11 |
echo |
echo |
12 |
echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
14 |
echo " (-mpi) use MPI input files" |
echo " (-mth) run multi threaded (using eedata.mth)" |
15 |
|
echo " (-mpi) compile and run using MPI" |
16 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
17 |
echo " (DEF=\"-ieee\")" |
echo " (DEF=\"-ieee\")" |
18 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
echo " (-of=|-optfile=)STRING list of optfiles to use" |
19 |
echo " (-a|-addr) STRING list of email recipients" |
echo " (-a|-addr) STRING list of email recipients" |
20 |
echo " (DEF=\"edhill@mitgcm.org\")" |
echo " (DEF=\"edhill@mitgcm.org\")" |
21 |
echo " (-t|-tdir) STRING list of test dirs to use" |
echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
22 |
echo " (DEF=\"\" which builds all)" |
echo " (recognized groups: basic, tutorials)" |
23 |
|
echo " (DEF=\"\" which test all)" |
24 |
|
echo " (-skd|-skipdir) STRING list of exp. dirs to skip" |
25 |
|
echo " (DEF=\"\" which test all)" |
26 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
27 |
echo " Bourne-compatible \"sh\" shell" |
echo " Bourne-compatible \"sh\" shell" |
28 |
echo " (DEF=\"\" for \"bash\")" |
echo " (DEF=\"\" for \"bash\")" |
33 |
echo " (DEF=\"make\")" |
echo " (DEF=\"make\")" |
34 |
echo " (-odir) STRING used to build output directory name" |
echo " (-odir) STRING used to build output directory name" |
35 |
echo " (DEF=\"hostname\")" |
echo " (DEF=\"hostname\")" |
36 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
echo " (-ptr|-ptracers) STRING specify which ptracers to test" |
37 |
echo " (DEF=\"1 2 3 4 5\")" |
echo " (DEF=\"1 2 3 4 5\")" |
38 |
|
echo " (-match) NUMBER Matching Criteria (number of digits)" |
39 |
|
echo " (DEF=\"12\")" |
40 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
41 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
42 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
44 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
45 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
46 |
echo " (-deldir|-dd) on success, delete the output directory" |
echo " (-deldir|-dd) on success, delete the output directory" |
47 |
|
echo " (-ts) provide timing information per timestep" |
48 |
|
echo " (-papis) provide MFlop/s per timestep using PAPI" |
49 |
|
echo " (-pcls) provide MFlop/s per timestep using PCL" |
50 |
echo |
echo |
51 |
echo "and where STRING can be a whitespace-delimited list" |
echo "and where STRING can be a whitespace-delimited list" |
52 |
echo "such as:" |
echo "such as:" |
98 |
{ |
{ |
99 |
# testoutput_for_prop dir s1 label subdir extension |
# testoutput_for_prop dir s1 label subdir extension |
100 |
# |
# |
101 |
# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt |
102 |
# using search strings s1 and text label |
# using search strings s1 and text label |
103 |
|
|
104 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
105 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
106 |
fi |
fi |
107 |
if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
108 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
109 |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
110 |
if [ $lncntA -lt 3 ]; then |
if [ $lncntA -lt 3 ]; then |
111 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
114 |
return 99 |
return 99 |
115 |
fi |
fi |
116 |
else |
else |
117 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2 |
118 |
return 99 |
return 99 |
119 |
fi |
fi |
120 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
121 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2 |
122 |
fi |
fi |
123 |
grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt |
124 |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
125 |
if [ $lncntB -lt 3 ]; then |
if [ $lncntB -lt 3 ]; then |
126 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
136 |
fi |
fi |
137 |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
138 |
if [ $has_nan -gt 0 ] ; then |
if [ $has_nan -gt 0 ] ; then |
139 |
echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2 |
echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
140 |
return 99 |
return 99 |
141 |
fi |
fi |
142 |
has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
143 |
if [ $has_inf -gt 0 ] ; then |
if [ $has_inf -gt 0 ] ; then |
144 |
echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2 |
echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
145 |
return 99 |
return 99 |
146 |
fi |
fi |
147 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
157 |
echo "-1" >> tmp3.txt |
echo "-1" >> tmp3.txt |
158 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
159 |
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
160 |
digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
161 |
if [ $digits_of_similarity -eq 99 ]; then |
if [ $digits_of_similarity -eq 99 ]; then |
162 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
163 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
191 |
testoutput_ad() |
testoutput_ad() |
192 |
{ |
{ |
193 |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
194 |
grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt |
grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt |
195 |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
196 |
grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt |
grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt |
197 |
join t05.txt t15.txt > t5.txt |
join t05.txt t15.txt > t5.txt |
198 |
join t06.txt t16.txt > t6.txt |
join t06.txt t16.txt > t6.txt |
199 |
echo "-1" >> t5.txt |
echo "-1" >> t5.txt |
200 |
echo "-1" >> t6.txt |
echo "-1" >> t6.txt |
201 |
digits_5=`./tmp_cmpnum < t5.txt` |
digits_5=`./tr_cmpnum < t5.txt` |
202 |
digits_6=`./tmp_cmpnum < t6.txt` |
digits_6=`./tr_cmpnum < t6.txt` |
203 |
dashnum $digits_5 $digits_6 |
dashnum $digits_5 $digits_6 |
204 |
rm -f t[01][56].txt t[56].txt |
rm -f t[01][56].txt t[56].txt |
205 |
} |
} |
323 |
if test "x$MPI" = xt ; then |
if test "x$MPI" = xt ; then |
324 |
command="$command -mpi" |
command="$command -mpi" |
325 |
fi |
fi |
326 |
|
if test "x$TS" = xt ; then |
327 |
|
command="$command -ts" |
328 |
|
fi |
329 |
|
if test "x$PAPIS" = xt ; then |
330 |
|
command="$command -papis" |
331 |
|
else |
332 |
|
if test "x$PCLS" = xt ; then |
333 |
|
command="$command -pcls" |
334 |
|
fi |
335 |
|
fi |
336 |
printf 'genmake ... ' 1>&2 |
printf 'genmake ... ' 1>&2 |
337 |
$command > make.log 2>&1 |
$command > make.log 2>&1 |
338 |
RETVAL=$? |
RETVAL=$? |
354 |
{ |
{ |
355 |
# makeclean directory |
# makeclean directory |
356 |
if test "x$NOCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
357 |
echo "make CLEAN skipped!" |
echo "make Clean skipped!" |
358 |
else |
else |
359 |
( |
( |
360 |
cd $1; |
cd $1; |
361 |
if test -e output.txt ; then |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
|
rm -f output.txt |
|
|
fi |
|
|
printf 'make CLEAN ... ' 2>&1 |
|
362 |
if test -r Makefile ; then |
if test -r Makefile ; then |
363 |
$MAKE CLEAN >> make.log 2>&1 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
364 |
|
$MAKE Clean >> make.log 2>&1 |
365 |
RETVAL=$? |
RETVAL=$? |
366 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
367 |
tail make.log |
tail make.log |
368 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
369 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
370 |
return 1 |
return 1 |
371 |
fi |
fi |
376 |
fi |
fi |
377 |
} |
} |
378 |
|
|
379 |
postclean() |
run_clean() |
380 |
{ |
{ |
381 |
# postclean directory |
# run_clean directory |
382 |
if test "x$POSTCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
383 |
|
echo "run_clean skipped!" |
384 |
|
else |
385 |
( |
( |
386 |
cd $1; |
cd $1; |
387 |
if test -r Makefile ; then |
printf 'clean run-dir ... ' 2>&1 |
388 |
$MAKE CLEAN >> /dev/null 2>&1 |
# part of what is done after "make clean" when doing "make CLEAN" |
389 |
fi |
find . -name "*.meta" -exec rm {} \; |
390 |
|
find . -name "*.data" -exec rm {} \; |
391 |
|
find . -name "fort.*" -exec rm {} \; |
392 |
|
find . -type l -exec rm {} \; |
393 |
|
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
394 |
|
rm -rf mnc_test_* |
395 |
|
echo successful 1>&2 |
396 |
exit 0 |
exit 0 |
397 |
) |
) |
398 |
fi |
fi |
500 |
|
|
501 |
linkdata() |
linkdata() |
502 |
{ |
{ |
503 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
504 |
# |
# |
505 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
506 |
if test "x$1" = x1 ; then |
if test -d $1 ; then |
507 |
( |
( |
508 |
cd $2 |
cd $1 ; shift |
509 |
if test "x$ADM" = x ; then |
if test -r "../"$1"/eedata.mth" ; then |
510 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
# found eedata.mth in 1rst input dir and it is readable |
511 |
for i in $files ; do |
if test "x$MULTI_THREAD" = "xt" ; then |
512 |
if test ! -d "../input/"$i -a ! -f $i ; then |
# multi-threaded test: remove symbolic link & link eedata.mth |
513 |
ln -sf "../input/"$i $i |
if test -h eedata ; then rm -f eedata ; fi |
514 |
fi |
if test ! -r eedata ; then |
515 |
done |
ln -sf "../"$1"/eedata.mth" eedata ; |
516 |
else |
printf 'eedata.mth ' 1>&2 |
|
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
|
|
for i in $files ; do |
|
|
if test ! -d "../input_ad/"$i ; then |
|
|
ln -sf "../input_ad/"$i $i |
|
517 |
fi |
fi |
518 |
done |
else |
519 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
# not multi-threaded test: remove eedata symbolic link |
520 |
for i in $files ; do |
if test -h eedata ; then rm -f eedata ; fi |
521 |
if test ! -d "../input/"$i ; then |
fi |
|
if test ! -r $i ; then |
|
|
ln -sf "../input/"$i $i |
|
|
fi |
|
|
fi |
|
|
done |
|
522 |
fi |
fi |
523 |
|
for ldir in $* ; do |
524 |
|
if test -d "../"$ldir ; then |
525 |
|
printf 'ldir='${ldir} 1>&2 |
526 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
527 |
|
for i in $files ; do |
528 |
|
if test ! -d "../"$ldir/$i ; then |
529 |
|
if test ! -r $i ; then |
530 |
|
printf ' '$i 1>&2 |
531 |
|
ln -sf "../"$ldir"/"$i $i |
532 |
|
fi |
533 |
|
fi |
534 |
|
done |
535 |
|
if test -x "../"$ldir"/"prepare_run ; then |
536 |
|
"../"$ldir"/"prepare_run |
537 |
|
fi |
538 |
|
printf ' ; ' 1>&2 |
539 |
|
fi |
540 |
|
done |
541 |
) |
) |
542 |
fi |
fi |
543 |
} |
} |
553 |
printf 'runmodel in %s ...' $1 1>&2 |
printf 'runmodel in %s ...' $1 1>&2 |
554 |
# make output.txt |
# make output.txt |
555 |
echo |
echo |
556 |
rm -f run.log |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
557 |
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00 |
558 |
( eval $COMMAND ) > run.log 2>&1 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
559 |
RETVAL=$? |
fi |
560 |
|
if test ! -x $EXECUTABLE ; then |
561 |
|
rm -f run.log ; touch run.log |
562 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
563 |
|
echo " no executable:" $EXECUTABLE >> run.log |
564 |
|
RETVAL=8 |
565 |
|
ENDVAL=-1 |
566 |
else |
else |
567 |
echo " $OUTPUTFILE is up to date " > run.log 2>&1 |
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
568 |
RETVAL=0 |
rm -f run.log ; touch run.log |
569 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
570 |
|
( eval $COMMAND ) >> run.log 2>&1 |
571 |
|
RETVAL=$? |
572 |
|
else |
573 |
|
RETVAL=0 |
574 |
|
if test -f run.log ; then |
575 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
576 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
577 |
|
else |
578 |
|
touch run.log |
579 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
580 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
581 |
|
echo " no previous run.log: assume NORMAL END" >> run.log 2>&1 |
582 |
|
fi |
583 |
|
fi |
584 |
|
ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
585 |
fi |
fi |
586 |
# echo "COMMAND='$COMMAND'" |
rm -f run.log_00 |
587 |
# echo "pwd='"`pwd`"'" |
#if test "x$RETVAL" = x0 ; then |
588 |
if test "x$RETVAL" = x0 ; then |
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
589 |
tail run.log |
tail run.log |
590 |
echo successful 1>&2 |
echo successful 1>&2 |
591 |
# === Reduce the size of the testing emails! |
# === Reduce the size of the testing emails! |
592 |
# if test "x$ADM" = x ; then |
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
|
# cp output.txt $CDIR"/output.txt" |
|
|
# else |
|
|
# cp output_adm.txt $CDIR"/output_adm.txt" |
|
|
# fi |
|
593 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
594 |
return 0 |
return 0 |
595 |
else |
else |
596 |
tail run.log |
tail run.log |
597 |
echo failed 1>&2 |
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
598 |
cp run.log $CDIR"/run.log" |
cp run.log $CDIR"/run.log" |
599 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
600 |
return 1 |
return 1 |
607 |
# create codelet for comparing model output |
# create codelet for comparing model output |
608 |
|
|
609 |
printf "creating the comparison code... " |
printf "creating the comparison code... " |
610 |
cat > tmp_cmpnum.c <<EOF |
cat > tr_cmpnum.c <<EOF |
611 |
#include <stdio.h> |
#include <stdio.h> |
612 |
#include <math.h> |
#include <math.h> |
613 |
int main( int argc, char** argv ) { |
int main( int argc, char** argv ) { |
614 |
int linnum,best,lncnt; |
int linnum,cmplin,best,lncnt; |
615 |
double a,b,abave,relerr; |
double a,b,abave,relerr; |
616 |
best = -22; |
best = -22; |
617 |
lncnt = 0; |
lncnt = 0; |
620 |
if (linnum == -1) break; |
if (linnum == -1) break; |
621 |
scanf("%lf", &a); scanf("%lf", &b); |
scanf("%lf", &a); scanf("%lf", &b); |
622 |
abave = 0.5*(fabs(a)+fabs(b)); |
abave = 0.5*(fabs(a)+fabs(b)); |
623 |
if (abave > 0.0) { |
if ( abave == abave ) { |
624 |
relerr=fabs(a-b)/abave; |
if (abave > 0.0) { |
625 |
if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); } |
relerr=fabs(a-b)/abave; |
626 |
else { linnum = -16 ; } |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
627 |
best = (best > linnum) ? best : linnum; |
else { cmplin = -16 ; } |
628 |
} |
best = (best > cmplin) ? best : cmplin; } |
629 |
|
else { cmplin = -22 ; } |
630 |
|
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
631 |
|
} |
632 |
|
else { |
633 |
|
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
634 |
|
break; } |
635 |
} |
} |
636 |
if (lncnt == 999) best=-29; |
if (lncnt == 999) best=-29; |
637 |
|
if (linnum != -1) best=-99; |
638 |
printf("%d\n", -best); |
printf("%d\n", -best); |
639 |
return 0; |
return 0; |
640 |
} |
} |
641 |
EOF |
EOF |
642 |
$CC -o tmp_cmpnum tmp_cmpnum.c -lm |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
643 |
|
|
644 |
if [ -x ./tmp_cmpnum ]; then |
if [ -x ./tr_cmpnum ]; then |
645 |
echo "OK" |
echo "OK" |
646 |
return 0 |
return 0 |
647 |
else |
else |
664 |
if [ $1 = '--' ]; then |
if [ $1 = '--' ]; then |
665 |
printf ' N/O ' |
printf ' N/O ' |
666 |
else |
else |
667 |
if [ $1 -gt 12 ]; then |
if [ $1 -ge $MATCH_CRIT ]; then |
668 |
printf ' pass' |
printf ' pass' |
669 |
else |
else |
670 |
printf ' FAIL' |
printf ' FAIL' |
675 |
|
|
676 |
} |
} |
677 |
|
|
|
show_help() |
|
|
{ |
|
|
cat - << EOF |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
|
|
|
|
|
-help|-h Show this help message |
|
|
-quiet Reduce the amount of output |
|
|
-verbose Produce copious amounts of output |
|
|
-debug Produce even more output which will mean nothing to most |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
|
|
-clean Do "make CLEAN" after compiling and testing. |
|
|
-cleanup Aggresively removes all model output, executables and object files |
|
|
and then exits. Use with care. |
|
|
|
|
|
Normal usage: |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
|
|
EOF |
|
|
} |
|
|
|
|
678 |
scandirs() |
scandirs() |
679 |
{ |
{ |
680 |
if [ $# -eq 1 ]; then |
if [ $# -eq 1 ]; then |
714 |
OPTFILE=NONE |
OPTFILE=NONE |
715 |
ADDRESSES= |
ADDRESSES= |
716 |
TESTDIRS= |
TESTDIRS= |
717 |
|
SKIPDIRS= |
718 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
719 |
HAVE_MPACK= |
HAVE_MPACK= |
720 |
MPACK="$MPACKDIR/mpack" |
MPACK="$MPACKDIR/mpack" |
727 |
fi |
fi |
728 |
JOBS= |
JOBS= |
729 |
MPI=f |
MPI=f |
730 |
|
MULTI_THREAD=f |
731 |
OUTDIR= |
OUTDIR= |
732 |
DELDIR= |
DELDIR= |
733 |
|
|
736 |
# Additional monitor types |
# Additional monitor types |
737 |
PTRACERS_NUM="1 2 3 4 5" |
PTRACERS_NUM="1 2 3 4 5" |
738 |
|
|
739 |
|
MATCH_CRIT=13 |
740 |
|
|
741 |
printf "parsing options... " |
printf "parsing options... " |
742 |
|
|
743 |
ac_prev= |
ac_prev= |
772 |
-tdir=* | --tdir=*) |
-tdir=* | --tdir=*) |
773 |
TESTDIRS=$ac_optarg ;; |
TESTDIRS=$ac_optarg ;; |
774 |
|
|
775 |
|
-skipdir | --skipdir | -skd | --skd) |
776 |
|
ac_prev=SKIPDIRS ;; |
777 |
|
-skipdir=* | --skipdir=*) |
778 |
|
SKIPDIRS=$ac_optarg ;; |
779 |
|
|
780 |
-bash | --bash | -b | --b) |
-bash | --bash | -b | --b) |
781 |
ac_prev=BASH ;; |
ac_prev=BASH ;; |
782 |
-bash=* | --bash=*) |
-bash=* | --bash=*) |
802 |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
803 |
PTRACERS_NUM=$ac_optarg ;; |
PTRACERS_NUM=$ac_optarg ;; |
804 |
|
|
805 |
|
-match | --match ) ac_prev=MATCH_CRIT ;; |
806 |
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
807 |
|
|
808 |
-j) ac_prev=JOBS ;; |
-j) ac_prev=JOBS ;; |
809 |
-j=*) JOBS=$ac_optarg ;; |
-j=*) JOBS=$ac_optarg ;; |
810 |
|
|
825 |
|
|
826 |
-mpi) MPI=t ;; |
-mpi) MPI=t ;; |
827 |
|
|
828 |
|
-mth) MULTI_THREAD=t ;; |
829 |
|
|
830 |
-adm | -ad) ADM=t ;; |
-adm | -ad) ADM=t ;; |
831 |
|
|
832 |
-ieee) IEEE=true ;; |
-ieee) IEEE=true ;; |
838 |
|
|
839 |
-deldir | -dd) DELDIR=t ;; |
-deldir | -dd) DELDIR=t ;; |
840 |
|
|
841 |
|
-ts) TS=t;; |
842 |
|
|
843 |
|
-papis) PAPIS=t;; |
844 |
|
|
845 |
|
-pcls) PCL=t;; |
846 |
|
|
847 |
-*) |
-*) |
848 |
echo "Error: unrecognized option: "$ac_option |
echo "Error: unrecognized option: "$ac_option |
849 |
usage |
usage |
866 |
|
|
867 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
868 |
if test "x$ADM" = xt ; then |
if test "x$ADM" = xt ; then |
869 |
TESTDIRS=`scandirs results_ad` |
LIST=`scandirs results_ad` |
870 |
else |
else |
871 |
TESTDIRS=`scandirs results` |
LIST=`scandirs results` |
872 |
fi |
fi |
873 |
|
else |
874 |
|
#- expand group of experiments: |
875 |
|
LIST=" " |
876 |
|
for xx in $TESTDIRS |
877 |
|
do |
878 |
|
case $xx in |
879 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
880 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
881 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
882 |
|
;; |
883 |
|
'tutorials') |
884 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
885 |
|
*) LIST=${LIST}" "$xx ;; |
886 |
|
esac |
887 |
|
done |
888 |
fi |
fi |
889 |
|
#echo 'LIST='${LIST}'<' |
890 |
|
#- skip dirs, remove duplicate and non-directory: |
891 |
|
TESTDIRS=" " |
892 |
|
count=0 |
893 |
|
for xx in $LIST |
894 |
|
do |
895 |
|
yy=`echo $SKIPDIRS | grep -c $xx` |
896 |
|
if test $yy = 0 ; then |
897 |
|
if test -d $xx ; then |
898 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
899 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
900 |
|
else count=1 ; |
901 |
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
902 |
|
fi |
903 |
|
else |
904 |
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
905 |
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
906 |
|
fi |
907 |
|
fi |
908 |
|
done |
909 |
|
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
910 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
911 |
|
|
912 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
913 |
OPTFILE=$MITGCM_OF |
OPTFILE=$MITGCM_OF |
921 |
OUTPUTFILE="output.txt" |
OUTPUTFILE="output.txt" |
922 |
fi |
fi |
923 |
|
|
|
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
|
|
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
|
|
fi |
|
|
|
|
924 |
if test "x$COMMAND" = x ; then |
if test "x$COMMAND" = x ; then |
925 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
926 |
fi |
fi |
927 |
|
if test "x$MPI" = xt ; then |
928 |
|
OUTPUTFILE="STDOUT.0000" |
929 |
|
fi |
930 |
|
|
931 |
#echo "OK" |
#echo "OK" |
932 |
echo "OK (COMMAND= $COMMAND )" |
echo "OK (COMMAND= $COMMAND )" |
994 |
echo |
echo |
995 |
echo >> $SUMMARY |
echo >> $SUMMARY |
996 |
if test "x$ADM" = x ; then |
if test "x$ADM" = x ; then |
997 |
line_0=" ----T----- ----S----- ----U----- ----V-----" |
if [ $MATCH_CRIT -lt 10 ] ; |
998 |
|
then line_0=" "$MATCH_CRIT ; |
999 |
|
else line_0=" "$MATCH_CRIT ; fi |
1000 |
|
line_0=" $line_0 ----T----- ----S----- ----U----- ----V-----" |
1001 |
|
# line_0=" ----T----- ----S----- ----U----- ----V-----" |
1002 |
line_1="G D M c m s m s m s m s" |
line_1="G D M c m s m s m s m s" |
1003 |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1004 |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1037 |
# Cleanup only! |
# Cleanup only! |
1038 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1039 |
if test -r $dir/build/Makefile ; then |
if test -r $dir/build/Makefile ; then |
1040 |
|
echo ' ------ clean dir:' $dir/build |
1041 |
( cd $dir/build ; make CLEAN ) |
( cd $dir/build ; make CLEAN ) |
1042 |
fi |
fi |
1043 |
if test -r $dir/input/Makefile ; then |
if test -d $dir/run/CVS ; then |
1044 |
( cd $dir/input ; make CLEAN ) |
echo ' ------ clean dir:' $dir/run |
1045 |
|
run_clean $dir/run |
1046 |
fi |
fi |
1047 |
( |
( |
1048 |
cd $dir |
cd $dir |
1069 |
|
|
1070 |
# Check for additional types of monitor output |
# Check for additional types of monitor output |
1071 |
|
|
1072 |
builddir="input" |
builddir="build" |
1073 |
rundir="input" |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1074 |
use_seperate_build=0 |
rundir="run" |
1075 |
if test -d $dir/build -a -r $dir/build ; then |
#rundir=$builddir |
1076 |
builddir="build" |
if test ! -d $dir/$rundir ; then |
1077 |
rundir="build" |
rundir=$builddir |
|
use_seperate_build=1 |
|
|
linkdata $use_seperate_build $dir/$rundir |
|
1078 |
fi |
fi |
1079 |
|
|
|
# Check whether there are "extra runs" for this testdir |
|
|
extra_runs= |
|
|
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
|
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
|
|
echo "ex_run_dirs='$ex_run_dirs'" |
|
|
for exd in $ex_run_dirs ; do |
|
|
name=`echo $exd | sed -e 's/input.//g'` |
|
|
outf="$dir/results/output.txt.$name" |
|
|
if test -f $outf -a -r $outf ; then |
|
|
extra_runs="$extra_runs $name" |
|
|
fi |
|
|
done |
|
|
fi |
|
|
|
|
1080 |
if test "x$ADM" = x ; then |
if test "x$ADM" = x ; then |
1081 |
code_dir=code |
code_dir=code |
1082 |
CODE_DIR=$dir/code |
CODE_DIR=$dir/code |
1083 |
|
input_dirs='input' |
1084 |
else |
else |
1085 |
code_dir=code_ad |
code_dir=code_ad |
1086 |
CODE_DIR=$dir/code_ad |
CODE_DIR=$dir/code_ad |
1087 |
|
input_dirs='input_ad input' |
1088 |
fi |
fi |
1089 |
BUILD_DIR=$dir/$builddir |
BUILD_DIR=$dir/$builddir |
1090 |
|
|
1092 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1093 |
continue |
continue |
1094 |
fi |
fi |
1095 |
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1096 |
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1097 |
|
continue |
1098 |
|
fi |
1099 |
|
|
1100 |
|
# Check whether there are "extra runs" for this testdir |
1101 |
|
extra_runs= |
1102 |
|
if test "x$ADM" = x ; then |
1103 |
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
1104 |
|
#echo "ex_run_dirs='$ex_run_dirs'" |
1105 |
|
for exd in $ex_run_dirs ; do |
1106 |
|
name=`echo $exd | sed -e 's/input.//g'` |
1107 |
|
outf="$dir/results/output.$name.txt" |
1108 |
|
if test -f $outf -a -r $outf ; then |
1109 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1110 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1111 |
|
extra_runs="$extra_runs $name" |
1112 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1113 |
|
fi |
1114 |
|
else |
1115 |
|
extra_runs="$extra_runs $name" |
1116 |
|
fi |
1117 |
|
fi |
1118 |
|
done |
1119 |
|
fi |
1120 |
|
|
1121 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1122 |
echo |
echo |
1123 |
echo "Experiment: $dir" |
if test "x$extra_runs" = "x" ; then |
1124 |
|
echo "Experiment: $dir" |
1125 |
|
else |
1126 |
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1127 |
|
fi |
1128 |
echo |
echo |
1129 |
unset genmake makedepend make run |
unset genmake makedepend make run |
1130 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1135 |
CDIR=`pwd`"/$rel_CDIR" |
CDIR=`pwd`"/$rel_CDIR" |
1136 |
|
|
1137 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1138 |
makeclean $dir/$builddir |
echo '====>>> this is to check that we never go through this part <<< ===' |
1139 |
|
makeclean $dir/$builddir \ |
1140 |
|
&& run_clean $dir/$rundir |
1141 |
else |
else |
1142 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1143 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1144 |
|
&& run_clean $dir/$rundir \ |
1145 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1146 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1147 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1148 |
&& linkdata $use_seperate_build $dir/$rundir \ |
&& linkdata $dir/$rundir $input_dirs \ |
1149 |
&& runmodel $dir/$rundir && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1150 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput $dir $rundir "txt"` |
1151 |
fi |
fi |
1152 |
|
|
1153 |
echo |
echo |
1169 |
mkdir $rel_CDIR |
mkdir $rel_CDIR |
1170 |
CDIR=`pwd`"/$rel_CDIR" |
CDIR=`pwd`"/$rel_CDIR" |
1171 |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1172 |
for ldir in input.$ex input ; do |
run_clean $dir/tr_run.$ex |
1173 |
( |
linkdata $dir/tr_run.$ex input.$ex input |
|
cd "$dir/$ldir" > /dev/null 2>&1 |
|
|
ls -1 2>/dev/null \ |
|
|
| sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g' |
|
|
) > tr_exrun_links |
|
|
( |
|
|
cd "$dir/tr_run.$ex" |
|
|
cat ../../tr_exrun_links | while read i ; do |
|
|
if test ! "x$i" = x ; then |
|
|
test ! -r $i && ln -s "../"$ldir"/"$i $i |
|
|
fi |
|
|
done |
|
|
) |
|
|
test -e tr_exrun_links && rm -f tr_exrun_links |
|
|
done |
|
|
ldir=build |
|
|
( |
|
|
cd $dir/tr_run.$ex |
|
|
test ! -e mitgcmuv && ln -s "../"$ldir"/"mitgcmuv . |
|
|
) |
|
1174 |
runmodel $dir/tr_run.$ex && run=Y \ |
runmodel $dir/tr_run.$ex && run=Y \ |
1175 |
&& results=`testoutput $dir tr_run.$ex "."$ex` |
&& results=`testoutput $dir tr_run.$ex ${ex}".txt"` |
1176 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1177 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1178 |
fres="$fres.$ex" |
fres="$fres.$ex" |
1183 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1184 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1185 |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1186 |
|
if test "x$POSTCLEAN" = xt ; then |
1187 |
|
run_clean $dir/tr_run.$ex |
1188 |
|
fi |
1189 |
done |
done |
1190 |
else |
else |
1191 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1201 |
>> $CDIR"/summary.txt" |
>> $CDIR"/summary.txt" |
1202 |
fi |
fi |
1203 |
|
|
1204 |
postclean $dir/$builddir |
#postclean $dir/$builddir |
1205 |
|
if test "x$POSTCLEAN" = xt ; then |
1206 |
|
makeclean $dir/$builddir \ |
1207 |
|
&& run_clean $dir/$rundir |
1208 |
|
fi |
1209 |
|
|
1210 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1211 |
|
|
1243 |
fi |
fi |
1244 |
fi |
fi |
1245 |
|
|
1246 |
# rm -f tmp_cmpnum.f a.out |
rm -f tr_cmpnum.c tr_cmpnum |
|
rm -f tmp_cmpnum.c tmp_cmpnum |
|
1247 |
|
|
1248 |
if test "x$CLEANUP" != xt ; then |
if test "x$CLEANUP" != xt ; then |
1249 |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
cat $SUMMARY | sed 's/ -- -- -- --//g' |