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Revision 1.118 - (show annotations) (download)
Thu Aug 28 17:12:10 2008 UTC (15 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint61f, checkpoint61g, checkpoint61d, checkpoint61e, checkpoint61c
Changes since 1.117: +6 -2 lines
cosmetic change to the CMDLINE print

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.117 2008/08/19 18:29:12 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-of=|-optfile=)STRING list of optfiles to use"
20 echo " (-a|-addr) STRING list of email recipients"
21 echo " (DEF=\"\" no email is sent)"
22 echo " (-mpd|-mpackdir) DIR location of the mpack utility"
23 echo " (DEF=\"../tools/mpack-1.6\")"
24 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
25 echo " (recognized groups: basic, tutorials)"
26 echo " (DEF=\"\" which test all)"
27 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
28 echo " (DEF=\"\" which test all)"
29 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
30 echo " Bourne-compatible \"sh\" shell"
31 echo " (DEF=\"\" for \"bash\")"
32 echo " (-adm|-ad) perform an adjoint run"
33 echo " (-command) STRING command to run"
34 echo " (DEF=\"make output.txt\")"
35 echo " (-m|-make) STRING command to use for \"make\""
36 echo " (DEF=\"make\")"
37 echo " (-odir) STRING used to build output directory name"
38 echo " (DEF=\"hostname\")"
39 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
40 echo " (DEF=\"1 2 3 4 5\")"
41 echo " (-match) NUMBER Matching Criteria (number of digits)"
42 echo " (DEF=\"12\")"
43 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
44 echo " (-clean) *ONLY* run \"make CLEAN\""
45 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
46 echo " (-nogenmake|-ng) skip the genmake stage"
47 echo " (-noclean|-nc) skip the \"make clean\" stage"
48 echo " (-nodepend|-nd) skip the \"make depend\" stage"
49 echo " (-deldir|-dd) on success, delete the output directory"
50 echo " (-ts) provide timing information per timestep"
51 echo " (-papis) provide MFlop/s per timestep using PAPI"
52 echo " (-pcls) provide MFlop/s per timestep using PCL"
53 echo
54 echo "and where STRING can be a whitespace-delimited list"
55 echo "such as:"
56 echo
57 echo " -t 'exp0 exp2 exp3' "
58 echo " -addr='abc@123.com testing@home.org'"
59 echo
60 echo "provided that the expression is properly quoted within the current"
61 echo "shell (note the use of single quotes to protect white space)."
62 echo
63 exit 1
64 }
65
66 # build the mpack utility
67 build_mpack()
68 {
69 printf "building the mpack utility... "
70 MPACK="$MPACKDIR/mpack"
71 if test ! -x $MPACK ; then
72 if test ! -d $MPACKDIR ; then
73 echo
74 echo "Error: can't find \"$MPACKDIR\""
75 echo " are you sure this program is being run in the correct "
76 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
77 echo
78 HAVE_MPACK=f
79 fi
80 if test "x$CC" = x ; then
81 export CC=cc
82 fi
83 printf "building mpack (using CC=$CC)... "
84 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
85 RETVAL=$?
86 if test "x$RETVAL" != x0 ; then
87 echo
88 echo "Error building the mpack tools at: $MPACK_DIR"
89 echo
90 HAVE_MPACK=f
91 else
92 rm -f tr_build_mpack.out
93 HAVE_MPACK=t
94 echo "done"
95 fi
96 else
97 HAVE_MPACK=t
98 echo "already exist"
99 fi
100 }
101
102 testoutput_var()
103 {
104 # testoutput_var dir s1 label subdir reference_output
105 #
106 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
107 # with same output from reference file $dir/results/$reference_output
108 # using search strings s1 and text label
109
110 if [ $debug -gt 0 ]; then
111 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
112 fi
113 if [ -r $1/$4/$OUTPUTFILE ]; then
114 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
115 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
116 if [ $lncntA -lt 2 ]; then
117 if [ $verbose -gt 0 ]; then
118 echo Not enough lines of output when searching for "$2" 1>&2
119 fi
120 return 99
121 fi
122 else
123 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
124 return 99
125 fi
126 if [ $debug -gt 0 ]; then
127 echo testoutput_var: grep "$2" $1/results/$5 1>&2
128 fi
129 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
130 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
131 if [ $lncntB -lt 2 ]; then
132 if [ $verbose -gt 0 ]; then
133 echo Not enough lines of output when searching for "$2" 1>&2
134 fi
135 return 99
136 fi
137 if [ $lncntA -ne $lncntB ]; then
138 if [ $verbose -gt 0 ]; then
139 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
140 fi
141 return 99
142 fi
143 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
144 if [ $has_nan -gt 0 ] ; then
145 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
146 return 99
147 fi
148 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
149 if [ $has_inf -gt 0 ] ; then
150 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
151 return 99
152 fi
153 if [ $debug -gt 0 ]; then
154 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
155 fi
156 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
157 if [ $debug -gt 0 ]; then
158 echo testoutput_var: compare_lines 1>&2
159 fi
160 if [ $verbose -gt 1 ]; then
161 cat tmp3.txt 1>&2
162 fi
163 echo "-1" >> tmp3.txt
164 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
165 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
166 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
167 if [ $digits_of_similarity -eq 99 ]; then
168 if [ $verbose -gt 0 ]; then
169 echo testoutput_var: No comparison was available for \"$3\" 1>&2
170 fi
171 digits_of_similarity=99
172 else
173 if [ $verbose -gt 0 ]; then
174 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
175 fi
176 fi
177 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
178
179 return $digits_of_similarity
180 }
181
182 testoutput_run()
183 {
184 # testoutput_run directory subdir reference_output
185 #
186 # test output from 1 run in "directory"
187 # --> same processing for adjoint & forward test
188 # default list of output variables to be checked:
189 # 1rst : main variable used to decide if it pass or FAIL
190 # others : number of matching digits to be printed in summary.txt
191 listChk=$DEF_CHECK_LIST
192 # load experiment-specific list from file "tr_checklist" (if it exist)
193 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
194 sVar=`echo $listChk | awk '{print $1}'`
195 # remove 1rst var and expand the list: + => min max mean s.d
196 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
197 | sed 's/+//g' | sed "s/^$sVar//"`
198 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
199 # check for ptracer output in reference_output file :
200 outpref=$1/results/$3
201 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
202 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
203 for ii in $PTRACERS_NUM ; do
204 ptrfound=0
205 for jj in $ptr_mon ; do
206 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
207 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
208 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
209 done
210 if test $ptrfound = '1' ; then
211 eval "HAVE_PTR0"$ii"=t"
212 else
213 eval "HAVE_PTR0"$ii"=f"
214 if test "x$ADM" = x ; then
215 # remove this ptr from the list of output variable to check
216 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
217 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
218 fi
219 fi
220 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
221 done
222 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
223 if test $tst != 1 ; then
224 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
225 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
226 echo "==> WARNING: in checked list:" $listVar 1>&2
227 #- put it back once:
228 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
229 fi
230 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
231 echo "listVar='$listVar'" > $CDIR"/summary.txt"
232 allargs=""
233 for xx in $listVar
234 do
235 case $xx in
236 'PS') if [ $debug -gt 0 ]
237 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
238 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
239 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
240 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
241 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
242 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
243 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
244 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
245 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
246 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
247 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
248 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
249 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
250 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
251 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
252 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
253 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
254 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
255 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
256 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
257 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
258 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
259 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
260 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
261 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
262 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
263 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
264 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
265 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
266 'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
267 'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
268 'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
269 'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
270 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
271 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
272 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
273 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
274 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
275 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;;
276 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;;
277 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;;
278 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
279 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
280 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
281 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
282 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
283 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
284 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
285 esac
286 if test $xx = $sVar
287 then allargs="$allargs > $yy <"
288 else allargs="$allargs $yy"
289 fi
290 done
291
292 nbVar=`echo $listVar | awk '{print NF}'`
293 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
294 #-- fill line (up to standard length) with dot:
295 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
296 echo $allargs $adNul
297 else
298 echo $allargs
299 fi
300 # <-- same processing for adjoint & forward test
301 }
302
303 genmakemodel()
304 {
305 # genmakemodel directory
306 if test "x$NOGENMAKE" = xt ; then
307 echo "genmake skipped!"
308 else
309 if test "x$BASH" = x ; then
310 GENMAKE2="../../../tools/genmake2"
311 else
312 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
313 fi
314 (
315 cd $1;
316 command="$GENMAKE2 -ds -m $MAKE"
317 if test "x$ADM" = x ; then
318 command="$command --mods=../code"
319 else
320 command="$command --mods=../code_ad"
321 fi
322 if test "x$OPTFILE" != xNONE ; then
323 command="$command --optfile=$OPTFILE"
324 fi
325 if test "x$IEEE" != x ; then
326 command="$command -ieee"
327 fi
328 if test "x$GSL" = xt ; then
329 command="$command -gsl"
330 fi
331 if test "x$MPI" = xt ; then
332 command="$command -mpi"
333 fi
334 if test "x$TS" = xt ; then
335 command="$command -ts"
336 fi
337 if test "x$PAPIS" = xt ; then
338 command="$command -papis"
339 else
340 if test "x$PCLS" = xt ; then
341 command="$command -pcls"
342 fi
343 fi
344 printf 'genmake ... ' 1>&2
345 $command > make.log 2>&1
346 RETVAL=$?
347 # Reduce the size of the testing emails!
348 head -100 Makefile > $CDIR/Makefile_head
349 if test "x$RETVAL" != x0 ; then
350 tail make.log
351 echo "genmakemodel: genmake failed" 1>&2
352 cp genmake_* make.log $CDIR
353 return 1
354 else
355 echo "successful" 1>&2
356 fi
357 )
358 fi
359 }
360
361 makeclean()
362 {
363 # makeclean directory
364 if test "x$NOCLEAN" = xt ; then
365 echo "make Clean skipped!"
366 else
367 (
368 cd $1;
369 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
370 if test -r Makefile ; then
371 printf 'clean build-dir: make Clean ... ' 2>&1
372 $MAKE Clean >> make.log 2>&1
373 RETVAL=$?
374 if test "x$RETVAL" != x0 ; then
375 tail make.log
376 echo "makeclean: \"make Clean\" failed" 1>&2
377 cp make.log $CDIR"/make.log"
378 return 1
379 fi
380 fi
381 echo successful 1>&2
382 exit 0
383 )
384 fi
385 }
386
387 run_clean()
388 {
389 # run_clean directory
390 if test "x$NOCLEAN" = xt ; then
391 echo "run_clean skipped!"
392 else
393 (
394 cd $1;
395 printf 'clean run-dir ... ' 2>&1
396 # part of what is done after "make clean" when doing "make CLEAN"
397 find . -name "*.meta" -exec rm {} \;
398 find . -name "*.data" -exec rm {} \;
399 find . -name "fort.*" -exec rm {} \;
400 find . -type l -exec rm {} \;
401 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
402 rm -rf mnc_test_*
403 rm -f *_MIT_CE_000.opt0000 costfunction*0000
404 echo successful 1>&2
405 exit 0
406 )
407 fi
408 }
409
410 makedependmodel()
411 {
412 # makedependmodel directory
413 if test "x$NODEPEND" = xt ; then
414 echo "make depend skipped!"
415 else
416 (
417 cd $1;
418 printf 'make depend ... ' 1>&2
419 $MAKE depend >> make.log 2>&1
420 RETVAL=$?
421 if test "x$RETVAL" != x0 ; then
422 tail make.log
423 echo "makedependmodel: make depend failed" 1>&2
424 cp make.log $CDIR"/make.log"
425 return 1
426 else
427 echo successful 1>&2
428 fi
429 )
430 fi
431 }
432
433 makemodel()
434 {
435 # makemodel directory
436 (
437 cd $1;
438 if test -r Makefile ; then
439 printf 'make ... ' 1>&2
440 if test "x$ADM" = x ; then
441 if test "x$JOBS" = x ; then
442 $MAKE >> make.log 2>&1
443 else
444 $MAKE -j $JOBS >> make.log 2>&1
445 fi
446 else
447 $MAKE adall >> make.log 2>&1
448 fi
449 RETVAL=$?
450 if test "x$RETVAL" != x0 ; then
451 tail make.log
452 echo failed 1>&2
453 cp make.log $CDIR"/make.log"
454 return 1
455 else
456 echo successful 1>&2
457 fi
458 fi
459 )
460 }
461
462 symlink_mpifiles()
463 {
464 # Put special links so that MPI specific files are used
465 # This MUST be invoked between makeclean and makelinks because
466 # the Makefile will link to non-mpi files by default
467
468 dir=$1
469 code_dir=$2
470 BUILD_DIR=$dir/$3
471 CODE_DIR=$dir/$code_dir
472
473 # These are files that should replace their counter-part when using -mpi
474 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)`
475
476 # Is this an MPI run?
477 if test "x$MPI" = xt ; then
478 # YES: We symbolically link these files to the build
479 # dir so long as there is no real file in place
480 for ii in $MPI_FILES ; do
481 i=`echo $ii | sed 's:^\./::'`
482 name=`echo $i | sed 's:_mpi::' `
483 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
484 RETVAL=$?
485 if test "x$RETVAL" != x0 ; then
486 if ! test -f $BUILD_DIR/$i ; then
487 #echo Linking $name to $i
488 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
489 fi
490 fi
491 done
492 else
493 # NO: We undo any _mpi symbolically linked files
494 for ii in $MPI_FILES ; do
495 i=`echo $ii | sed 's:^\./::'`
496 name=`echo $i | sed 's:_mpi::' `
497 if test -L $BUILD_DIR/$name ; then
498 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
499 RETVAL=$?
500 if test "x$RETVAL" = x0 ; then
501 #echo Un-linking $name from $linktarg
502 rm -f $BUILD_DIR/$name
503 fi
504 fi
505 done
506 fi
507
508 }
509
510 linkdata()
511 {
512 # linkdata run_dir input_dir_1 input_dir_2 ...
513 #
514 # symbolically link data files to run directory
515 if test -d $1 ; then
516 (
517 cd $1 ; shift
518 if test -r "../"$1"/eedata.mth" ; then
519 # found eedata.mth in 1rst input dir and it is readable
520 if test "x$MULTI_THREAD" = "xt" ; then
521 # multi-threaded test: remove symbolic link & link eedata.mth
522 if test -h eedata ; then rm -f eedata ; fi
523 if test ! -r eedata ; then
524 ln -sf "../"$1"/eedata.mth" eedata ;
525 printf 'eedata.mth ' 1>&2
526 fi
527 else
528 # not multi-threaded test: remove eedata symbolic link
529 if test -h eedata ; then rm -f eedata ; fi
530 fi
531 fi
532 prevDir='NONE'
533 for ldir in $* ; do
534 if test -d "../"$ldir -a $ldir != $prevDir ; then
535 printf 'ldir='${ldir} 1>&2
536 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
537 for i in $files ; do
538 if test ! -d "../"$ldir/$i ; then
539 if test ! -r $i ; then
540 printf ' '$i 1>&2
541 ln -sf "../"$ldir"/"$i $i
542 fi
543 fi
544 done
545 if test -x "../"$ldir"/"prepare_run ; then
546 "../"$ldir"/"prepare_run
547 fi
548 printf ' ; ' 1>&2
549 fi
550 prevDir=$ldir
551 done
552 )
553 fi
554 }
555
556 runmodel()
557 {
558 # runmodel directory
559 #
560 # runs "$COMMAND in "directory"
561 # (where "$COMMAND" is relative to "directory")
562 (
563 cd $1
564 printf 'runmodel in %s ...' $1 1>&2
565 # make output.txt
566 echo
567 if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
568 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
569 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; rm -f run.log ; fi
570 fi
571 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
572 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
573 ln -sf "../"$builddir"/"$EXECUTABLE .
574 fi
575 if test ! -x $EXECUTABLE ; then
576 rm -f run.log ; touch run.log
577 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
578 echo " no executable:" $EXECUTABLE >> run.log
579 RETVAL=8
580 ENDVAL=-1
581 else
582 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
583 # output do not exist or is older than executable:
584 rm -f run.log ; touch run.log
585 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
586 ( eval $COMMAND ) >> run.log 2>&1
587 RETVAL=$?
588 else
589 RETVAL=0
590 if test -f run.log ; then
591 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
592 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
593 else
594 touch run.log
595 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
596 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
597 echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
598 fi
599 fi
600 ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
601 fi
602 rm -f run.log_00
603 #if test "x$RETVAL" = x0 ; then
604 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
605 tail run.log
606 echo successful 1>&2
607 # === Reduce the size of the testing emails!
608 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
609 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
610 return 0
611 else
612 tail run.log
613 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
614 cp run.log $CDIR"/run.log"
615 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
616 return 1
617 fi
618 )
619 }
620
621 createcodelet()
622 {
623 # create codelet for comparing model output
624
625 printf "creating the comparison code (using CC=$CC)... "
626 cat > tr_cmpnum.c <<EOF
627 #include <stdio.h>
628 #include <math.h>
629 int main( int argc, char** argv ) {
630 int linnum,cmplin,best,lncnt;
631 double a,b,abave,relerr;
632 best = -22;
633 lncnt = 0;
634 while( 1 & ( (lncnt+=1) < 999 ) ) {
635 scanf("%d", &linnum);
636 if (linnum == -1) break;
637 scanf("%lf", &a); scanf("%lf", &b);
638 abave = 0.5*(fabs(a)+fabs(b));
639 if ( abave == abave ) {
640 if (abave > 0.0) {
641 relerr=fabs(a-b)/abave;
642 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
643 else { cmplin = -16 ; }
644 best = (best > cmplin) ? best : cmplin; }
645 else { cmplin = -22 ; }
646 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
647 }
648 else {
649 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
650 break; }
651 }
652 if (lncnt == 999) best=-29;
653 if (linnum != -1) best=-99;
654 printf("%d\n", -best);
655 return 0;
656 }
657 EOF
658 $CC -o tr_cmpnum tr_cmpnum.c -lm
659
660 if [ -x ./tr_cmpnum ]; then
661 echo "OK"
662 return 0
663 else
664 echo
665 echo "ERROR: failed to compile comparison code -- please specify"
666 echo " a C compiler using the CC environment variable."
667 exit 1
668 fi
669 }
670
671 formatresults()
672 {
673 # formatresults expt genmake depend make run results*
674
675 nm=$1
676 printf '%s %s %s %s' $2 $3 $4 $5
677 shift; shift; shift; shift; shift;
678 listPrt=$@
679 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
680 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
681 printf '%3s' $listPrt
682 # line below does not work on hp-ux_ia64 : do those substitutions later on
683 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
684
685 if [ $xx = '..' ]; then
686 printf ' N/O '
687 elif [ $xx = '--' ]; then
688 printf ' N/O '
689 elif [ $xx = 99 ]; then
690 printf ' N/O '
691 else
692 if [ $xx -ge $MATCH_CRIT ]; then
693 printf ' pass'
694 else
695 printf ' FAIL'
696 fi
697 fi
698 printf ' %s' $nm
699 printf '\n'
700
701 }
702
703 scandirs()
704 {
705 if [ $# -eq 1 ]; then
706 for arg in * ; do
707 test -f $arg/$1 && echo $arg
708 done
709 else
710 echo $*
711 fi
712 }
713
714
715 ###############################################################################
716
717
718 # Default properties
719 debug=0
720 verbose=1
721 clean=0
722
723 IEEE=true
724 if test "x$MITGCM_IEEE" != x ; then
725 IEEE=$MITGCM_IEEE
726 fi
727 GSL=f
728
729 CLEANUP=f
730 QUICK=f
731 NOGENMAKE=f
732 NOCLEAN=f
733 NODEPEND=f
734 POSTCLEAN=f
735
736 BASH=
737 OPTFILE=NONE
738 ADDRESSES=
739 TESTDIRS=
740 SKIPDIRS=
741 MPACKDIR="../tools/mpack-1.6"
742 HAVE_MPACK=
743 MPACK=
744 COMMAND=
745 if test "x$MAKE" = x ; then
746 MAKE=make
747 fi
748 if test "x$CC" = x ; then
749 CC=cc
750 fi
751 JOBS=
752 MPI=f
753 MULTI_THREAD=f
754 OUTDIR=
755 DELDIR=
756
757 ADM=
758
759 # list of pTracers to check for monitor output
760 PTRACERS_NUM="1 2 3 4 5"
761
762 MATCH_CRIT=13
763
764 printf "parsing options... "
765
766 ac_prev=
767 for ac_option ; do
768
769 # If the previous option needs an argument, assign it.
770 if test -n "$ac_prev"; then
771 eval "$ac_prev=\$ac_option"
772 ac_prev=
773 continue
774 fi
775
776 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
777
778 case $ac_option in
779
780 -help | --help | -h | --h)
781 usage ;;
782
783 -optfile | --optfile | -of | --of)
784 ac_prev=OPTFILE ;;
785 -optfile=* | --optfile=* | -of=* | --of=*)
786 OPTFILE=$ac_optarg ;;
787
788 -addr | --addr | -a | --a)
789 ac_prev=ADDRESSES ;;
790 -addr=* | --addr=*)
791 ADDRESSES=$ac_optarg ;;
792 -mpackdir | --mpackdir | -mpd | --mpd)
793 ac_prev=MPACKDIR ;;
794 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*)
795 MPACKDIR=$ac_optarg ;;
796
797 -tdir | --tdir | -t | --t)
798 ac_prev=TESTDIRS ;;
799 -tdir=* | --tdir=*)
800 TESTDIRS=$ac_optarg ;;
801
802 -skipdir | --skipdir | -skd | --skd)
803 ac_prev=SKIPDIRS ;;
804 -skipdir=* | --skipdir=*)
805 SKIPDIRS=$ac_optarg ;;
806
807 -bash | --bash | -b | --b)
808 ac_prev=BASH ;;
809 -bash=* | --bash=*)
810 BASH=$ac_optarg ;;
811
812 -command | --command | -c | --c)
813 ac_prev=COMMAND ;;
814 -command=* | --command=*)
815 COMMAND=$ac_optarg ;;
816
817 -make | --make | -m | --m)
818 ac_prev=MAKE ;;
819 -make=* | --make=*)
820 MAKE=$ac_optarg ;;
821
822 -odir | --odir)
823 ac_prev=OUTDIR ;;
824 -odir=* | --odir=*)
825 OUTDIR=$ac_optarg ;;
826
827 -ptracers | --ptracers | -ptr | --ptr)
828 ac_prev=PTRACERS_NUM ;;
829 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
830 PTRACERS_NUM=$ac_optarg ;;
831
832 -match | --match ) ac_prev=MATCH_CRIT ;;
833 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
834
835 -j) ac_prev=JOBS ;;
836 -j=*) JOBS=$ac_optarg ;;
837
838 -clean | --clean)
839 CLEANUP=t ; DELDIR=t ;;
840
841 -quick | --quick | -q | --q)
842 QUICK=t ;;
843 -nogenmake | --nogenmake | -ng | --ng)
844 NOGENMAKE=t ;;
845 -noclean | --noclean | -nc | --nc)
846 NOCLEAN=t ;;
847 -nodepend | --nodepend | -nd | --nd)
848 NODEPEND=t ;;
849
850 -postclean | --postclean | -pc | --pc)
851 POSTCLEAN=t ;;
852
853 -mpi) MPI=t ;;
854
855 -mth) MULTI_THREAD=t ;;
856
857 -adm | -ad) ADM=t ;;
858
859 -ieee) IEEE=true ;;
860 -noieee) IEEE= ;;
861 -gsl) GSL=t ;;
862
863 -verbose) verbose=2 ;;
864 -debug) debug=1 ;;
865 -quiet) verbose=0 ;;
866
867 -deldir | -dd) DELDIR=t ;;
868
869 -ts) TS=t;;
870
871 -papis) PAPIS=t;;
872
873 -pcls) PCL=t;;
874
875 -*)
876 echo "Error: unrecognized option: "$ac_option
877 usage
878 ;;
879
880 *)
881 echo "Error: unrecognized argument: "$ac_option
882 usage
883 ;;
884
885 esac
886
887 done
888
889 if test "x$QUICK" = xt ; then
890 NOGENMAKE=t
891 NOCLEAN=t
892 NODEPEND=t
893 fi
894
895 #- setting for forward or ADM testing
896 if test "x$ADM" = xt ; then
897 code_dir=code_ad
898 inputdir=input_ad
899 ref_outp="output_adm.txt"
900 EXECUTABLE="mitgcmuv_ad"
901 else
902 code_dir=code
903 inputdir=input
904 ref_outp="output.txt"
905 EXECUTABLE="mitgcmuv"
906 fi
907
908 if test "x$TESTDIRS" = x ; then
909 LIST=`scandirs results/$ref_outp`
910 else
911 #- expand group of experiments:
912 LIST=" "
913 for xx in $TESTDIRS
914 do
915 case $xx in
916 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
917 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
918 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
919 ;;
920 'tutorials')
921 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
922 *) LIST=${LIST}" "$xx ;;
923 esac
924 done
925 fi
926 #echo 'LIST='${LIST}'<'
927 #- skip dirs, remove duplicate and non-directory:
928 TESTDIRS=" "
929 count=0
930 for xx in $LIST
931 do
932 yy=`echo $SKIPDIRS | grep -c $xx`
933 if test $yy = 0 ; then
934 if test -d $xx ; then
935 yy=`echo $TESTDIRS | grep -c $xx`
936 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
937 else count=1 ;
938 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
939 fi
940 else
941 if test $count = 1 ; then echo -n ", \"$xx\""
942 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
943 fi
944 fi
945 done
946 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
947 #echo 'TESTDIRS='${TESTDIRS}'<'
948
949 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
950 OPTFILE=$MITGCM_OF
951 fi
952
953 OUTPUTFILE=$ref_outp
954 if test "x$COMMAND" = x ; then
955 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
956 fi
957 if test "x$MPI" = xt ; then
958 OUTPUTFILE="STDOUT.0000"
959 fi
960
961 echo "OK (COMMAND= $COMMAND )"
962
963 # set the Default List of output variables to be checked:
964 # (use default or load experiment-specific list from file "tr_checklist")
965 # content : 1rst = main variable used to decide if it pass or FAIL
966 # others = number of matching digits to be printed in summary.txt
967 if test "x$ADM" = x ; then
968 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
969 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
970 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
971 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
972 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
973 else
974 DEF_CHECK_LIST='Grad Cost Grad'
975 EMPTY_RESULTS='.. ..'
976 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
977 fi
978
979 # create the FORTRAN comparison code
980 createcodelet
981
982 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
983 if test "x$ADDRESSES" = x ; then
984 echo "skipping mpack build"
985 else
986 build_mpack
987 fi
988
989 # Create a uniquely named directory to store results
990 CMDLINE=$0
991 for xx in "$@" ; do nw=`echo $xx | wc -w`
992 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
993 else CMDLINE="$CMDLINE '$xx'" ; fi
994 done
995 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
996 MACH=`hostname`
997 UNAMEA=`uname -a`
998 DATE=`date +%Y%m%d`
999 BASE="tr_"$MACH"_"$DATE"_"
1000 if test "x$OUTDIR" != x ; then
1001 BASE="tr_"$OUTDIR"_"$DATE"_"
1002 fi
1003 DNUM=0
1004 DRESULTS="$BASE$DNUM"
1005 while test -e $DRESULTS ; do
1006 DNUM=$(( $DNUM + 1 ))
1007 DRESULTS="$BASE$DNUM"
1008 done
1009 mkdir $DRESULTS
1010 RETVAL=$?
1011 if test "x$RETVAL" != x0 ; then
1012 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1013 exit 1
1014 fi
1015 SUMMARY="$DRESULTS/summary.txt"
1016 start_date=`date`
1017 echo $start_date > $SUMMARY
1018 echo 'run:' $CMDLINE >> $SUMMARY
1019 echo 'on :' $UNAMEA >> $SUMMARY
1020
1021 of_path=
1022 if test "x$OPTFILE" != xNONE ; then
1023 if test -r $OPTFILE ; then
1024 # get the path
1025 path=${OPTFILE%/*}
1026 if test "x$path" = x ; then
1027 of_path=`pwd`
1028 else
1029 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1030 fi
1031 file=${OPTFILE##*/}
1032 OPTFILE=$of_path/$file
1033 cp $OPTFILE $DRESULTS
1034 echo >> $SUMMARY
1035 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1036 else
1037 echo | tee $SUMMARY
1038 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1039 exit 1
1040 fi
1041 else
1042 echo >> $SUMMARY
1043 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1044 echo " so the genmake default will be used." >> $SUMMARY
1045 fi
1046 echo
1047 echo >> $SUMMARY
1048 if test "x$ADM" = x ; then
1049 if [ $MATCH_CRIT -lt 10 ] ;
1050 then line_0="default "$MATCH_CRIT ;
1051 else line_0="default "$MATCH_CRIT ; fi
1052 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1053 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1054 line_1="G D M c m s m s m s m s"
1055 line_2="E p a R g m m e . m m e . m m e . m m e ."
1056 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1057 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1058 for ii in $PTRACERS_NUM ; do
1059 line_0="$line_0 --PTR 0"$ii"--"
1060 line_1="$line_1 m s"
1061 line_2="$line_2 m m e ."
1062 line_3="$line_3 i a a d"
1063 line_4="$line_4 n x n ."
1064 done
1065 echo "$line_0" | tee -a $SUMMARY
1066 echo "$line_1" | tee -a $SUMMARY
1067 echo "$line_2" | tee -a $SUMMARY
1068 echo "$line_3" | tee -a $SUMMARY
1069 echo "$line_4" | tee -a $SUMMARY
1070 echo " " | tee -a $SUMMARY
1071 else
1072 echo "ADJOINT=true" >> $SUMMARY
1073 echo >> $SUMMARY
1074 if [ $MATCH_CRIT -lt 10 ] ;
1075 then line_0="default "$MATCH_CRIT ;
1076 else line_0="default "$MATCH_CRIT ; fi
1077 echo "$line_0" | tee -a $SUMMARY
1078 cat << EOF | tee -a $SUMMARY
1079 G D M C G
1080 E p a R o r
1081 N n k u s a
1082 2 d e n t d
1083
1084 EOF
1085 fi
1086
1087 # ...and each test directory...
1088 for dir in $TESTDIRS ; do
1089
1090 # set builddir & rundir:
1091 builddir="build"
1092 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1093 rundir="run"
1094 if test ! -d $dir/$rundir ; then
1095 rundir=$builddir
1096 fi
1097 CODE_DIR=$dir/$code_dir
1098 BUILD_DIR=$dir/$builddir
1099
1100 # Cleanup only!
1101 if test "x$CLEANUP" = xt ; then
1102 if test -r $BUILD_DIR/Makefile ; then
1103 echo ' ------ clean dir:' $dir/$builddir
1104 ( cd $BUILD_DIR ; make CLEAN )
1105 fi
1106 if test -d $dir/$rundir/CVS ; then
1107 echo ' ------ clean dir:' $dir/$rundir
1108 run_clean $dir/$rundir
1109 fi
1110 (
1111 cd $dir
1112 rm -rf tr_run.*
1113 )
1114 continue
1115 fi
1116
1117 # Verify that the testdir exists and contains previous
1118 # results in the correct location--or skip this directory!
1119 fout=$dir"/results/"$ref_outp
1120 if test ! -r $fout ; then
1121 echo "can't read \"$fout\" -- skipping $dir"
1122 continue
1123 fi
1124
1125 # Check for specific files for particular type of run
1126
1127 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1128 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1129 continue
1130 fi
1131 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1132 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1133 continue
1134 fi
1135
1136 # Check whether there are "extra runs" for this testdir
1137 extra_runs=
1138 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1139 #echo "ex_run_dirs='$ex_run_dirs'"
1140 for exd in $ex_run_dirs ; do
1141 name=`echo $exd | sed -e "s/$inputdir\.//"`
1142 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1143 outf="$dir/results/$refExOut"
1144 if test -f $outf -a -r $outf ; then
1145 if test "x$MULTI_THREAD" = "xt" ; then
1146 if test -r $dir"/"$exd"/eedata.mth" ; then
1147 extra_runs="$extra_runs $name"
1148 #else echo $dir"/"$exd"/eedata.mth: not found"
1149 fi
1150 else
1151 extra_runs="$extra_runs $name"
1152 fi
1153 fi
1154 done
1155
1156 echo "-------------------------------------------------------------------------------"
1157 echo
1158 if test "x$extra_runs" = "x" ; then
1159 echo "Experiment: $dir"
1160 else
1161 echo "Experiment: $dir ; extra_runs=$extra_runs"
1162 fi
1163 echo
1164 unset genmake makedepend make run
1165 results=$EMPTY_RESULTS
1166
1167 # Create an output dir for each OPTFILE/tdir combination
1168 rel_CDIR=$DRESULTS"/"$dir
1169 mkdir $rel_CDIR
1170 CDIR=`pwd`"/$rel_CDIR"
1171
1172 if test "x$CLEANUP" = xt ; then
1173 echo '====>>> this is to check that we never go through this part <<< ==='
1174 makeclean $dir/$builddir \
1175 && run_clean $dir/$rundir
1176 else
1177 genmakemodel $dir/$builddir && genmake=Y \
1178 && makeclean $dir/$builddir \
1179 && run_clean $dir/$rundir \
1180 && symlink_mpifiles $dir $code_dir $builddir \
1181 && makedependmodel $dir/$builddir && makedepend=Y \
1182 && makemodel $dir/$builddir && make=Y \
1183 && linkdata $dir/$rundir $inputdir input \
1184 && runmodel $dir/$rundir && run=Y \
1185 && results=`testoutput_run $dir $rundir $ref_outp`
1186 fi
1187
1188 echo
1189 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1190 echo
1191 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1192 touch $CDIR"/summary.txt"
1193 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1194 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1195 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1196 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1197 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1198 if test "x$ADM" = xt ; then
1199 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1200 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1201 >> $CDIR"/summary.txt"
1202 fi
1203
1204 for ex in $extra_runs ; do
1205 unset run
1206 results=$EMPTY_RESULTS
1207 # reference output file
1208 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1209 # Create an output dir for each OPTFILE/tdir.ex combination
1210 rel_CDIR=$DRESULTS"/"$dir"."$ex
1211 mkdir $rel_CDIR
1212 CDIR=`pwd`"/$rel_CDIR"
1213 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1214 run_clean $dir/tr_run.$ex
1215 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1216 runmodel $dir/tr_run.$ex && run=Y \
1217 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1218 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1219 fres="$fres.$ex"
1220 echo
1221 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1222 touch $CDIR"/summary.txt"
1223 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1224 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1225 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1226 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1227 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1228 if test "x$ADM" = xt ; then
1229 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1230 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1231 >> $CDIR"/summary.txt"
1232 fi
1233 if test "x$POSTCLEAN" = xt ; then
1234 run_clean $dir/tr_run.$ex
1235 fi
1236 done
1237
1238 #postclean $dir/$builddir
1239 if test "x$POSTCLEAN" = xt ; then
1240 makeclean $dir/$builddir \
1241 && run_clean $dir/$rundir
1242 fi
1243
1244 echo "-------------------------------------------------------------------------------"
1245
1246 done
1247
1248 printf "Start time: " >> $SUMMARY
1249 echo "$start_date" >> $SUMMARY
1250 printf "End time: " >> $SUMMARY
1251 date >> $SUMMARY
1252
1253 # If addresses were supplied and mpack built successfully, then try
1254 # to send email using mpack.
1255 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1256 echo "No results email was sent."
1257 else
1258 if test "x$HAVE_MPACK" = xt ; then
1259 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1260 && gzip $DRESULTS".tar" \
1261 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1262 RETVAL=$?
1263 if test "x$RETVAL" != x0 ; then
1264 echo
1265 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1266 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1267 echo " summary of results from the directory \"$DRESULTS\"."
1268 echo
1269 else
1270 echo
1271 echo "An email containing results was sent to the following addresses:"
1272 echo " \"$ADDRESSES\""
1273 echo
1274 fi
1275 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1276 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1277 fi
1278 fi
1279
1280 rm -f tr_cmpnum.c tr_cmpnum
1281
1282 if test "x$CLEANUP" != xt ; then
1283 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1284 if test -e tr_out.txt ; then
1285 mv tr_out.txt tr_out.txt.old
1286 fi
1287 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1288 fi
1289
1290 if test "x$DELDIR" = xt ; then
1291 rm -rf $DRESULTS
1292 fi

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