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Revision 1.126 - (show annotations) (download)
Tue May 19 21:34:01 2009 UTC (14 years, 10 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint61o
Changes since 1.125: +4 -4 lines
typo in print message

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.125 2009/05/12 18:44:24 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-of=|-optfile=)STRING list of optfiles to use"
20 echo " (-a|-addr) STRING list of email recipients"
21 echo " (DEF=\"\" no email is sent)"
22 echo " (-mpd|-mpackdir) DIR location of the mpack utility"
23 echo " (DEF=\"../tools/mpack-1.6\")"
24 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
25 echo " (recognized groups: basic, tutorials)"
26 echo " (DEF=\"\" which test all)"
27 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
28 echo " (DEF=\"\" which test all)"
29 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
30 echo " Bourne-compatible \"sh\" shell"
31 echo " (DEF=\"\" for \"bash\")"
32 echo " (-adm|-ad) perform an adjoint run"
33 echo " (-oad) perform an OpenAD adjoint run"
34 echo " (-command) STRING command to run"
35 echo " (DEF=\"make output.txt\")"
36 echo " (-m|-make) STRING command to use for \"make\""
37 echo " (DEF=\"make\")"
38 echo " (-odir) STRING used to build output directory name"
39 echo " (DEF=\"hostname\")"
40 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
41 echo " (DEF=\"1 2 3 4 5\")"
42 echo " (-match) NUMBER Matching Criteria (number of digits)"
43 echo " (DEF=\"12\")"
44 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
45 echo " (-clean) *ONLY* run \"make CLEAN\""
46 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
47 echo " (-nogenmake|-ng) skip the genmake stage"
48 echo " (-noclean|-nc) skip the \"make clean\" stage"
49 echo " (-nodepend|-nd) skip the \"make depend\" stage"
50 echo " (-deldir|-dd) on success, delete the output directory"
51 echo " (-ts) provide timing information per timestep"
52 echo " (-papis) provide MFlop/s per timestep using PAPI"
53 echo " (-pcls) provide MFlop/s per timestep using PCL"
54 echo
55 echo "and where STRING can be a whitespace-delimited list"
56 echo "such as:"
57 echo
58 echo " -t 'exp0 exp2 exp3' "
59 echo " -addr='abc@123.com testing@home.org'"
60 echo
61 echo "provided that the expression is properly quoted within the current"
62 echo "shell (note the use of single quotes to protect white space)."
63 echo
64 exit 1
65 }
66
67 # build the mpack utility
68 build_mpack()
69 {
70 printf "building the mpack utility... "
71 MPACK="$MPACKDIR/mpack"
72 if test ! -x $MPACK ; then
73 if test ! -d $MPACKDIR ; then
74 echo
75 echo "Error: can't find \"$MPACKDIR\""
76 echo " are you sure this program is being run in the correct "
77 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
78 echo
79 HAVE_MPACK=f
80 fi
81 if test "x$CC" = x ; then
82 export CC=cc
83 fi
84 printf "building mpack (using CC=$CC)... "
85 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
86 RETVAL=$?
87 if test "x$RETVAL" != x0 ; then
88 echo
89 echo "Error building the mpack tools at: $MPACK_DIR"
90 echo
91 HAVE_MPACK=f
92 else
93 rm -f tr_build_mpack.out
94 HAVE_MPACK=t
95 echo "done"
96 fi
97 else
98 HAVE_MPACK=t
99 echo "already exist"
100 fi
101 }
102
103 testoutput_var()
104 {
105 # testoutput_var dir s1 label subdir reference_output
106 #
107 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
108 # with same output from reference file $dir/results/$reference_output
109 # using search strings s1 and text label
110
111 if [ $debug -gt 0 ]; then
112 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
113 fi
114 if [ -r $1/$4/$OUTPUTFILE ]; then
115 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
116 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
117 if [ $lncntA -lt 2 ]; then
118 if [ $verbose -gt 0 ]; then
119 echo Not enough lines of output when searching for "$2" 1>&2
120 fi
121 return 99
122 fi
123 else
124 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
125 return 99
126 fi
127 if [ $debug -gt 0 ]; then
128 echo testoutput_var: grep "$2" $1/results/$5 1>&2
129 fi
130 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
131 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
132 if [ $lncntB -lt 2 ]; then
133 if [ $verbose -gt 0 ]; then
134 echo Not enough lines of output when searching for "$2" 1>&2
135 fi
136 return 99
137 fi
138 if [ $lncntA -ne $lncntB ]; then
139 if [ $verbose -gt 0 ]; then
140 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
141 fi
142 return 99
143 fi
144 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
145 if [ $has_nan -gt 0 ] ; then
146 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
147 return 99
148 fi
149 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
150 if [ $has_inf -gt 0 ] ; then
151 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
152 return 99
153 fi
154 if [ $debug -gt 0 ]; then
155 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
156 fi
157 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
158 if [ $debug -gt 0 ]; then
159 echo testoutput_var: compare_lines 1>&2
160 fi
161 if [ $verbose -gt 1 ]; then
162 cat tmp3.txt 1>&2
163 fi
164 echo "-1" >> tmp3.txt
165 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
166 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
167 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
168 if [ $digits_of_similarity -eq 99 ]; then
169 if [ $verbose -gt 0 ]; then
170 echo testoutput_var: No comparison was available for \"$3\" 1>&2
171 fi
172 digits_of_similarity=99
173 else
174 if [ $verbose -gt 0 ]; then
175 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
176 fi
177 fi
178 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
179
180 return $digits_of_similarity
181 }
182
183 testoutput_run()
184 {
185 # testoutput_run directory subdir reference_output
186 #
187 # test output from 1 run in "directory"
188 # --> same processing for adjoint & forward test
189 # default list of output variables to be checked:
190 # 1rst : main variable used to decide if it pass or FAIL
191 # others : number of matching digits to be printed in summary.txt
192 listChk=$DEF_CHECK_LIST
193 # load experiment-specific list from file "tr_checklist" (if it exist)
194 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
195 sVar=`echo $listChk | awk '{print $1}'`
196 # remove 1rst var and expand the list: + => min max mean s.d
197 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
198 | sed 's/+//g' | sed "s/^$sVar//"`
199 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
200 # check for ptracer output in reference_output file :
201 outpref=$1/results/$3
202 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
203 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
204 for ii in $PTRACERS_NUM ; do
205 ptrfound=0
206 for jj in $ptr_mon ; do
207 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
208 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
209 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
210 done
211 if test $ptrfound = '1' ; then
212 eval "HAVE_PTR0"$ii"=t"
213 else
214 eval "HAVE_PTR0"$ii"=f"
215 if test "x$ADM" = x -a "x$OADM" = x; then
216 # remove this ptr from the list of output variable to check
217 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
218 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
219 fi
220 fi
221 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
222 done
223 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
224 if test $tst != 1 ; then
225 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
226 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
227 echo "==> WARNING: in checked list:" $listVar 1>&2
228 #- put it back once:
229 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
230 fi
231 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
232 echo "listVar='$listVar'" > $CDIR"/summary.txt"
233 allargs=""
234 for xx in $listVar
235 do
236 case $xx in
237 'PS') if [ $debug -gt 0 ]
238 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
239 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
240 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
241 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
242 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
243 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
244 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
245 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
246 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
247 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
248 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
249 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
250 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
251 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
252 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
253 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
254 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
255 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
256 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
257 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
258 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
259 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
260 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
261 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
262 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
263 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
264 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
265 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
266 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
267 'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
268 'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
269 'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
270 'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
271 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
272 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
273 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
274 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
275 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
276 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
277 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
278 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
279 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
280 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
281 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
282 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
283 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
284 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
285 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
286 esac
287 if test $xx = $sVar
288 then allargs="$allargs > $yy <"
289 else allargs="$allargs $yy"
290 fi
291 done
292
293 nbVar=`echo $listVar | awk '{print NF}'`
294 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
295 #-- fill line (up to standard length) with dot:
296 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
297 echo $allargs $adNul
298 else
299 echo $allargs
300 fi
301 # <-- same processing for adjoint & forward test
302 }
303
304 genmakemodel()
305 {
306 # genmakemodel directory
307 if test "x$NOGENMAKE" = xt ; then
308 echo "genmake skipped!"
309 else
310 if test "x$BASH" = x ; then
311 GENMAKE2="../../../tools/genmake2"
312 else
313 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
314 fi
315 (
316 cd $1;
317 command="$GENMAKE2 -ds -m $MAKE"
318 if test "x$ADM" = xt ; then
319 command="$command --mods=../code_ad"
320 elif test "x$OADM" = xt ; then
321 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
322 else
323 command="$command -mods=../code"
324 fi
325 if test "x$OPTFILE" != xNONE ; then
326 command="$command -optfile=$OPTFILE"
327 fi
328 if test "x$IEEE" != x ; then
329 command="$command -ieee"
330 fi
331 if test "x$GSL" = xt ; then
332 command="$command -gsl"
333 fi
334 if test "x$MPI" = xt ; then
335 command="$command -mpi"
336 fi
337 if test "x$MULTI_THREAD" = xt ; then
338 #- run multi-threaded using OpenMP:
339 command="$command -omp"
340 fi
341 if test "x$TS" = xt ; then
342 command="$command -ts"
343 fi
344 if test "x$PAPIS" = xt ; then
345 command="$command -papis"
346 else
347 if test "x$PCLS" = xt ; then
348 command="$command -pcls"
349 fi
350 fi
351 printf 'genmake ... ' 1>&2
352 # $command > make.log 2>&1
353 eval $command > make.log 2>&1
354 RETVAL=$?
355 # Reduce the size of the testing emails!
356 head -100 Makefile > $CDIR/Makefile_head
357 if test "x$RETVAL" != x0 ; then
358 tail make.log
359 echo "genmakemodel: genmake failed" 1>&2
360 cp genmake_* make.log $CDIR
361 return 1
362 else
363 echo "successful" 1>&2
364 fi
365 )
366 fi
367 }
368
369 makeclean()
370 {
371 # makeclean directory
372 if test "x$NOCLEAN" = xt ; then
373 echo "make Clean skipped!"
374 else
375 (
376 cd $1;
377 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
378 if test -r Makefile ; then
379 printf 'clean build-dir: make Clean ... ' 2>&1
380 $MAKE Clean >> make.log 2>&1
381 RETVAL=$?
382 if test "x$RETVAL" != x0 ; then
383 tail make.log
384 echo "makeclean: \"make Clean\" failed" 1>&2
385 cp make.log $CDIR"/make.log"
386 return 1
387 fi
388 fi
389 echo successful 1>&2
390 exit 0
391 )
392 fi
393 }
394
395 run_clean()
396 {
397 # run_clean directory
398 if test "x$NOCLEAN" = xt ; then
399 echo "run_clean skipped!"
400 else
401 (
402 cd $1;
403 printf 'clean run-dir ... ' 2>&1
404 # part of what is done after "make clean" when doing "make CLEAN"
405 find . -name "*.meta" -exec rm {} \;
406 find . -name "*.data" -exec rm {} \;
407 find . -name "fort.*" -exec rm {} \;
408 find . -type l -exec rm {} \;
409 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
410 rm -rf mnc_test_*
411 rm -f *_MIT_CE_000.opt0000 costfunction*0000
412 echo successful 1>&2
413 exit 0
414 )
415 fi
416 }
417
418 makedependmodel()
419 {
420 # makedependmodel directory
421 if test "x$NODEPEND" = xt ; then
422 echo "make depend skipped!"
423 else
424 (
425 cd $1;
426 printf 'make depend ... ' 1>&2
427 $MAKE depend >> make.log 2>&1
428 RETVAL=$?
429 if test "x$RETVAL" != x0 ; then
430 tail make.log
431 echo "makedependmodel: make depend failed" 1>&2
432 cp make.log $CDIR"/make.log"
433 return 1
434 else
435 echo successful 1>&2
436 fi
437 )
438 fi
439 }
440
441 makemodel()
442 {
443 # makemodel directory
444 (
445 cd $1;
446 if test -r Makefile ; then
447 printf 'make ... ' 1>&2
448 if test "x$ADM" = xt ; then
449 $MAKE adall >> make.log 2>&1
450 elif test "x$OADM" = xt ; then
451 $MAKE adAll >> make.log 2>&1
452 else
453 if test "x$JOBS" = x ; then
454 $MAKE >> make.log 2>&1
455 else
456 $MAKE -j $JOBS >> make.log 2>&1
457 fi
458 fi
459 RETVAL=$?
460 if test "x$RETVAL" != x0 ; then
461 tail make.log
462 echo failed 1>&2
463 cp make.log $CDIR"/make.log"
464 return 1
465 else
466 echo successful 1>&2
467 fi
468 fi
469 )
470 }
471
472 symlink_mpifiles()
473 {
474 # Put special links so that MPI specific files are used
475 # This MUST be invoked between makeclean and makelinks because
476 # the Makefile will link to non-mpi files by default
477
478 dir=$1
479 code_dir=$2
480 BUILD_DIR=$dir/$3
481 CODE_DIR=$dir/$code_dir
482
483 # These are files that should replace their counter-part when using -mpi
484 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
485
486 # Is this an MPI run?
487 if test "x$MPI" = xt ; then
488 # YES: We symbolically link these files to the build
489 # dir so long as there is no real file in place
490 for ii in $MPI_FILES ; do
491 i=`echo $ii | sed 's:^\./::'`
492 name=`echo $i | sed 's:_mpi::' `
493 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
494 RETVAL=$?
495 if test "x$RETVAL" != x0 ; then
496 if ! test -f $BUILD_DIR/$i ; then
497 #echo Linking $name to $i
498 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
499 fi
500 fi
501 done
502 else
503 # NO: We undo any _mpi symbolically linked files
504 for ii in $MPI_FILES ; do
505 i=`echo $ii | sed 's:^\./::'`
506 name=`echo $i | sed 's:_mpi::' `
507 if test -L $BUILD_DIR/$name ; then
508 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
509 RETVAL=$?
510 if test "x$RETVAL" = x0 ; then
511 #echo Un-linking $name from $linktarg
512 rm -f $BUILD_DIR/$name
513 fi
514 fi
515 done
516 fi
517
518 }
519
520 linkdata()
521 {
522 # linkdata run_dir input_dir_1 input_dir_2 ...
523 #
524 # symbolically link data files to run directory
525 if test -d $1 ; then
526 (
527 cd $1 ; shift
528 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
529 for xx in $inpMPI ; do
530 if test -r "../"$1"/"$xx ; then
531 # found 1 _mpi sfx file in 1rst input dir and it is readable
532 yy=`echo $xx | sed 's:\.mpi$::'`
533 if test "x$MPI" = "xt" ; then
534 # mpi test: remove symbolic link & link _mpi sfx file
535 if test -h $yy ; then rm -f $yy ; fi
536 if test ! -r $yy ; then
537 ln -sf "../"$1"/"$xx $yy ;
538 printf "$xx " 1>&2
539 fi
540 else
541 # not mpi test: remove symbolic link
542 if test -h $yy ; then rm -f $yy ; fi
543 fi
544 fi
545 done
546 if test -r "../"$1"/eedata.mth" ; then
547 # found eedata.mth in 1rst input dir and it is readable
548 if test "x$MULTI_THREAD" = "xt" ; then
549 # multi-threaded test: remove symbolic link & link eedata.mth
550 if test -h eedata ; then rm -f eedata ; fi
551 if test ! -r eedata ; then
552 ln -sf "../"$1"/eedata.mth" eedata ;
553 printf 'eedata.mth ' 1>&2
554 fi
555 else
556 # not multi-threaded test: remove eedata symbolic link
557 if test -h eedata ; then rm -f eedata ; fi
558 fi
559 fi
560 prevDir='NONE'
561 for ldir in $* ; do
562 if test -d "../"$ldir -a $ldir != $prevDir ; then
563 printf 'ldir='${ldir} 1>&2
564 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
565 for i in $files ; do
566 if test ! -d "../"$ldir/$i ; then
567 if test ! -r $i ; then
568 printf ' '$i 1>&2
569 ln -sf "../"$ldir"/"$i $i
570 fi
571 fi
572 done
573 if test -x "../"$ldir"/"prepare_run ; then
574 "../"$ldir"/"prepare_run
575 fi
576 printf ' ; ' 1>&2
577 fi
578 prevDir=$ldir
579 done
580 )
581 fi
582 }
583
584 runmodel()
585 {
586 # runmodel directory
587 #
588 # runs "$COMMAND in "directory"
589 # (where "$COMMAND" is relative to "directory")
590 (
591 cd $1
592 printf 'runmodel in %s ...' $1 1>&2
593 # make output.txt
594 echo
595 if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
596 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
597 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
598 fi
599 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
600 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
601 ln -sf "../"$builddir"/"$EXECUTABLE .
602 fi
603 if test ! -x $EXECUTABLE ; then
604 rm -f $RUNLOG ; touch $RUNLOG
605 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
606 echo " no executable:" $EXECUTABLE >> $RUNLOG
607 RETVAL=8
608 ENDVAL=-1
609 else
610 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
611 # output do not exist or is older than executable:
612 rm -f $RUNLOG ; touch $RUNLOG
613 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
614 ( eval $COMMAND ) >> $RUNLOG 2>&1
615 RETVAL=$?
616 else
617 RETVAL=0
618 if test -f $RUNLOG ; then
619 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
620 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
621 else
622 touch $RUNLOG
623 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
624 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
625 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
626 fi
627 fi
628 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
629 fi
630 rm -f run.log_tmp
631 #if test "x$RETVAL" = x0 ; then
632 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
633 tail $RUNLOG
634 echo successful 1>&2
635 # === Reduce the size of the testing emails!
636 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
637 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
638 return 0
639 else
640 tail $RUNLOG
641 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
642 cp $RUNLOG $CDIR"/"$RUNLOG
643 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
644 return 1
645 fi
646 )
647 }
648
649 createcodelet()
650 {
651 # create codelet for comparing model output
652
653 printf "creating the comparison code (using CC=$CC)... "
654 cat > tr_cmpnum.c <<EOF
655 #include <stdio.h>
656 #include <math.h>
657 int main( int argc, char** argv ) {
658 int linnum,cmplin,best,lncnt;
659 double a,b,abave,relerr;
660 best = -22;
661 lncnt = 0;
662 while( 1 & ( (lncnt+=1) < 999 ) ) {
663 scanf("%d", &linnum);
664 if (linnum == -1) break;
665 scanf("%lf", &a); scanf("%lf", &b);
666 abave = 0.5*(fabs(a)+fabs(b));
667 if ( abave == abave ) {
668 if (abave > 0.0) {
669 relerr=fabs(a-b)/abave;
670 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
671 else { cmplin = -16 ; }
672 best = (best > cmplin) ? best : cmplin; }
673 else { cmplin = -22 ; }
674 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
675 }
676 else {
677 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
678 break; }
679 }
680 if (lncnt == 999) best=-29;
681 if (linnum != -1) best=-99;
682 printf("%d\n", -best);
683 return 0;
684 }
685 EOF
686 $CC -o tr_cmpnum tr_cmpnum.c -lm
687
688 if [ -x ./tr_cmpnum ]; then
689 echo "OK"
690 return 0
691 else
692 echo
693 echo "ERROR: failed to compile comparison code -- please specify"
694 echo " a C compiler using the CC environment variable."
695 exit 1
696 fi
697 }
698
699 formatresults()
700 {
701 # formatresults expt genmake depend make run results*
702
703 nm=$1
704 printf '%s %s %s %s' $2 $3 $4 $5
705 shift; shift; shift; shift; shift;
706 listPrt=$@
707 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
708 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
709 printf '%3s' $listPrt
710 # line below does not work on hp-ux_ia64 : do those substitutions later on
711 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
712
713 if [ $xx = '..' ]; then
714 printf ' N/O '
715 elif [ $xx = '--' ]; then
716 printf ' N/O '
717 elif [ $xx = 99 ]; then
718 printf ' N/O '
719 else
720 if [ $xx -ge $MATCH_CRIT ]; then
721 printf ' pass'
722 else
723 printf ' FAIL'
724 fi
725 fi
726 printf ' %s' $nm
727 printf '\n'
728
729 }
730
731 scandirs()
732 {
733 if [ $# -eq 1 ]; then
734 for arg in * ; do
735 test -f $arg/$1 && echo $arg
736 done
737 else
738 echo $*
739 fi
740 }
741
742
743 check_eedata()
744 {
745 # check_eedata size.h eedata
746 if [ $# -eq 2 ] ; then
747 if test -f $1 -a -f $2 ; then
748 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
749 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
750 if test "x$nx" = x ; then
751 rx=10
752 else
753 rx=`expr $sx % $nx`
754 fi
755 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
756 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
757 if test "x$ny" = x ; then
758 ry=20
759 else
760 ry=`expr $sy % $ny`
761 fi
762 echo `expr $rx + $ry`
763 else
764 echo '-1'
765 fi
766 else
767 echo '-2'
768 fi
769
770 }
771
772 ###############################################################################
773
774
775 # Default properties
776 debug=0
777 verbose=1
778 clean=0
779
780 IEEE=true
781 if test "x$MITGCM_IEEE" != x ; then
782 IEEE=$MITGCM_IEEE
783 fi
784 GSL=f
785
786 CLEANUP=f
787 QUICK=f
788 NOGENMAKE=f
789 NOCLEAN=f
790 NODEPEND=f
791 POSTCLEAN=f
792
793 BASH=
794 OPTFILE=NONE
795 ADDRESSES=
796 TESTDIRS=
797 SKIPDIRS=
798 MPACKDIR="../tools/mpack-1.6"
799 HAVE_MPACK=
800 MPACK=
801 COMMAND=
802 if test "x$MAKE" = x ; then
803 MAKE=make
804 fi
805 if test "x$CC" = x ; then
806 CC=cc
807 fi
808 JOBS=
809 MPI=f
810 MULTI_THREAD=f
811 OUTDIR=
812 DELDIR=
813
814 ADM=
815 OADM=
816
817 # list of pTracers to check for monitor output
818 PTRACERS_NUM="1 2 3 4 5"
819
820 MATCH_CRIT=13
821
822 printf "parsing options... "
823
824 ac_prev=
825 for ac_option ; do
826
827 # If the previous option needs an argument, assign it.
828 if test -n "$ac_prev"; then
829 eval "$ac_prev=\$ac_option"
830 ac_prev=
831 continue
832 fi
833
834 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
835
836 case $ac_option in
837
838 -help | --help | -h | --h)
839 usage ;;
840
841 -optfile | --optfile | -of | --of)
842 ac_prev=OPTFILE ;;
843 -optfile=* | --optfile=* | -of=* | --of=*)
844 OPTFILE=$ac_optarg ;;
845
846 -addr | --addr | -a | --a)
847 ac_prev=ADDRESSES ;;
848 -addr=* | --addr=*)
849 ADDRESSES=$ac_optarg ;;
850 -mpackdir | --mpackdir | -mpd | --mpd)
851 ac_prev=MPACKDIR ;;
852 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
853 MPACKDIR=$ac_optarg ;;
854
855 -tdir | --tdir | -t | --t)
856 ac_prev=TESTDIRS ;;
857 -tdir=* | --tdir=*)
858 TESTDIRS=$ac_optarg ;;
859
860 -skipdir | --skipdir | -skd | --skd)
861 ac_prev=SKIPDIRS ;;
862 -skipdir=* | --skipdir=*)
863 SKIPDIRS=$ac_optarg ;;
864
865 -bash | --bash | -b | --b)
866 ac_prev=BASH ;;
867 -bash=* | --bash=*)
868 BASH=$ac_optarg ;;
869
870 -command | --command | -c | --c)
871 ac_prev=COMMAND ;;
872 -command=* | --command=*)
873 COMMAND=$ac_optarg ;;
874
875 -make | --make | -m | --m)
876 ac_prev=MAKE ;;
877 -make=* | --make=*)
878 MAKE=$ac_optarg ;;
879
880 -odir | --odir)
881 ac_prev=OUTDIR ;;
882 -odir=* | --odir=*)
883 OUTDIR=$ac_optarg ;;
884
885 -ptracers | --ptracers | -ptr | --ptr)
886 ac_prev=PTRACERS_NUM ;;
887 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
888 PTRACERS_NUM=$ac_optarg ;;
889
890 -match | --match ) ac_prev=MATCH_CRIT ;;
891 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
892
893 -j) ac_prev=JOBS ;;
894 -j=*) JOBS=$ac_optarg ;;
895
896 -clean | --clean)
897 CLEANUP=t ; DELDIR=t ;;
898
899 -quick | --quick | -q | --q)
900 QUICK=t ;;
901 -nogenmake | --nogenmake | -ng | --ng)
902 NOGENMAKE=t ;;
903 -noclean | --noclean | -nc | --nc)
904 NOCLEAN=t ;;
905 -nodepend | --nodepend | -nd | --nd)
906 NODEPEND=t ;;
907
908 -postclean | --postclean | -pc | --pc)
909 POSTCLEAN=t ;;
910
911 -mpi) MPI=t ;;
912
913 -mth) MULTI_THREAD=t ;;
914
915 -adm | -ad) ADM=t ;;
916
917 -oad) OADM=t; NODEPEND=t ;;
918
919 -ieee) IEEE=true ;;
920 -noieee) IEEE= ;;
921 -gsl) GSL=t ;;
922
923 -verbose) verbose=2 ;;
924 -debug) debug=1 ;;
925 -quiet) verbose=0 ;;
926
927 -deldir | -dd) DELDIR=t ;;
928
929 -ts) TS=t;;
930
931 -papis) PAPIS=t;;
932
933 -pcls) PCL=t;;
934
935 -*)
936 echo "Error: unrecognized option: "$ac_option
937 usage
938 ;;
939
940 *)
941 echo "Error: unrecognized argument: "$ac_option
942 usage
943 ;;
944
945 esac
946
947 done
948
949 if test "x$QUICK" = xt ; then
950 NOGENMAKE=t
951 NOCLEAN=t
952 NODEPEND=t
953 fi
954
955 #- setting for forward or ADM testing
956 if test "x$ADM" = xt ; then
957 code_dir=code_ad
958 inputdir=input_ad
959 ref_outp="output_adm.txt"
960 EXECUTABLE="mitgcmuv_ad"
961 elif test "x$OADM" = xt ; then
962 code_dir=code_oad
963 inputdir=input_oad
964 ref_outp="output_oadm.txt"
965 EXECUTABLE="mitgcmuv_ad"
966 else
967 code_dir=code
968 inputdir=input
969 ref_outp="output.txt"
970 EXECUTABLE="mitgcmuv"
971 fi
972
973 if test "x$TESTDIRS" = x ; then
974 LIST=`scandirs results/$ref_outp`
975 else
976 #- expand group of experiments:
977 LIST=" "
978 for xx in $TESTDIRS
979 do
980 case $xx in
981 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
982 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
983 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
984 ;;
985 'tutorials')
986 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
987 *) LIST=${LIST}" "$xx ;;
988 esac
989 done
990 fi
991 #echo 'LIST='${LIST}'<'
992 #- skip dirs, remove duplicate and non-directory:
993 TESTDIRS=" "
994 count=0
995 for xx in $LIST
996 do
997 yy=`echo $SKIPDIRS | grep -c $xx`
998 if test $yy = 0 ; then
999 if test -d $xx ; then
1000 yy=`echo $TESTDIRS | grep -c $xx`
1001 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1002 else count=1 ;
1003 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1004 fi
1005 else
1006 if test $count = 1 ; then echo -n ", \"$xx\""
1007 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1008 fi
1009 fi
1010 done
1011 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1012 #echo 'TESTDIRS='${TESTDIRS}'<'
1013
1014 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1015 OPTFILE=$MITGCM_OF
1016 fi
1017
1018 RUNLOG="run.log"
1019 OUTPUTFILE=$ref_outp
1020 if test "x$COMMAND" = x ; then
1021 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1022 fi
1023 if test "x$MPI" = xt ; then
1024 OUTPUTFILE="STDOUT.0000"
1025 fi
1026
1027 echo "OK (COMMAND= $COMMAND )"
1028
1029 # set the Default List of output variables to be checked:
1030 # (use default or load experiment-specific list from file "tr_checklist")
1031 # content : 1rst = main variable used to decide if it pass or FAIL
1032 # others = number of matching digits to be printed in summary.txt
1033 if test "x$ADM" = x -a "x$OADM" = x; then
1034 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1035 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1036 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1037 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1038 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1039 else
1040 DEF_CHECK_LIST='Grad Cost Grad'
1041 EMPTY_RESULTS='.. ..'
1042 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1043 fi
1044
1045 # create the FORTRAN comparison code
1046 createcodelet
1047
1048 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1049 if test "x$ADDRESSES" = x ; then
1050 echo "skipping mpack build"
1051 else
1052 build_mpack
1053 fi
1054
1055 # Create a uniquely named directory to store results
1056 CMDLINE=$0
1057 for xx in "$@" ; do nw=`echo $xx | wc -w`
1058 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1059 else CMDLINE="$CMDLINE '$xx'" ; fi
1060 done
1061 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1062 MACH=`hostname`
1063 UNAMEA=`uname -a`
1064 DATE=`date +%Y%m%d`
1065 BASE="tr_"$MACH"_"$DATE"_"
1066 if test "x$OUTDIR" != x ; then
1067 BASE="tr_"$OUTDIR"_"$DATE"_"
1068 else
1069 short_name=`hostname | sed 's/\..*$//'`
1070 BASE="tr_"$short_name"_"$DATE"_"
1071 fi
1072 DNUM=0
1073 DRESULTS="$BASE$DNUM"
1074 while test -e $DRESULTS ; do
1075 DNUM=$(( $DNUM + 1 ))
1076 DRESULTS="$BASE$DNUM"
1077 done
1078 mkdir $DRESULTS
1079 RETVAL=$?
1080 if test "x$RETVAL" != x0 ; then
1081 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1082 exit 1
1083 fi
1084 SUMMARY="$DRESULTS/summary.txt"
1085 start_date=`date`
1086 echo $start_date > $SUMMARY
1087 echo 'run:' $CMDLINE >> $SUMMARY
1088 echo 'on :' $UNAMEA >> $SUMMARY
1089
1090 of_path=
1091 if test "x$OPTFILE" != xNONE ; then
1092 if test -r $OPTFILE ; then
1093 # get the path
1094 path=${OPTFILE%/*}
1095 if test "x$path" = x ; then
1096 of_path=`pwd`
1097 else
1098 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1099 fi
1100 file=${OPTFILE##*/}
1101 OPTFILE=$of_path/$file
1102 cp $OPTFILE $DRESULTS
1103 echo >> $SUMMARY
1104 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1105 else
1106 echo | tee $SUMMARY
1107 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1108 exit 1
1109 fi
1110 else
1111 echo >> $SUMMARY
1112 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1113 echo " so the genmake default will be used." >> $SUMMARY
1114 fi
1115 echo
1116 echo >> $SUMMARY
1117 if test "x$ADM" = x -a "x$OADM" = x; then
1118 if [ $MATCH_CRIT -lt 10 ] ;
1119 then line_0="default "$MATCH_CRIT ;
1120 else line_0="default "$MATCH_CRIT ; fi
1121 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1122 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1123 line_1="G D M c m s m s m s m s"
1124 line_2="E p a R g m m e . m m e . m m e . m m e ."
1125 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1126 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1127 for ii in $PTRACERS_NUM ; do
1128 line_0="$line_0 --PTR 0"$ii"--"
1129 line_1="$line_1 m s"
1130 line_2="$line_2 m m e ."
1131 line_3="$line_3 i a a d"
1132 line_4="$line_4 n x n ."
1133 done
1134 echo "$line_0" | tee -a $SUMMARY
1135 echo "$line_1" | tee -a $SUMMARY
1136 echo "$line_2" | tee -a $SUMMARY
1137 echo "$line_3" | tee -a $SUMMARY
1138 echo "$line_4" | tee -a $SUMMARY
1139 echo " " | tee -a $SUMMARY
1140 else
1141 echo "ADJOINT=true" >> $SUMMARY
1142 echo >> $SUMMARY
1143 if [ $MATCH_CRIT -lt 10 ] ;
1144 then line_0="default "$MATCH_CRIT ;
1145 else line_0="default "$MATCH_CRIT ; fi
1146 echo "$line_0" | tee -a $SUMMARY
1147 cat << EOF | tee -a $SUMMARY
1148 G D M C G
1149 E p a R o r
1150 N n k u s a
1151 2 d e n t d
1152
1153 EOF
1154 fi
1155
1156 # ...and each test directory...
1157 for dir in $TESTDIRS ; do
1158
1159 # set builddir & rundir:
1160 builddir="build"
1161 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1162 rundir="run"
1163 if test ! -d $dir/$rundir ; then
1164 rundir=$builddir
1165 fi
1166 CODE_DIR=$dir/$code_dir
1167 BUILD_DIR=$dir/$builddir
1168
1169 # Cleanup only!
1170 if test "x$CLEANUP" = xt ; then
1171 if test -r $BUILD_DIR/Makefile ; then
1172 echo ' ------ clean dir:' $dir/$builddir
1173 ( cd $BUILD_DIR ; make CLEAN )
1174 fi
1175 if test -d $dir/$rundir/CVS ; then
1176 echo ' ------ clean dir:' $dir/$rundir
1177 run_clean $dir/$rundir
1178 fi
1179 (
1180 cd $dir
1181 rm -rf tr_run.*
1182 )
1183 continue
1184 fi
1185
1186 # Verify that the testdir exists and contains previous
1187 # results in the correct location--or skip this directory!
1188 fout=$dir"/results/"$ref_outp
1189 if test ! -r $fout ; then
1190 echo "can't read \"$fout\" -- skipping $dir"
1191 continue
1192 fi
1193
1194 # Check for specific files for particular type of run
1195
1196 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1197 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1198 continue
1199 fi
1200 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1201 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1202 continue
1203 fi
1204 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1205 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1206 if test $retv != 0 ; then
1207 echo "input/eedata.mth tiling misfit -- skipping $dir"
1208 continue
1209 fi
1210 fi
1211
1212 # Check whether there are "extra runs" for this testdir
1213 extra_runs=
1214 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1215 #echo "ex_run_dirs='$ex_run_dirs'"
1216 for exd in $ex_run_dirs ; do
1217 name=`echo $exd | sed -e "s/$inputdir\.//"`
1218 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1219 outf="$dir/results/$refExOut"
1220 if test -f $outf -a -r $outf ; then
1221 if test "x$MULTI_THREAD" = "xt" ; then
1222 if test -r $dir"/"$exd"/eedata.mth" ; then
1223 if test "x$MPI" = "xt" ; then
1224 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1225 if test $retv = 0 ; then
1226 extra_runs="$extra_runs $name"
1227 else
1228 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1229 fi
1230 else
1231 extra_runs="$extra_runs $name"
1232 fi
1233 #else echo $dir"/"$exd"/eedata.mth: not found"
1234 fi
1235 else
1236 extra_runs="$extra_runs $name"
1237 fi
1238 fi
1239 done
1240
1241 echo "-------------------------------------------------------------------------------"
1242 echo
1243 if test "x$extra_runs" = "x" ; then
1244 echo "Experiment: $dir"
1245 else
1246 echo "Experiment: $dir ; extra_runs=$extra_runs"
1247 fi
1248 echo
1249 unset genmake makedepend make run
1250 results=$EMPTY_RESULTS
1251
1252 # Create an output dir for each OPTFILE/tdir combination
1253 rel_CDIR=$DRESULTS"/"$dir
1254 mkdir $rel_CDIR
1255 CDIR=`pwd`"/$rel_CDIR"
1256
1257 if test "x$CLEANUP" = xt ; then
1258 echo '====>>> this is to check that we never go through this part <<< ==='
1259 makeclean $dir/$builddir \
1260 && run_clean $dir/$rundir
1261 else
1262 genmakemodel $dir/$builddir && genmake=Y \
1263 && makeclean $dir/$builddir \
1264 && run_clean $dir/$rundir \
1265 && symlink_mpifiles $dir $code_dir $builddir \
1266 && makedependmodel $dir/$builddir && makedepend=Y \
1267 && makemodel $dir/$builddir && make=Y \
1268 && linkdata $dir/$rundir $inputdir input \
1269 && runmodel $dir/$rundir && run=Y \
1270 && results=`testoutput_run $dir $rundir $ref_outp`
1271 fi
1272
1273 echo
1274 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1275 echo
1276 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1277 touch $CDIR"/summary.txt"
1278 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1279 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1280 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1281 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1282 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1283 if test "x$ADM" = xt ; then
1284 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1285 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1286 >> $CDIR"/summary.txt"
1287 fi
1288
1289 for ex in $extra_runs ; do
1290 unset run
1291 results=$EMPTY_RESULTS
1292 # reference output file
1293 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1294 # Create an output dir for each OPTFILE/tdir.ex combination
1295 rel_CDIR=$DRESULTS"/"$dir"."$ex
1296 mkdir $rel_CDIR
1297 CDIR=`pwd`"/$rel_CDIR"
1298 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1299 run_clean $dir/tr_run.$ex
1300 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1301 runmodel $dir/tr_run.$ex && run=Y \
1302 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1303 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1304 fres="$fres.$ex"
1305 echo
1306 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1307 touch $CDIR"/summary.txt"
1308 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1309 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1310 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1311 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1312 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1313 if test "x$ADM" = xt ; then
1314 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1315 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1316 >> $CDIR"/summary.txt"
1317 fi
1318 if test "x$POSTCLEAN" = xt ; then
1319 run_clean $dir/tr_run.$ex
1320 fi
1321 done
1322
1323 #postclean $dir/$builddir
1324 if test "x$POSTCLEAN" = xt ; then
1325 makeclean $dir/$builddir \
1326 && run_clean $dir/$rundir
1327 fi
1328
1329 echo "-------------------------------------------------------------------------------"
1330
1331 done
1332
1333 printf "Start time: " >> $SUMMARY
1334 echo "$start_date" >> $SUMMARY
1335 printf "End time: " >> $SUMMARY
1336 date >> $SUMMARY
1337
1338 # If addresses were supplied and mpack built successfully, then try
1339 # to send email using mpack.
1340 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1341 echo "No results email was sent."
1342 else
1343 if test "x$HAVE_MPACK" = xt ; then
1344 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1345 && gzip $DRESULTS".tar" \
1346 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1347 RETVAL=$?
1348 if test "x$RETVAL" != x0 ; then
1349 echo
1350 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1351 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1352 echo " summary of results from the directory \"$DRESULTS\"."
1353 echo
1354 else
1355 echo
1356 echo "An email containing results was sent to the following addresses:"
1357 echo " \"$ADDRESSES\""
1358 echo
1359 fi
1360 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1361 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1362 fi
1363 fi
1364
1365 rm -f tr_cmpnum.c tr_cmpnum
1366
1367 if test "x$CLEANUP" != xt ; then
1368 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1369 if test -e tr_out.txt ; then
1370 mv tr_out.txt tr_out.txt.old
1371 fi
1372 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1373 fi
1374
1375 if test "x$DELDIR" = xt ; then
1376 rm -rf $DRESULTS
1377 fi

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