11 |
echo |
echo |
12 |
echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
14 |
echo " (-mpi) use MPI input files" |
echo " (-mth) run multi-threaded (using eedata.mth)" |
15 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
echo " (-mpi) use MPI to compile and run on 2 processors" |
16 |
|
echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs" |
17 |
|
echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on" |
18 |
|
echo " (-ieee/-noieee) if possible, use IEEE compiler flags" |
19 |
echo " (DEF=\"-ieee\")" |
echo " (DEF=\"-ieee\")" |
20 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
echo " (-gsl) compile with \"-gsl\" flag" |
21 |
echo " (-a|-addr) STRING list of email recipients" |
echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable" |
22 |
echo " (DEF=\"edhill@mitgcm.org\")" |
echo " (-optfile|-of) STRING list of optfiles to use" |
23 |
echo " (-t|-tdir) STRING list of test dirs to use" |
echo " (-addr|-a) STRING list of email recipients" |
24 |
echo " (DEF=\"\" which builds all)" |
echo " (DEF=\"\" no email is sent)" |
25 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
echo " (-mpackdir|-mpd) DIR location of the mpack utility" |
26 |
|
echo " (DEF=\"../tools/mpack-1.6\")" |
27 |
|
echo " (-tdir|-t) STRING list of group and/or exp. dirs to test" |
28 |
|
echo " (recognized groups: basic, tutorials)" |
29 |
|
echo " (DEF=\"\" which test all)" |
30 |
|
echo " (if list= 'start_from THIS_EXP' then" |
31 |
|
echo " test THIS_EXP + all the following)" |
32 |
|
echo " (-skipdir|-skd) STRING list of exp. dirs to skip" |
33 |
|
echo " (DEF=\"\" which test all)" |
34 |
|
echo " (-bash|-b) STRING preferred location of a \"bash\" or" |
35 |
echo " Bourne-compatible \"sh\" shell" |
echo " Bourne-compatible \"sh\" shell" |
36 |
echo " (DEF=\"\" for \"bash\")" |
echo " (DEF=\"\" for \"bash\")" |
37 |
echo " (-adm|-ad) perform an adjoint run" |
echo " (-adm|-ad) perform an adjoint run" |
38 |
echo " (-command) STRING command to run" |
echo " (-oad) perform an OpenAD adjoint run" |
39 |
echo " (DEF=\"make output.txt\")" |
echo " (-command|-c) STRING command to run" |
40 |
echo " (-m|-make) STRING command to use for \"make\"" |
echo " (-makedepend|-md) STRING command to use for \"makedepend\"" |
41 |
|
echo " (-make|-m) STRING command to use for \"make\"" |
42 |
echo " (DEF=\"make\")" |
echo " (DEF=\"make\")" |
43 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
echo " (-odir) STRING used to build output directory name" |
44 |
echo " (DEF=\"1 2 3 4 5\")" |
echo " (DEF=\"hostname\")" |
45 |
|
# echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
46 |
|
# echo " (DEF=\"1 2 3 4 5\")" |
47 |
|
echo " (-match) NUMBER Matching Criteria (number of digits)" |
48 |
|
echo " (DEF=\"$MATCH_CRIT\")" |
49 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
50 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir" |
51 |
|
echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)" |
52 |
|
echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)" |
53 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
54 |
echo " (-nogenmake|-ng) skip the genmake stage" |
echo " (-nogenmake|-ng) skip the genmake stage" |
55 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
56 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
57 |
|
echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir" |
58 |
|
echo " (-deloutp|-do) delete output files after successful run" |
59 |
echo " (-deldir|-dd) on success, delete the output directory" |
echo " (-deldir|-dd) on success, delete the output directory" |
60 |
|
echo " (-ts) provide timing information per timestep" |
61 |
|
echo " (-papis) provide MFlop/s per timestep using PAPI" |
62 |
|
echo " (-pcls) provide MFlop/s per timestep using PCL" |
63 |
echo |
echo |
64 |
echo "and where STRING can be a whitespace-delimited list" |
echo "and where STRING can be a whitespace-delimited list" |
65 |
echo "such as:" |
echo "such as:" |
77 |
build_mpack() |
build_mpack() |
78 |
{ |
{ |
79 |
printf "building the mpack utility... " |
printf "building the mpack utility... " |
80 |
if test ! -x "$MPACKDIR/mpack" ; then |
MPACK="$MPACKDIR/mpack" |
81 |
|
if test ! -x $MPACK ; then |
82 |
if test ! -d $MPACKDIR ; then |
if test ! -d $MPACKDIR ; then |
83 |
echo |
echo |
84 |
echo "Error: can't find \"$MPACKDIR\"" |
echo "Error: can't find \"$MPACKDIR\"" |
87 |
echo |
echo |
88 |
HAVE_MPACK=f |
HAVE_MPACK=f |
89 |
fi |
fi |
|
printf "building mpack... " |
|
90 |
if test "x$CC" = x ; then |
if test "x$CC" = x ; then |
91 |
export CC=cc |
export CC=cc |
92 |
fi |
fi |
93 |
|
printf "building mpack (using CC=$CC)... " |
94 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
95 |
RETVAL=$? |
RETVAL=$? |
96 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
101 |
else |
else |
102 |
rm -f tr_build_mpack.out |
rm -f tr_build_mpack.out |
103 |
HAVE_MPACK=t |
HAVE_MPACK=t |
104 |
|
echo "done" |
105 |
fi |
fi |
106 |
else |
else |
107 |
HAVE_MPACK=t |
HAVE_MPACK=t |
108 |
|
echo "already exist" |
109 |
fi |
fi |
|
echo "OK" |
|
110 |
} |
} |
111 |
|
|
112 |
testoutput_for_prop() |
testoutput_var() |
113 |
{ |
{ |
114 |
# testoutput_for_prop dir s1 label subdir extension |
# testoutput_var dir s1 label subdir reference_output |
115 |
# |
# |
116 |
# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
117 |
# using search strings s1 and text label |
# with same output from reference file $dir/results/$reference_output |
118 |
|
# using search strings s1 and text label |
119 |
|
|
120 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
121 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
122 |
fi |
fi |
123 |
if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
124 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
125 |
lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
126 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntA -lt 2 ]; then |
127 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
128 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
129 |
fi |
fi |
130 |
return 99 |
return 99 |
131 |
fi |
fi |
132 |
else |
else |
133 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
134 |
return 99 |
return 99 |
135 |
fi |
fi |
136 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
137 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
echo testoutput_var: grep "$2" $1/results/$5 1>&2 |
138 |
fi |
fi |
139 |
grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
140 |
lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
141 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntB -lt 2 ]; then |
142 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
143 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
144 |
fi |
fi |
145 |
return 99 |
return 99 |
146 |
fi |
fi |
147 |
|
if [ $lncntA -ne $lncntB ]; then |
148 |
|
if [ $verbose -gt 0 ]; then |
149 |
|
echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
150 |
|
fi |
151 |
|
return 99 |
152 |
|
fi |
153 |
|
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
154 |
|
if [ $has_nan -gt 0 ] ; then |
155 |
|
echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
156 |
|
return 99 |
157 |
|
fi |
158 |
|
has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
159 |
|
if [ $has_inf -gt 0 ] ; then |
160 |
|
echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
161 |
|
return 99 |
162 |
|
fi |
163 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
164 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
165 |
fi |
fi |
166 |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
167 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
168 |
echo testoutput_for_prop: compare_lines 1>&2 |
echo testoutput_var: compare_lines 1>&2 |
169 |
fi |
fi |
170 |
if [ $verbose -gt 1 ]; then |
if [ $verbose -gt 1 ]; then |
171 |
cat tmp3.txt 1>&2 |
cat tmp3.txt 1>&2 |
173 |
echo "-1" >> tmp3.txt |
echo "-1" >> tmp3.txt |
174 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
175 |
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
176 |
digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
177 |
if [ $digits_of_similarity -eq 99 ]; then |
if [ $digits_of_similarity -eq 99 ]; then |
178 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
179 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
180 |
fi |
fi |
181 |
digits_of_similarity=99 |
digits_of_similarity=99 |
182 |
else |
else |
183 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
184 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
185 |
fi |
fi |
186 |
fi |
fi |
187 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
|
|
|
|
return $digits_of_similarity |
|
|
} |
|
|
|
|
|
dashnum() |
|
|
{ |
|
|
# dashnum n1 n2 n3 ... |
|
|
# |
|
|
# print numbers using %3i format or "--" if number = 99 |
|
|
|
|
|
for num in $@ ; do |
|
|
if [ $num = 99 ]; then |
|
|
printf ' --' |
|
|
else |
|
|
printf '%3i' $num |
|
|
fi |
|
|
done |
|
|
} |
|
|
|
|
|
testoutput_ad() |
|
|
{ |
|
|
grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt |
|
|
grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt |
|
|
grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt |
|
|
grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt |
|
|
join t05.txt t15.txt > t5.txt |
|
|
join t06.txt t16.txt > t6.txt |
|
|
echo "-1" >> t5.txt |
|
|
echo "-1" >> t6.txt |
|
|
digits_5=`./tmp_cmpnum < t5.txt` |
|
|
digits_6=`./tmp_cmpnum < t6.txt` |
|
|
dashnum $digits_5 $digits_6 |
|
|
rm -f t[01][56].txt t[56].txt |
|
|
} |
|
|
|
|
|
check_for_add_mon_output() |
|
|
{ |
|
|
# Check for additional types of monitor output |
|
|
if test "x$1" = x ; then |
|
|
return |
|
|
fi |
|
188 |
|
|
189 |
for ii in $PTRACERS_NUM ; do |
return $digits_of_similarity |
|
eval "HAVE_PTR0"$ii"=f" |
|
|
done |
|
|
|
|
|
ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
|
|
ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
|
|
for ii in $PTRACERS_NUM ; do |
|
|
for jj in $ptr_add ; do |
|
|
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
|
|
tst=`grep $name $1 | wc -l | awk '{print $1}'` |
|
|
if test ! "x$tst" = x0 ; then |
|
|
eval "HAVE_PTR0"$ii"=t" |
|
|
fi |
|
|
done |
|
|
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
|
|
done |
|
190 |
} |
} |
191 |
|
|
192 |
testoutput() |
testoutput_run() |
193 |
{ |
{ |
194 |
# testoutput directory subdir extension |
# testoutput_run directory subdir reference_output |
195 |
# |
# |
196 |
# test output in "directory" |
# test output from 1 run in "directory" |
197 |
if test "x$ADM" = x ; then |
# --> same processing for adjoint & forward test |
198 |
if [ $debug -gt 0 ]; then |
# default list of output variables to be checked: |
199 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
# 1rst : main variable used to decide if it pass or FAIL |
200 |
fi |
# others : number of matching digits to be printed in summary.txt |
201 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
listChk=$DEF_CHECK_LIST |
202 |
if [ $debug -gt 0 ]; then |
# load experiment-specific list from file "tr_checklist" (if it exist) |
203 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
204 |
fi |
sVar=`echo $listChk | awk '{print $1}'` |
205 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
# remove 1rst var and expand the list: + => min max mean s.d |
206 |
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
207 |
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
| sed 's/+//g' | sed "s/^$sVar//"` |
208 |
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
209 |
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
# check for ptracer output in reference_output file : |
210 |
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
outpref=$1/results/$3 |
211 |
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
212 |
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
|
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
|
|
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
|
|
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
|
|
|
|
|
# This is for PTRACERS |
|
213 |
for ii in $PTRACERS_NUM ; do |
for ii in $PTRACERS_NUM ; do |
214 |
eval `echo "p0"$ii"_min=99"` |
ptrfound=0 |
215 |
eval `echo "p0"$ii"_max=99"` |
for jj in $ptr_mon ; do |
216 |
eval `echo "p0"$ii"_mean=99"` |
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
217 |
eval `echo "p0"$ii"_sd=99"` |
tst=`grep $name $outpref | wc -l | awk '{print $1}'` |
218 |
tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
219 |
#echo 'tst = '$tst |
done |
220 |
if test "x$tst" = xt ; then |
if test $ptrfound = '1' ; then |
221 |
a="trcstat_ptracer0" |
eval "HAVE_PTR0"$ii"=t" |
222 |
testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
else |
223 |
RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
eval "HAVE_PTR0"$ii"=f" |
224 |
testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
if test "x$ADM" = x -a "x$OADM" = x; then |
225 |
RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
# remove this ptr from the list of output variable to check |
226 |
testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
227 |
RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
228 |
testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
fi |
|
RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
|
229 |
fi |
fi |
230 |
|
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
231 |
done |
done |
232 |
|
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
233 |
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
if test $tst != 1 ; then |
234 |
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
235 |
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
236 |
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
echo "==> WARNING: in checked list:" $listVar 1>&2 |
237 |
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
#- put it back once: |
238 |
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
239 |
allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
fi |
240 |
|
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
241 |
eval "dashnum $allargs" |
#- report to this experiment local summary file --- |
242 |
|
echo "MACH='$MACH'" > $locDIR"/summary.txt" |
243 |
else |
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
244 |
testoutput_ad $1 $2 "precision_grdchk_result" |
echo "DATE='$DATE'" >> $locDIR"/summary.txt" |
245 |
fi |
grep '(PID\.TID 0000\.0001) n.. =' $1/$2/$OUTPUTFILE \ |
246 |
|
| sed 's/(PID.TID 0000.0001) //' >> $locDIR"/summary.txt" |
247 |
|
echo "listVar='$listVar'" >> $locDIR"/summary.txt" |
248 |
|
#--- |
249 |
|
allargs="" |
250 |
|
for xx in $listVar |
251 |
|
do |
252 |
|
case $xx in |
253 |
|
'PS') if [ $debug -gt 0 ] |
254 |
|
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
255 |
|
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$? |
256 |
|
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
257 |
|
'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;; |
258 |
|
'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;; |
259 |
|
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;; |
260 |
|
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;; |
261 |
|
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;; |
262 |
|
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;; |
263 |
|
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;; |
264 |
|
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;; |
265 |
|
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;; |
266 |
|
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;; |
267 |
|
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;; |
268 |
|
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;; |
269 |
|
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;; |
270 |
|
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;; |
271 |
|
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;; |
272 |
|
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;; |
273 |
|
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;; |
274 |
|
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;; |
275 |
|
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
276 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;; |
277 |
|
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
278 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;; |
279 |
|
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
280 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;; |
281 |
|
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
282 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;; |
283 |
|
'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;; |
284 |
|
'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;; |
285 |
|
'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;; |
286 |
|
'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;; |
287 |
|
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;; |
288 |
|
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;; |
289 |
|
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;; |
290 |
|
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;; |
291 |
|
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;; |
292 |
|
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;; |
293 |
|
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;; |
294 |
|
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;; |
295 |
|
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;; |
296 |
|
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;; |
297 |
|
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;; |
298 |
|
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;; |
299 |
|
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;; |
300 |
|
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;; |
301 |
|
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
302 |
|
esac |
303 |
|
if test $xx = $sVar |
304 |
|
then allargs="$allargs > $yy <" |
305 |
|
else allargs="$allargs $yy" |
306 |
|
fi |
307 |
|
done |
308 |
|
|
309 |
|
nbVar=`echo $listVar | awk '{print NF}'` |
310 |
|
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
311 |
|
#-- fill line (up to standard length) with dot: |
312 |
|
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
313 |
|
echo $allargs $adNul |
314 |
|
else |
315 |
|
echo $allargs |
316 |
|
fi |
317 |
|
# <-- same processing for adjoint & forward test |
318 |
} |
} |
319 |
|
|
320 |
genmakemodel() |
genmakemodel() |
331 |
( |
( |
332 |
cd $1; |
cd $1; |
333 |
command="$GENMAKE2 -ds -m $MAKE" |
command="$GENMAKE2 -ds -m $MAKE" |
334 |
if test "x$ADM" = x ; then |
if test "x$MKDEPEND" != x ; then |
335 |
command="$command --mods=../code" |
command="$command -makedepend=$MKDEPEND" |
336 |
else |
fi |
337 |
|
if test "x$ADM" = xt ; then |
338 |
command="$command --mods=../code_ad" |
command="$command --mods=../code_ad" |
339 |
command="$command -adof=../../../tools/adjoint_options/adjoint_staf" |
elif test "x$OADM" = xt ; then |
340 |
|
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
341 |
|
else |
342 |
|
command="$command -mods=../code" |
343 |
fi |
fi |
344 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
345 |
command="$command --optfile=$OPTFILE" |
command="$command -optfile=$OPTFILE" |
346 |
fi |
fi |
347 |
if test "x$IEEE" != x ; then |
if test "x$IEEE" != x ; then |
348 |
command="$command -ieee" |
command="$command -ieee" |
349 |
fi |
fi |
350 |
printf 'genmake ... ' 1>&2 |
if test "x$GSL" = xt ; then |
351 |
$command > make.log 2>&1 |
command="$command -gsl" |
352 |
|
fi |
353 |
|
if test "x$MPI" != x0 ; then |
354 |
|
command="$command -mpi" |
355 |
|
fi |
356 |
|
if test "x$MULTI_THREAD" = xt ; then |
357 |
|
#- run multi-threaded using OpenMP: |
358 |
|
command="$command -omp" |
359 |
|
fi |
360 |
|
if test "x$USE_R4" = xt ; then |
361 |
|
command="$command -use_r4" |
362 |
|
fi |
363 |
|
if test "x$TS" = xt ; then |
364 |
|
command="$command -ts" |
365 |
|
fi |
366 |
|
if test "x$PAPIS" = xt ; then |
367 |
|
command="$command -papis" |
368 |
|
else |
369 |
|
if test "x$PCLS" = xt ; then |
370 |
|
command="$command -pcls" |
371 |
|
fi |
372 |
|
fi |
373 |
|
printf 'genmake ... ' |
374 |
|
eval $command > genmake.tr_log 2>&1 |
375 |
RETVAL=$? |
RETVAL=$? |
376 |
# Reduce the size of the testing emails! |
# Reduce the size of the testing emails! |
377 |
head -100 Makefile > $CDIR/Makefile_head |
head -100 Makefile > $CDIR/Makefile_head |
378 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
379 |
tail make.log |
tail genmake.tr_log |
380 |
echo "genmakemodel: genmake failed" 1>&2 |
echo "genmakemodel: genmake failed" |
381 |
cp genmake_* make.log $CDIR |
cp genmake.log genmake_* genmake.tr_log $CDIR |
382 |
return 1 |
return 1 |
383 |
else |
else |
384 |
echo "successful" 1>&2 |
echo "successful" |
385 |
fi |
fi |
386 |
) |
) |
387 |
fi |
fi |
390 |
makeclean() |
makeclean() |
391 |
{ |
{ |
392 |
# makeclean directory |
# makeclean directory |
393 |
|
if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi |
394 |
if test "x$NOCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
395 |
echo "make CLEAN skipped!" |
echo "make Clean skipped!" |
396 |
else |
else |
397 |
( |
( |
398 |
cd $1; |
cd $1; |
399 |
if test -e output.txt ; then |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
|
rm -f output.txt |
|
|
fi |
|
|
printf 'make CLEAN ... ' 2>&1 |
|
400 |
if test -r Makefile ; then |
if test -r Makefile ; then |
401 |
$MAKE CLEAN >> make.log 2>&1 |
printf 'clean build-dir: make Clean ... ' |
402 |
|
$MAKE Clean >> make.tr_log 2>&1 |
403 |
RETVAL=$? |
RETVAL=$? |
404 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
405 |
tail make.log |
tail make.tr_log |
406 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
echo "makeclean: \"make Clean\" failed" |
407 |
cp make.log $CDIR"/make.log" |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
408 |
return 1 |
return 1 |
409 |
fi |
fi |
410 |
|
echo successful |
411 |
|
else |
412 |
|
echo '' |
413 |
fi |
fi |
414 |
echo successful 1>&2 |
exit 0 |
415 |
|
) |
416 |
|
fi |
417 |
|
} |
418 |
|
|
419 |
|
run_clean() |
420 |
|
{ |
421 |
|
# run_clean directory |
422 |
|
if test "x$NOCLEAN" = xt ; then |
423 |
|
echo "run_clean skipped!" |
424 |
|
else |
425 |
|
( |
426 |
|
cd $1; |
427 |
|
printf 'clean run-dir ... ' |
428 |
|
# part of what is done after "make clean" when doing "make CLEAN" |
429 |
|
find . -name "*.meta" -exec rm {} \; |
430 |
|
find . -name "*.data" -exec rm {} \; |
431 |
|
find . -name "fort.*" -exec rm {} \; |
432 |
|
find . -type l -exec rm {} \; |
433 |
|
rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime |
434 |
|
rm -rf mnc_test_* |
435 |
|
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
436 |
|
echo successful |
437 |
exit 0 |
exit 0 |
438 |
) |
) |
439 |
fi |
fi |
447 |
else |
else |
448 |
( |
( |
449 |
cd $1; |
cd $1; |
450 |
printf 'make depend ... ' 1>&2 |
printf 'make depend ... ' |
451 |
$MAKE depend >> make.log 2>&1 |
$MAKE depend >> make.tr_log 2>&1 |
452 |
RETVAL=$? |
RETVAL=$? |
453 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
454 |
tail make.log |
tail make.tr_log |
455 |
echo "makedependmodel: make depend failed" 1>&2 |
echo "makedependmodel: make depend failed" |
456 |
cp make.log $CDIR"/make.log" |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
457 |
return 1 |
return 1 |
458 |
else |
else |
459 |
echo successful 1>&2 |
echo successful |
460 |
fi |
fi |
461 |
) |
) |
462 |
fi |
fi |
466 |
{ |
{ |
467 |
# makemodel directory |
# makemodel directory |
468 |
( |
( |
469 |
|
if test "x$NOMAKE" = xt ; then |
470 |
|
cd $1; |
471 |
|
if test -x $EXECUTABLE ; then |
472 |
|
echo "make skipped!" |
473 |
|
else |
474 |
|
echo "no executable!" |
475 |
|
return 2 |
476 |
|
fi |
477 |
|
else |
478 |
cd $1; |
cd $1; |
479 |
if test -r Makefile ; then |
if test -r Makefile ; then |
480 |
printf 'make ... ' 1>&2 |
printf 'make ... ' |
481 |
if test "x$ADM" = x ; then |
if test "x$ADM" = xt ; then |
482 |
|
$MAKE adall >> make.tr_log 2>&1 |
483 |
|
elif test "x$OADM" = xt ; then |
484 |
|
$MAKE adAll >> make.tr_log 2>&1 |
485 |
|
else |
486 |
if test "x$JOBS" = x ; then |
if test "x$JOBS" = x ; then |
487 |
$MAKE >> make.log 2>&1 |
$MAKE >> make.tr_log 2>&1 |
488 |
else |
else |
489 |
$MAKE -j $JOBS >> make.log 2>&1 |
$MAKE -j $JOBS >> make.tr_log 2>&1 |
490 |
fi |
fi |
|
else |
|
|
$MAKE adall >> make.log 2>&1 |
|
491 |
fi |
fi |
492 |
RETVAL=$? |
RETVAL=$? |
493 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
494 |
tail make.log |
tail make.tr_log |
495 |
echo failed 1>&2 |
echo failed |
496 |
cp make.log $CDIR"/make.log" |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
497 |
|
rm -f $EXECUTABLE |
498 |
return 1 |
return 1 |
499 |
else |
else |
500 |
echo successful 1>&2 |
echo successful |
501 |
fi |
fi |
502 |
fi |
fi |
503 |
|
fi |
504 |
) |
) |
505 |
} |
} |
506 |
|
|
507 |
|
mk_mpi_size() |
508 |
|
{ |
509 |
|
# mk_mpi_size input_file output_file proc_Nb |
510 |
|
# |
511 |
|
# make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file) |
512 |
|
# for an MPI build with no more than proc_Nb processors ; |
513 |
|
# return the effective number of processors. |
514 |
|
|
515 |
|
inp=$1 |
516 |
|
out=$2 |
517 |
|
np=$3 |
518 |
|
tmp=TTT.$$ |
519 |
|
|
520 |
|
px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'` |
521 |
|
py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'` |
522 |
|
sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'` |
523 |
|
sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'` |
524 |
|
|
525 |
|
#- find the largest divisor of input_file proc Nb, but not larger than $np |
526 |
|
pp=0 |
527 |
|
i=1 |
528 |
|
while [ $i -le $px ] ; do |
529 |
|
if [ `expr $px % $i` -eq 0 ] ; then |
530 |
|
j=1 |
531 |
|
while [ $j -le $py ] ; do |
532 |
|
if [ `expr $py % $j` -eq 0 ] ; then |
533 |
|
ij=`expr $i \* $j` |
534 |
|
if [ $ij -gt $pp ] ; then |
535 |
|
if [ $ij -le $np ] ; then |
536 |
|
ix=$i ; jy=$j ; pp=$ij |
537 |
|
#echo " ix,jy= $ix,$jy" |
538 |
|
fi |
539 |
|
fi |
540 |
|
fi |
541 |
|
j=`expr $j + 1` |
542 |
|
done |
543 |
|
fi |
544 |
|
i=`expr $i + 1` |
545 |
|
done |
546 |
|
|
547 |
|
#- create new SIZE.h type file: |
548 |
|
sx=`expr $sx \* $px / $ix` |
549 |
|
sy=`expr $sy \* $py / $jy` |
550 |
|
if [ $verbose -gt 1 ]; then |
551 |
|
echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy" |
552 |
|
fi |
553 |
|
sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp |
554 |
|
sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out |
555 |
|
sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp |
556 |
|
sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out |
557 |
|
rm -f $tmp |
558 |
|
return $pp |
559 |
|
} |
560 |
|
|
561 |
symlink_mpifiles() |
symlink_mpifiles() |
562 |
{ |
{ |
563 |
# Put special links so that MPI specific files are used |
# Put special links so that MPI specific files are used |
566 |
|
|
567 |
dir=$1 |
dir=$1 |
568 |
code_dir=$2 |
code_dir=$2 |
569 |
BUILD_DIR=$dir/$3 |
build_dir=$dir/$3 |
570 |
CODE_DIR=$dir/$code_dir |
|
|
|
|
571 |
# These are files that should replace their counter-part when using -mpi |
# These are files that should replace their counter-part when using -mpi |
572 |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)` |
573 |
|
|
574 |
# Is this an MPI run? |
for ii in $MPI_FILES ; do |
575 |
if test "x$MPI" = xt ; then |
i=`echo $ii | sed 's:^\./::'` |
576 |
# YES: We symbolically link these files to the build |
name=`echo $i | sed 's:_mpi::'` |
577 |
# dir so long as there is no real file in place |
file="../$code_dir/$i" |
578 |
for ii in $MPI_FILES ; do |
if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi |
579 |
i=`echo $ii | sed 's:^\./::'` |
|
580 |
name=`echo $i | sed 's:_mpi::' ` |
# Is this an MPI run? |
581 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
if test "x$MPI" = x0 ; then |
582 |
RETVAL=$? |
# NO: We undo any _mpi symbolically linked files |
583 |
if test "x$RETVAL" != x0 ; then |
if test -L $build_dir/$name ; then |
584 |
if ! test -f $BUILD_DIR/$i ; then |
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
|
#echo Linking $name to $i |
|
|
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
|
|
fi |
|
|
fi |
|
|
done |
|
|
else |
|
|
# NO: We undo any _mpi symbolically linked files |
|
|
for ii in $MPI_FILES ; do |
|
|
i=`echo $ii | sed 's:^\./::'` |
|
|
name=`echo $i | sed 's:_mpi::' ` |
|
|
if test -L $BUILD_DIR/$name ; then |
|
|
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
|
585 |
RETVAL=$? |
RETVAL=$? |
586 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" = x0 ; then |
587 |
#echo Un-linking $name from $linktarg |
if [ $verbose -gt 1 ]; then |
588 |
rm -f $BUILD_DIR/$name |
echo " Un-linking $name from ../$code_dir" ; fi |
589 |
|
rm -f $build_dir/$name |
590 |
fi |
fi |
591 |
fi |
fi |
592 |
done |
else |
593 |
fi |
# YES: We symbolically link these files to the build |
594 |
|
# dir so long as there is no real file in place |
595 |
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
596 |
|
RETVAL=$? |
597 |
|
if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi |
598 |
|
if test "x$RETVAL" != x0 ; then |
599 |
|
if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi |
600 |
|
if test ! -r $build_dir/$name ; then |
601 |
|
if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi |
602 |
|
(cd $build_dir; ln -sf $file $name) |
603 |
|
fi |
604 |
|
fi |
605 |
|
fi |
606 |
|
done |
607 |
} |
} |
608 |
|
|
609 |
linkdata() |
linkdata() |
610 |
{ |
{ |
611 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
612 |
# |
# |
613 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
614 |
if test "x$1" = x1 ; then |
if test -d $1 ; then |
615 |
( |
( |
616 |
cd $2 |
cd $1 ; shift |
617 |
if test "x$ADM" = x ; then |
echo 'linkdata from dirs:' $* |
618 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')` |
619 |
for i in $files ; do |
for xx in $inpMPI ; do |
620 |
if test ! -d "../input/"$i ; then |
if test -r "../"$1"/"$xx ; then |
621 |
ln -sf "../input/"$i $i |
# found 1 _mpi sfx file in 1rst input dir and it is readable |
622 |
fi |
yy=`echo $xx | sed 's:\.mpi$::'` |
623 |
done |
if test "x$MPI" = "x0" ; then |
624 |
else |
# not mpi test: remove symbolic link |
625 |
files=`( cd ../input ; ls -1 *.bin | grep -v CVS )` |
if test -h $yy ; then rm -f $yy ; fi |
626 |
for i in $files ; do |
else |
627 |
if test ! -d "../input/"$i ; then |
# mpi test: remove symbolic link & link .mpi sfx file |
628 |
ln -sf "../input/"$i $i |
if test -h $yy ; then rm -f $yy ; fi |
629 |
|
if test ! -r $yy ; then |
630 |
|
ln -sf "../"$1"/"$xx $yy ; |
631 |
|
printf " $xx" 1>&2 |
632 |
fi |
fi |
633 |
done |
fi |
634 |
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
fi |
635 |
for i in $files ; do |
done |
636 |
if test ! -d "../input_ad/"$i ; then |
if test -r "../"$1"/eedata.mth" ; then |
637 |
ln -sf "../input_ad/"$i $i |
# found eedata.mth in 1rst input dir and it is readable |
638 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
639 |
|
# multi-threaded test: remove symbolic link & link eedata.mth |
640 |
|
if test -h eedata ; then rm -f eedata ; fi |
641 |
|
if test ! -r eedata ; then |
642 |
|
ln -sf "../"$1"/eedata.mth" eedata ; |
643 |
|
printf ' eedata.mth' 1>&2 |
644 |
fi |
fi |
645 |
done |
else |
646 |
|
# not multi-threaded test: remove eedata symbolic link |
647 |
|
if test -h eedata ; then rm -f eedata ; fi |
648 |
|
fi |
649 |
fi |
fi |
650 |
|
prevDir='NONE' |
651 |
|
for ldir in $* ; do |
652 |
|
if test -d "../"$ldir -a $ldir != $prevDir ; then |
653 |
|
printf " ldir=${ldir}:" 1>&2 |
654 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
655 |
|
for i in $files ; do |
656 |
|
if test ! -d "../"$ldir/$i ; then |
657 |
|
if test ! -r $i ; then |
658 |
|
printf ' '$i 1>&2 |
659 |
|
ln -sf "../"$ldir"/"$i $i |
660 |
|
fi |
661 |
|
fi |
662 |
|
done |
663 |
|
printf ' ;' 1>&2 |
664 |
|
if test -x "../"$ldir"/"prepare_run ; then |
665 |
|
"../"$ldir"/"prepare_run 1>&2 |
666 |
|
else |
667 |
|
echo '' 1>&2 |
668 |
|
fi |
669 |
|
fi |
670 |
|
prevDir=$ldir |
671 |
|
done |
672 |
) |
) |
673 |
fi |
fi |
674 |
} |
} |
677 |
{ |
{ |
678 |
# runmodel directory |
# runmodel directory |
679 |
# |
# |
680 |
# runs "$COMMAND in "directory" |
# runs $COMMAND in "directory" |
681 |
# (where "$COMMAND" is relative to "directory") |
# (where "$COMMAND" is relative to "directory") |
682 |
( |
( |
683 |
cd $1 |
cd $1 |
684 |
printf 'runmodel ... ' 1>&2 |
printf 'runmodel in %s ... ' $1 |
685 |
# make output.txt |
if test -L $EXECUTABLE ; then |
686 |
echo |
if test -x "../"$builddir"/"$EXECUTABLE ; then |
687 |
rm -f run.log |
cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
688 |
# echo "COMMAND='$COMMAND'" |
outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi |
689 |
# echo "pwd='"`pwd`"'" |
else rm -f $EXECUTABLE |
690 |
( eval $COMMAND ) > run.log 2>&1 |
fi |
691 |
RETVAL=$? |
fi |
692 |
if test "x$RETVAL" = x0 ; then |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
693 |
tail run.log |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
694 |
echo successful 1>&2 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
695 |
|
fi |
696 |
|
if test "x$MPI" != x0 ; then |
697 |
|
#- adjust the MPI run command with the right number of Procs |
698 |
|
#echo '' ; echo " COMMAND='$COMMAND'" |
699 |
|
COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"` |
700 |
|
if test "x$MPI_MFILE" != x ; then |
701 |
|
COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"` |
702 |
|
fi |
703 |
|
#echo " COMMAND='$COMMAND'" |
704 |
|
fi |
705 |
|
if test ! -x $EXECUTABLE ; then |
706 |
|
rm -f $RUNLOG ; touch $RUNLOG |
707 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
708 |
|
echo " no executable:" $EXECUTABLE >> $RUNLOG |
709 |
|
RETVAL=8 |
710 |
|
ENDVAL=-1 |
711 |
|
else |
712 |
|
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
713 |
|
# output do not exist or is older than executable: |
714 |
|
rm -f $RUNLOG ; touch $RUNLOG |
715 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
716 |
|
( eval $COMMAND ) >> $RUNLOG 2>&1 |
717 |
|
RETVAL=$? |
718 |
|
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
719 |
|
if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then |
720 |
|
find . -name "*.meta" -exec rm {} \; |
721 |
|
find . -name "*.data" -exec rm {} \; |
722 |
|
rm -rf mnc_test_* |
723 |
|
fi |
724 |
|
else |
725 |
|
RETVAL=0 |
726 |
|
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
727 |
|
touch $RUNLOG |
728 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
729 |
|
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
730 |
|
fi |
731 |
|
fi |
732 |
|
rm -f run.log_tmp |
733 |
|
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
734 |
|
echo successful |
735 |
|
printf '=> output from running in %s :\n' $1 1>&2 |
736 |
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
737 |
# === Reduce the size of the testing emails! |
# === Reduce the size of the testing emails! |
738 |
# if test "x$ADM" = x ; then |
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
|
# cp output.txt $CDIR"/output.txt" |
|
|
# else |
|
|
# cp output.txt_adm $CDIR"/output.txt_adm" |
|
|
# fi |
|
739 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
740 |
return 0 |
return 0 |
741 |
|
elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then |
742 |
|
#-- for some weird cases (run is finihed but with error code) |
743 |
|
echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')' |
744 |
|
printf '=> output from running in %s :\n' $1 1>&2 |
745 |
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
746 |
|
return 0 |
747 |
else |
else |
748 |
tail run.log |
echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')' |
749 |
echo failed 1>&2 |
printf '=> output from running in %s :\n' $1 1>&2 |
750 |
cp run.log $CDIR"/run.log" |
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
751 |
|
cp $RUNLOG $CDIR"/"$RUNLOG |
752 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
753 |
return 1 |
return 1 |
754 |
fi |
fi |
759 |
{ |
{ |
760 |
# create codelet for comparing model output |
# create codelet for comparing model output |
761 |
|
|
762 |
printf "creating the comparison code... " |
printf "creating the comparison code (using CC=$CC)... " |
763 |
cat > tmp_cmpnum.c <<EOF |
cat > tr_cmpnum.c <<EOF |
764 |
#include <stdio.h> |
#include <stdio.h> |
765 |
#include <math.h> |
#include <math.h> |
766 |
int main( int argc, char** argv ) { |
int main( int argc, char** argv ) { |
767 |
int linnum,best,lncnt; |
int linnum,cmplin,best,lncnt; |
768 |
double a,b,abave,relerr; |
double a,b,abave,relerr; |
769 |
best = -16; |
best = -22; |
770 |
lncnt = 0; |
lncnt = 0; |
771 |
while( 1 & (lncnt+=1) < 999 ) { |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
772 |
scanf("%d", &linnum); |
scanf("%d", &linnum); |
773 |
if (linnum == -1) break; |
if (linnum == -1) break; |
774 |
scanf("%lf", &a); scanf("%lf", &b); |
scanf("%lf", &a); scanf("%lf", &b); |
775 |
abave = 0.5*(fabs(a)+fabs(b)); |
abave = 0.5*(fabs(a)+fabs(b)); |
776 |
if (abave > 0.0) { |
if ( abave == abave ) { |
777 |
relerr=fabs(a-b)/abave; |
if (abave > 0.0) { |
778 |
if (relerr > 0.0) { |
relerr=fabs(a-b)/abave; |
779 |
linnum = (int)log10(relerr); |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
780 |
best = (best > linnum) ? best : linnum; |
else { cmplin = -16 ; } |
781 |
|
best = (best > cmplin) ? best : cmplin; } |
782 |
|
else { cmplin = -22 ; } |
783 |
|
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
784 |
} |
} |
785 |
} |
else { |
786 |
else { |
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
787 |
if (best == -16) best = -22; |
break; } |
|
} |
|
788 |
} |
} |
789 |
if (lncnt == 999) best=-29; |
if (lncnt == 999) best=-29; |
790 |
|
if (linnum != -1) best=-99; |
791 |
printf("%d\n", -best); |
printf("%d\n", -best); |
792 |
return 0; |
return 0; |
793 |
} |
} |
794 |
EOF |
EOF |
795 |
cc -o tmp_cmpnum tmp_cmpnum.c -lm |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
796 |
|
|
797 |
if [ -x ./tmp_cmpnum ]; then |
if [ -x ./tr_cmpnum ]; then |
798 |
echo "OK" |
echo "OK" |
799 |
return 0 |
return 0 |
800 |
else |
else |
801 |
echo |
echo |
802 |
echo "ERROR: failed to compile comparison code" |
echo "ERROR: failed to compile comparison code -- please specify" |
803 |
|
echo " a C compiler using the CC environment variable." |
804 |
exit 1 |
exit 1 |
805 |
fi |
fi |
806 |
} |
} |
812 |
nm=$1 |
nm=$1 |
813 |
printf '%s %s %s %s' $2 $3 $4 $5 |
printf '%s %s %s %s' $2 $3 $4 $5 |
814 |
shift; shift; shift; shift; shift; |
shift; shift; shift; shift; shift; |
815 |
printf '%3s' $@ |
listPrt=$@ |
816 |
|
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
817 |
if [ $1 = '--' ]; then |
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
818 |
|
printf '%3s' $listPrt |
819 |
|
# line below does not work on hp-ux_ia64 : do those substitutions later on |
820 |
|
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
821 |
|
|
822 |
|
if [ $xx = '..' ]; then |
823 |
|
printf ' N/O ' |
824 |
|
elif [ $xx = '--' ]; then |
825 |
|
printf ' N/O ' |
826 |
|
elif [ $xx = 99 ]; then |
827 |
printf ' N/O ' |
printf ' N/O ' |
828 |
else |
else |
829 |
if [ $1 -gt 12 ]; then |
if [ $xx -ge $MATCH_CRIT ]; then |
830 |
printf ' pass' |
printf ' pass' |
831 |
else |
else |
832 |
printf ' FAIL' |
printf ' FAIL' |
834 |
fi |
fi |
835 |
printf ' %s' $nm |
printf ' %s' $nm |
836 |
printf '\n' |
printf '\n' |
|
|
|
|
} |
|
837 |
|
|
|
show_help() |
|
|
{ |
|
|
cat - << EOF |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
|
|
|
|
|
-help|-h Show this help message |
|
|
-quiet Reduce the amount of output |
|
|
-verbose Produce copious amounts of output |
|
|
-debug Produce even more output which will mean nothing to most |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
|
|
-clean Do "make CLEAN" after compiling and testing. |
|
|
-cleanup Aggresively removes all model output, executables and object files |
|
|
and then exits. Use with care. |
|
|
|
|
|
Normal usage: |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
|
|
EOF |
|
838 |
} |
} |
839 |
|
|
840 |
scandirs() |
scandirs() |
841 |
{ |
{ |
842 |
if [ $# -eq 0 ]; then |
if [ $# -eq 1 ]; then |
843 |
for arg in * ; do |
for arg in * ; do |
844 |
test -d $arg/input && echo $arg |
test -f $arg/$1 && echo $arg |
845 |
done |
done |
846 |
else |
else |
847 |
echo $* |
echo $* |
848 |
fi |
fi |
849 |
} |
} |
850 |
|
|
851 |
|
|
852 |
|
check_eedata() |
853 |
|
{ |
854 |
|
# check_eedata size.h eedata |
855 |
|
if [ $# -eq 2 ] ; then |
856 |
|
if test -f $1 -a -f $2 ; then |
857 |
|
sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'` |
858 |
|
nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
859 |
|
if test "x$nx" = x ; then |
860 |
|
rx=10 |
861 |
|
else |
862 |
|
rx=`expr $sx % $nx` |
863 |
|
fi |
864 |
|
sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'` |
865 |
|
ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
866 |
|
if test "x$ny" = x ; then |
867 |
|
ry=20 |
868 |
|
else |
869 |
|
ry=`expr $sy % $ny` |
870 |
|
fi |
871 |
|
echo `expr $rx + $ry` |
872 |
|
else |
873 |
|
echo '-1' |
874 |
|
fi |
875 |
|
else |
876 |
|
echo '-2' |
877 |
|
fi |
878 |
|
|
879 |
|
} |
880 |
|
|
881 |
############################################################################### |
############################################################################### |
882 |
|
|
883 |
|
|
884 |
# Default properties |
# Default properties |
885 |
debug=0 |
debug=0 |
886 |
verbose=1 |
verbose=1 |
|
clean=0 |
|
|
expts='' |
|
|
# ieee=1 |
|
887 |
|
|
888 |
IEEE=true |
IEEE=true |
889 |
if test "x$MITGCM_IEEE" != x ; then |
if test "x$MITGCM_IEEE" != x ; then |
890 |
IEEE=$MITGCM_IEEE |
IEEE=$MITGCM_IEEE |
891 |
fi |
fi |
892 |
|
GSL=f |
893 |
|
|
894 |
CLEANUP=f |
CLEANUP=f |
895 |
|
NORUN=f |
896 |
QUICK=f |
QUICK=f |
897 |
|
NOMAKE=f |
898 |
NOGENMAKE=f |
NOGENMAKE=f |
899 |
NOCLEAN=f |
NOCLEAN=f |
900 |
NODEPEND=f |
NODEPEND=f |
901 |
|
POSTCLEAN=0 |
902 |
|
|
903 |
BASH= |
BASH= |
904 |
OPTFILE=NONE |
OPTFILE=NONE |
905 |
ADDRESSES= |
ADDRESSES= |
906 |
TESTDIRS= |
TESTDIRS= |
907 |
|
SKIPDIRS= |
908 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
909 |
HAVE_MPACK= |
HAVE_MPACK= |
910 |
MPACK="$MPACKDIR/mpack" |
MPACK= |
911 |
COMMAND= |
COMMAND= |
912 |
MAKE=make |
MKDEPEND= |
913 |
|
if test "x$MAKE" = x ; then |
914 |
|
MAKE=make |
915 |
|
fi |
916 |
|
if test "x$CC" = x ; then |
917 |
|
CC=cc |
918 |
|
fi |
919 |
JOBS= |
JOBS= |
920 |
MPI=f |
MPI=0 |
921 |
|
MPI_MFILE= |
922 |
|
MULTI_THREAD=f |
923 |
|
OUTDIR= |
924 |
DELDIR= |
DELDIR= |
925 |
|
USE_R4= |
926 |
|
|
927 |
ADM= |
ADM= |
928 |
|
OADM= |
929 |
|
|
930 |
# Additional monitor types |
# list of pTracers to check for monitor output |
931 |
PTRACERS_NUM="1 2 3 4 5" |
PTRACERS_NUM="1 2 3 4 5" |
932 |
|
|
933 |
|
MATCH_CRIT=10 |
934 |
|
|
935 |
printf "parsing options... " |
printf "parsing options... " |
936 |
|
|
937 |
ac_prev= |
ac_prev= |
945 |
fi |
fi |
946 |
|
|
947 |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
948 |
|
|
949 |
case $ac_option in |
case $ac_option in |
950 |
|
|
951 |
-help | --help | -h | --h) |
-help | --help | -h | --h) usage ;; |
952 |
usage ;; |
|
953 |
|
-optfile | --optfile | -of | --of) ac_prev=OPTFILE ;; |
954 |
-optfile | --optfile | -of | --of) |
-optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;; |
955 |
ac_prev=OPTFILE ;; |
|
956 |
-optfile=* | --optfile=* | -of=* | --of=*) |
-addr | --addr | -a | --a) ac_prev=ADDRESSES ;; |
957 |
OPTFILE=$ac_optarg ;; |
-addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;; |
958 |
|
-mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;; |
959 |
-addr | --addr | -a | --a) |
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;; |
960 |
ac_prev=ADDRESSES ;; |
|
961 |
-addr=* | --addr=*) |
-tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;; |
962 |
ADDRESSES=$ac_optarg ;; |
-tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;; |
963 |
|
-skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;; |
964 |
-tdir | --tdir | -t | --t) |
-skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;; |
965 |
ac_prev=TESTDIRS ;; |
|
966 |
-tdir=* | --tdir=*) |
-bash | --bash | -b | --b) ac_prev=BASH ;; |
967 |
TESTDIRS=$ac_optarg ;; |
-bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;; |
968 |
|
|
969 |
-bash | --bash | -b | --b) |
-command | --command | -c | --c) ac_prev=COMMAND ;; |
970 |
ac_prev=BASH ;; |
-command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;; |
971 |
-bash=* | --bash=*) |
|
972 |
BASH=$ac_optarg ;; |
-makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;; |
973 |
|
-makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;; |
974 |
-command | --command | -c | --c) |
|
975 |
ac_prev=COMMAND ;; |
-make | --make | -m | --m) ac_prev=MAKE ;; |
976 |
-command=* | --command=*) |
-make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;; |
977 |
COMMAND=$ac_optarg ;; |
|
978 |
|
-odir | --odir) ac_prev=OUTDIR ;; |
979 |
-make | --make | -m | --m) |
-odir=* | --odir=*) OUTDIR=$ac_optarg ;; |
|
ac_prev=MAKE ;; |
|
|
-make=* | --make=*) |
|
|
MAKE=$ac_optarg ;; |
|
|
|
|
|
-ptracers | --ptracers | -ptr | --ptr) |
|
|
ac_prev=PTRACERS_NUM ;; |
|
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
|
|
PTRACERS_NUM=$ac_optarg ;; |
|
|
|
|
|
-j) ac_prev=JOBS ;; |
|
|
-j=*) JOBS=$ac_optarg ;; |
|
|
|
|
|
-clean | --clean) |
|
|
CLEANUP=t ;; |
|
|
|
|
|
-quick | --quick | -q | --q) |
|
|
QUICK=t ;; |
|
|
-nogenmake | --nogenmake | -ng | --ng) |
|
|
NOGENMAKE=t ;; |
|
|
-noclean | --noclean | -nc | --nc) |
|
|
NOCLEAN=t ;; |
|
|
-nodepend | --nodepend | -nd | --nd) |
|
|
NODEPEND=t ;; |
|
980 |
|
|
981 |
-mpi) MPI=t ;; |
-ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;; |
982 |
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;; |
983 |
|
|
984 |
|
-match | --match ) ac_prev=MATCH_CRIT ;; |
985 |
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
986 |
|
|
987 |
|
-j | --j) ac_prev=JOBS ;; |
988 |
|
-j=* | --j=*) JOBS=$ac_optarg ;; |
989 |
|
|
990 |
|
-clean | --clean) CLEANUP=t ; DELDIR=t ;; |
991 |
|
|
992 |
|
-norun | --norun | -nr | --nr) NORUN=t ;; |
993 |
|
-runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;; |
994 |
|
-quick | --quick | -q | --q) QUICK=t ;; |
995 |
|
-nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;; |
996 |
|
-noclean | --noclean | -nc | --nc) NOCLEAN=t ;; |
997 |
|
-nodepend | --nodepend | -nd | --nd) NODEPEND=t ;; |
998 |
|
|
999 |
|
-postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;; |
1000 |
|
-deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;; |
1001 |
|
|
1002 |
|
-mpi | --mpi) MPI=2 ;; |
1003 |
|
-MPI | --MPI) ac_prev=MPI ;; |
1004 |
|
-MPI=* | --MPI=*) MPI=$ac_optarg ;; |
1005 |
|
|
1006 |
|
-mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;; |
1007 |
|
-mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;; |
1008 |
|
|
1009 |
|
-mth) MULTI_THREAD=t ;; |
1010 |
|
|
1011 |
-adm | -ad) ADM=t ;; |
-adm | -ad) ADM=t ;; |
1012 |
|
-oad) OADM=t; NODEPEND=t ;; |
1013 |
|
|
1014 |
-ieee) IEEE=true ;; |
-ieee) IEEE=true ;; |
1015 |
-noieee) IEEE= ;; |
-noieee) IEEE= ;; |
1016 |
|
-gsl) GSL=t ;; |
1017 |
|
|
1018 |
-verbose) verbose=2 ;; |
-verbose) verbose=2 ;; |
1019 |
-debug) debug=1 ;; |
-debug) debug=1 ;; |
1021 |
|
|
1022 |
-deldir | -dd) DELDIR=t ;; |
-deldir | -dd) DELDIR=t ;; |
1023 |
|
|
1024 |
-*) |
-use_r4|-ur4) USE_R4=t ;; |
1025 |
echo "Error: unrecognized option: "$ac_option |
|
1026 |
usage |
-ts) TS=t;; |
1027 |
;; |
-papis) PAPIS=t;; |
1028 |
|
-pcls) PCL=t;; |
1029 |
*) |
|
1030 |
echo "Error: unrecognized argument: "$ac_option |
-*) echo "Error: unrecognized option: "$ac_option |
1031 |
usage |
usage ;; |
1032 |
;; |
*) echo "Error: unrecognized argument: "$ac_option |
1033 |
|
usage ;; |
1034 |
|
|
1035 |
esac |
esac |
1036 |
|
|
1037 |
done |
done |
1038 |
|
|
1039 |
if test "x$QUICK" = xt ; then |
if test "x$QUICK" = xt ; then |
1042 |
NODEPEND=t |
NODEPEND=t |
1043 |
fi |
fi |
1044 |
|
|
1045 |
|
#- check length of MPI machine file: |
1046 |
|
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then |
1047 |
|
if test -r $MPI_MFILE ; then |
1048 |
|
nl=`wc -l $MPI_MFILE | awk '{print $1}'` |
1049 |
|
if [ $nl -lt $MPI ] ; then |
1050 |
|
echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE" |
1051 |
|
usage |
1052 |
|
fi |
1053 |
|
if [ $verbose -gt 1 ]; then |
1054 |
|
echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run" |
1055 |
|
fi |
1056 |
|
else |
1057 |
|
echo "Error: cannot access MPI_MFILE=$MPI_FILE" |
1058 |
|
usage |
1059 |
|
fi |
1060 |
|
fi |
1061 |
|
|
1062 |
|
#- setting for forward or ADM testing |
1063 |
|
if test "x$ADM" = xt ; then |
1064 |
|
code_dir=code_ad |
1065 |
|
inputdir=input_ad |
1066 |
|
ref_outp="output_adm.txt" |
1067 |
|
EXECUTABLE="mitgcmuv_ad" |
1068 |
|
elif test "x$OADM" = xt ; then |
1069 |
|
code_dir=code_oad |
1070 |
|
inputdir=input_oad |
1071 |
|
ref_outp="output_oadm.txt" |
1072 |
|
EXECUTABLE="mitgcmuv_ad" |
1073 |
|
else |
1074 |
|
code_dir=code |
1075 |
|
inputdir=input |
1076 |
|
ref_outp="output.txt" |
1077 |
|
EXECUTABLE="mitgcmuv" |
1078 |
|
fi |
1079 |
|
|
1080 |
|
xx=`echo $TESTDIRS | awk '{print $1}'` |
1081 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
1082 |
TESTDIRS=`scandirs` |
LIST=`scandirs results/$ref_outp` |
1083 |
|
elif test $xx = 'start_from' ; then |
1084 |
|
xx=`echo $TESTDIRS | awk '{print $2}'` |
1085 |
|
LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"` |
1086 |
|
else |
1087 |
|
#- expand group of experiments: |
1088 |
|
LIST=" " |
1089 |
|
for xx in $TESTDIRS |
1090 |
|
do |
1091 |
|
case $xx in |
1092 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
1093 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
1094 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
1095 |
|
;; |
1096 |
|
'tutorials') |
1097 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
1098 |
|
*) LIST=${LIST}" "$xx ;; |
1099 |
|
esac |
1100 |
|
done |
1101 |
fi |
fi |
1102 |
|
#echo 'LIST='${LIST}'<' |
1103 |
|
#- skip dirs, remove duplicate and non-directory: |
1104 |
|
TESTDIRS=" " |
1105 |
|
count=0 |
1106 |
|
for xx in $LIST |
1107 |
|
do |
1108 |
|
yy=`echo $SKIPDIRS | grep -c $xx` |
1109 |
|
if test $yy = 0 ; then |
1110 |
|
if test -d $xx ; then |
1111 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
1112 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
1113 |
|
else count=1 ; |
1114 |
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
1115 |
|
fi |
1116 |
|
else |
1117 |
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
1118 |
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
1119 |
|
fi |
1120 |
|
fi |
1121 |
|
done |
1122 |
|
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
1123 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
1124 |
|
|
1125 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
1126 |
OPTFILE=$MITGCM_OF |
OPTFILE=$MITGCM_OF |
1127 |
fi |
fi |
1128 |
|
|
1129 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
LOC_MFILE='tr_mpi_mfile' |
1130 |
COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1" |
RUNLOG="run.tr_log" |
1131 |
fi |
OUTPUTFILE=$ref_outp |
|
|
|
1132 |
if test "x$COMMAND" = x ; then |
if test "x$COMMAND" = x ; then |
1133 |
COMMAND="$MAKE output.txt" |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
1134 |
fi |
fi |
1135 |
|
if test "x$MPI" != x0 ; then |
1136 |
|
OUTPUTFILE="STDOUT.0000" |
1137 |
|
fi |
1138 |
|
|
1139 |
|
echo "OK (COMMAND= $COMMAND )" |
1140 |
|
|
1141 |
echo "OK" |
# set the Default List of output variables to be checked: |
1142 |
|
# (use default or load experiment-specific list from file "tr_checklist") |
1143 |
|
# content : 1rst = main variable used to decide if it pass or FAIL |
1144 |
|
# others = number of matching digits to be printed in summary.txt |
1145 |
|
if test "x$ADM" = x -a "x$OADM" = x; then |
1146 |
|
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
1147 |
|
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
1148 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1149 |
|
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
1150 |
|
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
1151 |
|
else |
1152 |
|
DEF_CHECK_LIST='Grad Cost Grad' |
1153 |
|
EMPTY_RESULTS='.. ..' |
1154 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1155 |
|
fi |
1156 |
|
|
1157 |
# create the FORTRAN comparison code |
# create the FORTRAN comparison code |
1158 |
createcodelet |
if test -x tr_cmpnum ; then |
1159 |
|
echo "skipping comparison code build" |
1160 |
|
else |
1161 |
|
createcodelet |
1162 |
|
fi |
1163 |
|
|
1164 |
# build the mpack utility |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1165 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
if test "x$ADDRESSES" = x ; then |
1166 |
echo "skipping mpack build" |
echo "skipping mpack build" |
1167 |
else |
else |
1168 |
build_mpack |
build_mpack |
1169 |
fi |
fi |
1170 |
|
|
1171 |
# Create a uniquely named directory to store results |
# Create a uniquely named directory to store results |
1172 |
|
CMDLINE=$0 |
1173 |
|
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1174 |
|
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
1175 |
|
else CMDLINE="$CMDLINE '$xx'" ; fi |
1176 |
|
done |
1177 |
|
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
1178 |
MACH=`hostname` |
MACH=`hostname` |
1179 |
UNAMEA=`uname -a` |
UNAMEA=`uname -a` |
1180 |
DATE=`date +%Y%m%d` |
DATE=`date +%Y%m%d` |
1181 |
BASE="tr_"$MACH"_"$DATE"_" |
BASE="tr_"$MACH"_"$DATE"_" |
1182 |
|
if test "x$OUTDIR" != x ; then |
1183 |
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
1184 |
|
else |
1185 |
|
short_name=`hostname | sed 's/\..*$//'` |
1186 |
|
BASE="tr_"$short_name"_"$DATE"_" |
1187 |
|
fi |
1188 |
DNUM=0 |
DNUM=0 |
1189 |
DRESULTS="$BASE$DNUM" |
DRESULTS="$BASE$DNUM" |
1190 |
while test -e $DRESULTS ; do |
while test -e $DRESULTS ; do |
1198 |
exit 1 |
exit 1 |
1199 |
fi |
fi |
1200 |
SUMMARY="$DRESULTS/summary.txt" |
SUMMARY="$DRESULTS/summary.txt" |
|
printf "Start time: " >> $SUMMARY |
|
1201 |
start_date=`date` |
start_date=`date` |
1202 |
echo $start_date > $SUMMARY |
echo $start_date > $SUMMARY |
1203 |
|
echo 'run:' $CMDLINE >> $SUMMARY |
1204 |
|
echo 'on :' $UNAMEA >> $SUMMARY |
1205 |
|
|
1206 |
of_path= |
of_path= |
1207 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
1225 |
fi |
fi |
1226 |
else |
else |
1227 |
echo >> $SUMMARY |
echo >> $SUMMARY |
1228 |
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY |
1229 |
echo " so the genmake default will be used." >> $SUMMARY |
#-note: to be filled later after 1rst run |
1230 |
fi |
fi |
1231 |
echo |
echo |
1232 |
echo >> $SUMMARY |
echo >> $SUMMARY |
1233 |
if test "x$ADM" = x ; then |
if test "x$ADM" = x -a "x$OADM" = x; then |
1234 |
line_0=" ----T----- ----S----- ----U----- ----V-----" |
if [ $MATCH_CRIT -lt 10 ] ; |
1235 |
|
then line_0="default "$MATCH_CRIT ; |
1236 |
|
else line_0="default "$MATCH_CRIT ; fi |
1237 |
|
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1238 |
line_1="G D M c m s m s m s m s" |
line_1="G D M c m s m s m s m s" |
1239 |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1240 |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1241 |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1242 |
for ii in $PTRACERS_NUM ; do |
for ii in $PTRACERS_NUM ; do |
|
# tst=`eval 'echo $HAVE_PTR0'$ii` |
|
|
# if test "x$tst" = xt ; then |
|
1243 |
line_0="$line_0 --PTR 0"$ii"--" |
line_0="$line_0 --PTR 0"$ii"--" |
1244 |
line_1="$line_1 m s" |
line_1="$line_1 m s" |
1245 |
line_2="$line_2 m m e ." |
line_2="$line_2 m m e ." |
1246 |
line_3="$line_3 i a a d" |
line_3="$line_3 i a a d" |
1247 |
line_4="$line_4 n x n ." |
line_4="$line_4 n x n ." |
|
# fi |
|
1248 |
done |
done |
1249 |
echo "$line_0" | tee -a $SUMMARY |
echo "$line_0" | tee -a $SUMMARY |
1250 |
echo "$line_1" | tee -a $SUMMARY |
echo "$line_1" | tee -a $SUMMARY |
1255 |
else |
else |
1256 |
echo "ADJOINT=true" >> $SUMMARY |
echo "ADJOINT=true" >> $SUMMARY |
1257 |
echo >> $SUMMARY |
echo >> $SUMMARY |
1258 |
|
if [ $MATCH_CRIT -lt 10 ] ; |
1259 |
|
then line_0="default "$MATCH_CRIT ; |
1260 |
|
else line_0="default "$MATCH_CRIT ; fi |
1261 |
|
echo "$line_0" | tee -a $SUMMARY |
1262 |
cat << EOF | tee -a $SUMMARY |
cat << EOF | tee -a $SUMMARY |
1263 |
G D M C G |
G D M C G |
1264 |
E p a R o r |
E p a R o r |
1267 |
|
|
1268 |
EOF |
EOF |
1269 |
fi |
fi |
1270 |
|
echo "-------------------------------------------------------------------------------" |
1271 |
|
|
1272 |
# ...and each test directory... |
# ...and each test directory... |
1273 |
for dir in $TESTDIRS ; do |
for dir in $TESTDIRS ; do |
1274 |
|
|
1275 |
|
# set builddir & rundir: |
1276 |
|
builddir="build" |
1277 |
|
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1278 |
|
rundir="run" |
1279 |
|
pfxdir="tr_$rundir" |
1280 |
|
if test ! -d $dir/$rundir ; then |
1281 |
|
rundir=$builddir |
1282 |
|
fi |
1283 |
|
CODE_DIR=$dir/$code_dir |
1284 |
|
BUILD_DIR=$dir/$builddir |
1285 |
|
|
1286 |
# Cleanup only! |
# Cleanup only! |
1287 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1288 |
if test -r $dir/build/Makefile ; then |
echo -n ' --- dir:' $BUILD_DIR ': ' |
1289 |
( cd $dir/build ; make CLEAN ) |
makeclean $BUILD_DIR |
1290 |
|
( cd $BUILD_DIR |
1291 |
|
rm -f $EXECUTABLE *.bak |
1292 |
|
rm -f genmake_state genmake_*optfile genmake.log |
1293 |
|
rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
1294 |
|
) |
1295 |
|
if test -d $dir/$rundir/CVS ; then |
1296 |
|
echo -n ' --- dir:' $dir/$rundir ': ' |
1297 |
|
run_clean $dir/$rundir |
1298 |
fi |
fi |
1299 |
if test -r $dir/input/Makefile ; then |
trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')` |
1300 |
( cd $dir/input ; make CLEAN ) |
ttd=`echo $trdir | wc -w` |
1301 |
|
if test $ttd != 0 ; then |
1302 |
|
echo ' --- rm dir:' $trdir |
1303 |
|
( cd $dir ; rm -rf $trdir ) |
1304 |
fi |
fi |
1305 |
continue |
continue |
1306 |
fi |
fi |
1307 |
|
|
1308 |
# Verify that the testdir exists and contains previous |
# Verify that the testdir exists and contains previous |
1309 |
# results in the correct location--or skip this directory! |
# results in the correct location--or skip this directory! |
1310 |
fout= |
fout=$dir"/results/"$ref_outp |
|
if test "x$ADM" = x ; then |
|
|
fout=$dir"/results/output.txt" |
|
|
else |
|
|
fout=$dir"/results_ad/output.txt_adm" |
|
|
fi |
|
1311 |
if test ! -r $fout ; then |
if test ! -r $fout ; then |
1312 |
echo "can't read \"$fout\" -- skipping $dir" |
echo "can't read \"$fout\" -- skipping $dir" |
1313 |
continue |
continue |
1314 |
fi |
fi |
|
if test "x$ADM" = x ; then |
|
|
check_for_add_mon_output $fout |
|
|
fi |
|
1315 |
|
|
1316 |
# Check for additional types of monitor output |
# Check for specific files for particular type of run |
1317 |
|
|
1318 |
builddir="input" |
if test "x$MPI" != "x0" ; then |
1319 |
rundir="input" |
if test -r $CODE_DIR"/SIZE.h_mpi" ; then |
1320 |
use_seperate_build=0 |
#- create new SIZE.h with no more than '$MPI' Procs |
1321 |
if test -d $dir/build -a -r $dir/build ; then |
mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI |
1322 |
builddir="build" |
LOC_NPROC=$? |
1323 |
rundir="build" |
( cd $BUILD_DIR |
1324 |
use_seperate_build=1 |
if test -r SIZE.h.mpi ; then |
1325 |
linkdata $use_seperate_build $dir/$rundir |
cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$? |
1326 |
|
else RETVAL=1 |
1327 |
|
fi |
1328 |
|
if test "x$RETVAL" = x0 ; then |
1329 |
|
rm -f tr_size.mpi |
1330 |
|
else |
1331 |
|
rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi |
1332 |
|
fi |
1333 |
|
) |
1334 |
|
else |
1335 |
|
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1336 |
|
continue |
1337 |
|
fi |
1338 |
|
if test "x$MPI_MFILE" != x ; then |
1339 |
|
#- create new MPI machine-file with the right number of Procs |
1340 |
|
rm -f $LOC_MFILE |
1341 |
|
cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE |
1342 |
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1343 |
|
if [ $nl -lt $LOC_NPROC ] ; then |
1344 |
|
rm -f $LOC_MFILE |
1345 |
|
cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE |
1346 |
|
#sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE |
1347 |
|
fi |
1348 |
|
if [ $verbose -gt 1 ]; then |
1349 |
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1350 |
|
echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC" |
1351 |
|
fi |
1352 |
|
fi |
1353 |
fi |
fi |
1354 |
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1355 |
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1356 |
|
continue |
1357 |
|
fi |
1358 |
|
if test "x$MPI" != "x0" -a "x$MULTI_THREAD" = "xt" ; then |
1359 |
|
retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/input/eedata.mth"` |
1360 |
|
if test $retv != 0 ; then |
1361 |
|
echo "input/eedata.mth tiling misfit -- skipping $dir" |
1362 |
|
continue |
1363 |
|
fi |
1364 |
|
fi |
1365 |
|
|
1366 |
# Check whether there are "extra runs" for this testdir |
# Check whether there are "extra runs" for this testdir |
1367 |
extra_runs= |
extra_runs= |
1368 |
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
if test "x$NORUN" = xf ; then |
1369 |
ex_run_dirs=`( cd $dir ; echo input.* )` |
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
1370 |
echo "ex_run_dirs='$ex_run_dirs'" |
fi |
1371 |
for exd in $ex_run_dirs ; do |
#echo "ex_run_dirs='$ex_run_dirs'" |
1372 |
name=`echo $exd | sed -e 's/input.//g'` |
for exd in $ex_run_dirs ; do |
1373 |
outf="$dir/results/output.txt.$name" |
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1374 |
if test -f $outf -a -r $outf ; then |
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1375 |
|
outf="$dir/results/$refExOut" |
1376 |
|
if test -f $outf -a -r $outf ; then |
1377 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1378 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1379 |
|
if test "x$MPI" = "x0" ; then |
1380 |
extra_runs="$extra_runs $name" |
extra_runs="$extra_runs $name" |
1381 |
|
else |
1382 |
|
retv=`check_eedata $BUILD_DIR"/SIZE.h.mpi" $dir"/"$exd"/eedata.mth"` |
1383 |
|
if test $retv = 0 ; then |
1384 |
|
extra_runs="$extra_runs $name" |
1385 |
|
else |
1386 |
|
echo $exd"/eedata.mth tiling misfit -- skipping $dir" |
1387 |
|
fi |
1388 |
|
fi |
1389 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1390 |
fi |
fi |
1391 |
done |
else |
1392 |
fi |
extra_runs="$extra_runs $name" |
1393 |
|
fi |
1394 |
|
fi |
1395 |
|
done |
1396 |
|
|
1397 |
if test "x$ADM" = x ; then |
echo |
1398 |
code_dir=code |
if test "x$extra_runs" = "x" ; then |
1399 |
CODE_DIR=$dir/code |
echo "Experiment: $dir" |
1400 |
else |
else |
1401 |
code_dir=code_ad |
echo "Experiment: $dir ; extra_runs=$extra_runs" |
|
CODE_DIR=$dir/code_ad |
|
1402 |
fi |
fi |
|
BUILD_DIR=$dir/$builddir |
|
|
|
|
|
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
|
|
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
|
|
continue |
|
|
fi |
|
|
|
|
|
echo "-------------------------------------------------------------------------------" |
|
|
echo |
|
|
echo "Experiment: $dir" |
|
1403 |
echo |
echo |
1404 |
unset genmake makedepend make run |
unset genmake makedepend make run |
1405 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
results=$EMPTY_RESULTS |
1406 |
|
|
1407 |
# Create an output dir for each OPTFILE/tdir combination |
# Create an output dir for each OPTFILE/tdir combination |
1408 |
rel_CDIR=$DRESULTS"/"$dir |
locDIR=$DRESULTS"/"$dir |
1409 |
mkdir $rel_CDIR |
mkdir $locDIR |
1410 |
CDIR=`pwd`"/$rel_CDIR" |
CDIR=`pwd`"/$locDIR" |
1411 |
|
|
1412 |
if test "x$CLEANUP" = xt ; then |
if test "x$NORUN" = xt ; then |
1413 |
makeclean $dir/$builddir |
run=N |
1414 |
|
genmakemodel $dir/$builddir && genmake=Y \ |
1415 |
|
&& makeclean $dir/$builddir \ |
1416 |
|
&& symlink_mpifiles $dir $code_dir $builddir \ |
1417 |
|
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1418 |
|
&& makemodel $dir/$builddir && make=Y |
1419 |
else |
else |
1420 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1421 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1422 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1423 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1424 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1425 |
&& linkdata $use_seperate_build $dir/$rundir \ |
&& run_clean $dir/$rundir \ |
1426 |
|
&& linkdata $dir/$rundir $inputdir \ |
1427 |
&& runmodel $dir/$rundir && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1428 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1429 |
fi |
fi |
1430 |
|
#echo "results='$results'" |
1431 |
echo |
|
|
if test "x$ADM" = x ; then |
|
1432 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1433 |
echo |
echo 1>&2 |
1434 |
echo "$fres" >> $SUMMARY |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1435 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
touch $locDIR"/summary.txt" |
1436 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1437 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "tdir='$dir'" >> $locDIR"/summary.txt" |
1438 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
if test "x$ADM" = xt ; then |
1439 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt" |
1440 |
|
nerr=`grep -c 'TAF *.* ERROR ' $dir/$builddir/taf_ad.log` |
1441 |
|
nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' $dir/$builddir/taf_ad.log` |
1442 |
|
echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \ |
1443 |
|
>> $locDIR"/summary.txt" |
1444 |
|
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1445 |
|
>> $locDIR"/summary.txt" |
1446 |
|
fi |
1447 |
|
|
|
OLD_COMMAND=$COMMAND |
|
|
# COMMAND="./mitgcmuv > output.txt" |
|
1448 |
for ex in $extra_runs ; do |
for ex in $extra_runs ; do |
1449 |
test -e "$dir/tr_run.$ex" && rm -rf "$dir/tr_run.$ex" |
unset run |
1450 |
mkdir "$dir/tr_run.$ex" |
results=$EMPTY_RESULTS |
1451 |
links=`( cd "$dir/input" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
# reference output file |
1452 |
( |
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1453 |
cd "$dir/tr_run.$ex" |
# Create an output dir for each OPTFILE/tdir.ex combination |
1454 |
for i in $links; do |
locDIR=$DRESULTS"/"$dir"."$ex |
1455 |
ln -s ../input/$i $i |
mkdir $locDIR |
1456 |
done |
CDIR=`pwd`"/$locDIR" |
1457 |
) |
test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex" |
1458 |
links=`( cd "$dir/input.$ex" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
run_clean $dir/$pfxdir.$ex |
1459 |
( |
linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir |
1460 |
cd "$dir/tr_run.$ex" |
runmodel $dir/$pfxdir.$ex && run=Y \ |
1461 |
for i in $links; do |
&& results=`testoutput_run $dir $pfxdir.$ex $refExOut` |
|
test -e $i && rm -f $i |
|
|
ln -s ../input.$ex/$i $i |
|
|
done |
|
|
ln -s ../$builddir/mitgcmuv mitgcmuv |
|
|
) |
|
|
runmodel $dir/tr_run.$ex && run=Y \ |
|
|
&& results=`testoutput $dir tr_run.$ex "."$ex` |
|
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
|
1462 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1463 |
fres="$fres.$ex" |
fres="$fres.$ex" |
1464 |
echo |
echo 1>&2 |
1465 |
echo "$fres" >> $SUMMARY |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1466 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
touch $locDIR"/summary.txt" |
1467 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1468 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt" |
1469 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
if test "x$ADM" = xt ; then |
1470 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \ |
1471 |
|
>> $locDIR"/summary.txt" |
1472 |
|
fi |
1473 |
|
if test "x$POSTCLEAN" = x2 ; then |
1474 |
|
run_clean $dir/$pfxdir.$ex |
1475 |
|
fi |
1476 |
done |
done |
1477 |
COMMAND=$OLD_COMMAND |
|
1478 |
else |
if test -f $DRESULTS"/"genmake_state ; then : ; else |
1479 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
if test -f $dir/$builddir/Makefile ; then |
1480 |
fres=$fres"$results $dir" |
mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'` |
1481 |
echo |
echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state |
1482 |
echo "$fres" >> $SUMMARY |
sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state |
1483 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
echo " $mkOpt" >> $DRESULTS/genmake_state |
1484 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
if test "x$OPTFILE" = xNONE ; then |
1485 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
eval $mkOpt |
1486 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\ |
1487 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
$SUMMARY > tr_0.tmp_log |
1488 |
|
RETVAL=$? |
1489 |
|
if test "x$RETVAL" = x0 ; then rm -f $SUMMARY |
1490 |
|
cp tr_0.tmp_log $SUMMARY |
1491 |
|
else rm -f tr_0.tmp_log |
1492 |
|
fi |
1493 |
|
fi |
1494 |
|
gmkLog=$dir/$builddir/genmake.log |
1495 |
|
grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1 |
1496 |
|
RETVAL=$? |
1497 |
|
if test "x$RETVAL" = x0 ; then |
1498 |
|
echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state |
1499 |
|
sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \ |
1500 |
|
| grep -v '^... compiler version ' > tr_1.tmp_log |
1501 |
|
sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \ |
1502 |
|
>> $DRESULTS/genmake_state |
1503 |
|
rm -f tr_1.tmp_log |
1504 |
|
fi |
1505 |
|
fi |
1506 |
|
fi |
1507 |
|
#postclean $dir/$builddir |
1508 |
|
if test "x$POSTCLEAN" = x2 ; then |
1509 |
|
makeclean $dir/$builddir \ |
1510 |
|
&& run_clean $dir/$rundir |
1511 |
fi |
fi |
1512 |
|
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi |
1513 |
|
|
1514 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1515 |
|
|
1516 |
done |
done |
1517 |
|
|
1518 |
printf "Start time: " >> $SUMMARY |
printf "Start time: " >> $SUMMARY |
1519 |
echo $start_date >> $SUMMARY |
echo "$start_date" >> $SUMMARY |
1520 |
printf "End time: " >> $SUMMARY |
printf "End time: " >> $SUMMARY |
1521 |
date >> $SUMMARY |
date >> $SUMMARY |
1522 |
|
|
1541 |
echo "An email containing results was sent to the following addresses:" |
echo "An email containing results was sent to the following addresses:" |
1542 |
echo " \"$ADDRESSES\"" |
echo " \"$ADDRESSES\"" |
1543 |
echo |
echo |
1544 |
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1545 |
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1546 |
fi |
fi |
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
|
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
|
1547 |
fi |
fi |
1548 |
fi |
fi |
1549 |
|
|
1550 |
# rm -f tmp_cmpnum.f a.out |
if test "x$QUICK" = xf -a "x$NORUN" = xf ; then |
1551 |
rm -f tmp_cmpnum.c tmp_cmpnum |
rm -f tr_cmpnum.c tr_cmpnum |
1552 |
|
fi |
1553 |
|
|
1554 |
if test "x$CLEANUP" != xt ; then |
if test "x$CLEANUP" != xt ; then |
1555 |
cat $SUMMARY |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1556 |
if test -e tr_out.txt ; then |
if test -e tr_out.txt ; then |
1557 |
mv tr_out.txt tr_out.txt.old |
mv tr_out.txt tr_out.txt.old |
1558 |
fi |
fi |
1559 |
cat $SUMMARY > tr_out.txt |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1560 |
fi |
fi |
1561 |
|
|
1562 |
if test "x$DELDIR" = xt ; then |
if test "x$DELDIR" = xt ; then |