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Revision 1.110 - (show annotations) (download)
Tue Dec 25 17:30:25 2007 UTC (16 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint59m
Changes since 1.109: +5 -2 lines
add to summary a print of command line and system info

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.109 2007/12/13 18:28:41 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi threaded (using eedata.mth)"
15 echo " (-mpi) compile and run using MPI"
16 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 echo " (DEF=\"-ieee\")"
18 echo " (-gsl) compile with \"-gsl\" flag"
19 echo " (-of=|-optfile=)STRING list of optfiles to use"
20 echo " (-a|-addr) STRING list of email recipients"
21 echo " (DEF=\"\" no email is sent)"
22 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
23 echo " (recognized groups: basic, tutorials)"
24 echo " (DEF=\"\" which test all)"
25 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
26 echo " (DEF=\"\" which test all)"
27 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
28 echo " Bourne-compatible \"sh\" shell"
29 echo " (DEF=\"\" for \"bash\")"
30 echo " (-adm|-ad) perform an adjoint run"
31 echo " (-command) STRING command to run"
32 echo " (DEF=\"make output.txt\")"
33 echo " (-m|-make) STRING command to use for \"make\""
34 echo " (DEF=\"make\")"
35 echo " (-odir) STRING used to build output directory name"
36 echo " (DEF=\"hostname\")"
37 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
38 echo " (DEF=\"1 2 3 4 5\")"
39 echo " (-match) NUMBER Matching Criteria (number of digits)"
40 echo " (DEF=\"12\")"
41 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
42 echo " (-clean) *ONLY* run \"make CLEAN\""
43 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
44 echo " (-nogenmake|-ng) skip the genmake stage"
45 echo " (-noclean|-nc) skip the \"make clean\" stage"
46 echo " (-nodepend|-nd) skip the \"make depend\" stage"
47 echo " (-deldir|-dd) on success, delete the output directory"
48 echo " (-ts) provide timing information per timestep"
49 echo " (-papis) provide MFlop/s per timestep using PAPI"
50 echo " (-pcls) provide MFlop/s per timestep using PCL"
51 echo
52 echo "and where STRING can be a whitespace-delimited list"
53 echo "such as:"
54 echo
55 echo " -t 'exp0 exp2 exp3' "
56 echo " -addr='abc@123.com testing@home.org'"
57 echo
58 echo "provided that the expression is properly quoted within the current"
59 echo "shell (note the use of single quotes to protect white space)."
60 echo
61 exit 1
62 }
63
64 # build the mpack utility
65 build_mpack()
66 {
67 printf "building the mpack utility... "
68 if test ! -x "$MPACKDIR/mpack" ; then
69 if test ! -d $MPACKDIR ; then
70 echo
71 echo "Error: can't find \"$MPACKDIR\""
72 echo " are you sure this program is being run in the correct "
73 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
74 echo
75 HAVE_MPACK=f
76 fi
77 printf "building mpack... "
78 if test "x$CC" = x ; then
79 export CC=cc
80 fi
81 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
82 RETVAL=$?
83 if test "x$RETVAL" != x0 ; then
84 echo
85 echo "Error building the mpack tools at: $MPACK_DIR"
86 echo
87 HAVE_MPACK=f
88 else
89 rm -f tr_build_mpack.out
90 HAVE_MPACK=t
91 fi
92 else
93 HAVE_MPACK=t
94 fi
95 echo "OK"
96 }
97
98 testoutput_var()
99 {
100 # testoutput_var dir s1 label subdir reference_output
101 #
102 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
103 # with same output from reference file $dir/results/$reference_output
104 # using search strings s1 and text label
105
106 if [ $debug -gt 0 ]; then
107 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
108 fi
109 if [ -r $1/$4/$OUTPUTFILE ]; then
110 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
111 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
112 if [ $lncntA -lt 2 ]; then
113 if [ $verbose -gt 0 ]; then
114 echo Not enough lines of output when searching for "$2" 1>&2
115 fi
116 return 99
117 fi
118 else
119 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
120 return 99
121 fi
122 if [ $debug -gt 0 ]; then
123 echo testoutput_var: grep "$2" $1/results/$5 1>&2
124 fi
125 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
126 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
127 if [ $lncntB -lt 2 ]; then
128 if [ $verbose -gt 0 ]; then
129 echo Not enough lines of output when searching for "$2" 1>&2
130 fi
131 return 99
132 fi
133 if [ $lncntA -ne $lncntB ]; then
134 if [ $verbose -gt 0 ]; then
135 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
136 fi
137 return 99
138 fi
139 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
140 if [ $has_nan -gt 0 ] ; then
141 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
142 return 99
143 fi
144 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
145 if [ $has_inf -gt 0 ] ; then
146 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
147 return 99
148 fi
149 if [ $debug -gt 0 ]; then
150 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
151 fi
152 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
153 if [ $debug -gt 0 ]; then
154 echo testoutput_var: compare_lines 1>&2
155 fi
156 if [ $verbose -gt 1 ]; then
157 cat tmp3.txt 1>&2
158 fi
159 echo "-1" >> tmp3.txt
160 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
161 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
162 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
163 if [ $digits_of_similarity -eq 99 ]; then
164 if [ $verbose -gt 0 ]; then
165 echo testoutput_var: No comparison was available for \"$3\" 1>&2
166 fi
167 digits_of_similarity=99
168 else
169 if [ $verbose -gt 0 ]; then
170 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
171 fi
172 fi
173 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
174
175 return $digits_of_similarity
176 }
177
178 check_for_add_mon_output()
179 {
180 # Check for additional types of monitor output
181 if test "x$1" = x ; then
182 return
183 fi
184
185 for ii in $PTRACERS_NUM ; do
186 eval "HAVE_PTR0"$ii"=f"
187 done
188
189 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
190 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
191 for ii in $PTRACERS_NUM ; do
192 for jj in $ptr_add ; do
193 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
194 tst=`grep $name $1 | wc -l | awk '{print $1}'`
195 if test ! "x$tst" = x0 ; then
196 eval "HAVE_PTR0"$ii"=t"
197 fi
198 done
199 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
200 done
201 }
202
203 testoutput_run()
204 {
205 # testoutput_run directory subdir reference_output
206 #
207 # test output from 1 run in "directory"
208 # --> same processing for adjoint & forward test
209 # default list of output variables to be checked:
210 # 1rst : main variable used to decide if it pass or FAIL
211 # others : number of matching digits to be printed in summary.txt
212 listChk=$DEF_CHECK_LIST
213 # load experiment-specific list from file "tr_checklist" (if it exist)
214 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
215 sVar=`echo $listChk | awk '{print $1}'`
216 # remove 1rst var and expand the list: + => min max mean s.d
217 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
218 | sed 's/+//g' | sed "s/^$sVar//"`
219 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
220 for ii in 1 2 3 4 5 6 7 8 9 ; do
221 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
222 #echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
223 if test "x$tst" != xt ; then listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` ; fi
224 done
225 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){t+=($i==$1)}; print t }'`
226 if test $tst != 1 ; then
227 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
228 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
229 echo "==> WARNING: in checked list:" $listVar 1>&2
230 #- put it back once:
231 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
232 fi
233 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
234 echo "listVar='$listVar'" > $CDIR"/summary.txt"
235 allargs=""
236 for xx in $listVar
237 do
238 case $xx in
239 'PS') if [ $debug -gt 0 ]
240 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
241 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
242 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
243 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
244 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
245 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
246 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
247 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
248 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
249 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
250 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
251 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
252 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
253 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
254 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
255 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
256 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
257 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
258 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
259 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
260 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
261 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
262 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
263 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
264 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
265 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
266 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
267 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
268 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
269 'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
270 'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
271 'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
272 'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
273 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
274 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
275 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
276 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
277 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
278 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;;
279 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;;
280 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;;
281 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
282 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
283 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
284 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
285 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
286 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
287 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
288 esac
289 if test $xx = $sVar
290 then allargs="$allargs > $yy <"
291 else allargs="$allargs $yy"
292 fi
293 done
294
295 nbVar=`echo $listVar | awk '{print NF}'`
296 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
297 #-- fill line (up to standard length) with dot:
298 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
299 echo $allargs $adNul
300 else
301 echo $allargs
302 fi
303 # <-- same processing for adjoint & forward test
304 }
305
306 genmakemodel()
307 {
308 # genmakemodel directory
309 if test "x$NOGENMAKE" = xt ; then
310 echo "genmake skipped!"
311 else
312 if test "x$BASH" = x ; then
313 GENMAKE2="../../../tools/genmake2"
314 else
315 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
316 fi
317 (
318 cd $1;
319 command="$GENMAKE2 -ds -m $MAKE"
320 if test "x$ADM" = x ; then
321 command="$command --mods=../code"
322 else
323 command="$command --mods=../code_ad"
324 fi
325 if test "x$OPTFILE" != xNONE ; then
326 command="$command --optfile=$OPTFILE"
327 fi
328 if test "x$IEEE" != x ; then
329 command="$command -ieee"
330 fi
331 if test "x$GSL" = xt ; then
332 command="$command -gsl"
333 fi
334 if test "x$MPI" = xt ; then
335 command="$command -mpi"
336 fi
337 if test "x$TS" = xt ; then
338 command="$command -ts"
339 fi
340 if test "x$PAPIS" = xt ; then
341 command="$command -papis"
342 else
343 if test "x$PCLS" = xt ; then
344 command="$command -pcls"
345 fi
346 fi
347 printf 'genmake ... ' 1>&2
348 $command > make.log 2>&1
349 RETVAL=$?
350 # Reduce the size of the testing emails!
351 head -100 Makefile > $CDIR/Makefile_head
352 if test "x$RETVAL" != x0 ; then
353 tail make.log
354 echo "genmakemodel: genmake failed" 1>&2
355 cp genmake_* make.log $CDIR
356 return 1
357 else
358 echo "successful" 1>&2
359 fi
360 )
361 fi
362 }
363
364 makeclean()
365 {
366 # makeclean directory
367 if test "x$NOCLEAN" = xt ; then
368 echo "make Clean skipped!"
369 else
370 (
371 cd $1;
372 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
373 if test -r Makefile ; then
374 printf 'clean build-dir: make Clean ... ' 2>&1
375 $MAKE Clean >> make.log 2>&1
376 RETVAL=$?
377 if test "x$RETVAL" != x0 ; then
378 tail make.log
379 echo "makeclean: \"make Clean\" failed" 1>&2
380 cp make.log $CDIR"/make.log"
381 return 1
382 fi
383 fi
384 echo successful 1>&2
385 exit 0
386 )
387 fi
388 }
389
390 run_clean()
391 {
392 # run_clean directory
393 if test "x$NOCLEAN" = xt ; then
394 echo "run_clean skipped!"
395 else
396 (
397 cd $1;
398 printf 'clean run-dir ... ' 2>&1
399 # part of what is done after "make clean" when doing "make CLEAN"
400 find . -name "*.meta" -exec rm {} \;
401 find . -name "*.data" -exec rm {} \;
402 find . -name "fort.*" -exec rm {} \;
403 find . -type l -exec rm {} \;
404 rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
405 rm -rf mnc_test_*
406 rm -f *_MIT_CE_000.opt0000 costfunction*0000
407 echo successful 1>&2
408 exit 0
409 )
410 fi
411 }
412
413 makedependmodel()
414 {
415 # makedependmodel directory
416 if test "x$NODEPEND" = xt ; then
417 echo "make depend skipped!"
418 else
419 (
420 cd $1;
421 printf 'make depend ... ' 1>&2
422 $MAKE depend >> make.log 2>&1
423 RETVAL=$?
424 if test "x$RETVAL" != x0 ; then
425 tail make.log
426 echo "makedependmodel: make depend failed" 1>&2
427 cp make.log $CDIR"/make.log"
428 return 1
429 else
430 echo successful 1>&2
431 fi
432 )
433 fi
434 }
435
436 makemodel()
437 {
438 # makemodel directory
439 (
440 cd $1;
441 if test -r Makefile ; then
442 printf 'make ... ' 1>&2
443 if test "x$ADM" = x ; then
444 if test "x$JOBS" = x ; then
445 $MAKE >> make.log 2>&1
446 else
447 $MAKE -j $JOBS >> make.log 2>&1
448 fi
449 else
450 $MAKE adall >> make.log 2>&1
451 fi
452 RETVAL=$?
453 if test "x$RETVAL" != x0 ; then
454 tail make.log
455 echo failed 1>&2
456 cp make.log $CDIR"/make.log"
457 return 1
458 else
459 echo successful 1>&2
460 fi
461 fi
462 )
463 }
464
465 symlink_mpifiles()
466 {
467 # Put special links so that MPI specific files are used
468 # This MUST be invoked between makeclean and makelinks because
469 # the Makefile will link to non-mpi files by default
470
471 dir=$1
472 code_dir=$2
473 BUILD_DIR=$dir/$3
474 CODE_DIR=$dir/$code_dir
475
476 # These are files that should replace their counter-part when using -mpi
477 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
478
479 # Is this an MPI run?
480 if test "x$MPI" = xt ; then
481 # YES: We symbolically link these files to the build
482 # dir so long as there is no real file in place
483 for ii in $MPI_FILES ; do
484 i=`echo $ii | sed 's:^\./::'`
485 name=`echo $i | sed 's:_mpi::' `
486 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
487 RETVAL=$?
488 if test "x$RETVAL" != x0 ; then
489 if ! test -f $BUILD_DIR/$i ; then
490 #echo Linking $name to $i
491 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
492 fi
493 fi
494 done
495 else
496 # NO: We undo any _mpi symbolically linked files
497 for ii in $MPI_FILES ; do
498 i=`echo $ii | sed 's:^\./::'`
499 name=`echo $i | sed 's:_mpi::' `
500 if test -L $BUILD_DIR/$name ; then
501 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
502 RETVAL=$?
503 if test "x$RETVAL" = x0 ; then
504 #echo Un-linking $name from $linktarg
505 rm -f $BUILD_DIR/$name
506 fi
507 fi
508 done
509 fi
510
511 }
512
513 linkdata()
514 {
515 # linkdata run_dir input_dir_1 input_dir_2 ...
516 #
517 # symbolically link data files to run directory
518 if test -d $1 ; then
519 (
520 cd $1 ; shift
521 if test -r "../"$1"/eedata.mth" ; then
522 # found eedata.mth in 1rst input dir and it is readable
523 if test "x$MULTI_THREAD" = "xt" ; then
524 # multi-threaded test: remove symbolic link & link eedata.mth
525 if test -h eedata ; then rm -f eedata ; fi
526 if test ! -r eedata ; then
527 ln -sf "../"$1"/eedata.mth" eedata ;
528 printf 'eedata.mth ' 1>&2
529 fi
530 else
531 # not multi-threaded test: remove eedata symbolic link
532 if test -h eedata ; then rm -f eedata ; fi
533 fi
534 fi
535 prevDir='NONE'
536 for ldir in $* ; do
537 if test -d "../"$ldir -a $ldir != $prevDir ; then
538 printf 'ldir='${ldir} 1>&2
539 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
540 for i in $files ; do
541 if test ! -d "../"$ldir/$i ; then
542 if test ! -r $i ; then
543 printf ' '$i 1>&2
544 ln -sf "../"$ldir"/"$i $i
545 fi
546 fi
547 done
548 if test -x "../"$ldir"/"prepare_run ; then
549 "../"$ldir"/"prepare_run
550 fi
551 printf ' ; ' 1>&2
552 fi
553 prevDir=$ldir
554 done
555 )
556 fi
557 }
558
559 runmodel()
560 {
561 # runmodel directory
562 #
563 # runs "$COMMAND in "directory"
564 # (where "$COMMAND" is relative to "directory")
565 (
566 cd $1
567 printf 'runmodel in %s ...' $1 1>&2
568 # make output.txt
569 echo
570 if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
571 diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
572 outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; rm -f run.log ; fi
573 fi
574 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
575 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
576 ln -sf "../"$builddir"/"$EXECUTABLE .
577 fi
578 if test ! -x $EXECUTABLE ; then
579 rm -f run.log ; touch run.log
580 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
581 echo " no executable:" $EXECUTABLE >> run.log
582 RETVAL=8
583 ENDVAL=-1
584 else
585 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
586 # output do not exist or is older than executable:
587 rm -f run.log ; touch run.log
588 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
589 ( eval $COMMAND ) >> run.log 2>&1
590 RETVAL=$?
591 else
592 RETVAL=0
593 if test -f run.log ; then
594 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
595 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
596 else
597 touch run.log
598 if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
599 echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
600 echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
601 fi
602 fi
603 ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
604 fi
605 rm -f run.log_00
606 #if test "x$RETVAL" = x0 ; then
607 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
608 tail run.log
609 echo successful 1>&2
610 # === Reduce the size of the testing emails!
611 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
612 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
613 return 0
614 else
615 tail run.log
616 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
617 cp run.log $CDIR"/run.log"
618 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
619 return 1
620 fi
621 )
622 }
623
624 createcodelet()
625 {
626 # create codelet for comparing model output
627
628 printf "creating the comparison code... "
629 cat > tr_cmpnum.c <<EOF
630 #include <stdio.h>
631 #include <math.h>
632 int main( int argc, char** argv ) {
633 int linnum,cmplin,best,lncnt;
634 double a,b,abave,relerr;
635 best = -22;
636 lncnt = 0;
637 while( 1 & ( (lncnt+=1) < 999 ) ) {
638 scanf("%d", &linnum);
639 if (linnum == -1) break;
640 scanf("%lf", &a); scanf("%lf", &b);
641 abave = 0.5*(fabs(a)+fabs(b));
642 if ( abave == abave ) {
643 if (abave > 0.0) {
644 relerr=fabs(a-b)/abave;
645 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
646 else { cmplin = -16 ; }
647 best = (best > cmplin) ? best : cmplin; }
648 else { cmplin = -22 ; }
649 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
650 }
651 else {
652 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
653 break; }
654 }
655 if (lncnt == 999) best=-29;
656 if (linnum != -1) best=-99;
657 printf("%d\n", -best);
658 return 0;
659 }
660 EOF
661 $CC -o tr_cmpnum tr_cmpnum.c -lm
662
663 if [ -x ./tr_cmpnum ]; then
664 echo "OK"
665 return 0
666 else
667 echo
668 echo "ERROR: failed to compile comparison code -- please specify"
669 echo " a C compiler using the CC environment variable."
670 exit 1
671 fi
672 }
673
674 formatresults()
675 {
676 # formatresults expt genmake depend make run results*
677
678 nm=$1
679 printf '%s %s %s %s' $2 $3 $4 $5
680 shift; shift; shift; shift; shift;
681 listPrt=$@
682 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
683 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
684 printf '%3s' $listPrt
685 # line below does not work on hp-ux_ia64 : do those substitutions later on
686 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
687
688 if [ $xx = '..' ]; then
689 printf ' N/O '
690 elif [ $xx = '--' ]; then
691 printf ' N/O '
692 elif [ $xx = 99 ]; then
693 printf ' N/O '
694 else
695 if [ $xx -ge $MATCH_CRIT ]; then
696 printf ' pass'
697 else
698 printf ' FAIL'
699 fi
700 fi
701 printf ' %s' $nm
702 printf '\n'
703
704 }
705
706 scandirs()
707 {
708 if [ $# -eq 1 ]; then
709 for arg in * ; do
710 test -f $arg/$1 && echo $arg
711 done
712 else
713 echo $*
714 fi
715 }
716
717
718 ###############################################################################
719
720
721 # Default properties
722 debug=0
723 verbose=1
724 clean=0
725
726 IEEE=true
727 if test "x$MITGCM_IEEE" != x ; then
728 IEEE=$MITGCM_IEEE
729 fi
730 GSL=f
731
732 CLEANUP=f
733 QUICK=f
734 NOGENMAKE=f
735 NOCLEAN=f
736 NODEPEND=f
737 POSTCLEAN=f
738
739 BASH=
740 OPTFILE=NONE
741 ADDRESSES=
742 TESTDIRS=
743 SKIPDIRS=
744 MPACKDIR="../tools/mpack-1.6"
745 HAVE_MPACK=
746 MPACK="$MPACKDIR/mpack"
747 COMMAND=
748 if test "x$MAKE" = x ; then
749 MAKE=make
750 fi
751 if test "x$CC" = x ; then
752 CC=cc
753 fi
754 JOBS=
755 MPI=f
756 MULTI_THREAD=f
757 OUTDIR=
758 DELDIR=
759
760 ADM=
761
762 # Additional monitor types
763 PTRACERS_NUM="1 2 3 4 5"
764
765 MATCH_CRIT=13
766
767 printf "parsing options... "
768
769 ac_prev=
770 for ac_option ; do
771
772 # If the previous option needs an argument, assign it.
773 if test -n "$ac_prev"; then
774 eval "$ac_prev=\$ac_option"
775 ac_prev=
776 continue
777 fi
778
779 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
780
781 case $ac_option in
782
783 -help | --help | -h | --h)
784 usage ;;
785
786 -optfile | --optfile | -of | --of)
787 ac_prev=OPTFILE ;;
788 -optfile=* | --optfile=* | -of=* | --of=*)
789 OPTFILE=$ac_optarg ;;
790
791 -addr | --addr | -a | --a)
792 ac_prev=ADDRESSES ;;
793 -addr=* | --addr=*)
794 ADDRESSES=$ac_optarg ;;
795
796 -tdir | --tdir | -t | --t)
797 ac_prev=TESTDIRS ;;
798 -tdir=* | --tdir=*)
799 TESTDIRS=$ac_optarg ;;
800
801 -skipdir | --skipdir | -skd | --skd)
802 ac_prev=SKIPDIRS ;;
803 -skipdir=* | --skipdir=*)
804 SKIPDIRS=$ac_optarg ;;
805
806 -bash | --bash | -b | --b)
807 ac_prev=BASH ;;
808 -bash=* | --bash=*)
809 BASH=$ac_optarg ;;
810
811 -command | --command | -c | --c)
812 ac_prev=COMMAND ;;
813 -command=* | --command=*)
814 COMMAND=$ac_optarg ;;
815
816 -make | --make | -m | --m)
817 ac_prev=MAKE ;;
818 -make=* | --make=*)
819 MAKE=$ac_optarg ;;
820
821 -odir | --odir)
822 ac_prev=OUTDIR ;;
823 -odir=* | --odir=*)
824 OUTDIR=$ac_optarg ;;
825
826 -ptracers | --ptracers | -ptr | --ptr)
827 ac_prev=PTRACERS_NUM ;;
828 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
829 PTRACERS_NUM=$ac_optarg ;;
830
831 -match | --match ) ac_prev=MATCH_CRIT ;;
832 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
833
834 -j) ac_prev=JOBS ;;
835 -j=*) JOBS=$ac_optarg ;;
836
837 -clean | --clean)
838 CLEANUP=t ; DELDIR=t ;;
839
840 -quick | --quick | -q | --q)
841 QUICK=t ;;
842 -nogenmake | --nogenmake | -ng | --ng)
843 NOGENMAKE=t ;;
844 -noclean | --noclean | -nc | --nc)
845 NOCLEAN=t ;;
846 -nodepend | --nodepend | -nd | --nd)
847 NODEPEND=t ;;
848
849 -postclean | --postclean | -pc | --pc)
850 POSTCLEAN=t ;;
851
852 -mpi) MPI=t ;;
853
854 -mth) MULTI_THREAD=t ;;
855
856 -adm | -ad) ADM=t ;;
857
858 -ieee) IEEE=true ;;
859 -noieee) IEEE= ;;
860 -gsl) GSL=t ;;
861
862 -verbose) verbose=2 ;;
863 -debug) debug=1 ;;
864 -quiet) verbose=0 ;;
865
866 -deldir | -dd) DELDIR=t ;;
867
868 -ts) TS=t;;
869
870 -papis) PAPIS=t;;
871
872 -pcls) PCL=t;;
873
874 -*)
875 echo "Error: unrecognized option: "$ac_option
876 usage
877 ;;
878
879 *)
880 echo "Error: unrecognized argument: "$ac_option
881 usage
882 ;;
883
884 esac
885
886 done
887
888 if test "x$QUICK" = xt ; then
889 NOGENMAKE=t
890 NOCLEAN=t
891 NODEPEND=t
892 fi
893
894 #- setting for forward or ADM testing
895 if test "x$ADM" = xt ; then
896 code_dir=code_ad
897 inputdir=input_ad
898 ref_outp="output_adm.txt"
899 EXECUTABLE="mitgcmuv_ad"
900 else
901 code_dir=code
902 inputdir=input
903 ref_outp="output.txt"
904 EXECUTABLE="mitgcmuv"
905 fi
906
907 if test "x$TESTDIRS" = x ; then
908 LIST=`scandirs results/$ref_outp`
909 else
910 #- expand group of experiments:
911 LIST=" "
912 for xx in $TESTDIRS
913 do
914 case $xx in
915 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
916 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
917 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
918 ;;
919 'tutorials')
920 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
921 *) LIST=${LIST}" "$xx ;;
922 esac
923 done
924 fi
925 #echo 'LIST='${LIST}'<'
926 #- skip dirs, remove duplicate and non-directory:
927 TESTDIRS=" "
928 count=0
929 for xx in $LIST
930 do
931 yy=`echo $SKIPDIRS | grep -c $xx`
932 if test $yy = 0 ; then
933 if test -d $xx ; then
934 yy=`echo $TESTDIRS | grep -c $xx`
935 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
936 else count=1 ;
937 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
938 fi
939 else
940 if test $count = 1 ; then echo -n ", \"$xx\""
941 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
942 fi
943 fi
944 done
945 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
946 #echo 'TESTDIRS='${TESTDIRS}'<'
947
948 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
949 OPTFILE=$MITGCM_OF
950 fi
951
952 OUTPUTFILE=$ref_outp
953 if test "x$COMMAND" = x ; then
954 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
955 fi
956 if test "x$MPI" = xt ; then
957 OUTPUTFILE="STDOUT.0000"
958 fi
959
960 echo "OK (COMMAND= $COMMAND )"
961
962 # set the Default List of output variables to be checked:
963 # (use default or load experiment-specific list from file "tr_checklist")
964 # content : 1rst = main variable used to decide if it pass or FAIL
965 # others = number of matching digits to be printed in summary.txt
966 if test "x$ADM" = x ; then
967 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
968 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
969 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
970 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
971 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
972 else
973 DEF_CHECK_LIST='Grad Cost Grad'
974 EMPTY_RESULTS='.. ..'
975 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
976 fi
977
978 # create the FORTRAN comparison code
979 createcodelet
980
981 # build the mpack utility
982 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
983 echo "skipping mpack build"
984 else
985 build_mpack
986 fi
987
988 # Create a uniquely named directory to store results
989 CMDLINE=$0
990 for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
991 MACH=`hostname`
992 UNAMEA=`uname -a`
993 DATE=`date +%Y%m%d`
994 BASE="tr_"$MACH"_"$DATE"_"
995 if test "x$OUTDIR" != x ; then
996 BASE="tr_"$OUTDIR"_"$DATE"_"
997 fi
998 DNUM=0
999 DRESULTS="$BASE$DNUM"
1000 while test -e $DRESULTS ; do
1001 DNUM=$(( $DNUM + 1 ))
1002 DRESULTS="$BASE$DNUM"
1003 done
1004 mkdir $DRESULTS
1005 RETVAL=$?
1006 if test "x$RETVAL" != x0 ; then
1007 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1008 exit 1
1009 fi
1010 SUMMARY="$DRESULTS/summary.txt"
1011 start_date=`date`
1012 echo $start_date > $SUMMARY
1013 echo 'run:' $CMDLINE >> $SUMMARY
1014 echo 'on :' $UNAMEA >> $SUMMARY
1015
1016 of_path=
1017 if test "x$OPTFILE" != xNONE ; then
1018 if test -r $OPTFILE ; then
1019 # get the path
1020 path=${OPTFILE%/*}
1021 if test "x$path" = x ; then
1022 of_path=`pwd`
1023 else
1024 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1025 fi
1026 file=${OPTFILE##*/}
1027 OPTFILE=$of_path/$file
1028 cp $OPTFILE $DRESULTS
1029 echo >> $SUMMARY
1030 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1031 else
1032 echo | tee $SUMMARY
1033 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1034 exit 1
1035 fi
1036 else
1037 echo >> $SUMMARY
1038 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1039 echo " so the genmake default will be used." >> $SUMMARY
1040 fi
1041 echo
1042 echo >> $SUMMARY
1043 if test "x$ADM" = x ; then
1044 if [ $MATCH_CRIT -lt 10 ] ;
1045 then line_0="default "$MATCH_CRIT ;
1046 else line_0="default "$MATCH_CRIT ; fi
1047 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1048 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1049 line_1="G D M c m s m s m s m s"
1050 line_2="E p a R g m m e . m m e . m m e . m m e ."
1051 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1052 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1053 for ii in $PTRACERS_NUM ; do
1054 # tst=`eval 'echo $HAVE_PTR0'$ii`
1055 # if test "x$tst" = xt ; then
1056 line_0="$line_0 --PTR 0"$ii"--"
1057 line_1="$line_1 m s"
1058 line_2="$line_2 m m e ."
1059 line_3="$line_3 i a a d"
1060 line_4="$line_4 n x n ."
1061 # fi
1062 done
1063 echo "$line_0" | tee -a $SUMMARY
1064 echo "$line_1" | tee -a $SUMMARY
1065 echo "$line_2" | tee -a $SUMMARY
1066 echo "$line_3" | tee -a $SUMMARY
1067 echo "$line_4" | tee -a $SUMMARY
1068 echo " " | tee -a $SUMMARY
1069 else
1070 echo "ADJOINT=true" >> $SUMMARY
1071 echo >> $SUMMARY
1072 if [ $MATCH_CRIT -lt 10 ] ;
1073 then line_0="default "$MATCH_CRIT ;
1074 else line_0="default "$MATCH_CRIT ; fi
1075 echo "$line_0" | tee -a $SUMMARY
1076 cat << EOF | tee -a $SUMMARY
1077 G D M C G
1078 E p a R o r
1079 N n k u s a
1080 2 d e n t d
1081
1082 EOF
1083 fi
1084
1085 # ...and each test directory...
1086 for dir in $TESTDIRS ; do
1087
1088 # set builddir & rundir:
1089 builddir="build"
1090 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1091 rundir="run"
1092 if test ! -d $dir/$rundir ; then
1093 rundir=$builddir
1094 fi
1095 CODE_DIR=$dir/$code_dir
1096 BUILD_DIR=$dir/$builddir
1097
1098 # Cleanup only!
1099 if test "x$CLEANUP" = xt ; then
1100 if test -r $BUILD_DIR/Makefile ; then
1101 echo ' ------ clean dir:' $dir/build
1102 ( cd $BUILD_DIR ; make CLEAN )
1103 fi
1104 if test -d $dir/$rundir/CVS ; then
1105 echo ' ------ clean dir:' $dir/$rundir
1106 run_clean $dir/$rundir
1107 fi
1108 (
1109 cd $dir
1110 rm -rf tr_run.*
1111 )
1112 continue
1113 fi
1114
1115 # Verify that the testdir exists and contains previous
1116 # results in the correct location--or skip this directory!
1117 fout=$dir"/results/"$ref_outp
1118 if test ! -r $fout ; then
1119 echo "can't read \"$fout\" -- skipping $dir"
1120 continue
1121 fi
1122 if test "x$ADM" = x ; then
1123 check_for_add_mon_output $fout
1124 fi
1125
1126 # Check for additional types of monitor output
1127
1128 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1129 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1130 continue
1131 fi
1132 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1133 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1134 continue
1135 fi
1136
1137 # Check whether there are "extra runs" for this testdir
1138 extra_runs=
1139 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1140 #echo "ex_run_dirs='$ex_run_dirs'"
1141 for exd in $ex_run_dirs ; do
1142 name=`echo $exd | sed -e "s/$inputdir\.//"`
1143 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1144 outf="$dir/results/$refExOut"
1145 if test -f $outf -a -r $outf ; then
1146 if test "x$MULTI_THREAD" = "xt" ; then
1147 if test -r $dir"/"$exd"/eedata.mth" ; then
1148 extra_runs="$extra_runs $name"
1149 #else echo $dir"/"$exd"/eedata.mth: not found"
1150 fi
1151 else
1152 extra_runs="$extra_runs $name"
1153 fi
1154 fi
1155 done
1156
1157 echo "-------------------------------------------------------------------------------"
1158 echo
1159 if test "x$extra_runs" = "x" ; then
1160 echo "Experiment: $dir"
1161 else
1162 echo "Experiment: $dir ; extra_runs=$extra_runs"
1163 fi
1164 echo
1165 unset genmake makedepend make run
1166 results=$EMPTY_RESULTS
1167
1168 # Create an output dir for each OPTFILE/tdir combination
1169 rel_CDIR=$DRESULTS"/"$dir
1170 mkdir $rel_CDIR
1171 CDIR=`pwd`"/$rel_CDIR"
1172
1173 if test "x$CLEANUP" = xt ; then
1174 echo '====>>> this is to check that we never go through this part <<< ==='
1175 makeclean $dir/$builddir \
1176 && run_clean $dir/$rundir
1177 else
1178 genmakemodel $dir/$builddir && genmake=Y \
1179 && makeclean $dir/$builddir \
1180 && run_clean $dir/$rundir \
1181 && symlink_mpifiles $dir $code_dir $builddir \
1182 && makedependmodel $dir/$builddir && makedepend=Y \
1183 && makemodel $dir/$builddir && make=Y \
1184 && linkdata $dir/$rundir $inputdir input \
1185 && runmodel $dir/$rundir && run=Y \
1186 && results=`testoutput_run $dir $rundir $ref_outp`
1187 fi
1188
1189 echo
1190 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1191 echo
1192 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1193 touch $CDIR"/summary.txt"
1194 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1195 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1196 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1197 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1198 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1199 if test "x$ADM" = xt ; then
1200 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1201 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1202 >> $CDIR"/summary.txt"
1203 fi
1204
1205 for ex in $extra_runs ; do
1206 unset run
1207 results=$EMPTY_RESULTS
1208 # reference output file
1209 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1210 # Create an output dir for each OPTFILE/tdir.ex combination
1211 rel_CDIR=$DRESULTS"/"$dir"."$ex
1212 mkdir $rel_CDIR
1213 CDIR=`pwd`"/$rel_CDIR"
1214 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1215 run_clean $dir/tr_run.$ex
1216 linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input
1217 runmodel $dir/tr_run.$ex && run=Y \
1218 && results=`testoutput_run $dir tr_run.$ex $refExOut`
1219 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1220 fres="$fres.$ex"
1221 echo
1222 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1223 touch $CDIR"/summary.txt"
1224 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1225 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1226 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1227 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1228 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1229 if test "x$ADM" = xt ; then
1230 head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt"
1231 grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \
1232 >> $CDIR"/summary.txt"
1233 fi
1234 if test "x$POSTCLEAN" = xt ; then
1235 run_clean $dir/tr_run.$ex
1236 fi
1237 done
1238
1239 #postclean $dir/$builddir
1240 if test "x$POSTCLEAN" = xt ; then
1241 makeclean $dir/$builddir \
1242 && run_clean $dir/$rundir
1243 fi
1244
1245 echo "-------------------------------------------------------------------------------"
1246
1247 done
1248
1249 printf "Start time: " >> $SUMMARY
1250 echo $start_date >> $SUMMARY
1251 printf "End time: " >> $SUMMARY
1252 date >> $SUMMARY
1253
1254 # If addresses were supplied and mpack built successfully, then try
1255 # to send email using mpack.
1256 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1257 echo "No results email was sent."
1258 else
1259 if test "x$HAVE_MPACK" = xt ; then
1260 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1261 && gzip $DRESULTS".tar" \
1262 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1263 RETVAL=$?
1264 if test "x$RETVAL" != x0 ; then
1265 echo
1266 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1267 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1268 echo " summary of results from the directory \"$DRESULTS\"."
1269 echo
1270 else
1271 echo
1272 echo "An email containing results was sent to the following addresses:"
1273 echo " \"$ADDRESSES\""
1274 echo
1275 fi
1276 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1277 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1278 fi
1279 fi
1280
1281 rm -f tr_cmpnum.c tr_cmpnum
1282
1283 if test "x$CLEANUP" != xt ; then
1284 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1285 if test -e tr_out.txt ; then
1286 mv tr_out.txt tr_out.txt.old
1287 fi
1288 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1289 fi
1290
1291 if test "x$DELDIR" = xt ; then
1292 rm -rf $DRESULTS
1293 fi

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