--- MITgcm/verification/testreport	2004/12/16 20:25:11	1.61
+++ MITgcm/verification/testreport	2005/02/04 14:43:20	1.65
@@ -1,6 +1,6 @@
 #! /usr/bin/env bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/testreport,v 1.61 2004/12/16 20:25:11 edhill Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/testreport,v 1.65 2005/02/04 14:43:20 jmc Exp $
 #  $Name:  $
 #
 
@@ -529,7 +529,7 @@
     abave = 0.5*(fabs(a)+fabs(b));
     if (abave > 0.0) {
       relerr=fabs(a-b)/abave;
-      if (relerr > 0.0) { linnum = (int)log10(relerr); }
+      if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
       else { linnum = -16 ; }
       best = (best > linnum) ? best : linnum;
     }
@@ -875,6 +875,10 @@
 	if test -r $dir/input/Makefile ; then
 	    ( cd $dir/input ; make CLEAN )
 	fi
+	(
+	    cd $dir
+	    rm -rf tr_run.*
+	)
 	continue
     fi
 
@@ -972,7 +976,7 @@
 
 	for ex in $extra_runs ; do
 	    test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
-	    for ldir in build input input.$ex ; do
+	    for ldir in input.$ex input ; do
 		(
 		    cd "$dir/$ldir" > /dev/null 2>&1
 		    ls -1 2>/dev/null \
@@ -982,13 +986,27 @@
 		    cd "$dir/tr_run.$ex"
 		    cat ../../tr_exrun_links | while read i ; do
 			if test ! "x$i" = x ; then
-			    test -e $i  &&  rm -f $i
-			    ln -s "../"$ldir"/"$i $i
+			    test ! -r $i  &&  ln -s "../"$ldir"/"$i $i
 			fi
 		    done
 		)
 		test -e tr_exrun_links  &&  rm -f tr_exrun_links
 	    done
+	    ldir=build
+	    (
+		cd "$dir/$ldir" > /dev/null 2>&1
+		ls -1 Makefile *.[fFhco] mitgcmuv  2>/dev/null \
+		    | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
+	    ) > tr_exrun_links
+	    (
+		cd "$dir/tr_run.$ex"
+		    cat ../../tr_exrun_links | while read i ; do
+			if test ! "x$i" = x ; then
+			    test ! -r $i  &&  ln -s "../"$ldir"/"$i $i
+			fi
+		    done
+	    )
+	    test -e tr_exrun_links  &&  rm -f tr_exrun_links
 	    runmodel $dir/tr_run.$ex && run=Y \
 		&& results=`testoutput $dir tr_run.$ex "."$ex`
 	    fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
@@ -1054,11 +1072,11 @@
 rm -f tmp_cmpnum.c tmp_cmpnum
 
 if test "x$CLEANUP" != xt ; then
-    cat $SUMMARY
+    cat $SUMMARY | sed 's/ -- -- -- --//g'
     if test -e tr_out.txt ; then
         mv tr_out.txt tr_out.txt.old
     fi
-    cat $SUMMARY > tr_out.txt
+    cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
 fi
 
 if test "x$DELDIR" = xt ; then