1161 # set builddir & rundir:
1162 builddir="build"
1163 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1164 rundir="run"
1165 if test ! -d $dir/$rundir ; then
1166 rundir=$builddir
1167 fi
1168 CODE_DIR=$dir/$code_dir
1169 BUILD_DIR=$dir/$builddir
1170
1171 # Cleanup only!
1172 if test "x$CLEANUP" = xt ; then
1173 echo -n ' --- dir:' $BUILD_DIR ': '
1174 makeclean $BUILD_DIR
1175 if test -d $dir/$rundir/CVS ; then
1176 echo -n ' --- dir:' $dir/$rundir ': '
1177 run_clean $dir/$rundir
1178 fi
1179 trdir=`( cd $dir ; find . -type d -name "tr_run.*" -print | sed 's/^.\///')`
1180 ttd=`echo $trdir | wc -w`
1181 if test $ttd != 0 ; then
1182 echo ' --- rm dir:' $trdir
1183 ( cd $dir ; rm -rf $trdir )
1184 fi
1185 continue
1186 fi
1187
1188 # Verify that the testdir exists and contains previous
1189 # results in the correct location--or skip this directory!
1190 fout=$dir"/results/"$ref_outp
1191 if test ! -r $fout ; then
1192 echo "can't read \"$fout\" -- skipping $dir"
1193 continue
1194 fi
1195
1196 # Check for specific files for particular type of run
1197
1198 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1199 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1200 continue
1201 fi
1202 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1203 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1204 continue
1205 fi
1206 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1207 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1208 if test $retv != 0 ; then
1209 echo "input/eedata.mth tiling misfit -- skipping $dir"
1210 continue
1211 fi
1212 fi
1213
1214 # Check whether there are "extra runs" for this testdir
1215 extra_runs=
1216 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1217 #echo "ex_run_dirs='$ex_run_dirs'"
1218 for exd in $ex_run_dirs ; do
1219 name=`echo $exd | sed -e "s/$inputdir\.//"`
1220 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1221 outf="$dir/results/$refExOut"
1222 if test -f $outf -a -r $outf ; then
1223 if test "x$MULTI_THREAD" = "xt" ; then
1224 if test -r $dir"/"$exd"/eedata.mth" ; then
1225 if test "x$MPI" = "xt" ; then
1226 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1227 if test $retv = 0 ; then
1228 extra_runs="$extra_runs $name"
1229 else
1230 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1231 fi
1232 else
1233 extra_runs="$extra_runs $name"
1234 fi
1235 #else echo $dir"/"$exd"/eedata.mth: not found"
1236 fi
1237 else
1238 extra_runs="$extra_runs $name"
1239 fi
1240 fi
1241 done
1242
1243 echo "-------------------------------------------------------------------------------"
1244 echo
1245 if test "x$extra_runs" = "x" ; then
1246 echo "Experiment: $dir"
1247 else
1248 echo "Experiment: $dir ; extra_runs=$extra_runs"
1249 fi
1250 echo
1251 unset genmake makedepend make run
1252 results=$EMPTY_RESULTS
1253
1254 # Create an output dir for each OPTFILE/tdir combination
1255 rel_CDIR=$DRESULTS"/"$dir
1256 mkdir $rel_CDIR
1257 CDIR=`pwd`"/$rel_CDIR"
1258
1259 if test "x$CLEANUP" = xt ; then
1260 echo '====>>> this is to check that we never go through this part <<< ==='
1261 makeclean $dir/$builddir \
1262 && run_clean $dir/$rundir
1263 else
1264 genmakemodel $dir/$builddir && genmake=Y \
1265 && makeclean $dir/$builddir \
1266 && run_clean $dir/$rundir \
1267 && symlink_mpifiles $dir $code_dir $builddir \
1268 && makedependmodel $dir/$builddir && makedepend=Y \
1269 && makemodel $dir/$builddir && make=Y \
1270 && linkdata $dir/$rundir $inputdir input \
1271 && runmodel $dir/$rundir && run=Y \
1272 && results=`testoutput_run $dir $rundir $ref_outp`
1273 fi
1274
1275 echo
1276 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1277 echo
1278 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1279 touch $CDIR"/summary.txt"
1280 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1281 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1282 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1283 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1284 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1285 if test "x$ADM" = xt ; then
1286 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1287 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1288 >> $CDIR"/summary.txt"
1289 fi
1290
1291 for ex in $extra_runs ; do
1292 unset run
1293 results=$EMPTY_RESULTS
1294 # reference output file
1295 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1296 # Create an output dir for each OPTFILE/tdir.ex combination
1297 rel_CDIR=$DRESULTS"/"$dir"."$ex
1298 mkdir $rel_CDIR
1299 CDIR=`pwd`"/$rel_CDIR"
1300 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1301 run_clean $dir/tr_run.$ex
1302 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1303 runmodel $dir/tr_run.$ex && run=Y \
1304 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1305 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1306 fres="$fres.$ex"
1307 echo
1308 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1309 touch $CDIR"/summary.txt"
1310 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1311 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1312 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1313 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1314 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1315 if test "x$ADM" = xt ; then
1316 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1317 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1318 >> $CDIR"/summary.txt"
1319 fi
1320 if test "x$POSTCLEAN" = xt ; then
1321 run_clean $dir/tr_run.$ex
1322 fi
1323 done
1324
1325 #postclean $dir/$builddir
1326 if test "x$POSTCLEAN" = xt ; then
1327 makeclean $dir/$builddir \
1328 && run_clean $dir/$rundir
1329 fi
1330
1331 echo "-------------------------------------------------------------------------------"
1332
1333 done
1334
1335 printf "Start time: " >> $SUMMARY
1336 echo "$start_date" >> $SUMMARY
1337 printf "End time: " >> $SUMMARY
1338 date >> $SUMMARY
1339
1340 # If addresses were supplied and mpack built successfully, then try
1341 # to send email using mpack.
1342 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1343 echo "No results email was sent."
1344 else
1345 if test "x$HAVE_MPACK" = xt ; then
1346 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1347 && gzip $DRESULTS".tar" \
1348 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1349 RETVAL=$?
1350 if test "x$RETVAL" != x0 ; then
1351 echo
1352 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1353 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1354 echo " summary of results from the directory \"$DRESULTS\"."
1355 echo
1356 else
1357 echo
1358 echo "An email containing results was sent to the following addresses:"
1359 echo " \"$ADDRESSES\""
1360 echo
1361 fi
1362 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1363 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1364 fi
1365 fi
1366
1367 rm -f tr_cmpnum.c tr_cmpnum
1368
1369 if test "x$CLEANUP" != xt ; then
1370 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1371 if test -e tr_out.txt ; then
1372 mv tr_out.txt tr_out.txt.old
1373 fi
1374 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1375 fi
1376
1377 if test "x$DELDIR" = xt ; then
1378 rm -rf $DRESULTS
1379 fi

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