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Revision 1.123 - (show annotations) (download)
Thu Apr 16 18:46:59 2009 UTC (11 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.122: +50 -5 lines
mpi+mth: skip tests were number of tiles do not match

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.122 2009/04/15 22:22:36 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-of=|-optfile=)STRING list of optfiles to use"
20 echo " (-a|-addr) STRING list of email recipients"
21 echo " (DEF=\"\" no email is sent)"
22 echo " (-mpd|-mpackdir) DIR location of the mpack utility"
23 echo " (DEF=\"../tools/mpack-1.6\")"
24 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
25 echo " (recognized groups: basic, tutorials)"
26 echo " (DEF=\"\" which test all)"
27 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
28 echo " (DEF=\"\" which test all)"
29 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
30 echo " Bourne-compatible \"sh\" shell"
31 echo " (DEF=\"\" for \"bash\")"
32 echo " (-adm|-ad) perform an adjoint run"
33 echo " (-oad) perform an OpenAD adjoint run"
34 echo " (-command) STRING command to run"
35 echo " (DEF=\"make output.txt\")"
36 echo " (-m|-make) STRING command to use for \"make\""
37 echo " (DEF=\"make\")"
38 echo " (-odir) STRING used to build output directory name"
39 echo " (DEF=\"hostname\")"
40 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
41 echo " (DEF=\"1 2 3 4 5\")"
42 echo " (-match) NUMBER Matching Criteria (number of digits)"
43 echo " (DEF=\"12\")"
44 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
45 echo " (-clean) *ONLY* run \"make CLEAN\""
46 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
47 echo " (-nogenmake|-ng) skip the genmake stage"
48 echo " (-noclean|-nc) skip the \"make clean\" stage"
49 echo " (-nodepend|-nd) skip the \"make depend\" stage"
50 echo " (-deldir|-dd) on success, delete the output directory"
51 echo " (-ts) provide timing information per timestep"
52 echo " (-papis) provide MFlop/s per timestep using PAPI"
53 echo " (-pcls) provide MFlop/s per timestep using PCL"
54 echo
55 echo "and where STRING can be a whitespace-delimited list"
56 echo "such as:"
57 echo
58 echo " -t 'exp0 exp2 exp3' "
59 echo " -addr='abc@123.com testing@home.org'"
60 echo
61 echo "provided that the expression is properly quoted within the current"
62 echo "shell (note the use of single quotes to protect white space)."
63 echo
64 exit 1
65 }
66
67 # build the mpack utility
68 build_mpack()
69 {
70 printf "building the mpack utility... "
71 MPACK="$MPACKDIR/mpack"
72 if test ! -x $MPACK ; then
73 if test ! -d $MPACKDIR ; then
74 echo
75 echo "Error: can't find \"$MPACKDIR\""
76 echo " are you sure this program is being run in the correct "
77 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
78 echo
79 HAVE_MPACK=f
80 fi
81 if test "x$CC" = x ; then
82 export CC=cc
83 fi
84 printf "building mpack (using CC=$CC)... "
85 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
86 RETVAL=$?
87 if test "x$RETVAL" != x0 ; then
88 echo
89 echo "Error building the mpack tools at: $MPACK_DIR"
90 echo
91 HAVE_MPACK=f
92 else
93 rm -f tr_build_mpack.out
94 HAVE_MPACK=t
95 echo "done"
96 fi
97 else
98 HAVE_MPACK=t
99 echo "already exist"
100 fi
101 }
102
103 testoutput_var()
104 {
105 # testoutput_var dir s1 label subdir reference_output
106 #
107 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
108 # with same output from reference file $dir/results/$reference_output
109 # using search strings s1 and text label
110
111 if [ $debug -gt 0 ]; then
112 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
113 fi
114 if [ -r $1/$4/$OUTPUTFILE ]; then
115 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
116 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
117 if [ $lncntA -lt 2 ]; then
118 if [ $verbose -gt 0 ]; then
119 echo Not enough lines of output when searching for "$2" 1>&2
120 fi
121 return 99
122 fi
123 else
124 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
125 return 99
126 fi
127 if [ $debug -gt 0 ]; then
128 echo testoutput_var: grep "$2" $1/results/$5 1>&2
129 fi
130 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
131 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
132 if [ $lncntB -lt 2 ]; then
133 if [ $verbose -gt 0 ]; then
134 echo Not enough lines of output when searching for "$2" 1>&2
135 fi
136 return 99
137 fi
138 if [ $lncntA -ne $lncntB ]; then
139 if [ $verbose -gt 0 ]; then
140 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
141 fi
142 return 99
143 fi
144 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
145 if [ $has_nan -gt 0 ] ; then
146 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
147 return 99
148 fi
149 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
150 if [ $has_inf -gt 0 ] ; then
151 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
152 return 99
153 fi
154 if [ $debug -gt 0 ]; then
155 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
156 fi
157 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
158 if [ $debug -gt 0 ]; then
159 echo testoutput_var: compare_lines 1>&2
160 fi
161 if [ $verbose -gt 1 ]; then
162 cat tmp3.txt 1>&2
163 fi
164 echo "-1" >> tmp3.txt
165 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
166 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
167 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
168 if [ $digits_of_similarity -eq 99 ]; then
169 if [ $verbose -gt 0 ]; then
170 echo testoutput_var: No comparison was available for \"$3\" 1>&2
171 fi
172 digits_of_similarity=99
173 else
174 if [ $verbose -gt 0 ]; then
175 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
176 fi
177 fi
178 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
179
180 return $digits_of_similarity
181 }
182
183 testoutput_run()
184 {
185 # testoutput_run directory subdir reference_output
186 #
187 # test output from 1 run in "directory"
188 # --> same processing for adjoint & forward test
189 # default list of output variables to be checked:
190 # 1rst : main variable used to decide if it pass or FAIL
191 # others : number of matching digits to be printed in summary.txt
192 listChk=$DEF_CHECK_LIST
193 # load experiment-specific list from file "tr_checklist" (if it exist)
194 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
195 sVar=`echo $listChk | awk '{print $1}'`
196 # remove 1rst var and expand the list: + => min max mean s.d
197 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
198 | sed 's/+//g' | sed "s/^$sVar//"`
199 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
200 # check for ptracer output in reference_output file :
201 outpref=$1/results/$3
202 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
203 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
204 for ii in $PTRACERS_NUM ; do
205 ptrfound=0
206 for jj in $ptr_mon ; do
207 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
208 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
209 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
210 done
211 if test $ptrfound = '1' ; then
212 eval "HAVE_PTR0"$ii"=t"
213 else
214 eval "HAVE_PTR0"$ii"=f"
215 if test "x$ADM" = x -a "x$OADM" = x; then
216 # remove this ptr from the list of output variable to check
217 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
218 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
219 fi
220 fi
221 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
222 done
223 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
224 if test $tst != 1 ; then
225 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
226 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
227 echo "==> WARNING: in checked list:" $listVar 1>&2
228 #- put it back once:
229 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
230 fi
231 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
232 echo "listVar='$listVar'" > $CDIR"/summary.txt"
233 allargs=""
234 for xx in $listVar
235 do
236 case $xx in
237 'PS') if [ $debug -gt 0 ]
238 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
239 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
240 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
241 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
242 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
243 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
244 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
245 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
246 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
247 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
248 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
249 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
250 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
251 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
252 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
253 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
254 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
255 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
256 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
257 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
258 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
259 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
260 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
261 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
262 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
263 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
264 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
265 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
266 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
267 'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
268 'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
269 'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
270 'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
271 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
272 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
273 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
274 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
275 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
276 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;;
277 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;;
278 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;;
279 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
280 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
281 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
282 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
283 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
284 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
285 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
286 esac
287 if test $xx = $sVar
288 then allargs="$allargs > $yy <"
289 else allargs="$allargs $yy"
290 fi
291 done
292
293 nbVar=`echo $listVar | awk '{print NF}'`
294 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
295 #-- fill line (up to standard length) with dot:
296 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
297 echo $allargs $adNul
298 else
299 echo $allargs
300 fi
301 # <-- same processing for adjoint & forward test
302 }
303
304 genmakemodel()
305 {
306 # genmakemodel directory
307 if test "x$NOGENMAKE" = xt ; then
308 echo "genmake skipped!"
309 else
310 if test "x$BASH" = x ; then
311 GENMAKE2="../../../tools/genmake2"
312 else
313 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
314 fi
315 (
316 cd $1;
317 command="$GENMAKE2 -ds -m $MAKE"
318 if test "x$ADM" = xt ; then
319 command="$command --mods=../code_ad"
320 elif test "x$OADM" = xt ; then
321 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
322 else
323 command="$command --mods=../code"
324 fi
325 if test "x$OPTFILE" != xNONE ; then
326 command="$command --optfile=$OPTFILE"
327 fi
328 if test "x$IEEE" != x ; then
329 command="$command -ieee"
330 fi
331 if test "x$GSL" = xt ; then
332 command="$command -gsl"
333 fi
334 if test "x$MPI" = xt ; then
335 command="$command -mpi"
336 fi
337 if test "x$MULTI_THREAD" = xt ; then
338 #- run multi-threaded using OpenMP:
339 command="$command -omp"
340 fi
341 if test "x$TS" = xt ; then
342 command="$command -ts"
343 fi
344 if test "x$PAPIS" = xt ; then
345 command="$command -papis"
346 else
347 if test "x$PCLS" = xt ; then
348 command="$command -pcls"
349 fi
350 fi
351 printf 'genmake ... ' 1>&2
352 # $command > make.log 2>&1
353 eval $command > make.log 2>&1
354 RETVAL=$?
355 # Reduce the size of the testing emails!
356 head -100 Makefile > $CDIR/Makefile_head
357 if test "x$RETVAL" != x0 ; then
358 tail make.log
359 echo "genmakemodel: genmake failed" 1>&2
360 cp genmake_* make.log $CDIR
361 return 1
362 else
363 echo "successful" 1>&2
364 fi
365 )
366 fi
367 }
368
369 makeclean()
370 {
371 # makeclean directory
372 if test "x$NOCLEAN" = xt ; then
373 echo "make Clean skipped!"
374 else
375 (
376 cd $1;
377 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
378 if test -r Makefile ; then
379 printf 'clean build-dir: make Clean ... ' 2>&1
380 $MAKE Clean >> make.log 2>&1
381 RETVAL=$?
382 if test "x$RETVAL" != x0 ; then
383 tail make.log
384 echo "makeclean: \"make Clean\" failed" 1>&2
385 cp make.log $CDIR"/make.log"
386 return 1
387 fi
388 fi
389 echo successful 1>&2
390 exit 0
391 )
392 fi
393 }
394
395 run_clean()
396 {
397 # run_clean directory
398 if test "x$NOCLEAN" = xt ; then
399 echo "run_clean skipped!"
400 else
401 (
402 cd $1;
403 printf 'clean run-dir ... ' 2>&1
404 # part of what is done after "make clean" when doing "make CLEAN"
405 find . -name "*.meta" -exec rm {} \;
406 find . -name "*.data" -exec rm {} \;
407 find . -name "fort.*" -exec rm {} \;
408 find . -type l -exec rm {} \;
409 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
410 rm -rf mnc_test_*
411 rm -f *_MIT_CE_000.opt0000 costfunction*0000
412 echo successful 1>&2
413 exit 0
414 )
415 fi
416 }
417
418 makedependmodel()
419 {
420 # makedependmodel directory
421 if test "x$NODEPEND" = xt ; then
422 echo "make depend skipped!"
423 else
424 (
425 cd $1;
426 printf 'make depend ... ' 1>&2
427 $MAKE depend >> make.log 2>&1
428 RETVAL=$?
429 if test "x$RETVAL" != x0 ; then
430 tail make.log
431 echo "makedependmodel: make depend failed" 1>&2
432 cp make.log $CDIR"/make.log"
433 return 1
434 else
435 echo successful 1>&2
436 fi
437 )
438 fi
439 }
440
441 makemodel()
442 {
443 # makemodel directory
444 (
445 cd $1;
446 if test -r Makefile ; then
447 printf 'make ... ' 1>&2
448 if test "x$ADM" = xt ; then
449 $MAKE adall >> make.log 2>&1
450 elif test "x$OADM" = xt ; then
451 $MAKE adAll >> make.log 2>&1
452 else
453 if test "x$JOBS" = x ; then
454 $MAKE >> make.log 2>&1
455 else
456 $MAKE -j $JOBS >> make.log 2>&1
457 fi
458 fi
459 RETVAL=$?
460 if test "x$RETVAL" != x0 ; then
461 tail make.log
462 echo failed 1>&2
463 cp make.log $CDIR"/make.log"
464 return 1
465 else
466 echo successful 1>&2
467 fi
468 fi
469 )
470 }
471
472 symlink_mpifiles()
473 {
474 # Put special links so that MPI specific files are used
475 # This MUST be invoked between makeclean and makelinks because
476 # the Makefile will link to non-mpi files by default
477
478 dir=$1
479 code_dir=$2
480 BUILD_DIR=$dir/$3
481 CODE_DIR=$dir/$code_dir
482
483 # These are files that should replace their counter-part when using -mpi
484 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
485
486 # Is this an MPI run?
487 if test "x$MPI" = xt ; then
488 # YES: We symbolically link these files to the build
489 # dir so long as there is no real file in place
490 for ii in $MPI_FILES ; do
491 i=`echo $ii | sed 's:^\./::'`
492 name=`echo $i | sed 's:_mpi::' `
493 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
494 RETVAL=$?
495 if test "x$RETVAL" != x0 ; then
496 if ! test -f $BUILD_DIR/$i ; then
497 #echo Linking $name to $i
498 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
499 fi
500 fi
501 done
502 else
503 # NO: We undo any _mpi symbolically linked files
504 for ii in $MPI_FILES ; do
505 i=`echo $ii | sed 's:^\./::'`
506 name=`echo $i | sed 's:_mpi::' `
507 if test -L $BUILD_DIR/$name ; then
508 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
509 RETVAL=$?
510 if test "x$RETVAL" = x0 ; then
511 #echo Un-linking $name from $linktarg
512 rm -f $BUILD_DIR/$name
513 fi
514 fi
515 done
516 fi
517
518 }
519
520 linkdata()
521 {
522 # linkdata run_dir input_dir_1 input_dir_2 ...
523 #
524 # symbolically link data files to run directory
525 if test -d $1 ; then
526 (
527 cd $1 ; shift
528 if test -r "../"$1"/eedata.mth" ; then
529 # found eedata.mth in 1rst input dir and it is readable
530 if test "x$MULTI_THREAD" = "xt" ; then
531 # multi-threaded test: remove symbolic link & link eedata.mth
532 if test -h eedata ; then rm -f eedata ; fi
533 if test ! -r eedata ; then
534 ln -sf "../"$1"/eedata.mth" eedata ;
535 printf 'eedata.mth ' 1>&2
536 fi
537 else
538 # not multi-threaded test: remove eedata symbolic link
539 if test -h eedata ; then rm -f eedata ; fi
540 fi
541 fi
542 prevDir='NONE'
543 for ldir in $* ; do
544 if test -d "../"$ldir -a $ldir != $prevDir ; then
545 printf 'ldir='${ldir} 1>&2
546 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
547 for i in $files ; do
548 if test ! -d "../"$ldir/$i ; then
549 if test ! -r $i ; then
550 printf ' '$i 1>&2
551 ln -sf "../"$ldir"/"$i $i
552 fi
553 fi
554 done
555 if test -x "../"$ldir"/"prepare_run ; then
556 "../"$ldir"/"prepare_run
557 fi
558 printf ' ; ' 1>&2
559 fi
560 prevDir=$ldir
561 done
562 )
563 fi
564 }
565
566 runmodel()
567 {
568 # runmodel directory
569 #
570 # runs "$COMMAND in "directory"
571 # (where "$COMMAND" is relative to "directory")
572 (
573 cd $1
574 printf 'runmodel in %s ...' $1 1>&2
575 # make output.txt
576 echo
577 if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
578 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
579 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi
580 fi
581 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
582 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
583 ln -sf "../"$builddir"/"$EXECUTABLE .
584 fi
585 if test ! -x $EXECUTABLE ; then
586 rm -f $RUNLOG ; touch $RUNLOG
587 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
588 echo " no executable:" $EXECUTABLE >> $RUNLOG
589 RETVAL=8
590 ENDVAL=-1
591 else
592 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
593 # output do not exist or is older than executable:
594 rm -f $RUNLOG ; touch $RUNLOG
595 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
596 ( eval $COMMAND ) >> $RUNLOG 2>&1
597 RETVAL=$?
598 else
599 RETVAL=0
600 if test -f $RUNLOG ; then
601 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
602 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
603 else
604 touch $RUNLOG
605 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
606 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
607 echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1
608 fi
609 fi
610 ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
611 fi
612 rm -f run.log_tmp
613 #if test "x$RETVAL" = x0 ; then
614 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
615 tail $RUNLOG
616 echo successful 1>&2
617 # === Reduce the size of the testing emails!
618 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
619 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
620 return 0
621 else
622 tail $RUNLOG
623 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
624 cp $RUNLOG $CDIR"/"$RUNLOG
625 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
626 return 1
627 fi
628 )
629 }
630
631 createcodelet()
632 {
633 # create codelet for comparing model output
634
635 printf "creating the comparison code (using CC=$CC)... "
636 cat > tr_cmpnum.c <<EOF
637 #include <stdio.h>
638 #include <math.h>
639 int main( int argc, char** argv ) {
640 int linnum,cmplin,best,lncnt;
641 double a,b,abave,relerr;
642 best = -22;
643 lncnt = 0;
644 while( 1 & ( (lncnt+=1) < 999 ) ) {
645 scanf("%d", &linnum);
646 if (linnum == -1) break;
647 scanf("%lf", &a); scanf("%lf", &b);
648 abave = 0.5*(fabs(a)+fabs(b));
649 if ( abave == abave ) {
650 if (abave > 0.0) {
651 relerr=fabs(a-b)/abave;
652 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
653 else { cmplin = -16 ; }
654 best = (best > cmplin) ? best : cmplin; }
655 else { cmplin = -22 ; }
656 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
657 }
658 else {
659 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
660 break; }
661 }
662 if (lncnt == 999) best=-29;
663 if (linnum != -1) best=-99;
664 printf("%d\n", -best);
665 return 0;
666 }
667 EOF
668 $CC -o tr_cmpnum tr_cmpnum.c -lm
669
670 if [ -x ./tr_cmpnum ]; then
671 echo "OK"
672 return 0
673 else
674 echo
675 echo "ERROR: failed to compile comparison code -- please specify"
676 echo " a C compiler using the CC environment variable."
677 exit 1
678 fi
679 }
680
681 formatresults()
682 {
683 # formatresults expt genmake depend make run results*
684
685 nm=$1
686 printf '%s %s %s %s' $2 $3 $4 $5
687 shift; shift; shift; shift; shift;
688 listPrt=$@
689 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
690 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
691 printf '%3s' $listPrt
692 # line below does not work on hp-ux_ia64 : do those substitutions later on
693 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
694
695 if [ $xx = '..' ]; then
696 printf ' N/O '
697 elif [ $xx = '--' ]; then
698 printf ' N/O '
699 elif [ $xx = 99 ]; then
700 printf ' N/O '
701 else
702 if [ $xx -ge $MATCH_CRIT ]; then
703 printf ' pass'
704 else
705 printf ' FAIL'
706 fi
707 fi
708 printf ' %s' $nm
709 printf '\n'
710
711 }
712
713 scandirs()
714 {
715 if [ $# -eq 1 ]; then
716 for arg in * ; do
717 test -f $arg/$1 && echo $arg
718 done
719 else
720 echo $*
721 fi
722 }
723
724
725 check_eedata()
726 {
727 # check_eedata size.h eedata
728 if [ $# -eq 2 ] ; then
729 if test -f $1 -a -f $2 ; then
730 sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
731 nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
732 if test "x$nx" = x ; then
733 rx=10
734 else
735 rx=`expr $sx % $nx`
736 fi
737 sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
738 ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
739 if test "x$ny" = x ; then
740 ry=20
741 else
742 ry=`expr $sy % $ny`
743 fi
744 echo `expr $rx + $ry`
745 else
746 echo '-1'
747 fi
748 else
749 echo '-2'
750 fi
751
752 }
753
754 ###############################################################################
755
756
757 # Default properties
758 debug=0
759 verbose=1
760 clean=0
761
762 IEEE=true
763 if test "x$MITGCM_IEEE" != x ; then
764 IEEE=$MITGCM_IEEE
765 fi
766 GSL=f
767
768 CLEANUP=f
769 QUICK=f
770 NOGENMAKE=f
771 NOCLEAN=f
772 NODEPEND=f
773 POSTCLEAN=f
774
775 BASH=
776 OPTFILE=NONE
777 ADDRESSES=
778 TESTDIRS=
779 SKIPDIRS=
780 MPACKDIR="../tools/mpack-1.6"
781 HAVE_MPACK=
782 MPACK=
783 COMMAND=
784 if test "x$MAKE" = x ; then
785 MAKE=make
786 fi
787 if test "x$CC" = x ; then
788 CC=cc
789 fi
790 JOBS=
791 MPI=f
792 MULTI_THREAD=f
793 OUTDIR=
794 DELDIR=
795
796 ADM=
797 OADM=
798
799 # list of pTracers to check for monitor output
800 PTRACERS_NUM="1 2 3 4 5"
801
802 MATCH_CRIT=13
803
804 printf "parsing options... "
805
806 ac_prev=
807 for ac_option ; do
808
809 # If the previous option needs an argument, assign it.
810 if test -n "$ac_prev"; then
811 eval "$ac_prev=\$ac_option"
812 ac_prev=
813 continue
814 fi
815
816 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
817
818 case $ac_option in
819
820 -help | --help | -h | --h)
821 usage ;;
822
823 -optfile | --optfile | -of | --of)
824 ac_prev=OPTFILE ;;
825 -optfile=* | --optfile=* | -of=* | --of=*)
826 OPTFILE=$ac_optarg ;;
827
828 -addr | --addr | -a | --a)
829 ac_prev=ADDRESSES ;;
830 -addr=* | --addr=*)
831 ADDRESSES=$ac_optarg ;;
832 -mpackdir | --mpackdir | -mpd | --mpd)
833 ac_prev=MPACKDIR ;;
834 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
835 MPACKDIR=$ac_optarg ;;
836
837 -tdir | --tdir | -t | --t)
838 ac_prev=TESTDIRS ;;
839 -tdir=* | --tdir=*)
840 TESTDIRS=$ac_optarg ;;
841
842 -skipdir | --skipdir | -skd | --skd)
843 ac_prev=SKIPDIRS ;;
844 -skipdir=* | --skipdir=*)
845 SKIPDIRS=$ac_optarg ;;
846
847 -bash | --bash | -b | --b)
848 ac_prev=BASH ;;
849 -bash=* | --bash=*)
850 BASH=$ac_optarg ;;
851
852 -command | --command | -c | --c)
853 ac_prev=COMMAND ;;
854 -command=* | --command=*)
855 COMMAND=$ac_optarg ;;
856
857 -make | --make | -m | --m)
858 ac_prev=MAKE ;;
859 -make=* | --make=*)
860 MAKE=$ac_optarg ;;
861
862 -odir | --odir)
863 ac_prev=OUTDIR ;;
864 -odir=* | --odir=*)
865 OUTDIR=$ac_optarg ;;
866
867 -ptracers | --ptracers | -ptr | --ptr)
868 ac_prev=PTRACERS_NUM ;;
869 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
870 PTRACERS_NUM=$ac_optarg ;;
871
872 -match | --match ) ac_prev=MATCH_CRIT ;;
873 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
874
875 -j) ac_prev=JOBS ;;
876 -j=*) JOBS=$ac_optarg ;;
877
878 -clean | --clean)
879 CLEANUP=t ; DELDIR=t ;;
880
881 -quick | --quick | -q | --q)
882 QUICK=t ;;
883 -nogenmake | --nogenmake | -ng | --ng)
884 NOGENMAKE=t ;;
885 -noclean | --noclean | -nc | --nc)
886 NOCLEAN=t ;;
887 -nodepend | --nodepend | -nd | --nd)
888 NODEPEND=t ;;
889
890 -postclean | --postclean | -pc | --pc)
891 POSTCLEAN=t ;;
892
893 -mpi) MPI=t ;;
894
895 -mth) MULTI_THREAD=t ;;
896
897 -adm | -ad) ADM=t ;;
898
899 -oad) OADM=t; NODEPEND=t ;;
900
901 -ieee) IEEE=true ;;
902 -noieee) IEEE= ;;
903 -gsl) GSL=t ;;
904
905 -verbose) verbose=2 ;;
906 -debug) debug=1 ;;
907 -quiet) verbose=0 ;;
908
909 -deldir | -dd) DELDIR=t ;;
910
911 -ts) TS=t;;
912
913 -papis) PAPIS=t;;
914
915 -pcls) PCL=t;;
916
917 -*)
918 echo "Error: unrecognized option: "$ac_option
919 usage
920 ;;
921
922 *)
923 echo "Error: unrecognized argument: "$ac_option
924 usage
925 ;;
926
927 esac
928
929 done
930
931 if test "x$QUICK" = xt ; then
932 NOGENMAKE=t
933 NOCLEAN=t
934 NODEPEND=t
935 fi
936
937 #- setting for forward or ADM testing
938 if test "x$ADM" = xt ; then
939 code_dir=code_ad
940 inputdir=input_ad
941 ref_outp="output_adm.txt"
942 EXECUTABLE="mitgcmuv_ad"
943 elif test "x$OADM" = xt ; then
944 code_dir=code_oad
945 inputdir=input_oad
946 ref_outp="output_oadm.txt"
947 EXECUTABLE="mitgcmuv_ad"
948 else
949 code_dir=code
950 inputdir=input
951 ref_outp="output.txt"
952 EXECUTABLE="mitgcmuv"
953 fi
954
955 if test "x$TESTDIRS" = x ; then
956 LIST=`scandirs results/$ref_outp`
957 else
958 #- expand group of experiments:
959 LIST=" "
960 for xx in $TESTDIRS
961 do
962 case $xx in
963 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
964 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
965 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
966 ;;
967 'tutorials')
968 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
969 *) LIST=${LIST}" "$xx ;;
970 esac
971 done
972 fi
973 #echo 'LIST='${LIST}'<'
974 #- skip dirs, remove duplicate and non-directory:
975 TESTDIRS=" "
976 count=0
977 for xx in $LIST
978 do
979 yy=`echo $SKIPDIRS | grep -c $xx`
980 if test $yy = 0 ; then
981 if test -d $xx ; then
982 yy=`echo $TESTDIRS | grep -c $xx`
983 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
984 else count=1 ;
985 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
986 fi
987 else
988 if test $count = 1 ; then echo -n ", \"$xx\""
989 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
990 fi
991 fi
992 done
993 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
994 #echo 'TESTDIRS='${TESTDIRS}'<'
995
996 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
997 OPTFILE=$MITGCM_OF
998 fi
999
1000 RUNLOG="run.log"
1001 OUTPUTFILE=$ref_outp
1002 if test "x$COMMAND" = x ; then
1003 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1004 fi
1005 if test "x$MPI" = xt ; then
1006 OUTPUTFILE="STDOUT.0000"
1007 fi
1008
1009 echo "OK (COMMAND= $COMMAND )"
1010
1011 # set the Default List of output variables to be checked:
1012 # (use default or load experiment-specific list from file "tr_checklist")
1013 # content : 1rst = main variable used to decide if it pass or FAIL
1014 # others = number of matching digits to be printed in summary.txt
1015 if test "x$ADM" = x -a "x$OADM" = x; then
1016 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1017 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1018 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1019 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1020 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1021 else
1022 DEF_CHECK_LIST='Grad Cost Grad'
1023 EMPTY_RESULTS='.. ..'
1024 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1025 fi
1026
1027 # create the FORTRAN comparison code
1028 createcodelet
1029
1030 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1031 if test "x$ADDRESSES" = x ; then
1032 echo "skipping mpack build"
1033 else
1034 build_mpack
1035 fi
1036
1037 # Create a uniquely named directory to store results
1038 CMDLINE=$0
1039 for xx in "$@" ; do nw=`echo $xx | wc -w`
1040 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1041 else CMDLINE="$CMDLINE '$xx'" ; fi
1042 done
1043 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1044 MACH=`hostname`
1045 UNAMEA=`uname -a`
1046 DATE=`date +%Y%m%d`
1047 BASE="tr_"$MACH"_"$DATE"_"
1048 if test "x$OUTDIR" != x ; then
1049 BASE="tr_"$OUTDIR"_"$DATE"_"
1050 else
1051 short_name=`hostname | sed 's/\..*$//'`
1052 BASE="tr_"$short_name"_"$DATE"_"
1053 fi
1054 DNUM=0
1055 DRESULTS="$BASE$DNUM"
1056 while test -e $DRESULTS ; do
1057 DNUM=$(( $DNUM + 1 ))
1058 DRESULTS="$BASE$DNUM"
1059 done
1060 mkdir $DRESULTS
1061 RETVAL=$?
1062 if test "x$RETVAL" != x0 ; then
1063 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1064 exit 1
1065 fi
1066 SUMMARY="$DRESULTS/summary.txt"
1067 start_date=`date`
1068 echo $start_date > $SUMMARY
1069 echo 'run:' $CMDLINE >> $SUMMARY
1070 echo 'on :' $UNAMEA >> $SUMMARY
1071
1072 of_path=
1073 if test "x$OPTFILE" != xNONE ; then
1074 if test -r $OPTFILE ; then
1075 # get the path
1076 path=${OPTFILE%/*}
1077 if test "x$path" = x ; then
1078 of_path=`pwd`
1079 else
1080 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1081 fi
1082 file=${OPTFILE##*/}
1083 OPTFILE=$of_path/$file
1084 cp $OPTFILE $DRESULTS
1085 echo >> $SUMMARY
1086 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1087 else
1088 echo | tee $SUMMARY
1089 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1090 exit 1
1091 fi
1092 else
1093 echo >> $SUMMARY
1094 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1095 echo " so the genmake default will be used." >> $SUMMARY
1096 fi
1097 echo
1098 echo >> $SUMMARY
1099 if test "x$ADM" = x -a "x$OADM" = x; then
1100 if [ $MATCH_CRIT -lt 10 ] ;
1101 then line_0="default "$MATCH_CRIT ;
1102 else line_0="default "$MATCH_CRIT ; fi
1103 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1104 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1105 line_1="G D M c m s m s m s m s"
1106 line_2="E p a R g m m e . m m e . m m e . m m e ."
1107 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1108 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1109 for ii in $PTRACERS_NUM ; do
1110 line_0="$line_0 --PTR 0"$ii"--"
1111 line_1="$line_1 m s"
1112 line_2="$line_2 m m e ."
1113 line_3="$line_3 i a a d"
1114 line_4="$line_4 n x n ."
1115 done
1116 echo "$line_0" | tee -a $SUMMARY
1117 echo "$line_1" | tee -a $SUMMARY
1118 echo "$line_2" | tee -a $SUMMARY
1119 echo "$line_3" | tee -a $SUMMARY
1120 echo "$line_4" | tee -a $SUMMARY
1121 echo " " | tee -a $SUMMARY
1122 else
1123 echo "ADJOINT=true" >> $SUMMARY
1124 echo >> $SUMMARY
1125 if [ $MATCH_CRIT -lt 10 ] ;
1126 then line_0="default "$MATCH_CRIT ;
1127 else line_0="default "$MATCH_CRIT ; fi
1128 echo "$line_0" | tee -a $SUMMARY
1129 cat << EOF | tee -a $SUMMARY
1130 G D M C G
1131 E p a R o r
1132 N n k u s a
1133 2 d e n t d
1134
1135 EOF
1136 fi
1137
1138 # ...and each test directory...
1139 for dir in $TESTDIRS ; do
1140
1141 # set builddir & rundir:
1142 builddir="build"
1143 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1144 rundir="run"
1145 if test ! -d $dir/$rundir ; then
1146 rundir=$builddir
1147 fi
1148 CODE_DIR=$dir/$code_dir
1149 BUILD_DIR=$dir/$builddir
1150
1151 # Cleanup only!
1152 if test "x$CLEANUP" = xt ; then
1153 if test -r $BUILD_DIR/Makefile ; then
1154 echo ' ------ clean dir:' $dir/$builddir
1155 ( cd $BUILD_DIR ; make CLEAN )
1156 fi
1157 if test -d $dir/$rundir/CVS ; then
1158 echo ' ------ clean dir:' $dir/$rundir
1159 run_clean $dir/$rundir
1160 fi
1161 (
1162 cd $dir
1163 rm -rf tr_run.*
1164 )
1165 continue
1166 fi
1167
1168 # Verify that the testdir exists and contains previous
1169 # results in the correct location--or skip this directory!
1170 fout=$dir"/results/"$ref_outp
1171 if test ! -r $fout ; then
1172 echo "can't read \"$fout\" -- skipping $dir"
1173 continue
1174 fi
1175
1176 # Check for specific files for particular type of run
1177
1178 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1179 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1180 continue
1181 fi
1182 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1183 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1184 continue
1185 fi
1186 if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then
1187 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"`
1188 if test $retv != 0 ; then
1189 echo "input/eedata.mth tiling misfit -- skipping $dir"
1190 continue
1191 fi
1192 fi
1193
1194 # Check whether there are "extra runs" for this testdir
1195 extra_runs=
1196 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1197 #echo "ex_run_dirs='$ex_run_dirs'"
1198 for exd in $ex_run_dirs ; do
1199 name=`echo $exd | sed -e "s/$inputdir\.//"`
1200 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1201 outf="$dir/results/$refExOut"
1202 if test -f $outf -a -r $outf ; then
1203 if test "x$MULTI_THREAD" = "xt" ; then
1204 if test -r $dir"/"$exd"/eedata.mth" ; then
1205 if test "x$MPI" = "xt" ; then
1206 retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"`
1207 if test $retv = 0 ; then
1208 extra_runs="$extra_runs $name"
1209 else
1210 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1211 fi
1212 else
1213 extra_runs="$extra_runs $name"
1214 fi
1215 #else echo $dir"/"$exd"/eedata.mth: not found"
1216 fi
1217 else
1218 extra_runs="$extra_runs $name"
1219 fi
1220 fi
1221 done
1222
1223 echo "-------------------------------------------------------------------------------"
1224 echo
1225 if test "x$extra_runs" = "x" ; then
1226 echo "Experiment: $dir"
1227 else
1228 echo "Experiment: $dir ; extra_runs=$extra_runs"
1229 fi
1230 echo
1231 unset genmake makedepend make run
1232 results=$EMPTY_RESULTS
1233
1234 # Create an output dir for each OPTFILE/tdir combination
1235 rel_CDIR=$DRESULTS"/"$dir
1236 mkdir $rel_CDIR
1237 CDIR=`pwd`"/$rel_CDIR"
1238
1239 if test "x$CLEANUP" = xt ; then
1240 echo '====>>> this is to check that we never go through this part <<< ==='
1241 makeclean $dir/$builddir \
1242 && run_clean $dir/$rundir
1243 else
1244 genmakemodel $dir/$builddir && genmake=Y \
1245 && makeclean $dir/$builddir \
1246 && run_clean $dir/$rundir \
1247 && symlink_mpifiles $dir $code_dir $builddir \
1248 && makedependmodel $dir/$builddir && makedepend=Y \
1249 && makemodel $dir/$builddir && make=Y \
1250 && linkdata $dir/$rundir $inputdir input \
1251 && runmodel $dir/$rundir && run=Y \
1252 && results=`testoutput_run $dir $rundir $ref_outp`
1253 fi
1254
1255 echo
1256 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1257 echo
1258 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1259 touch $CDIR"/summary.txt"
1260 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1261 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1262 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1263 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1264 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1265 if test "x$ADM" = xt ; then
1266 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1267 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1268 >> $CDIR"/summary.txt"
1269 fi
1270
1271 for ex in $extra_runs ; do
1272 unset run
1273 results=$EMPTY_RESULTS
1274 # reference output file
1275 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1276 # Create an output dir for each OPTFILE/tdir.ex combination
1277 rel_CDIR=$DRESULTS"/"$dir"."$ex
1278 mkdir $rel_CDIR
1279 CDIR=`pwd`"/$rel_CDIR"
1280 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1281 run_clean $dir/tr_run.$ex
1282 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1283 runmodel $dir/tr_run.$ex && run=Y \
1284 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1285 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1286 fres="$fres.$ex"
1287 echo
1288 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1289 touch $CDIR"/summary.txt"
1290 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1291 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1292 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1293 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1294 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1295 if test "x$ADM" = xt ; then
1296 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1297 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1298 >> $CDIR"/summary.txt"
1299 fi
1300 if test "x$POSTCLEAN" = xt ; then
1301 run_clean $dir/tr_run.$ex
1302 fi
1303 done
1304
1305 #postclean $dir/$builddir
1306 if test "x$POSTCLEAN" = xt ; then
1307 makeclean $dir/$builddir \
1308 && run_clean $dir/$rundir
1309 fi
1310
1311 echo "-------------------------------------------------------------------------------"
1312
1313 done
1314
1315 printf "Start time: " >> $SUMMARY
1316 echo "$start_date" >> $SUMMARY
1317 printf "End time: " >> $SUMMARY
1318 date >> $SUMMARY
1319
1320 # If addresses were supplied and mpack built successfully, then try
1321 # to send email using mpack.
1322 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1323 echo "No results email was sent."
1324 else
1325 if test "x$HAVE_MPACK" = xt ; then
1326 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1327 && gzip $DRESULTS".tar" \
1328 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1329 RETVAL=$?
1330 if test "x$RETVAL" != x0 ; then
1331 echo
1332 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1333 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1334 echo " summary of results from the directory \"$DRESULTS\"."
1335 echo
1336 else
1337 echo
1338 echo "An email containing results was sent to the following addresses:"
1339 echo " \"$ADDRESSES\""
1340 echo
1341 fi
1342 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1343 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1344 fi
1345 fi
1346
1347 rm -f tr_cmpnum.c tr_cmpnum
1348
1349 if test "x$CLEANUP" != xt ; then
1350 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1351 if test -e tr_out.txt ; then
1352 mv tr_out.txt tr_out.txt.old
1353 fi
1354 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1355 fi
1356
1357 if test "x$DELDIR" = xt ; then
1358 rm -rf $DRESULTS
1359 fi

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