1 |
#!/bin/bash |
#! /usr/bin/env bash |
2 |
# |
# |
3 |
# $Header$ |
# $Header$ |
4 |
# $Name$ |
# $Name$ |
11 |
echo |
echo |
12 |
echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
14 |
echo " (-mpi) use MPI input files" |
echo " ---- type of test : ----" |
15 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
echo " (-tlm) perform a Tangent Linear run" |
16 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
echo " (-adm|-ad) perform an adjoint run" |
17 |
echo " (-a|-addr)STRING list of email recipients" |
echo " (-oad) perform an OpenAD adjoint run" |
18 |
echo " (DEF=\"edhill@mitgcm.org\")" |
echo " (-mth) run multi-threaded (using eedata.mth)" |
19 |
echo " (-t|-tdir)STRING list of test dirs to use" |
echo " (-mpi) use MPI to compile and run on 2 processors" |
20 |
echo " (DEF=\"\" which builds all)" |
echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs" |
21 |
echo " (-b|-bash)STRING location of \"bash\" executable" |
echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on" |
22 |
echo " (DEF=\"\" for \"/bin/bash\")" |
echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)" |
23 |
echo " (-command)STRING command to run" |
echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'" |
24 |
echo " (DEF=\"make output.txt\")" |
echo " ---- testing options : ----" |
25 |
echo " (-m|-make)STRING command to use for \"make\"" |
echo " (-optfile|-of) STRING list of optfiles to use" |
26 |
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echo " (-fast) use optfile default for compiler flags (no '-ieee')" |
27 |
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echo " DEF=off => use IEEE numerics option (if available)" |
28 |
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echo " (-devel) use optfile developement flags (if available)" |
29 |
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echo " (-gsl) compile with \"-gsl\" flag" |
30 |
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echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable" |
31 |
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echo " (-tdir|-t) STRING list of group and/or exp. dirs to test" |
32 |
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echo " (recognized groups: basic, tutorials)" |
33 |
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echo " (DEF=\"\" which test all)" |
34 |
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echo " (if list= 'start_from THIS_EXP' then" |
35 |
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echo " test THIS_EXP + all the following)" |
36 |
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echo " (-skipdir|-skd) STRING list of exp. dirs to skip" |
37 |
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echo " (DEF=\"\" which test all)" |
38 |
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echo " (-ts) provide timing information per timestep" |
39 |
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echo " (-papis) provide MFlop/s per timestep using PAPI" |
40 |
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echo " (-pcls) provide MFlop/s per timestep using PCL" |
41 |
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echo " ---- system options : ----" |
42 |
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echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell" |
43 |
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echo " (DEF=\"\" for \"bash\")" |
44 |
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echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument" |
45 |
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echo " (-ncad) used genmake2 option \"-nocat4ad\" (-ncad)" |
46 |
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echo " (-makedepend|-md) STRING command to use for \"makedepend\"" |
47 |
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echo " (-make|-m) STRING command to use for \"make\"" |
48 |
echo " (DEF=\"make\")" |
echo " (DEF=\"make\")" |
49 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
50 |
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echo " ---- output options : ----" |
51 |
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echo " (-match) NUMBER Matching Criteria (number of digits)" |
52 |
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echo " (DEF=\"$MATCH_CRIT\")" |
53 |
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echo " (-odir) STRING used to build output directory name" |
54 |
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echo " (DEF=\"hostname\")" |
55 |
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echo " (-addr|-a) STRING list of email recipients" |
56 |
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echo " (DEF=\"\" no email is sent)" |
57 |
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echo " (-send) STRING sending command (instead of using mpack)" |
58 |
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echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')" |
59 |
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echo " (-mpackdir|-mpd) DIR location of the mpack utility" |
60 |
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echo " (DEF=\"../tools/mpack-1.6\")" |
61 |
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echo " -- do only some parts: --" |
62 |
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echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir" |
63 |
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echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)" |
64 |
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echo " (-obj) only produces objects (=norun & no executable)" |
65 |
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echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)" |
66 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
67 |
echo " (-nogenmake|-ng) skip the genmake stage" |
echo " (-nogenmake|-ng) skip the genmake stage" |
68 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
69 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
70 |
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echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir" |
71 |
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echo " (-deloutp|-do) delete output files after successful run" |
72 |
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echo " (-deldir|-dd) on success, delete the output directory" |
73 |
echo |
echo |
74 |
echo "and where STRING follows a whitespace-delimited format" |
echo "and where STRING can be a whitespace-delimited list" |
75 |
echo "such as:" |
echo "such as:" |
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echo |
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echo " -t 'exp0 exp2 exp3' " |
echo " -t 'exp0 exp2 exp3' " |
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echo " -addr='abc@123.com testing@home.org'" |
echo " -addr='abc@123.com testing@home.org'" |
79 |
echo |
echo |
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echo "provided that the expression is properly quoted within the current" |
81 |
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echo "shell (note the use of single quotes to protect white space)." |
82 |
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echo |
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exit 1 |
exit 1 |
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} |
} |
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# build the mpack utility |
# build the mpack utility |
87 |
build_mpack() |
build_mpack() |
88 |
{ |
{ |
89 |
echo -n "building the mpack utility... " |
printf "building the mpack utility... " |
90 |
if test ! -x "$MPACKDIR/mpack" ; then |
MPACK="$MPACKDIR/mpack" |
91 |
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if test ! -x $MPACK ; then |
92 |
if test ! -d $MPACKDIR ; then |
if test ! -d $MPACKDIR ; then |
93 |
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echo |
94 |
echo "Error: can't find \"$MPACKDIR\"" |
echo "Error: can't find \"$MPACKDIR\"" |
95 |
echo " are you sure this program is being run in the correct " |
echo " are you sure this program is being run in the correct " |
96 |
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
97 |
exit 1 |
echo |
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HAVE_MPACK=f |
99 |
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fi |
100 |
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if test "x$CC" = x ; then |
101 |
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export CC=cc |
102 |
fi |
fi |
103 |
echo -n "building mpack... " |
printf "building mpack (using CC=$CC)... " |
104 |
( cd $MPACKDIR && ./configure && $MAKE ) > build_mpack.out 2>&1 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
105 |
RETVAL=$? |
RETVAL=$? |
106 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
107 |
echo |
echo |
108 |
echo "Error building the mpack tools at: $MPACK_DIR" |
echo "Error building the mpack tools at: $MPACK_DIR" |
109 |
exit 1 |
echo |
110 |
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HAVE_MPACK=f |
111 |
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else |
112 |
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rm -f tr_build_mpack.out |
113 |
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HAVE_MPACK=t |
114 |
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echo "done" |
115 |
fi |
fi |
116 |
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else |
117 |
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HAVE_MPACK=t |
118 |
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echo "already exist" |
119 |
fi |
fi |
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echo "OK" |
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} |
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compare_lines() |
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{ |
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# use codelet to compare lines |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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return `./a.out < tmp3.txt` |
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120 |
} |
} |
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122 |
testoutput_for_prop() |
testoutput_var() |
123 |
{ |
{ |
124 |
# testoutput_for_prop dir s1 label subdir |
# testoutput_var dir s1 label subdir reference_output |
125 |
# |
# |
126 |
# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
127 |
# using search strings s1 and text label |
# with same output from reference file $dir/$reference_output |
128 |
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# using search strings s1 and text label |
129 |
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130 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
131 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
132 |
fi |
fi |
133 |
if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
134 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > ${TMP}a.txt |
135 |
lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' ` |
136 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntA -lt 2 ]; then |
137 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
138 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
139 |
fi |
fi |
140 |
return 99 |
rm -f ${TMP}a.txt ; return 99 |
141 |
fi |
fi |
142 |
else |
else |
143 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
144 |
return 99 |
return 99 |
145 |
fi |
fi |
146 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
147 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
echo testoutput_var: grep "$2" $1/$5 1>&2 |
148 |
fi |
fi |
149 |
grep "$2" $1/results/output.txt | sed 's/.*=//' | cat -n > tmp2.txt |
grep "$2" $1/$5 | sed 's/.*=//' | cat -n > ${TMP}b.txt |
150 |
lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' ` |
151 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntB -lt 2 ]; then |
152 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
153 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
154 |
fi |
fi |
155 |
return 99 |
rm -f ${TMP}a.txt ${TMP}b.txt ; return 99 |
156 |
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fi |
157 |
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if [ $lncntA -ne $lncntB ]; then |
158 |
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if [ $verbose -gt 0 ]; then |
159 |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
160 |
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fi |
161 |
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rm -f ${TMP}a.txt ${TMP}b.txt ; return 99 |
162 |
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fi |
163 |
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has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l` |
164 |
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if [ $has_nan -gt 0 ] ; then |
165 |
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echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
166 |
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rm -f ${TMP}a.txt ${TMP}b.txt ; return 99 |
167 |
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fi |
168 |
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has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l` |
169 |
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if [ $has_inf -gt 0 ] ; then |
170 |
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echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
171 |
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rm -f ${TMP}a.txt ${TMP}b.txt ; return 99 |
172 |
fi |
fi |
173 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
174 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2 |
175 |
fi |
fi |
176 |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
177 |
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join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt |
178 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
179 |
echo testoutput_for_prop: compare_lines 1>&2 |
echo testoutput_var: compare_lines 1>&2 |
180 |
fi |
fi |
181 |
compare_lines |
if [ $verbose -gt 1 ]; then |
182 |
digits_of_similarity=$? |
cat ${TMP}c.txt 1>&2 |
183 |
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fi |
184 |
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echo "-1" >> ${TMP}c.txt |
185 |
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digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt` |
186 |
if [ $digits_of_similarity -eq 99 ]; then |
if [ $digits_of_similarity -eq 99 ]; then |
187 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
188 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
189 |
fi |
fi |
190 |
digits_of_similarity=99 |
digits_of_similarity=99 |
191 |
else |
else |
192 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
193 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
194 |
fi |
fi |
195 |
fi |
fi |
196 |
rm tmp1.txt tmp2.txt tmp3.txt |
rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt |
197 |
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|
198 |
return $digits_of_similarity |
return $digits_of_similarity |
199 |
} |
} |
200 |
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201 |
dashnum() |
testoutput_run() |
202 |
{ |
{ |
203 |
# dashnum n1 n2 n3 ... |
# testoutput_run directory subdir reference_output |
204 |
# |
# |
205 |
# print numbers using %3i format or "--" if number = 99 |
# test output from 1 run in "directory" |
206 |
|
# --> same processing for adjoint & forward test |
207 |
for num in $@ ; do |
# default list of output variables to be checked: |
208 |
if [ $num = 99 ]; then |
# 1rst : main variable used to decide if it pass or FAIL |
209 |
printf ' --' |
# others : number of matching digits to be printed in summary.txt |
210 |
else |
listChk=$DEF_CHECK_LIST |
211 |
printf '%3i' $num |
# load experiment-specific list from file "tr_checklist" (if it exist) |
212 |
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if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
213 |
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sVar=`echo $listChk | awk '{print $1}'` |
214 |
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# remove 1rst var and expand the list: + => min max mean s.d |
215 |
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listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
216 |
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| sed 's/+//g' | sed "s/^$sVar//"` |
217 |
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if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
218 |
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# set ref.outp file-name and, if compressed, uncompress it into subdir |
219 |
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refoutp=results/$3 |
220 |
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if test ! -r $1/results/$3 ; then |
221 |
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if test -r $1/results/${3}.gz ; then |
222 |
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tmpNam1=$3 |
223 |
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tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'` |
224 |
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if test "x$tmpNam1" = "x$tmpNam2" ; then |
225 |
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tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'` |
226 |
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fi |
227 |
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refoutp=$2/$tmpNam1 |
228 |
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if [ $debug -gt 0 ]; then |
229 |
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echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2 |
230 |
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fi |
231 |
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gzip -cd $1/results/${3}.gz > $1/$refoutp |
232 |
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else |
233 |
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echo "missing reference output file '$3' (.gz) in '$1/results/'" |
234 |
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fi |
235 |
fi |
fi |
236 |
done |
# check for ptracer output in reference_output file : |
237 |
} |
if test $KIND = 0 ; then |
238 |
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ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
239 |
testoutput() |
ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
240 |
{ |
for ii in $PTRACERS_NUM ; do |
241 |
# testoutput diretory subdir |
ptrfound=0 |
242 |
# |
for jj in $ptr_mon ; do |
243 |
# test output in "directory" |
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
244 |
|
tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'` |
245 |
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if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
246 |
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done |
247 |
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if test $ptrfound = '1' ; then |
248 |
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eval "HAVE_PTR0"$ii"=t" |
249 |
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else |
250 |
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eval "HAVE_PTR0"$ii"=f" |
251 |
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# remove this ptr from the list of output variable to check |
252 |
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# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
253 |
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listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
254 |
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fi |
255 |
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# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
256 |
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done |
257 |
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fi |
258 |
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tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
259 |
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if test $tst != 1 ; then |
260 |
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if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
261 |
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else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
262 |
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echo "==> WARNING: in checked list:" $listVar 1>&2 |
263 |
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#- put it back once: |
264 |
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listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
265 |
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fi |
266 |
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if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
267 |
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echo "listVar='$listVar'" >> $locDIR"/summary.txt" |
268 |
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#--- |
269 |
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allargs="" |
270 |
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for xx in $listVar |
271 |
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do |
272 |
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case $xx in |
273 |
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'PS') if [ $debug -gt 0 ] |
274 |
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then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
275 |
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testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$? |
276 |
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if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
277 |
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'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;; |
278 |
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'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;; |
279 |
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'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;; |
280 |
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'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;; |
281 |
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'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;; |
282 |
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'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;; |
283 |
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'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;; |
284 |
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'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;; |
285 |
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'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;; |
286 |
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'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;; |
287 |
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'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;; |
288 |
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'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;; |
289 |
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'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;; |
290 |
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'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;; |
291 |
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'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;; |
292 |
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'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;; |
293 |
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'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;; |
294 |
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'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;; |
295 |
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'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;; |
296 |
|
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;; |
297 |
|
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;; |
298 |
|
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;; |
299 |
|
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
300 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;; |
301 |
|
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
302 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;; |
303 |
|
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
304 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;; |
305 |
|
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
306 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;; |
307 |
|
'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;; |
308 |
|
'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;; |
309 |
|
'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;; |
310 |
|
'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;; |
311 |
|
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;; |
312 |
|
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;; |
313 |
|
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;; |
314 |
|
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;; |
315 |
|
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;; |
316 |
|
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;; |
317 |
|
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;; |
318 |
|
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;; |
319 |
|
'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;; |
320 |
|
'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;; |
321 |
|
'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;; |
322 |
|
'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;; |
323 |
|
'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;; |
324 |
|
'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;; |
325 |
|
'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;; |
326 |
|
'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;; |
327 |
|
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;; |
328 |
|
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;; |
329 |
|
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;; |
330 |
|
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;; |
331 |
|
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;; |
332 |
|
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;; |
333 |
|
'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;; |
334 |
|
'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;; |
335 |
|
'sbo_M') testoutput_var $1 "sbo_mass" "SBO mass" $2 $refoutp ; yy=$? ;; |
336 |
|
'sboFW') testoutput_var $1 "sbo_mass_fw" "SBO m-FW" $2 $refoutp ; yy=$? ;; |
337 |
|
'sboAc') testoutput_var $1 "sbo_zoamc" "SBO AM-C" $2 $refoutp ; yy=$? ;; |
338 |
|
'sboAp') testoutput_var $1 "sbo_zoamp" "SBO AM-P" $2 $refoutp ; yy=$? ;; |
339 |
|
'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;; |
340 |
|
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
341 |
|
esac |
342 |
|
if test $xx = $sVar |
343 |
|
then allargs="$allargs > $yy <" |
344 |
|
else allargs="$allargs $yy" |
345 |
|
fi |
346 |
|
done |
347 |
|
|
348 |
if [ $debug -gt 0 ]; then |
nbVar=`echo $listVar | awk '{print NF}'` |
349 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
350 |
fi |
#-- fill line (up to standard length) with dot: |
351 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$? |
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
352 |
if [ $debug -gt 0 ]; then |
echo $allargs $adNul |
353 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
else |
354 |
fi |
echo $allargs |
355 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
fi |
356 |
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
# <-- same processing for adjoint & forward test |
|
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$? |
|
|
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$? |
|
|
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
|
|
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
|
|
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$? |
|
|
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$? |
|
|
|
|
|
dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
|
|
$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
|
357 |
} |
} |
358 |
|
|
359 |
genmakemodel() |
genmakemodel() |
362 |
if test "x$NOGENMAKE" = xt ; then |
if test "x$NOGENMAKE" = xt ; then |
363 |
echo "genmake skipped!" |
echo "genmake skipped!" |
364 |
else |
else |
365 |
GENMAKE2="$BASH ../../../tools/genmake2" |
if test "x$BASH" = x ; then |
366 |
|
GENMAKE2="../../../tools/genmake2" |
367 |
|
else |
368 |
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
369 |
|
fi |
370 |
( |
( |
371 |
cd $1; |
cd $1; |
372 |
command="$GENMAKE2 -ds -m $MAKE --mods=../code" |
command="$GENMAKE2 -ds -m $MAKE" |
373 |
|
if test "x$MKDEPEND" != x ; then |
374 |
|
command="$command -makedepend=$MKDEPEND" |
375 |
|
fi |
376 |
|
if test $KIND = 4 ; then |
377 |
|
command="$command -oad -mods=../$code_dir" |
378 |
|
else |
379 |
|
command="$command -mods=../$code_dir" |
380 |
|
fi |
381 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
382 |
command="$command --optfile=$OPTFILE" |
command="$command -optfile=$OPTFILE" |
|
# echo " command=\"$command\"" |
|
383 |
fi |
fi |
384 |
if test "x$IEEE" != x ; then |
if test $OptLev = 1 ; then |
385 |
command="$command -ieee" |
command="$command -ieee" |
386 |
fi |
fi |
387 |
# echo "command: \"$command\"" |
if test $OptLev = 0 ; then |
388 |
printf 'genmake ... ' 1>&2 |
command="$command -devel" |
389 |
$command > make.log 2>&1 |
fi |
390 |
|
if test "x$GSL" = xt ; then |
391 |
|
command="$command -gsl" |
392 |
|
fi |
393 |
|
if test "x$MPI" != x0 ; then |
394 |
|
command="$command -mpi" |
395 |
|
fi |
396 |
|
if test "x$MULTI_THREAD" = xt ; then |
397 |
|
#- run multi-threaded using OpenMP: |
398 |
|
command="$command -omp" |
399 |
|
fi |
400 |
|
if test "x$USE_R4" = xt ; then |
401 |
|
command="$command -use_r4" |
402 |
|
fi |
403 |
|
if test "x$EXTRFLG" != x ; then |
404 |
|
command="$command -extra_flag $EXTRFLG" |
405 |
|
fi |
406 |
|
if test "x$NOCATAD" = xt ; then |
407 |
|
command="$command -nocat4ad" |
408 |
|
fi |
409 |
|
if test "x$TS" = xt ; then |
410 |
|
command="$command -ts" |
411 |
|
fi |
412 |
|
if test "x$PAPIS" = xt ; then |
413 |
|
command="$command -papis" |
414 |
|
else |
415 |
|
if test "x$PCLS" = xt ; then |
416 |
|
command="$command -pcls" |
417 |
|
fi |
418 |
|
fi |
419 |
|
printf 'genmake ... ' |
420 |
|
eval $command > genmake.tr_log 2>&1 |
421 |
RETVAL=$? |
RETVAL=$? |
422 |
for i in genmake_state genmake_optfile genmake_local Makefile ; do |
# Reduce the size of the testing emails! |
423 |
if test -r $i ; then |
head -100 Makefile > $CDIR/Makefile_head |
|
cp $i $CDIR |
|
|
fi |
|
|
done |
|
424 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
425 |
tail make.log |
tail genmake.tr_log |
426 |
echo "genmakemodel: genmake failed" 1>&2 |
echo "genmakemodel: genmake failed" |
427 |
cp make.log $CDIR |
cp genmake.log genmake_* genmake.tr_log $CDIR |
428 |
return 1 |
return 1 |
429 |
else |
else |
430 |
echo "succesful" 1>&2 |
echo "successful" |
431 |
fi |
fi |
432 |
) |
) |
433 |
fi |
fi |
436 |
makeclean() |
makeclean() |
437 |
{ |
{ |
438 |
# makeclean directory |
# makeclean directory |
439 |
|
if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi |
440 |
if test "x$NOCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
441 |
echo "make CLEAN skipped!" |
echo "make Clean skipped!" |
442 |
else |
else |
443 |
( |
( |
444 |
cd $1; |
cd $1; |
445 |
if test -e output.txt ; then |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
|
rm -f output.txt |
|
|
fi |
|
|
printf 'make CLEAN ... ' 2>&1 |
|
446 |
if test -r Makefile ; then |
if test -r Makefile ; then |
447 |
$MAKE CLEAN >> make.log 2>&1 |
printf 'clean build-dir: make Clean ... ' |
448 |
|
$MAKE Clean >> make.tr_log 2>&1 |
449 |
RETVAL=$? |
RETVAL=$? |
450 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
451 |
tail make.log |
tail make.tr_log |
452 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
echo "makeclean: \"make Clean\" failed" |
453 |
cp make.log $CDIR"/make.log" |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
454 |
return 1 |
return 1 |
455 |
fi |
fi |
456 |
|
echo successful |
457 |
|
else |
458 |
|
echo '' |
459 |
fi |
fi |
|
echo succesful 1>&2 |
|
460 |
exit 0 |
exit 0 |
461 |
) |
) |
462 |
fi |
fi |
463 |
} |
} |
464 |
|
|
465 |
|
run_clean() |
466 |
|
{ |
467 |
|
# run_clean directory |
468 |
|
if test "x$NOCLEAN" = xt ; then |
469 |
|
echo "run_clean skipped!" |
470 |
|
else |
471 |
|
( |
472 |
|
cd $1; |
473 |
|
printf 'clean run-dir ... ' |
474 |
|
# part of what is done after "make clean" when doing "make CLEAN" |
475 |
|
find . -name "*.meta" -exec rm {} \; |
476 |
|
find . -name "*.data" -exec rm {} \; |
477 |
|
find . -name "fort.*" -exec rm {} \; |
478 |
|
find . -type l -exec rm {} \; |
479 |
|
#- should remove executable only if sym-link (already done above) |
480 |
|
rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log |
481 |
|
rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_* |
482 |
|
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
483 |
|
rm -f oad_cp.[0-9][0-9][0-9].????? |
484 |
|
rm -rf mnc_test_* |
485 |
|
echo successful |
486 |
|
exit 0 |
487 |
|
) |
488 |
|
fi |
489 |
|
} |
490 |
|
|
491 |
makedependmodel() |
makedependmodel() |
492 |
{ |
{ |
493 |
# makedependmodel directory |
# makedependmodel directory |
496 |
else |
else |
497 |
( |
( |
498 |
cd $1; |
cd $1; |
499 |
printf 'make depend ... ' 1>&2 |
printf 'make depend ... ' |
500 |
$MAKE depend >> make.log 2>&1 |
$MAKE depend >> make.tr_log 2>&1 |
501 |
RETVAL=$? |
RETVAL=$? |
502 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
503 |
tail make.log |
tail make.tr_log |
504 |
echo "makedependmodel: make depend failed" 1>&2 |
echo "makedependmodel: make depend failed" |
505 |
cp make.log $CDIR"/make.log" |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
506 |
return 1 |
return 1 |
507 |
else |
else |
508 |
echo succesful 1>&2 |
echo successful |
509 |
fi |
fi |
510 |
) |
) |
511 |
fi |
fi |
515 |
{ |
{ |
516 |
# makemodel directory |
# makemodel directory |
517 |
( |
( |
518 |
|
mk_fail=0 |
519 |
|
if test "x$NOMAKE" = xt ; then |
520 |
|
cd $1; |
521 |
|
if test -x $EXECUTABLE ; then |
522 |
|
echo "make skipped!" |
523 |
|
else |
524 |
|
echo "no executable!" |
525 |
|
mk_fail=3 |
526 |
|
fi |
527 |
|
else |
528 |
cd $1; |
cd $1; |
529 |
if test -r Makefile ; then |
if test -r Makefile ; then |
530 |
printf 'make ... ' 1>&2 |
printf 'make ... ' |
531 |
$MAKE >> make.log 2>&1 |
$MAKE_CMD $TARG >> make.tr_log 2>&1 |
532 |
RETVAL=$? |
RETVAL=$? |
533 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
534 |
tail make.log |
tail make.tr_log |
535 |
echo failed 1>&2 |
echo failed |
536 |
cp make.log $CDIR"/make.log" |
cp genmake.log genmake.tr_log $CDIR |
537 |
return 1 |
tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail" |
538 |
|
rm -f $EXECUTABLE |
539 |
|
mk_fail=1 |
540 |
else |
else |
541 |
echo succesful 1>&2 |
echo successful |
542 |
fi |
fi |
543 |
|
else |
544 |
|
echo "no Makefile !" |
545 |
|
mk_fail=2 |
546 |
fi |
fi |
547 |
|
fi |
548 |
|
if test $KIND = 1 -a -f taf_ftl.log ; then |
549 |
|
head -1 taf_ftl.log >> $CDIR"/summary.txt" |
550 |
|
fi |
551 |
|
if test $KIND = 2 -a -f taf_ad.log ; then |
552 |
|
head -1 taf_ad.log >> $CDIR"/summary.txt" |
553 |
|
nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log` |
554 |
|
nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log` |
555 |
|
if test -f taf_output ; then |
556 |
|
n2er=`grep -c 'TAF *.* ERROR ' taf_output` |
557 |
|
n3er=`grep -c '\*ERROR\* ' taf_output` |
558 |
|
nerr=`expr $nerr + $n2er + $n3er` |
559 |
|
fi |
560 |
|
echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \ |
561 |
|
>> $CDIR"/summary.txt" |
562 |
|
fi |
563 |
|
if test $mk_fail != 0 ; then return $mk_fail ; fi |
564 |
) |
) |
565 |
} |
} |
566 |
|
|
567 |
|
mk_mpi_size() |
568 |
|
{ |
569 |
|
# mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y |
570 |
|
# |
571 |
|
# make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file) |
572 |
|
# for an MPI build with no more than proc_Nb processors ; |
573 |
|
# ensure that enough tiles per proc (nSx,nSy) remain for the given |
574 |
|
# number of threads (nTx,nTy) ; |
575 |
|
# return the effective number of processors. |
576 |
|
|
577 |
|
inp=$1 |
578 |
|
out=$2 |
579 |
|
np=$3 |
580 |
|
tx=$4 |
581 |
|
ty=$5 |
582 |
|
tmp=TTT.$$ |
583 |
|
|
584 |
|
# dirX : select with direction to favor in MPI process repartition |
585 |
|
# dirX=1 : prefer to put more proc in X direction |
586 |
|
# dirX=0 : prefer to put more proc in Y direction |
587 |
|
dirX=0 |
588 |
|
|
589 |
|
px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'` |
590 |
|
py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'` |
591 |
|
sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'` |
592 |
|
sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'` |
593 |
|
|
594 |
|
#- for each direction, assume # of threads is a multiple of total number of tiles |
595 |
|
nx=$px |
596 |
|
if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then |
597 |
|
nx=`expr $sx \* $px / $tx` |
598 |
|
if [ $verbose -gt 1 ]; then |
599 |
|
echo " change px from $px to $nx to accommodate $tx threads" |
600 |
|
fi |
601 |
|
fi |
602 |
|
ny=$py |
603 |
|
if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then |
604 |
|
ny=`expr $sy \* $py / $ty` |
605 |
|
if [ $verbose -gt 1 ]; then |
606 |
|
echo " change py from $py to $ny to accommodate $ty threads" |
607 |
|
fi |
608 |
|
fi |
609 |
|
#- find the largest divisor of input_file proc Nb, but not larger than $np |
610 |
|
pp=0 |
611 |
|
i=1 |
612 |
|
while [ $i -le $nx ] ; do |
613 |
|
if [ `expr $nx % $i` -eq 0 ] ; then |
614 |
|
j=1 |
615 |
|
while [ $j -le $ny ] ; do |
616 |
|
if [ `expr $ny % $j` -eq 0 ] ; then |
617 |
|
ij=`expr $i \* $j` |
618 |
|
if [ $ij -gt $pp ] ; then |
619 |
|
flag=1 |
620 |
|
elif [ $ij -eq $pp ] ; then |
621 |
|
flag=$dirX |
622 |
|
else |
623 |
|
flag=0 |
624 |
|
fi |
625 |
|
if test $flag = 1 ; then |
626 |
|
if [ $ij -le $np ] ; then |
627 |
|
ix=$i ; jy=$j ; pp=$ij |
628 |
|
#echo " ix,jy= $ix,$jy" |
629 |
|
fi |
630 |
|
fi |
631 |
|
fi |
632 |
|
j=`expr $j + 1` |
633 |
|
done |
634 |
|
fi |
635 |
|
i=`expr $i + 1` |
636 |
|
done |
637 |
|
|
638 |
|
#- create new SIZE.h type file: |
639 |
|
sx=`expr $sx \* $px / $ix` |
640 |
|
sy=`expr $sy \* $py / $jy` |
641 |
|
if [ $verbose -gt 1 ]; then |
642 |
|
echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy" |
643 |
|
fi |
644 |
|
sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp |
645 |
|
sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out |
646 |
|
sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp |
647 |
|
sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out |
648 |
|
rm -f $tmp |
649 |
|
return $pp |
650 |
|
} |
651 |
|
|
652 |
|
symlink_mpifiles() |
653 |
|
{ |
654 |
|
# Put special links so that MPI specific files are used |
655 |
|
# This MUST be invoked between makeclean and makelinks because |
656 |
|
# the Makefile will link to non-mpi files by default |
657 |
|
|
658 |
|
dir=$1 |
659 |
|
code_dir=$2 |
660 |
|
build_dir=$dir/$3 |
661 |
|
|
662 |
|
# These are files that should replace their counter-part when using -mpi |
663 |
|
MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)` |
664 |
|
|
665 |
|
for ii in $MPI_FILES ; do |
666 |
|
i=`echo $ii | sed 's:^\./::'` |
667 |
|
name=`echo $i | sed 's:_mpi::'` |
668 |
|
file="../$code_dir/$i" |
669 |
|
if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi |
670 |
|
|
671 |
|
# Is this an MPI run? |
672 |
|
if test "x$MPI" = x0 ; then |
673 |
|
# NO: We undo any _mpi symbolically linked files |
674 |
|
if test -L $build_dir/$name ; then |
675 |
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
676 |
|
RETVAL=$? |
677 |
|
if test "x$RETVAL" = x0 ; then |
678 |
|
if [ $verbose -gt 1 ]; then |
679 |
|
echo " Un-linking $name from ../$code_dir" ; fi |
680 |
|
rm -f $build_dir/$name |
681 |
|
fi |
682 |
|
fi |
683 |
|
else |
684 |
|
# YES: We symbolically link these files to the build |
685 |
|
# dir so long as there is no real file in place |
686 |
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
687 |
|
RETVAL=$? |
688 |
|
if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi |
689 |
|
if test "x$RETVAL" != x0 ; then |
690 |
|
if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi |
691 |
|
if test ! -r $build_dir/$name ; then |
692 |
|
if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi |
693 |
|
(cd $build_dir; ln -sf $file $name) |
694 |
|
fi |
695 |
|
fi |
696 |
|
fi |
697 |
|
done |
698 |
|
} |
699 |
|
|
700 |
linkdata() |
linkdata() |
701 |
{ |
{ |
702 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
703 |
# |
# |
704 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
705 |
if test "x$1" = x1 ; then |
if test -d $1 ; then |
706 |
( |
( |
707 |
cd $2 |
cd $1 ; shift |
708 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
echo 'linkdata from dirs:' $* |
709 |
for i in $files ; do |
inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')` |
710 |
if test ! -d "../input/"$i ; then |
for xx in $inpMPI ; do |
711 |
ln -sf "../input/"$i $i |
if test -r "../"$1"/"$xx ; then |
712 |
|
# found 1 _mpi sfx file in 1rst input dir and it is readable |
713 |
|
yy=`echo $xx | sed 's:\.mpi$::'` |
714 |
|
if test "x$MPI" = "x0" ; then |
715 |
|
# not mpi test: remove symbolic link |
716 |
|
if test -h $yy ; then rm -f $yy ; fi |
717 |
|
else |
718 |
|
# mpi test: remove symbolic link & link .mpi sfx file |
719 |
|
if test -h $yy ; then rm -f $yy ; fi |
720 |
|
if test ! -r $yy ; then |
721 |
|
ln -sf "../"$1"/"$xx $yy ; |
722 |
|
printf " $xx" 1>&2 |
723 |
|
fi |
724 |
fi |
fi |
725 |
|
fi |
726 |
|
done |
727 |
|
if test -r "../"$1"/eedata.mth" ; then |
728 |
|
# found eedata.mth in 1rst input dir and it is readable |
729 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
730 |
|
# multi-threaded test: remove symbolic link & link eedata.mth |
731 |
|
if test -h eedata ; then rm -f eedata ; fi |
732 |
|
if test ! -r eedata ; then |
733 |
|
ln -sf "../"$1"/eedata.mth" eedata ; |
734 |
|
printf ' eedata.mth' 1>&2 |
735 |
|
fi |
736 |
|
else |
737 |
|
# not multi-threaded test: remove eedata symbolic link |
738 |
|
if test -h eedata ; then rm -f eedata ; fi |
739 |
|
fi |
740 |
|
fi |
741 |
|
prevDir='NONE' |
742 |
|
for ldir in $* ; do |
743 |
|
if test -d "../"$ldir -a $ldir != $prevDir ; then |
744 |
|
printf " ldir=${ldir}:" 1>&2 |
745 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
746 |
|
for i in $files ; do |
747 |
|
if test ! -d "../"$ldir/$i ; then |
748 |
|
if test ! -r $i ; then |
749 |
|
printf ' '$i 1>&2 |
750 |
|
ln -sf "../"$ldir"/"$i $i |
751 |
|
fi |
752 |
|
fi |
753 |
|
done |
754 |
|
printf ' ;' 1>&2 |
755 |
|
if test -x "../"$ldir"/"prepare_run ; then |
756 |
|
"../"$ldir"/"prepare_run 1>&2 |
757 |
|
else |
758 |
|
echo '' 1>&2 |
759 |
|
fi |
760 |
|
fi |
761 |
|
prevDir=$ldir |
762 |
done |
done |
763 |
) |
) |
764 |
fi |
fi |
768 |
{ |
{ |
769 |
# runmodel directory |
# runmodel directory |
770 |
# |
# |
771 |
# runs "$COMMAND" in "directory" |
# runs $COMMAND in "directory" |
772 |
# (where "$COMMAND" is relative to "directory") |
# (where "$COMMAND" is relative to "directory") |
773 |
( |
( |
774 |
cd $1 |
cd $1 |
775 |
printf 'runmodel: ' 1>&2 |
printf 'runmodel in %s ... ' $1 |
776 |
# make output.txt |
if test "x$MPI" != x0 ; then |
777 |
$COMMAND |
#- adjust the MPI run command with the right number of Procs |
778 |
RETVAL=$? |
#echo '' ; echo " COMMAND='$COMMAND'" |
779 |
if test "x$RETVAL" = x0 ; then |
COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"` |
780 |
cp output.txt $CDIR"/output.txt" |
if test "x$MPI_MFILE" != x ; then |
781 |
|
COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"` |
782 |
|
fi |
783 |
|
#echo " COMMAND='$COMMAND'" |
784 |
|
fi |
785 |
|
if test -L $EXECUTABLE ; then |
786 |
|
if test -x "../"$builddir"/"$EXECUTABLE ; then |
787 |
|
cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
788 |
|
outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi |
789 |
|
else rm -f $EXECUTABLE |
790 |
|
fi |
791 |
|
fi |
792 |
|
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
793 |
|
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
794 |
|
ln -sf "../"$builddir"/"$EXECUTABLE . |
795 |
|
fi |
796 |
|
if test ! -x $EXECUTABLE ; then |
797 |
|
rm -f $RUNLOG ; touch $RUNLOG |
798 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
799 |
|
echo " no executable:" $EXECUTABLE >> $RUNLOG |
800 |
|
RETVAL=8 |
801 |
|
ENDVAL=-1 |
802 |
|
else |
803 |
|
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
804 |
|
# output do not exist or is older than executable: |
805 |
|
rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG |
806 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
807 |
|
#- Divided Adjoint Run: |
808 |
|
# get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA" |
809 |
|
if test $KIND = 2 -a -f run_ADM_DIVA ; then |
810 |
|
adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'` |
811 |
|
echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG |
812 |
|
eval "let $adm_diva_nb" |
813 |
|
if [ $add_DIVA_runs -ge 1 ] ; then |
814 |
|
rm -f costf* divided.ctrl snapshot* |
815 |
|
echo -n "(add_DIVA_runs=$add_DIVA_runs) ... " |
816 |
|
for ii in `seq 1 $add_DIVA_runs` ; do |
817 |
|
( eval $COMMAND ) >> $RUNLOG 2>&1 |
818 |
|
echo " additional DIVA run # $ii : done" >> $RUNLOG |
819 |
|
mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii} |
820 |
|
done |
821 |
|
fi |
822 |
|
fi |
823 |
|
#- special DIVA processing ends here |
824 |
|
( eval $COMMAND ) >> $RUNLOG 2>&1 |
825 |
|
RETVAL=$? |
826 |
|
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
827 |
|
if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then |
828 |
|
find . -name "*.meta" -exec rm {} \; |
829 |
|
find . -name "*.data" -exec rm {} \; |
830 |
|
rm -rf mnc_test_* |
831 |
|
fi |
832 |
|
else |
833 |
|
RETVAL=0 |
834 |
|
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
835 |
|
touch $RUNLOG |
836 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
837 |
|
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
838 |
|
fi |
839 |
|
fi |
840 |
|
rm -f run.log_tmp |
841 |
|
#- in all cases where OutputFile exists, report SIZE and time |
842 |
|
if test -f $OUTPUTFILE ; then |
843 |
|
grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \ |
844 |
|
| sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt" |
845 |
|
grep -A3 'Seconds in section "ALL' $OUTPUTFILE \ |
846 |
|
| sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt" |
847 |
|
fi |
848 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
849 |
|
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
850 |
|
echo successful |
851 |
|
printf '=> output from running in %s :\n' $1 1>&2 |
852 |
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
853 |
|
return 0 |
854 |
|
elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then |
855 |
|
#-- for some weird cases (run is finihed but with error code) |
856 |
|
echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')' |
857 |
|
printf '=> output from running in %s :\n' $1 1>&2 |
858 |
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
859 |
return 0 |
return 0 |
860 |
else |
else |
861 |
|
echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')' |
862 |
|
printf '=> output from running in %s :\n' $1 1>&2 |
863 |
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
864 |
|
cp $RUNLOG $CDIR"/"$RUNLOG |
865 |
return 1 |
return 1 |
866 |
fi |
fi |
867 |
) |
) |
871 |
{ |
{ |
872 |
# create codelet for comparing model output |
# create codelet for comparing model output |
873 |
|
|
874 |
echo -n "creating the comparison code... " |
printf "creating the comparison code (using CC=$CC)... " |
875 |
cat > tmp_cmpnum.f <<EOFA |
cat > tr_cmpnum.c <<EOF |
876 |
program cmpnum |
#include <stdio.h> |
877 |
implicit none |
#include <math.h> |
878 |
real*8 a,b,diff |
int main( int argc, char** argv ) { |
879 |
integer linnum,best |
int linnum,cmplin,best,lncnt; |
880 |
best=-16 |
double a,b,abave,relerr; |
881 |
99 read(*,*,end=70,err=60) linnum,a,b |
best = -22; |
882 |
diff=0.5*(abs(a)+abs(b)) |
lncnt = 0; |
883 |
c print *,a,b,diff,abs(a-b)/diff |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
884 |
if (diff.gt.1.e-12) then |
scanf("%d", &linnum); |
885 |
diff=abs(a-b)/diff |
if (linnum == -1) break; |
886 |
if (diff.gt.0.) then |
scanf("%lf", &a); scanf("%lf", &b); |
887 |
c print *,int(log10(diff)),diff |
abave = 0.5*(fabs(a)+fabs(b)); |
888 |
linnum=int(log10(diff)) |
if ( abave == abave ) { |
889 |
best=max(best,linnum) |
if (abave > 0.0) { |
890 |
endif |
relerr=fabs(a-b)/abave; |
891 |
else |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
892 |
if (best.eq.-16.and.diff.ne.0.) best=-22 |
else { cmplin = -16 ; } |
893 |
endif |
best = (best > cmplin) ? best : cmplin; } |
894 |
goto 99 |
else { cmplin = -22 ; } |
895 |
60 stop 'cmpnum: An error occured reading a,b' |
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
896 |
70 print *,-best |
} |
897 |
end |
else { |
898 |
EOFA |
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
899 |
|
break; } |
900 |
|
} |
901 |
|
if (lncnt == 999) best=-29; |
902 |
|
if (linnum != -1) best=-99; |
903 |
|
printf("%d\n", -best); |
904 |
|
return 0; |
905 |
|
} |
906 |
|
EOF |
907 |
|
$CC -o tr_cmpnum tr_cmpnum.c -lm |
908 |
|
|
909 |
f77 tmp_cmpnum.f |
if [ -x ./tr_cmpnum ]; then |
|
if [ -x ./a.out ]; then |
|
910 |
echo "OK" |
echo "OK" |
911 |
return 0 |
return 0 |
912 |
else |
else |
913 |
echo |
echo |
914 |
echo "createcodelet: failed to compile codelet" |
echo "ERROR: failed to compile comparison code -- please specify" |
915 |
|
echo " a C compiler using the CC environment variable." |
916 |
exit 1 |
exit 1 |
917 |
fi |
fi |
918 |
} |
} |
924 |
nm=$1 |
nm=$1 |
925 |
printf '%s %s %s %s' $2 $3 $4 $5 |
printf '%s %s %s %s' $2 $3 $4 $5 |
926 |
shift; shift; shift; shift; shift; |
shift; shift; shift; shift; shift; |
927 |
printf '%3s' $@ |
listPrt=$@ |
928 |
|
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
929 |
if [ $1 = '--' ]; then |
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
930 |
|
printf '%3s' $listPrt |
931 |
|
# line below does not work on hp-ux_ia64 : do those substitutions later on |
932 |
|
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
933 |
|
|
934 |
|
if [ $xx = '..' ]; then |
935 |
|
printf ' N/O ' |
936 |
|
elif [ $xx = '--' ]; then |
937 |
|
printf ' N/O ' |
938 |
|
elif [ $xx = 99 ]; then |
939 |
printf ' N/O ' |
printf ' N/O ' |
940 |
else |
else |
941 |
if [ $1 -gt 12 ]; then |
if [ $xx -ge $MATCH_CRIT ]; then |
942 |
printf ' pass' |
printf ' pass' |
943 |
else |
else |
944 |
printf ' FAIL' |
printf ' FAIL' |
945 |
fi |
fi |
946 |
fi |
fi |
947 |
printf ' %s' $nm |
printf ' %s' $nm |
948 |
|
if test $KIND = 2 ; then |
949 |
|
#-- apppend taf repport summary: |
950 |
|
tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt` |
951 |
|
if test $tafrep = 1 ; then |
952 |
|
grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}' |
953 |
|
fi |
954 |
|
fi |
955 |
printf '\n' |
printf '\n' |
|
|
|
|
} |
|
|
|
|
|
show_help() |
|
|
{ |
|
|
cat - << EOF |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
|
|
|
|
|
-help|-h Show this help message |
|
|
-quiet Reduce the amount of output |
|
|
-verbose Produce copious amounts of output |
|
|
-debug Produce even more output which will mean nothing to most |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
|
|
-clean Do "make CLEAN" after compiling and testing. |
|
|
-cleanup Aggresively removes all model output, executables and object files |
|
|
and then exits. Use with care. |
|
956 |
|
|
|
Normal usage: |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
|
|
EOF |
|
957 |
} |
} |
958 |
|
|
959 |
scandirs() |
scandirs() |
960 |
{ |
{ |
961 |
if [ $# -eq 0 ]; then |
if [ $# -eq 1 ]; then |
962 |
for arg in * ; do |
for arg in * ; do |
963 |
test -d $arg/input && echo $arg |
#test -f $arg/$1 && echo $arg |
964 |
done |
test -f $arg/$1 -o -f $arg/$1.gz && echo $arg |
965 |
|
done |
966 |
else |
else |
967 |
echo $* |
echo $* |
968 |
fi |
fi |
969 |
} |
} |
970 |
|
|
971 |
|
|
972 |
############################################################################### |
check_eedata() |
973 |
############################################################################### |
{ |
974 |
|
# check_eedata eedata size.h |
975 |
|
if [ $# -eq 2 ] ; then |
976 |
|
if test -f $1 -a -f $2 ; then |
977 |
|
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
978 |
|
sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'` |
979 |
|
if test "x$nx" = x ; then |
980 |
|
rx=10 |
981 |
|
else |
982 |
|
rx=`expr $sx % $nx` |
983 |
|
fi |
984 |
|
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
985 |
|
sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'` |
986 |
|
if test "x$ny" = x ; then |
987 |
|
ry=20 |
988 |
|
else |
989 |
|
ry=`expr $sy % $ny` |
990 |
|
fi |
991 |
|
echo `expr $rx + $ry` |
992 |
|
else |
993 |
|
echo '-1' |
994 |
|
fi |
995 |
|
elif [ $# -eq 1 ] ; then |
996 |
|
if test -f $1 ; then |
997 |
|
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
998 |
|
if test "x$nx" = x ; then nx=1 ; fi |
999 |
|
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
1000 |
|
if test "x$ny" = x ; then ny=1 ; fi |
1001 |
|
#echo $nx $ny |
1002 |
|
echo $nx |
1003 |
|
else |
1004 |
|
echo '-1' |
1005 |
|
fi |
1006 |
|
else |
1007 |
|
echo '-2' |
1008 |
|
fi |
1009 |
|
|
1010 |
|
} |
1011 |
|
|
1012 |
############################################################################### |
############################################################################### |
1013 |
|
|
1014 |
|
|
1015 |
# Default properties |
# Default properties |
1016 |
debug=0 |
debug=0 |
1017 |
verbose=1 |
verbose=1 |
1018 |
clean=0 |
NBLINES_MKLOG=16000 |
|
expts='' |
|
|
# ieee=1 |
|
|
|
|
|
IEEE= |
|
|
if test "x$MITGCM_IEEE" != x ; then |
|
|
IEEE=$MITGCM_IEEE |
|
|
fi |
|
1019 |
|
|
1020 |
|
OptLev=1 |
1021 |
|
GSL=f |
1022 |
|
|
1023 |
CLEANUP=f |
CLEANUP=f |
1024 |
|
NORUN=f |
1025 |
QUICK=f |
QUICK=f |
1026 |
|
NOMAKE=f |
1027 |
NOGENMAKE=f |
NOGENMAKE=f |
1028 |
NOCLEAN=f |
NOCLEAN=f |
1029 |
NODEPEND=f |
NODEPEND=f |
1030 |
|
POSTCLEAN=0 |
1031 |
|
|
1032 |
BASH= |
BASH= |
1033 |
OPTFILE=NONE |
OPTFILE=NONE |
1034 |
ADDRESSES= |
ADDRESSES= |
1035 |
TESTDIRS= |
TESTDIRS= |
1036 |
|
SKIPDIRS= |
1037 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
1038 |
MPACK="$MPACKDIR/mpack" |
HAVE_MPACK= |
1039 |
COMMAND="make output.txt" |
MPACK= |
1040 |
MAKE=make |
SENDCMD= |
1041 |
MPI=f |
SAVDIR='.' |
1042 |
|
COMMAND= |
1043 |
|
MKDEPEND= |
1044 |
|
if test "x$MAKE" = x ; then |
1045 |
|
MAKE=make |
1046 |
|
fi |
1047 |
|
MAKE_CMD= |
1048 |
|
if test "x$CC" = x ; then |
1049 |
|
CC=cc |
1050 |
|
fi |
1051 |
|
JOBS= |
1052 |
|
TARG= |
1053 |
|
MPI=0 |
1054 |
|
MPI_MFILE= |
1055 |
|
MULTI_THREAD=f |
1056 |
|
OUTDIR= |
1057 |
|
DELDIR= |
1058 |
|
USE_R4= |
1059 |
|
EXTRFLG= |
1060 |
|
NOCATAD= |
1061 |
|
|
1062 |
|
#- type of testing (KIND): |
1063 |
|
# KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ; |
1064 |
|
# KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD |
1065 |
|
KIND=0 |
1066 |
|
|
1067 |
|
# list of pTracers to check for monitor output |
1068 |
|
PTRACERS_NUM="1 2 3 4 5" |
1069 |
|
|
1070 |
echo -n "parsing options... " |
MATCH_CRIT=10 |
1071 |
|
|
1072 |
|
printf "parsing options... " |
1073 |
|
|
1074 |
ac_prev= |
ac_prev= |
1075 |
for ac_option ; do |
for ac_option ; do |
1082 |
fi |
fi |
1083 |
|
|
1084 |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
1085 |
|
|
1086 |
case $ac_option in |
case $ac_option in |
1087 |
|
|
1088 |
-help | --help | -h | --h) |
-help | --help | -h | --h) usage ;; |
|
usage ;; |
|
|
|
|
|
-optfile | --optfile | -of | --of) |
|
|
ac_prev=OPTFILE ;; |
|
|
-optfile=* | --optfile=* | -of=* | --of=*) |
|
|
OPTFILE=$ac_optarg ;; |
|
|
|
|
|
-addr | --addr | -a | --a) |
|
|
ac_prev=ADDRESSES ;; |
|
|
-addr=* | --addr=*) |
|
|
ADDRESSES=$ac_optarg ;; |
|
|
|
|
|
-tdir | --tdir | -t | --t) |
|
|
ac_prev=TESTDIRS ;; |
|
|
-tdir=* | --tdir=*) |
|
|
TESTDIRS=$ac_optarg ;; |
|
|
|
|
|
-bash | --bash | -b | --b) |
|
|
ac_prev=BASH ;; |
|
|
-bash=* | --bash=*) |
|
|
BASH=$ac_optarg ;; |
|
|
|
|
|
-command | --command | -c | --c) |
|
|
ac_prev=COMMAND ;; |
|
|
-command=* | --command=*) |
|
|
COMMAND=$ac_optarg ;; |
|
|
|
|
|
-make | --make | -m | --m) |
|
|
ac_prev=MAKE ;; |
|
|
-make=* | --make=*) |
|
|
MAKE=$ac_optarg ;; |
|
|
|
|
|
-clean | --clean) |
|
|
CLEANUP=t ;; |
|
|
|
|
|
-quick | --quick | -q | --q) |
|
|
QUICK=t ;; |
|
|
-nogenmake | --nogenmake | -ng | --ng) |
|
|
NOGENMAKE=t ;; |
|
|
-noclean | --noclean | -nc | --nc) |
|
|
NOCLEAN=t ;; |
|
|
-nodepend | --nodepend | -nd | --nd) |
|
|
NODEPEND=t ;; |
|
1089 |
|
|
1090 |
-mpi) MPI=true ;; |
-optfile | --optfile | -of | --of) ac_prev=OPTFILE ;; |
1091 |
|
-optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;; |
1092 |
|
|
1093 |
-ieee) IEEE=true ;; |
-addr | --addr | -a | --a) ac_prev=ADDRESSES ;; |
1094 |
-noieee) IEEE= ;; |
-addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;; |
1095 |
|
-mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;; |
1096 |
|
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;; |
1097 |
|
|
1098 |
|
-send | --send ) ac_prev=SENDCMD ;; |
1099 |
|
-send=* | --send=* ) SENDCMD=$ac_optarg ;; |
1100 |
|
-savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;; |
1101 |
|
-savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;; |
1102 |
|
|
1103 |
|
-tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;; |
1104 |
|
-tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;; |
1105 |
|
-skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;; |
1106 |
|
-skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;; |
1107 |
|
|
1108 |
|
-bash | --bash | -b | --b) ac_prev=BASH ;; |
1109 |
|
-bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;; |
1110 |
|
|
1111 |
|
-command | --command | -c | --c) ac_prev=COMMAND ;; |
1112 |
|
-command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;; |
1113 |
|
|
1114 |
|
-makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;; |
1115 |
|
-makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;; |
1116 |
|
|
1117 |
|
-make | --make | -m | --m) ac_prev=MAKE ;; |
1118 |
|
-make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;; |
1119 |
|
|
1120 |
|
-repl_mk | --repl_mk ) ac_prev=MAKE_CMD ;; |
1121 |
|
-repl_mk=* | --repl_mk=*) MAKE_CMD=$ac_optarg ;; |
1122 |
|
|
1123 |
|
-odir | --odir) ac_prev=OUTDIR ;; |
1124 |
|
-odir=* | --odir=*) OUTDIR=$ac_optarg ;; |
1125 |
|
|
1126 |
|
-ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;; |
1127 |
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;; |
1128 |
|
|
1129 |
|
-match | --match ) ac_prev=MATCH_CRIT ;; |
1130 |
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
1131 |
|
|
1132 |
|
-j | --j) ac_prev=JOBS ;; |
1133 |
|
-j=* | --j=*) JOBS=$ac_optarg ;; |
1134 |
|
|
1135 |
|
-ef | --ef) ac_prev=EXTRFLG ;; |
1136 |
|
-ef=* | --ef=*) EXTRFLG=$ac_optarg ;; |
1137 |
|
|
1138 |
|
-clean | --clean) CLEANUP=t ; DELDIR=t ;; |
1139 |
|
|
1140 |
|
-norun | --norun | -nr | --nr) NORUN=t ;; |
1141 |
|
-obj | --obj ) TARG='obj' ; NORUN=t ;; |
1142 |
|
-runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;; |
1143 |
|
-quick | --quick | -q | --q) QUICK=t ;; |
1144 |
|
-nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;; |
1145 |
|
-noclean | --noclean | -nc | --nc) NOCLEAN=t ;; |
1146 |
|
-nodepend | --nodepend | -nd | --nd) NODEPEND=t ;; |
1147 |
|
|
1148 |
|
-postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;; |
1149 |
|
-deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;; |
1150 |
|
|
1151 |
|
-mpi | --mpi) MPI=2 ;; |
1152 |
|
-MPI | --MPI) ac_prev=MPI ;; |
1153 |
|
-MPI=* | --MPI=*) MPI=$ac_optarg ;; |
1154 |
|
|
1155 |
|
-mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;; |
1156 |
|
-mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;; |
1157 |
|
|
1158 |
|
-mth) MULTI_THREAD=t ;; |
1159 |
|
|
1160 |
|
-tlm) if test $KIND = 0 ; then KIND=1 ; else |
1161 |
|
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage |
1162 |
|
fi ;; |
1163 |
|
-adm | -ad) if test $KIND = 0 ; then KIND=2 ; else |
1164 |
|
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage |
1165 |
|
fi ;; |
1166 |
|
-oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else |
1167 |
|
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage |
1168 |
|
fi ;; |
1169 |
|
-ncad) NOCATAD=t ;; |
1170 |
|
|
1171 |
|
-ieee) echo "Warning: ignore option '-ieee' (already the default)" |
1172 |
|
printf " ... " ;; |
1173 |
|
-noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)" |
1174 |
|
printf " ... " ; OptLev=`expr $OptLev \* 2` ;; |
1175 |
|
-fast) OptLev=`expr $OptLev \* 2` ;; |
1176 |
|
-devel) OptLev=0 ;; |
1177 |
|
-gsl) GSL=t ;; |
1178 |
|
|
1179 |
-verbose) verbose=2 ;; |
-verbose) verbose=2 ;; |
1180 |
-debug) debug=1 ;; |
-debug) debug=1 ;; |
1181 |
-quiet) verbose=0 ;; |
-quiet) verbose=0 ;; |
1182 |
|
|
1183 |
-*) |
-deldir | -dd) DELDIR=t ;; |
1184 |
echo "Error: unrecognized option: "$ac_option |
|
1185 |
usage |
-use_r4|-ur4) USE_R4=t ;; |
1186 |
;; |
|
1187 |
|
-ts) TS=t;; |
1188 |
*) |
-papis) PAPIS=t;; |
1189 |
echo "Error: unrecognized argument: "$ac_option |
-pcls) PCLS=t;; |
1190 |
usage |
|
1191 |
;; |
-*) echo "Error: unrecognized option: "$ac_option |
1192 |
|
usage ;; |
1193 |
|
*) echo "Error: unrecognized argument: "$ac_option |
1194 |
|
usage ;; |
1195 |
|
|
1196 |
esac |
esac |
1197 |
|
|
1198 |
done |
done |
1199 |
|
|
1200 |
if test "x$QUICK" = xt ; then |
if test "x$QUICK" = xt ; then |
1202 |
NOCLEAN=t |
NOCLEAN=t |
1203 |
NODEPEND=t |
NODEPEND=t |
1204 |
fi |
fi |
1205 |
|
if test "x$MAKE_CMD" = x ; then MAKE_CMD=$MAKE ; fi |
1206 |
|
|
1207 |
|
#- check length of MPI machine file: |
1208 |
|
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then |
1209 |
|
if test -r $MPI_MFILE ; then |
1210 |
|
nl=`wc -l $MPI_MFILE | awk '{print $1}'` |
1211 |
|
if [ $nl -lt $MPI ] ; then |
1212 |
|
echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE" |
1213 |
|
usage |
1214 |
|
fi |
1215 |
|
if [ $verbose -gt 1 ]; then |
1216 |
|
echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run" |
1217 |
|
fi |
1218 |
|
else |
1219 |
|
echo "Error: cannot access MPI_MFILE=$MPI_FILE" |
1220 |
|
usage |
1221 |
|
fi |
1222 |
|
fi |
1223 |
|
|
1224 |
|
#- setting for forward or ADM testing |
1225 |
|
if test $KIND = 1 ; then |
1226 |
|
TARG=ftlall |
1227 |
|
code_dir=code_ad |
1228 |
|
inputdir=input_ad |
1229 |
|
ref_outp="output_tlm.txt" |
1230 |
|
EXECUTABLE="mitgcmuv_ftl" |
1231 |
|
elif test $KIND = 2 ; then |
1232 |
|
if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi |
1233 |
|
code_dir=code_ad |
1234 |
|
inputdir=input_ad |
1235 |
|
ref_outp="output_adm.txt" |
1236 |
|
EXECUTABLE="mitgcmuv_ad" |
1237 |
|
elif test $KIND = 4 ; then |
1238 |
|
TARG=adAll |
1239 |
|
code_dir=code_oad |
1240 |
|
inputdir=input_oad |
1241 |
|
ref_outp="output_oadm.txt" |
1242 |
|
EXECUTABLE="mitgcmuv_ad" |
1243 |
|
else |
1244 |
|
code_dir=code |
1245 |
|
inputdir=input |
1246 |
|
ref_outp="output.txt" |
1247 |
|
EXECUTABLE="mitgcmuv" |
1248 |
|
fi |
1249 |
|
if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi |
1250 |
|
|
1251 |
|
xx=`echo $TESTDIRS | awk '{print $1}'` |
1252 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
1253 |
TESTDIRS=`scandirs` |
LIST=`scandirs results/$ref_outp` |
1254 |
|
elif test $xx = 'start_from' ; then |
1255 |
|
xx=`echo $TESTDIRS | awk '{print $2}'` |
1256 |
|
LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"` |
1257 |
|
else |
1258 |
|
#- expand group of experiments: |
1259 |
|
LIST=" " |
1260 |
|
for xx in $TESTDIRS |
1261 |
|
do |
1262 |
|
case $xx in |
1263 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
1264 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
1265 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
1266 |
|
;; |
1267 |
|
'tutorials') |
1268 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
1269 |
|
*) LIST=${LIST}" "$xx ;; |
1270 |
|
esac |
1271 |
|
done |
1272 |
fi |
fi |
1273 |
|
#echo 'LIST='${LIST}'<' |
1274 |
|
#- skip dirs, remove duplicate and non-directory: |
1275 |
|
TESTDIRS=" " |
1276 |
|
count=0 |
1277 |
|
for xx in $LIST |
1278 |
|
do |
1279 |
|
yy=`echo $SKIPDIRS | grep -c $xx` |
1280 |
|
if test $yy = 0 ; then |
1281 |
|
if test -d $xx ; then |
1282 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
1283 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
1284 |
|
else count=1 ; |
1285 |
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
1286 |
|
fi |
1287 |
|
else |
1288 |
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
1289 |
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
1290 |
|
fi |
1291 |
|
fi |
1292 |
|
done |
1293 |
|
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
1294 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
1295 |
|
|
1296 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
1297 |
OPTFILE=$MITGCM_OF |
OPTFILE=$MITGCM_OF |
1298 |
fi |
fi |
1299 |
|
|
1300 |
echo "OK" |
LOC_MFILE='tr_mpi_mfile' |
1301 |
|
RUNLOG="run.tr_log" |
1302 |
|
if test "x$MPI" = x0 ; then |
1303 |
|
OUTPUTFILE=$ref_outp |
1304 |
|
if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi |
1305 |
|
else |
1306 |
|
OUTPUTFILE="STDOUT.0000" |
1307 |
|
if test "x$COMMAND" = x ; then COMMAND="mpirun -v -np TR_NPROC ./$EXECUTABLE" ; fi |
1308 |
|
fi |
1309 |
|
|
1310 |
|
echo "OK (COMMAND='$COMMAND')" |
1311 |
|
|
1312 |
|
#TMP=./tr_$$ |
1313 |
|
#- try to put temporary files in system-local /tmp dir |
1314 |
|
TMP=/tmp/tr_${USER}_$$ |
1315 |
|
touch $TMP ; retVal=$? |
1316 |
|
if [ $retVal -eq 0 ] ; then |
1317 |
|
if test ! -r $TMP ; then TMP=./tr_$$ ; fi |
1318 |
|
else |
1319 |
|
TMP=./tr_$$ |
1320 |
|
fi |
1321 |
|
rm -f $TMP |
1322 |
|
if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi |
1323 |
|
|
1324 |
|
# set the Default List of output variables to be checked: |
1325 |
|
# (use default or load experiment-specific list from file "tr_checklist") |
1326 |
|
# content : 1rst = main variable used to decide if it pass or FAIL |
1327 |
|
# others = number of matching digits to be printed in summary.txt |
1328 |
|
if test $KIND = 1 ; then |
1329 |
|
DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd' |
1330 |
|
EMPTY_RESULTS='.. .. ..' |
1331 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1332 |
|
elif test $KIND = 2 -o $KIND = 4 ; then |
1333 |
|
DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd' |
1334 |
|
EMPTY_RESULTS='.. .. ..' |
1335 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1336 |
|
else |
1337 |
|
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
1338 |
|
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
1339 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1340 |
|
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
1341 |
|
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
1342 |
|
fi |
1343 |
|
|
1344 |
# create the FORTRAN comparison code |
# create the FORTRAN comparison code |
1345 |
createcodelet |
if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then |
1346 |
|
echo "skipping comparison code build" |
1347 |
|
else |
1348 |
|
createcodelet |
1349 |
|
fi |
1350 |
|
|
1351 |
# build the mpack utility |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1352 |
build_mpack |
if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then |
1353 |
|
echo "skipping mpack build" |
1354 |
|
else |
1355 |
|
build_mpack |
1356 |
|
if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi |
1357 |
|
fi |
1358 |
|
|
1359 |
# Create a uniquely named directory to store results |
# Create a uniquely named directory to store results |
1360 |
|
CMDLINE=$0 |
1361 |
|
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1362 |
|
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else |
1363 |
|
nb=`echo $xx | grep -c '='` |
1364 |
|
if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'" |
1365 |
|
else yy=`echo "$xx'" | sed "s/=/='/"` ; |
1366 |
|
CMDLINE="$CMDLINE $yy" ; fi |
1367 |
|
fi |
1368 |
|
done |
1369 |
MACH=`hostname` |
MACH=`hostname` |
1370 |
UNAMEA=`uname -a` |
UNAMEA=`uname -a` |
1371 |
DATE=`date +%Y%m%d` |
DATE=`date +%Y%m%d` |
1372 |
BASE=$MACH"_"$DATE"_" |
BASE="tr_"$MACH"_"$DATE"_" |
1373 |
|
if test "x$OUTDIR" != x ; then |
1374 |
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
1375 |
|
else |
1376 |
|
#short_name=`hostname -s | tr '[:upper:]' '[:lower:]'` |
1377 |
|
# hostname -s is not universal (does work on AIX system) |
1378 |
|
short_name=`hostname | sed 's/\..*$//' | tr '[:upper:]' '[:lower:]'` |
1379 |
|
BASE="tr_"$short_name"_"$DATE"_" |
1380 |
|
fi |
1381 |
DNUM=0 |
DNUM=0 |
1382 |
DRESULTS="$BASE$DNUM" |
DRESULTS="$BASE$DNUM" |
1383 |
while test -e $DRESULTS ; do |
while test -e $DRESULTS ; do |
1387 |
mkdir $DRESULTS |
mkdir $DRESULTS |
1388 |
RETVAL=$? |
RETVAL=$? |
1389 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
1390 |
echo "Error: can't create results directory \"./$DRESULTS\"" |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
1391 |
exit 1 |
exit 1 |
1392 |
fi |
fi |
1393 |
SUMMARY="$DRESULTS/summary.txt" |
SUMMARY="$DRESULTS/summary.txt" |
1394 |
echo -n "Start time: " >> $SUMMARY |
start_date=`date` |
1395 |
date > $SUMMARY |
echo $start_date > $SUMMARY |
1396 |
date > dfile |
echo 'run:' $CMDLINE >> $SUMMARY |
1397 |
cat << EOF >> $SUMMARY |
echo 'on :' $UNAMEA >> $SUMMARY |
|
T S U V |
|
|
G D M c m s m s m s m s |
|
|
E p a R g m m e . m m e . m m e . m m e . |
|
|
N n k u 2 i a a d i a a d i a a d i a a d |
|
|
2 d e n d n x n . n x n . n x n . n x n . |
|
|
|
|
|
EOF |
|
|
|
|
|
NDIR=0 |
|
1398 |
|
|
1399 |
of_path= |
of_path= |
1400 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
1408 |
fi |
fi |
1409 |
file=${OPTFILE##*/} |
file=${OPTFILE##*/} |
1410 |
OPTFILE=$of_path/$file |
OPTFILE=$of_path/$file |
1411 |
|
cp $OPTFILE $DRESULTS |
1412 |
|
echo >> $SUMMARY |
1413 |
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
1414 |
else |
else |
1415 |
echo |
echo | tee -a $SUMMARY |
1416 |
echo "WARNING: can't read OPTFILE=\"$OPTFILE\" but will try to use it..." |
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY |
1417 |
|
exit 1 |
1418 |
fi |
fi |
1419 |
|
else |
1420 |
|
echo >> $SUMMARY |
1421 |
|
echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY |
1422 |
|
#-note: to be filled later after 1rst run |
1423 |
fi |
fi |
1424 |
echo |
echo |
|
echo "OPTFILE=$OPTFILE" >> $SUMMARY |
|
1425 |
echo >> $SUMMARY |
echo >> $SUMMARY |
1426 |
|
if test $KIND = 0 ; then |
1427 |
|
line_0=`printf '%s %2i' 'default' $MATCH_CRIT` |
1428 |
|
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1429 |
|
line_1="G D M c m s m s m s m s" |
1430 |
|
line_2="e p a R g m m e . m m e . m m e . m m e ." |
1431 |
|
line_3="n n k u 2 i a a d i a a d i a a d i a a d" |
1432 |
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1433 |
|
for ii in $PTRACERS_NUM ; do |
1434 |
|
line_0="$line_0 --PTR 0"$ii"--" |
1435 |
|
line_1="$line_1 m s" |
1436 |
|
line_2="$line_2 m m e ." |
1437 |
|
line_3="$line_3 i a a d" |
1438 |
|
line_4="$line_4 n x n ." |
1439 |
|
done |
1440 |
|
else |
1441 |
|
line_0=`printf '%s %2i' 'default ' $MATCH_CRIT` |
1442 |
|
if test $KIND = 1 ; then |
1443 |
|
#echo "TANGLIN=true" >> $SUMMARY |
1444 |
|
echo "TangLin generated by TAF" >> $SUMMARY |
1445 |
|
elif test $KIND = 3 ; then |
1446 |
|
echo "TangLin generated by OpenAD" >> $SUMMARY |
1447 |
|
elif test $KIND = 2 ; then |
1448 |
|
#echo "ADJOINT=true" >> $SUMMARY |
1449 |
|
echo "Adjoint generated by TAF" >> $SUMMARY |
1450 |
|
else |
1451 |
|
echo "Adjoint generated by OpenAD" >> $SUMMARY |
1452 |
|
fi |
1453 |
|
if test $KIND = 1 -o $KIND = 3 ; then |
1454 |
|
line_1="G D M C T F" |
1455 |
|
line_2="e p a R o L D" |
1456 |
|
else |
1457 |
|
line_1="G D M C A F" |
1458 |
|
line_2="e p a R o d D" |
1459 |
|
fi |
1460 |
|
line_3="n n k u s G G" |
1461 |
|
line_4="2 d e n t r r" |
1462 |
|
echo >> $SUMMARY |
1463 |
|
fi |
1464 |
|
if test "x$CLEANUP" != xt ; then |
1465 |
|
echo "$line_0" | tee -a $SUMMARY |
1466 |
|
echo "$line_1" | tee -a $SUMMARY |
1467 |
|
echo "$line_2" | tee -a $SUMMARY |
1468 |
|
echo "$line_3" | tee -a $SUMMARY |
1469 |
|
echo "$line_4" | tee -a $SUMMARY |
1470 |
|
echo "" | tee -a $SUMMARY |
1471 |
|
fi |
1472 |
|
echo "-------------------------------------------------------------------------------" |
1473 |
|
|
1474 |
# ...and each test directory... |
# ...and each test directory... |
1475 |
for dir in $TESTDIRS ; do |
for dir in $TESTDIRS ; do |
1476 |
|
|
1477 |
|
# set builddir & rundir: |
1478 |
|
builddir="build" |
1479 |
|
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1480 |
|
rundir="run" |
1481 |
|
pfxdir="tr_$rundir" |
1482 |
|
if test ! -d $dir/$rundir ; then |
1483 |
|
rundir=$builddir |
1484 |
|
fi |
1485 |
|
CODE_DIR=$dir/$code_dir |
1486 |
|
BUILD_DIR=$dir/$builddir |
1487 |
|
|
1488 |
# Cleanup only! |
# Cleanup only! |
1489 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1490 |
if test -r $dir/build/Makefile ; then |
echo -n ' --- dir:' $BUILD_DIR ': ' |
1491 |
( cd $dir/build ; make CLEAN ) |
makeclean $BUILD_DIR |
1492 |
|
( cd $BUILD_DIR |
1493 |
|
rm -f $EXECUTABLE *.bak |
1494 |
|
rm -f genmake_state genmake_*optfile genmake.log |
1495 |
|
rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
1496 |
|
rm -rf mpi_headers |
1497 |
|
) |
1498 |
|
if test -d $dir/$rundir/CVS ; then |
1499 |
|
echo -n ' --- dir:' $dir/$rundir ': ' |
1500 |
|
run_clean $dir/$rundir |
1501 |
fi |
fi |
1502 |
if test -r $dir/input/Makefile ; then |
trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')` |
1503 |
( cd $dir/input ; make CLEAN ) |
ttd=`echo $trdir | wc -w` |
1504 |
|
if test $ttd != 0 ; then |
1505 |
|
echo ' --- rm dir:' $trdir |
1506 |
|
( cd $dir ; rm -rf $trdir ) |
1507 |
fi |
fi |
1508 |
continue |
continue |
1509 |
fi |
fi |
1510 |
|
|
1511 |
# Verify that the testdir exists and contains previous |
# Verify that the testdir exists and contains previous |
1512 |
# results in the correct location--or skip this directory! |
# results in the correct location--or skip this directory! |
1513 |
if test ! -r $dir"/results/output.txt" ; then |
fout=$dir"/results/"$ref_outp |
1514 |
echo "can't read \"$dir/results/output.txt\" -- skipping $dir" |
#if test ! -r $fout ; then |
1515 |
|
if test ! -r $fout -a ! -r ${fout}.gz ; then |
1516 |
|
echo "can't read \"$fout\" -- skipping $dir" |
1517 |
continue |
continue |
1518 |
fi |
fi |
1519 |
|
|
1520 |
echo "-------------------------------------------------------------------------------" |
# Check for specific files for particular type of run |
|
echo |
|
|
echo "Experiment: $dir" |
|
|
echo |
|
|
unset genmake makedepend make run |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
|
1521 |
|
|
1522 |
builddir="input" |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then |
1523 |
rundir="input" |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1524 |
use_seperate_build=0 |
continue |
1525 |
if test -d $dir/build -a -r $dir/build ; then |
fi |
1526 |
builddir="build" |
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1527 |
rundir="build" |
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1528 |
use_seperate_build=1 |
continue |
|
linkdata $use_seperate_build $dir/$rundir |
|
1529 |
fi |
fi |
|
|
|
|
CODE_DIR=$dir/code |
|
|
BUILD_DIR=$dir/$builddir |
|
|
MPI_FILES="CPP_EEOPTIONS.h_mpi SIZE.h_mpi" |
|
|
NOMPI_FILES="CPP_EEOPTIONS.h_nompi SIZE.h_nompi" |
|
1530 |
|
|
1531 |
# Is this an MPI run? |
if test "x$MPI" != "x0" ; then |
1532 |
if test "x$MPI" = xt ; then |
ntx=1 ; nty=1 |
1533 |
FILES=$MPI_FILES |
if test "x$MULTI_THREAD" = "xt" ; then |
1534 |
endings="_mpi" |
ff=$dir"/input/eedata.mth" |
1535 |
else |
ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
1536 |
FILES=$NOMPI_FILES |
nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
1537 |
endings="_nompi" |
if test "x$ntx" = x ; then ntx=1 ; fi |
1538 |
fi |
if test "x$nty" = x ; then nty=1 ; fi |
1539 |
|
fi |
1540 |
# Check to see that we have the files |
#- create new SIZE.h with no more than '$MPI' Procs |
1541 |
have_files=t |
mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty |
1542 |
for i in $FILES ; do |
LOC_NPROC=$? |
1543 |
if test ! -r $CODE_DIR/$i ; then |
( cd $BUILD_DIR |
1544 |
echo "Warning: can't read file $CODE_DIR/$i" |
if test -r SIZE.h.mpi ; then |
1545 |
have_files=f |
cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$? |
1546 |
|
else RETVAL=1 |
1547 |
|
fi |
1548 |
|
if test "x$RETVAL" = x0 ; then |
1549 |
|
rm -f tr_size.mpi |
1550 |
|
else |
1551 |
|
rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi |
1552 |
|
fi |
1553 |
|
) |
1554 |
|
if test "x$MPI_MFILE" != x ; then |
1555 |
|
#- create new MPI machine-file with the right number of Procs |
1556 |
|
rm -f $LOC_MFILE |
1557 |
|
cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE |
1558 |
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1559 |
|
if [ $nl -lt $LOC_NPROC ] ; then |
1560 |
|
rm -f $LOC_MFILE |
1561 |
|
cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE |
1562 |
|
#sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE |
1563 |
|
fi |
1564 |
|
if [ $verbose -gt 1 ]; then |
1565 |
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1566 |
|
echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC" |
1567 |
|
fi |
1568 |
|
fi |
1569 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1570 |
|
retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"` |
1571 |
|
if test $retv != 0 ; then |
1572 |
|
echo "input/eedata.mth tiling misfit -- skipping $dir" |
1573 |
|
continue |
1574 |
|
fi |
1575 |
fi |
fi |
|
done |
|
|
if test "x$have_files" != xt -a "x$MPI" = xt ; then |
|
|
echo "Skipping $dir due to lack of input files (see above warning)" |
|
|
continue |
|
1576 |
fi |
fi |
1577 |
|
|
1578 |
# If we have the $FILES and they differ, copy the $FILES to $BUILD_DIR |
# Check whether there are "extra runs" for this testdir |
1579 |
if test "x$have_files" = xt ; then |
extra_runs= |
1580 |
for i in $FILES ; do |
if test "x$NORUN" = xf ; then |
1581 |
sstr="s|$endings||" |
ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )` |
1582 |
name=`echo $i | sed -e $sstr ` |
fi |
1583 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
#echo "ex_run_dirs='$ex_run_dirs'" |
1584 |
RETVAL=$? |
for exd in $ex_run_dirs ; do |
1585 |
if test "x$RETVAL" != x0 ; then |
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1586 |
cp $CODE_DIR/$i $BUILD_DIR/$name |
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1587 |
|
outf="$dir/results/$refExOut" |
1588 |
|
if test -r $outf -o -r ${outf}.gz ; then |
1589 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1590 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1591 |
|
if test "x$MPI" = "x0" ; then |
1592 |
|
extra_runs="$extra_runs $name" |
1593 |
|
else |
1594 |
|
retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"` |
1595 |
|
if test $retv = 0 ; then |
1596 |
|
extra_runs="$extra_runs $name" |
1597 |
|
else |
1598 |
|
echo $exd"/eedata.mth tiling misfit -- skipping $dir" |
1599 |
|
fi |
1600 |
|
fi |
1601 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1602 |
fi |
fi |
1603 |
done |
else |
1604 |
|
extra_runs="$extra_runs $name" |
1605 |
|
fi |
1606 |
|
fi |
1607 |
|
done |
1608 |
|
|
1609 |
|
echo |
1610 |
|
if test "x$extra_runs" = "x" ; then |
1611 |
|
echo "Experiment: $dir" |
1612 |
|
else |
1613 |
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1614 |
fi |
fi |
1615 |
|
echo |
1616 |
# Create an output dir for each OPTFILE/tdir combination |
unset genmake makedepend make run |
1617 |
CDIR=$DRESULTS"/"$DRESULTS"_"$NDIR |
results=$EMPTY_RESULTS |
1618 |
mkdir $CDIR |
|
1619 |
CDIR=`pwd`"/$CDIR" |
# Create an output dir & summary.txt file for each tested experiment (tdir) |
1620 |
|
locDIR=$DRESULTS"/"$dir |
1621 |
if test "x$CLEANUP" = xt ; then |
mkdir $locDIR |
1622 |
makeclean $dir/$builddir |
#- report to this experiment local summary file --- |
1623 |
|
echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt" |
1624 |
|
echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1625 |
|
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1626 |
|
CDIR=`pwd`"/$locDIR" |
1627 |
|
|
1628 |
|
if test "x$NORUN" = xt ; then |
1629 |
|
run=N |
1630 |
|
genmakemodel $dir/$builddir && genmake=Y \ |
1631 |
|
&& makeclean $dir/$builddir \ |
1632 |
|
&& symlink_mpifiles $dir $code_dir $builddir \ |
1633 |
|
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1634 |
|
&& makemodel $dir/$builddir && make=Y |
1635 |
else |
else |
1636 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1637 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1638 |
|
&& symlink_mpifiles $dir $code_dir $builddir \ |
1639 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1640 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1641 |
&& linkdata $use_seperate_build $dir/$rundir \ |
&& run_clean $dir/$rundir \ |
1642 |
|
&& linkdata $dir/$rundir $inputdir \ |
1643 |
&& runmodel $dir/$rundir && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1644 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1645 |
fi |
fi |
1646 |
|
#echo "results='$results'" |
1647 |
echo |
|
1648 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} \ |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1649 |
${run:-N} $results |
echo 1>&2 |
1650 |
echo |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1651 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} \ |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1652 |
${run:-N} $results >> $SUMMARY |
|
1653 |
echo "fresults='" > $CDIR"/summary.txt" |
for ex in $extra_runs ; do |
1654 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} \ |
unset run |
1655 |
${run:-N} $results >> $CDIR"/summary.txt" |
results=$EMPTY_RESULTS |
1656 |
echo "'" >> $CDIR"/summary.txt" |
# reference output file |
1657 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1658 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
# Create an output dir & summary.txt file for each extra run (tdir.ex) |
1659 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
locDIR=$DRESULTS"/"$dir"."$ex |
1660 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
mkdir $locDIR |
1661 |
|
#- report to this experiment local summary file --- |
1662 |
( |
echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt" |
1663 |
cd $DRESULTS |
#echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1664 |
tar -cf $NDIR".tar" $DRESULTS"_"$NDIR > /dev/null 2>&1 |
#echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1665 |
gzip $NDIR".tar" |
CDIR=`pwd`"/$locDIR" |
1666 |
) |
test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex" |
1667 |
|
run_clean $dir/$pfxdir.$ex |
1668 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir |
1669 |
echo "No mail sent" |
runmodel $dir/$pfxdir.$ex && run=Y \ |
1670 |
else |
&& results=`testoutput_run $dir $pfxdir.$ex $refExOut` |
1671 |
$MPACK -s MITgcm-test -m 1000000 $DRESULTS"/"$NDIR".tar.gz" $ADDRESSES |
fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1672 |
RETVAL=$? |
echo 1>&2 |
1673 |
if test "x$RETVAL" != x0 ; then |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1674 |
echo "Warning: \"$MPACK\" failed -- please contact <edhill@mitgcm.org>" |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1675 |
else |
if test "x$POSTCLEAN" = x2 ; then |
1676 |
rm -f $DRESULTS"/"$NDIR".tar*" |
run_clean $dir/$pfxdir.$ex |
1677 |
|
fi |
1678 |
|
done |
1679 |
|
|
1680 |
|
if test ! -f $DRESULTS"/"genmake_state ; then |
1681 |
|
if test -f $dir/$builddir/Makefile ; then |
1682 |
|
mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'` |
1683 |
|
echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state |
1684 |
|
# sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state |
1685 |
|
# bsd-sed cannot do the above code |
1686 |
|
cat $dir/$builddir/Makefile | \ |
1687 |
|
sed -n '/^# executed by:/{N |
1688 |
|
p |
1689 |
|
}' >> $DRESULTS/genmake_state |
1690 |
|
echo " $mkOpt" >> $DRESULTS/genmake_state |
1691 |
|
if test "x$OPTFILE" = xNONE ; then |
1692 |
|
eval $mkOpt |
1693 |
|
# sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\ |
1694 |
|
# $SUMMARY > tmp.tr_log |
1695 |
|
# bsd-sed requires a newline after "a\": |
1696 |
|
sed "/^No \"OPTFILE\" was specified ; genmake2/a\\ |
1697 |
|
OPTFILE=${OPTFILE}" $SUMMARY > tmp.tr_log |
1698 |
|
RETVAL=$? |
1699 |
|
if test "x$RETVAL" = x0 ; then |
1700 |
|
cp -f tmp.tr_log $SUMMARY |
1701 |
|
fi |
1702 |
|
rm -f tmp.tr_log |
1703 |
|
fi |
1704 |
|
gmkLog=$dir/$builddir/genmake.log |
1705 |
|
if test -r $gmkLog ; then |
1706 |
|
grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1 |
1707 |
|
RETVAL=$? |
1708 |
|
if test "x$RETVAL" = x0 ; then |
1709 |
|
echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state |
1710 |
|
echo "extract compiler version:" >> $DRESULTS/genmake_state |
1711 |
|
sed -n '/Get compiler version/,/<-- compiler version/p' \ |
1712 |
|
$gmkLog | grep -v '^... compiler version ' > tmp.tr_log |
1713 |
|
sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state |
1714 |
|
sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \ |
1715 |
|
>> $DRESULTS/genmake_state |
1716 |
|
rm -f tmp.tr_log |
1717 |
|
fi |
1718 |
|
echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state |
1719 |
|
echo "get NETCDF & LAPACK settings:" >> $DRESULTS/genmake_state |
1720 |
|
sed -n '/set HAVE_NETCDF=/p' $gmkLog >> $DRESULTS/genmake_state |
1721 |
|
sed -n '/set HAVE_LAPACK=/p' $gmkLog >> $DRESULTS/genmake_state |
1722 |
|
fi |
1723 |
fi |
fi |
1724 |
fi |
fi |
1725 |
|
#postclean $dir/$builddir |
1726 |
|
if test "x$POSTCLEAN" = x2 ; then |
1727 |
|
makeclean $dir/$builddir \ |
1728 |
|
&& run_clean $dir/$rundir |
1729 |
|
fi |
1730 |
|
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi |
1731 |
|
|
1732 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1733 |
|
|
|
NDIR=$(( $NDIR + 1 )) |
|
|
|
|
1734 |
done |
done |
1735 |
|
|
1736 |
echo -n "Start time: " >> $SUMMARY |
printf "Start time: " >> $SUMMARY |
1737 |
date -r dfile >> $SUMMARY |
echo "$start_date" >> $SUMMARY |
1738 |
echo -n "End time: " >> $SUMMARY |
printf "End time: " >> $SUMMARY |
1739 |
date >> $SUMMARY |
date >> $SUMMARY |
1740 |
|
|
1741 |
rm tmp_cmpnum.f a.out dfile |
# If addresses were supplied and mpack built successfully, then try |
1742 |
|
# to send email using mpack. |
1743 |
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1744 |
|
echo "No results email was sent." |
1745 |
|
else |
1746 |
|
if test "x$SENDCMD" != x ; then |
1747 |
|
if [ $verbose -gt 1 ]; then |
1748 |
|
echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES" |
1749 |
|
fi |
1750 |
|
tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \ |
1751 |
|
&& gzip ${SAVDIR}/${DRESULTS}".tar" \ |
1752 |
|
&& $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES |
1753 |
|
RETVAL=$? |
1754 |
|
if test "x$RETVAL" != x0 ; then |
1755 |
|
echo |
1756 |
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1757 |
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1758 |
|
echo " summary of results from the directory \"$DRESULTS\"." |
1759 |
|
echo |
1760 |
|
else |
1761 |
|
echo |
1762 |
|
echo "An email containing results was sent to the following addresses:" |
1763 |
|
echo " \"$ADDRESSES\"" |
1764 |
|
echo |
1765 |
|
test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar" |
1766 |
|
test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz" |
1767 |
|
fi |
1768 |
|
fi |
1769 |
|
fi |
1770 |
|
|
1771 |
|
if test "x$QUICK" = xf -a "x$NORUN" = xf ; then |
1772 |
|
rm -f tr_cmpnum.c tr_cmpnum |
1773 |
|
fi |
1774 |
|
|
1775 |
if test "x$CLEANUP" != xt ; then |
if test "x$CLEANUP" != xt ; then |
1776 |
cat $SUMMARY |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1777 |
if test -e tr.out ; then |
if test -e tr_out.txt ; then |
1778 |
mv tr.out tr.out.old |
mv tr_out.txt tr_out.txt.old |
1779 |
fi |
fi |
1780 |
cat $SUMMARY > tr.out |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1781 |
fi |
fi |
1782 |
|
|
1783 |
|
if test "x$DELDIR" = xt ; then |
1784 |
|
rm -rf $DRESULTS |
1785 |
|
fi |
1786 |
|
echo "======== End of testreport execution ========" |