1 |
#! /usr/bin/env bash |
2 |
# |
3 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.147 2010/11/03 19:28:18 jmc Exp $ |
4 |
# $Name: $ |
5 |
# |
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|
7 |
usage() |
8 |
{ |
9 |
echo |
10 |
echo "Usage: $0 [OPTIONS]" |
11 |
echo |
12 |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
14 |
echo " (-mth) run multi-threaded (using eedata.mth)" |
15 |
echo " (-mpi) compile and run using MPI" |
16 |
echo " (-ieee/-noieee) if possible, use IEEE compiler flags" |
17 |
echo " (DEF=\"-ieee\")" |
18 |
echo " (-gsl) compile with \"-gsl\" flag" |
19 |
echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable" |
20 |
echo " (-optfile|-of) STRING list of optfiles to use" |
21 |
echo " (-addr|-a) STRING list of email recipients" |
22 |
echo " (DEF=\"\" no email is sent)" |
23 |
echo " (-mpackdir|-mpd) DIR location of the mpack utility" |
24 |
echo " (DEF=\"../tools/mpack-1.6\")" |
25 |
echo " (-tdir|-t) STRING list of group and/or exp. dirs to test" |
26 |
echo " (recognized groups: basic, tutorials)" |
27 |
echo " (DEF=\"\" which test all)" |
28 |
echo " (-skipdir|-skd) STRING list of exp. dirs to skip" |
29 |
echo " (DEF=\"\" which test all)" |
30 |
echo " (-bash|-b) STRING preferred location of a \"bash\" or" |
31 |
echo " Bourne-compatible \"sh\" shell" |
32 |
echo " (DEF=\"\" for \"bash\")" |
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echo " (-adm|-ad) perform an adjoint run" |
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echo " (-oad) perform an OpenAD adjoint run" |
35 |
echo " (-command|-c) STRING command to run" |
36 |
echo " (-makedepend|-md) STRING command to use for \"makedepend\"" |
37 |
echo " (-make|-m) STRING command to use for \"make\"" |
38 |
echo " (DEF=\"make\")" |
39 |
echo " (-odir) STRING used to build output directory name" |
40 |
echo " (DEF=\"hostname\")" |
41 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
42 |
echo " (DEF=\"1 2 3 4 5\")" |
43 |
echo " (-match) NUMBER Matching Criteria (number of digits)" |
44 |
echo " (DEF=\"$MATCH_CRIT\")" |
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echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
46 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
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echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)" |
48 |
echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)" |
49 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
50 |
echo " (-nogenmake|-ng) skip the genmake stage" |
51 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
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echo " (-deldir|-dd) on success, delete the output directory" |
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echo " (-ts) provide timing information per timestep" |
55 |
echo " (-papis) provide MFlop/s per timestep using PAPI" |
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echo " (-pcls) provide MFlop/s per timestep using PCL" |
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echo |
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echo "and where STRING can be a whitespace-delimited list" |
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echo "such as:" |
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echo |
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echo " -t 'exp0 exp2 exp3' " |
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echo " -addr='abc@123.com testing@home.org'" |
63 |
echo |
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echo "provided that the expression is properly quoted within the current" |
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echo "shell (note the use of single quotes to protect white space)." |
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echo |
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exit 1 |
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} |
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|
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# build the mpack utility |
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build_mpack() |
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{ |
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printf "building the mpack utility... " |
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MPACK="$MPACKDIR/mpack" |
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if test ! -x $MPACK ; then |
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if test ! -d $MPACKDIR ; then |
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echo |
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echo "Error: can't find \"$MPACKDIR\"" |
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echo " are you sure this program is being run in the correct " |
80 |
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
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echo |
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HAVE_MPACK=f |
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fi |
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if test "x$CC" = x ; then |
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export CC=cc |
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fi |
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printf "building mpack (using CC=$CC)... " |
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( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo |
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echo "Error building the mpack tools at: $MPACK_DIR" |
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echo |
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HAVE_MPACK=f |
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else |
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rm -f tr_build_mpack.out |
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HAVE_MPACK=t |
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echo "done" |
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fi |
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else |
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HAVE_MPACK=t |
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echo "already exist" |
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fi |
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} |
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|
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testoutput_var() |
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{ |
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# testoutput_var dir s1 label subdir reference_output |
109 |
# |
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# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
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# with same output from reference file $dir/results/$reference_output |
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# using search strings s1 and text label |
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|
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
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fi |
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if [ -r $1/$4/$OUTPUTFILE ]; then |
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grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
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lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
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if [ $lncntA -lt 2 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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else |
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echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: grep "$2" $1/results/$5 1>&2 |
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fi |
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grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
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lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
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if [ $lncntB -lt 2 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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if [ $lncntA -ne $lncntB ]; then |
142 |
if [ $verbose -gt 0 ]; then |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
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fi |
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return 99 |
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fi |
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has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
148 |
if [ $has_nan -gt 0 ] ; then |
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echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
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return 99 |
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fi |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
153 |
if [ $has_inf -gt 0 ] ; then |
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echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
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fi |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: compare_lines 1>&2 |
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fi |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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echo "-1" >> tmp3.txt |
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# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
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digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
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if [ $digits_of_similarity -eq 99 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
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fi |
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digits_of_similarity=99 |
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else |
177 |
if [ $verbose -gt 0 ]; then |
178 |
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
179 |
fi |
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fi |
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rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
182 |
|
183 |
return $digits_of_similarity |
184 |
} |
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|
186 |
testoutput_run() |
187 |
{ |
188 |
# testoutput_run directory subdir reference_output |
189 |
# |
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# test output from 1 run in "directory" |
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# --> same processing for adjoint & forward test |
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# default list of output variables to be checked: |
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# 1rst : main variable used to decide if it pass or FAIL |
194 |
# others : number of matching digits to be printed in summary.txt |
195 |
listChk=$DEF_CHECK_LIST |
196 |
# load experiment-specific list from file "tr_checklist" (if it exist) |
197 |
if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
198 |
sVar=`echo $listChk | awk '{print $1}'` |
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# remove 1rst var and expand the list: + => min max mean s.d |
200 |
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
201 |
| sed 's/+//g' | sed "s/^$sVar//"` |
202 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
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# check for ptracer output in reference_output file : |
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outpref=$1/results/$3 |
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ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
206 |
ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
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for ii in $PTRACERS_NUM ; do |
208 |
ptrfound=0 |
209 |
for jj in $ptr_mon ; do |
210 |
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
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tst=`grep $name $outpref | wc -l | awk '{print $1}'` |
212 |
if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
213 |
done |
214 |
if test $ptrfound = '1' ; then |
215 |
eval "HAVE_PTR0"$ii"=t" |
216 |
else |
217 |
eval "HAVE_PTR0"$ii"=f" |
218 |
if test "x$ADM" = x -a "x$OADM" = x; then |
219 |
# remove this ptr from the list of output variable to check |
220 |
# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
221 |
listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
222 |
fi |
223 |
fi |
224 |
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
225 |
done |
226 |
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
227 |
if test $tst != 1 ; then |
228 |
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
229 |
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
230 |
echo "==> WARNING: in checked list:" $listVar 1>&2 |
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#- put it back once: |
232 |
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
233 |
fi |
234 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
235 |
echo "listVar='$listVar'" > $locDIR"/summary.txt" |
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allargs="" |
237 |
for xx in $listVar |
238 |
do |
239 |
case $xx in |
240 |
'PS') if [ $debug -gt 0 ] |
241 |
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
242 |
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$? |
243 |
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
244 |
'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;; |
245 |
'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;; |
246 |
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;; |
247 |
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;; |
248 |
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;; |
249 |
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;; |
250 |
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;; |
251 |
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;; |
252 |
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;; |
253 |
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;; |
254 |
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;; |
255 |
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;; |
256 |
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;; |
257 |
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;; |
258 |
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;; |
259 |
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;; |
260 |
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;; |
261 |
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;; |
262 |
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
263 |
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;; |
264 |
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
265 |
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;; |
266 |
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
267 |
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;; |
268 |
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
269 |
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;; |
270 |
'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;; |
271 |
'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;; |
272 |
'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;; |
273 |
'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;; |
274 |
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;; |
275 |
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;; |
276 |
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;; |
277 |
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;; |
278 |
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;; |
279 |
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;; |
280 |
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;; |
281 |
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;; |
282 |
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;; |
283 |
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;; |
284 |
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;; |
285 |
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;; |
286 |
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;; |
287 |
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;; |
288 |
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
289 |
esac |
290 |
if test $xx = $sVar |
291 |
then allargs="$allargs > $yy <" |
292 |
else allargs="$allargs $yy" |
293 |
fi |
294 |
done |
295 |
|
296 |
nbVar=`echo $listVar | awk '{print NF}'` |
297 |
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
298 |
#-- fill line (up to standard length) with dot: |
299 |
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
300 |
echo $allargs $adNul |
301 |
else |
302 |
echo $allargs |
303 |
fi |
304 |
# <-- same processing for adjoint & forward test |
305 |
} |
306 |
|
307 |
genmakemodel() |
308 |
{ |
309 |
# genmakemodel directory |
310 |
if test "x$NOGENMAKE" = xt ; then |
311 |
echo "genmake skipped!" |
312 |
else |
313 |
if test "x$BASH" = x ; then |
314 |
GENMAKE2="../../../tools/genmake2" |
315 |
else |
316 |
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
317 |
fi |
318 |
( |
319 |
cd $1; |
320 |
command="$GENMAKE2 -ds -m $MAKE" |
321 |
if test "x$MKDEPEND" != x ; then |
322 |
command="$command -makedepend=$MKDEPEND" |
323 |
fi |
324 |
if test "x$ADM" = xt ; then |
325 |
command="$command --mods=../code_ad" |
326 |
elif test "x$OADM" = xt ; then |
327 |
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
328 |
else |
329 |
command="$command -mods=../code" |
330 |
fi |
331 |
if test "x$OPTFILE" != xNONE ; then |
332 |
command="$command -optfile=$OPTFILE" |
333 |
fi |
334 |
if test "x$IEEE" != x ; then |
335 |
command="$command -ieee" |
336 |
fi |
337 |
if test "x$GSL" = xt ; then |
338 |
command="$command -gsl" |
339 |
fi |
340 |
if test "x$MPI" = xt ; then |
341 |
command="$command -mpi" |
342 |
fi |
343 |
if test "x$MULTI_THREAD" = xt ; then |
344 |
#- run multi-threaded using OpenMP: |
345 |
command="$command -omp" |
346 |
fi |
347 |
if test "x$USE_R4" = xt ; then |
348 |
command="$command -use_r4" |
349 |
fi |
350 |
if test "x$TS" = xt ; then |
351 |
command="$command -ts" |
352 |
fi |
353 |
if test "x$PAPIS" = xt ; then |
354 |
command="$command -papis" |
355 |
else |
356 |
if test "x$PCLS" = xt ; then |
357 |
command="$command -pcls" |
358 |
fi |
359 |
fi |
360 |
printf 'genmake ... ' |
361 |
eval $command > genmake.tr_log 2>&1 |
362 |
RETVAL=$? |
363 |
# Reduce the size of the testing emails! |
364 |
head -100 Makefile > $CDIR/Makefile_head |
365 |
if test "x$RETVAL" != x0 ; then |
366 |
tail genmake.tr_log |
367 |
echo "genmakemodel: genmake failed" |
368 |
cp genmake.log genmake_* genmake.tr_log $CDIR |
369 |
return 1 |
370 |
else |
371 |
echo "successful" |
372 |
fi |
373 |
) |
374 |
fi |
375 |
} |
376 |
|
377 |
makeclean() |
378 |
{ |
379 |
# makeclean directory |
380 |
if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi |
381 |
if test "x$NOCLEAN" = xt ; then |
382 |
echo "make Clean skipped!" |
383 |
else |
384 |
( |
385 |
cd $1; |
386 |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
387 |
if test -r Makefile ; then |
388 |
printf 'clean build-dir: make Clean ... ' |
389 |
rm -f Makefile.old |
390 |
$MAKE Clean >> make.tr_log 2>&1 |
391 |
RETVAL=$? |
392 |
if test "x$RETVAL" != x0 ; then |
393 |
tail make.tr_log |
394 |
echo "makeclean: \"make Clean\" failed" |
395 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
396 |
return 1 |
397 |
fi |
398 |
echo successful |
399 |
else |
400 |
echo '' |
401 |
fi |
402 |
exit 0 |
403 |
) |
404 |
fi |
405 |
} |
406 |
|
407 |
run_clean() |
408 |
{ |
409 |
# run_clean directory |
410 |
if test "x$NOCLEAN" = xt ; then |
411 |
echo "run_clean skipped!" |
412 |
else |
413 |
( |
414 |
cd $1; |
415 |
printf 'clean run-dir ... ' |
416 |
# part of what is done after "make clean" when doing "make CLEAN" |
417 |
find . -name "*.meta" -exec rm {} \; |
418 |
find . -name "*.data" -exec rm {} \; |
419 |
find . -name "fort.*" -exec rm {} \; |
420 |
find . -type l -exec rm {} \; |
421 |
rm -f $EXECUTABLE $RUNLOG *.txt STD* *diagnostics.log datetime |
422 |
rm -rf mnc_test_* |
423 |
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
424 |
echo successful |
425 |
exit 0 |
426 |
) |
427 |
fi |
428 |
} |
429 |
|
430 |
makedependmodel() |
431 |
{ |
432 |
# makedependmodel directory |
433 |
if test "x$NODEPEND" = xt ; then |
434 |
echo "make depend skipped!" |
435 |
else |
436 |
( |
437 |
cd $1; |
438 |
printf 'make depend ... ' |
439 |
$MAKE depend >> make.tr_log 2>&1 |
440 |
RETVAL=$? |
441 |
if test "x$RETVAL" != x0 ; then |
442 |
tail make.tr_log |
443 |
echo "makedependmodel: make depend failed" |
444 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
445 |
return 1 |
446 |
else |
447 |
echo successful |
448 |
fi |
449 |
) |
450 |
fi |
451 |
} |
452 |
|
453 |
makemodel() |
454 |
{ |
455 |
# makemodel directory |
456 |
( |
457 |
if test "x$NOMAKE" = xt ; then |
458 |
cd $1; |
459 |
if test -x $EXECUTABLE ; then |
460 |
echo "make skipped!" |
461 |
else |
462 |
echo "no executable!" |
463 |
return 2 |
464 |
fi |
465 |
else |
466 |
cd $1; |
467 |
if test -r Makefile ; then |
468 |
printf 'make ... ' |
469 |
if test "x$ADM" = xt ; then |
470 |
$MAKE adall >> make.tr_log 2>&1 |
471 |
elif test "x$OADM" = xt ; then |
472 |
$MAKE adAll >> make.tr_log 2>&1 |
473 |
else |
474 |
if test "x$JOBS" = x ; then |
475 |
$MAKE >> make.tr_log 2>&1 |
476 |
else |
477 |
$MAKE -j $JOBS >> make.tr_log 2>&1 |
478 |
fi |
479 |
fi |
480 |
RETVAL=$? |
481 |
if test "x$RETVAL" != x0 ; then |
482 |
tail make.tr_log |
483 |
echo failed |
484 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
485 |
rm -f $EXECUTABLE |
486 |
return 1 |
487 |
else |
488 |
echo successful |
489 |
fi |
490 |
fi |
491 |
fi |
492 |
) |
493 |
} |
494 |
|
495 |
symlink_mpifiles() |
496 |
{ |
497 |
# Put special links so that MPI specific files are used |
498 |
# This MUST be invoked between makeclean and makelinks because |
499 |
# the Makefile will link to non-mpi files by default |
500 |
|
501 |
dir=$1 |
502 |
code_dir=$2 |
503 |
BUILD_DIR=$dir/$3 |
504 |
CODE_DIR=$dir/$code_dir |
505 |
|
506 |
# These are files that should replace their counter-part when using -mpi |
507 |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)` |
508 |
|
509 |
# Is this an MPI run? |
510 |
if test "x$MPI" = xt ; then |
511 |
# YES: We symbolically link these files to the build |
512 |
# dir so long as there is no real file in place |
513 |
for ii in $MPI_FILES ; do |
514 |
i=`echo $ii | sed 's:^\./::'` |
515 |
name=`echo $i | sed 's:_mpi::' ` |
516 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
517 |
RETVAL=$? |
518 |
if test "x$RETVAL" != x0 ; then |
519 |
if ! test -f $BUILD_DIR/$i ; then |
520 |
#echo Linking $name to $i |
521 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
522 |
fi |
523 |
fi |
524 |
done |
525 |
else |
526 |
# NO: We undo any _mpi symbolically linked files |
527 |
for ii in $MPI_FILES ; do |
528 |
i=`echo $ii | sed 's:^\./::'` |
529 |
name=`echo $i | sed 's:_mpi::' ` |
530 |
if test -L $BUILD_DIR/$name ; then |
531 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
532 |
RETVAL=$? |
533 |
if test "x$RETVAL" = x0 ; then |
534 |
#echo Un-linking $name from $linktarg |
535 |
rm -f $BUILD_DIR/$name |
536 |
fi |
537 |
fi |
538 |
done |
539 |
fi |
540 |
|
541 |
} |
542 |
|
543 |
linkdata() |
544 |
{ |
545 |
# linkdata run_dir input_dir_1 input_dir_2 ... |
546 |
# |
547 |
# symbolically link data files to run directory |
548 |
if test -d $1 ; then |
549 |
( |
550 |
cd $1 ; shift |
551 |
echo 'linkdata from dirs:' $* |
552 |
inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')` |
553 |
for xx in $inpMPI ; do |
554 |
if test -r "../"$1"/"$xx ; then |
555 |
# found 1 _mpi sfx file in 1rst input dir and it is readable |
556 |
yy=`echo $xx | sed 's:\.mpi$::'` |
557 |
if test "x$MPI" = "xt" ; then |
558 |
# mpi test: remove symbolic link & link _mpi sfx file |
559 |
if test -h $yy ; then rm -f $yy ; fi |
560 |
if test ! -r $yy ; then |
561 |
ln -sf "../"$1"/"$xx $yy ; |
562 |
printf " $xx" 1>&2 |
563 |
fi |
564 |
else |
565 |
# not mpi test: remove symbolic link |
566 |
if test -h $yy ; then rm -f $yy ; fi |
567 |
fi |
568 |
fi |
569 |
done |
570 |
if test -r "../"$1"/eedata.mth" ; then |
571 |
# found eedata.mth in 1rst input dir and it is readable |
572 |
if test "x$MULTI_THREAD" = "xt" ; then |
573 |
# multi-threaded test: remove symbolic link & link eedata.mth |
574 |
if test -h eedata ; then rm -f eedata ; fi |
575 |
if test ! -r eedata ; then |
576 |
ln -sf "../"$1"/eedata.mth" eedata ; |
577 |
printf ' eedata.mth' 1>&2 |
578 |
fi |
579 |
else |
580 |
# not multi-threaded test: remove eedata symbolic link |
581 |
if test -h eedata ; then rm -f eedata ; fi |
582 |
fi |
583 |
fi |
584 |
prevDir='NONE' |
585 |
for ldir in $* ; do |
586 |
if test -d "../"$ldir -a $ldir != $prevDir ; then |
587 |
printf " ldir=${ldir}:" 1>&2 |
588 |
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
589 |
for i in $files ; do |
590 |
if test ! -d "../"$ldir/$i ; then |
591 |
if test ! -r $i ; then |
592 |
printf ' '$i 1>&2 |
593 |
ln -sf "../"$ldir"/"$i $i |
594 |
fi |
595 |
fi |
596 |
done |
597 |
printf ' ;' 1>&2 |
598 |
if test -x "../"$ldir"/"prepare_run ; then |
599 |
"../"$ldir"/"prepare_run 1>&2 |
600 |
else |
601 |
echo '' 1>&2 |
602 |
fi |
603 |
fi |
604 |
prevDir=$ldir |
605 |
done |
606 |
) |
607 |
fi |
608 |
} |
609 |
|
610 |
runmodel() |
611 |
{ |
612 |
# runmodel directory |
613 |
# |
614 |
# runs "$COMMAND in "directory" |
615 |
# (where "$COMMAND" is relative to "directory") |
616 |
( |
617 |
cd $1 |
618 |
printf 'runmodel in %s ... ' $1 |
619 |
if test -L $EXECUTABLE ; then |
620 |
if test -x "../"$builddir"/"$EXECUTABLE ; then |
621 |
diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
622 |
outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi |
623 |
else rm -f $EXECUTABLE |
624 |
fi |
625 |
fi |
626 |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
627 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
628 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
629 |
fi |
630 |
if test ! -x $EXECUTABLE ; then |
631 |
rm -f $RUNLOG ; touch $RUNLOG |
632 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
633 |
echo " no executable:" $EXECUTABLE >> $RUNLOG |
634 |
RETVAL=8 |
635 |
ENDVAL=-1 |
636 |
else |
637 |
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
638 |
# output do not exist or is older than executable: |
639 |
rm -f $RUNLOG ; touch $RUNLOG |
640 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
641 |
( eval $COMMAND ) >> $RUNLOG 2>&1 |
642 |
RETVAL=$? |
643 |
else |
644 |
RETVAL=0 |
645 |
if test -f $RUNLOG ; then |
646 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
647 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
648 |
else |
649 |
touch $RUNLOG |
650 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
651 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
652 |
echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1 |
653 |
fi |
654 |
fi |
655 |
ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
656 |
fi |
657 |
rm -f run.log_tmp |
658 |
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
659 |
echo successful |
660 |
printf '=> output from running in %s :\n' $1 1>&2 |
661 |
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
662 |
# === Reduce the size of the testing emails! |
663 |
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
664 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
665 |
return 0 |
666 |
elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then |
667 |
#-- for some weird cases (run is finihed but with error code) |
668 |
echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')' |
669 |
printf '=> output from running in %s :\n' $1 1>&2 |
670 |
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
671 |
return 0 |
672 |
else |
673 |
echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')' |
674 |
printf '=> output from running in %s :\n' $1 1>&2 |
675 |
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
676 |
cp $RUNLOG $CDIR"/"$RUNLOG |
677 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
678 |
return 1 |
679 |
fi |
680 |
) |
681 |
} |
682 |
|
683 |
createcodelet() |
684 |
{ |
685 |
# create codelet for comparing model output |
686 |
|
687 |
printf "creating the comparison code (using CC=$CC)... " |
688 |
cat > tr_cmpnum.c <<EOF |
689 |
#include <stdio.h> |
690 |
#include <math.h> |
691 |
int main( int argc, char** argv ) { |
692 |
int linnum,cmplin,best,lncnt; |
693 |
double a,b,abave,relerr; |
694 |
best = -22; |
695 |
lncnt = 0; |
696 |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
697 |
scanf("%d", &linnum); |
698 |
if (linnum == -1) break; |
699 |
scanf("%lf", &a); scanf("%lf", &b); |
700 |
abave = 0.5*(fabs(a)+fabs(b)); |
701 |
if ( abave == abave ) { |
702 |
if (abave > 0.0) { |
703 |
relerr=fabs(a-b)/abave; |
704 |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
705 |
else { cmplin = -16 ; } |
706 |
best = (best > cmplin) ? best : cmplin; } |
707 |
else { cmplin = -22 ; } |
708 |
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
709 |
} |
710 |
else { |
711 |
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
712 |
break; } |
713 |
} |
714 |
if (lncnt == 999) best=-29; |
715 |
if (linnum != -1) best=-99; |
716 |
printf("%d\n", -best); |
717 |
return 0; |
718 |
} |
719 |
EOF |
720 |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
721 |
|
722 |
if [ -x ./tr_cmpnum ]; then |
723 |
echo "OK" |
724 |
return 0 |
725 |
else |
726 |
echo |
727 |
echo "ERROR: failed to compile comparison code -- please specify" |
728 |
echo " a C compiler using the CC environment variable." |
729 |
exit 1 |
730 |
fi |
731 |
} |
732 |
|
733 |
formatresults() |
734 |
{ |
735 |
# formatresults expt genmake depend make run results* |
736 |
|
737 |
nm=$1 |
738 |
printf '%s %s %s %s' $2 $3 $4 $5 |
739 |
shift; shift; shift; shift; shift; |
740 |
listPrt=$@ |
741 |
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
742 |
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
743 |
printf '%3s' $listPrt |
744 |
# line below does not work on hp-ux_ia64 : do those substitutions later on |
745 |
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
746 |
|
747 |
if [ $xx = '..' ]; then |
748 |
printf ' N/O ' |
749 |
elif [ $xx = '--' ]; then |
750 |
printf ' N/O ' |
751 |
elif [ $xx = 99 ]; then |
752 |
printf ' N/O ' |
753 |
else |
754 |
if [ $xx -ge $MATCH_CRIT ]; then |
755 |
printf ' pass' |
756 |
else |
757 |
printf ' FAIL' |
758 |
fi |
759 |
fi |
760 |
printf ' %s' $nm |
761 |
printf '\n' |
762 |
|
763 |
} |
764 |
|
765 |
scandirs() |
766 |
{ |
767 |
if [ $# -eq 1 ]; then |
768 |
for arg in * ; do |
769 |
test -f $arg/$1 && echo $arg |
770 |
done |
771 |
else |
772 |
echo $* |
773 |
fi |
774 |
} |
775 |
|
776 |
|
777 |
check_eedata() |
778 |
{ |
779 |
# check_eedata size.h eedata |
780 |
if [ $# -eq 2 ] ; then |
781 |
if test -f $1 -a -f $2 ; then |
782 |
sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'` |
783 |
nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
784 |
if test "x$nx" = x ; then |
785 |
rx=10 |
786 |
else |
787 |
rx=`expr $sx % $nx` |
788 |
fi |
789 |
sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'` |
790 |
ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
791 |
if test "x$ny" = x ; then |
792 |
ry=20 |
793 |
else |
794 |
ry=`expr $sy % $ny` |
795 |
fi |
796 |
echo `expr $rx + $ry` |
797 |
else |
798 |
echo '-1' |
799 |
fi |
800 |
else |
801 |
echo '-2' |
802 |
fi |
803 |
|
804 |
} |
805 |
|
806 |
############################################################################### |
807 |
|
808 |
|
809 |
# Default properties |
810 |
debug=0 |
811 |
verbose=1 |
812 |
clean=0 |
813 |
|
814 |
IEEE=true |
815 |
if test "x$MITGCM_IEEE" != x ; then |
816 |
IEEE=$MITGCM_IEEE |
817 |
fi |
818 |
GSL=f |
819 |
|
820 |
CLEANUP=f |
821 |
NORUN=f |
822 |
QUICK=f |
823 |
NOMAKE=f |
824 |
NOGENMAKE=f |
825 |
NOCLEAN=f |
826 |
NODEPEND=f |
827 |
POSTCLEAN=f |
828 |
|
829 |
BASH= |
830 |
OPTFILE=NONE |
831 |
ADDRESSES= |
832 |
TESTDIRS= |
833 |
SKIPDIRS= |
834 |
MPACKDIR="../tools/mpack-1.6" |
835 |
HAVE_MPACK= |
836 |
MPACK= |
837 |
COMMAND= |
838 |
MKDEPEND= |
839 |
if test "x$MAKE" = x ; then |
840 |
MAKE=make |
841 |
fi |
842 |
if test "x$CC" = x ; then |
843 |
CC=cc |
844 |
fi |
845 |
JOBS= |
846 |
MPI=f |
847 |
MULTI_THREAD=f |
848 |
OUTDIR= |
849 |
DELDIR= |
850 |
USE_R4= |
851 |
|
852 |
ADM= |
853 |
OADM= |
854 |
|
855 |
# list of pTracers to check for monitor output |
856 |
PTRACERS_NUM="1 2 3 4 5" |
857 |
|
858 |
MATCH_CRIT=10 |
859 |
|
860 |
printf "parsing options... " |
861 |
|
862 |
ac_prev= |
863 |
for ac_option ; do |
864 |
|
865 |
# If the previous option needs an argument, assign it. |
866 |
if test -n "$ac_prev"; then |
867 |
eval "$ac_prev=\$ac_option" |
868 |
ac_prev= |
869 |
continue |
870 |
fi |
871 |
|
872 |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
873 |
|
874 |
case $ac_option in |
875 |
|
876 |
-help | --help | -h | --h) |
877 |
usage ;; |
878 |
|
879 |
-optfile | --optfile | -of | --of) |
880 |
ac_prev=OPTFILE ;; |
881 |
-optfile=* | --optfile=* | -of=* | --of=*) |
882 |
OPTFILE=$ac_optarg ;; |
883 |
|
884 |
-addr | --addr | -a | --a) |
885 |
ac_prev=ADDRESSES ;; |
886 |
-addr=* | --addr=* | -a=* | --a=*) |
887 |
ADDRESSES=$ac_optarg ;; |
888 |
-mpackdir | --mpackdir | -mpd | --mpd) |
889 |
ac_prev=MPACKDIR ;; |
890 |
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) |
891 |
MPACKDIR=$ac_optarg ;; |
892 |
|
893 |
-tdir | --tdir | -t | --t) |
894 |
ac_prev=TESTDIRS ;; |
895 |
-tdir=* | --tdir=* | -t=* | --t=*) |
896 |
TESTDIRS=$ac_optarg ;; |
897 |
|
898 |
-skipdir | --skipdir | -skd | --skd) |
899 |
ac_prev=SKIPDIRS ;; |
900 |
-skipdir=* | --skipdir=* | -skd=* | --skd=*) |
901 |
SKIPDIRS=$ac_optarg ;; |
902 |
|
903 |
-bash | --bash | -b | --b) |
904 |
ac_prev=BASH ;; |
905 |
-bash=* | --bash=* | -b=* | --b=*) |
906 |
BASH=$ac_optarg ;; |
907 |
|
908 |
-command | --command | -c | --c) |
909 |
ac_prev=COMMAND ;; |
910 |
-command=* | --command=* | -c=* | --c=*) |
911 |
COMMAND=$ac_optarg ;; |
912 |
|
913 |
-makedepend | --makedepend | -md | --md) |
914 |
ac_prev=MKDEPEND ;; |
915 |
-makedepend=* | --makedepend=* | -md=* | --md=*) |
916 |
MKDEPEND=$ac_optarg ;; |
917 |
|
918 |
-make | --make | -m | --m) |
919 |
ac_prev=MAKE ;; |
920 |
-make=* | --make=* | -m=* | --m=*) |
921 |
MAKE=$ac_optarg ;; |
922 |
|
923 |
-odir | --odir) |
924 |
ac_prev=OUTDIR ;; |
925 |
-odir=* | --odir=*) |
926 |
OUTDIR=$ac_optarg ;; |
927 |
|
928 |
-ptracers | --ptracers | -ptr | --ptr) |
929 |
ac_prev=PTRACERS_NUM ;; |
930 |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
931 |
PTRACERS_NUM=$ac_optarg ;; |
932 |
|
933 |
-match | --match ) ac_prev=MATCH_CRIT ;; |
934 |
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
935 |
|
936 |
-j | --j) ac_prev=JOBS ;; |
937 |
-j=* | --j=*) JOBS=$ac_optarg ;; |
938 |
|
939 |
-clean | --clean) |
940 |
CLEANUP=t ; DELDIR=t ;; |
941 |
|
942 |
-norun | --norun | -nr | --nr) |
943 |
NORUN=t ;; |
944 |
-runonly | --runonly | -ro | --ro) |
945 |
QUICK=t ; NOMAKE=t ;; |
946 |
-quick | --quick | -q | --q) |
947 |
QUICK=t ;; |
948 |
-nogenmake | --nogenmake | -ng | --ng) |
949 |
NOGENMAKE=t ;; |
950 |
-noclean | --noclean | -nc | --nc) |
951 |
NOCLEAN=t ;; |
952 |
-nodepend | --nodepend | -nd | --nd) |
953 |
NODEPEND=t ;; |
954 |
|
955 |
-postclean | --postclean | -pc | --pc) |
956 |
POSTCLEAN=t ;; |
957 |
|
958 |
-mpi) MPI=t ;; |
959 |
|
960 |
-mth) MULTI_THREAD=t ;; |
961 |
|
962 |
-adm | -ad) ADM=t ;; |
963 |
|
964 |
-oad) OADM=t; NODEPEND=t ;; |
965 |
|
966 |
-ieee) IEEE=true ;; |
967 |
-noieee) IEEE= ;; |
968 |
-gsl) GSL=t ;; |
969 |
|
970 |
-verbose) verbose=2 ;; |
971 |
-debug) debug=1 ;; |
972 |
-quiet) verbose=0 ;; |
973 |
|
974 |
-deldir | -dd) DELDIR=t ;; |
975 |
|
976 |
-use_r4|-ur4) USE_R4=t ;; |
977 |
|
978 |
-ts) TS=t;; |
979 |
-papis) PAPIS=t;; |
980 |
-pcls) PCL=t;; |
981 |
|
982 |
-*) |
983 |
echo "Error: unrecognized option: "$ac_option |
984 |
usage |
985 |
;; |
986 |
|
987 |
*) |
988 |
echo "Error: unrecognized argument: "$ac_option |
989 |
usage |
990 |
;; |
991 |
|
992 |
esac |
993 |
|
994 |
done |
995 |
|
996 |
if test "x$QUICK" = xt ; then |
997 |
NOGENMAKE=t |
998 |
NOCLEAN=t |
999 |
NODEPEND=t |
1000 |
fi |
1001 |
|
1002 |
#- setting for forward or ADM testing |
1003 |
if test "x$ADM" = xt ; then |
1004 |
code_dir=code_ad |
1005 |
inputdir=input_ad |
1006 |
ref_outp="output_adm.txt" |
1007 |
EXECUTABLE="mitgcmuv_ad" |
1008 |
elif test "x$OADM" = xt ; then |
1009 |
code_dir=code_oad |
1010 |
inputdir=input_oad |
1011 |
ref_outp="output_oadm.txt" |
1012 |
EXECUTABLE="mitgcmuv_ad" |
1013 |
else |
1014 |
code_dir=code |
1015 |
inputdir=input |
1016 |
ref_outp="output.txt" |
1017 |
EXECUTABLE="mitgcmuv" |
1018 |
fi |
1019 |
|
1020 |
xx=`echo $TESTDIRS | awk '{print $1}'` |
1021 |
if test "x$TESTDIRS" = x ; then |
1022 |
LIST=`scandirs results/$ref_outp` |
1023 |
elif test $xx = 'start_from' ; then |
1024 |
xx=`echo $TESTDIRS | awk '{print $2}'` |
1025 |
LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"` |
1026 |
else |
1027 |
#- expand group of experiments: |
1028 |
LIST=" " |
1029 |
for xx in $TESTDIRS |
1030 |
do |
1031 |
case $xx in |
1032 |
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
1033 |
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
1034 |
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
1035 |
;; |
1036 |
'tutorials') |
1037 |
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
1038 |
*) LIST=${LIST}" "$xx ;; |
1039 |
esac |
1040 |
done |
1041 |
fi |
1042 |
#echo 'LIST='${LIST}'<' |
1043 |
#- skip dirs, remove duplicate and non-directory: |
1044 |
TESTDIRS=" " |
1045 |
count=0 |
1046 |
for xx in $LIST |
1047 |
do |
1048 |
yy=`echo $SKIPDIRS | grep -c $xx` |
1049 |
if test $yy = 0 ; then |
1050 |
if test -d $xx ; then |
1051 |
yy=`echo $TESTDIRS | grep -c $xx` |
1052 |
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
1053 |
else count=1 ; |
1054 |
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
1055 |
fi |
1056 |
else |
1057 |
if test $count = 1 ; then echo -n ", \"$xx\"" |
1058 |
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
1059 |
fi |
1060 |
fi |
1061 |
done |
1062 |
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
1063 |
#echo 'TESTDIRS='${TESTDIRS}'<' |
1064 |
|
1065 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
1066 |
OPTFILE=$MITGCM_OF |
1067 |
fi |
1068 |
|
1069 |
RUNLOG="run.tr_log" |
1070 |
OUTPUTFILE=$ref_outp |
1071 |
if test "x$COMMAND" = x ; then |
1072 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
1073 |
fi |
1074 |
if test "x$MPI" = xt ; then |
1075 |
OUTPUTFILE="STDOUT.0000" |
1076 |
fi |
1077 |
|
1078 |
echo "OK (COMMAND= $COMMAND )" |
1079 |
|
1080 |
# set the Default List of output variables to be checked: |
1081 |
# (use default or load experiment-specific list from file "tr_checklist") |
1082 |
# content : 1rst = main variable used to decide if it pass or FAIL |
1083 |
# others = number of matching digits to be printed in summary.txt |
1084 |
if test "x$ADM" = x -a "x$OADM" = x; then |
1085 |
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
1086 |
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
1087 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1088 |
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
1089 |
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
1090 |
else |
1091 |
DEF_CHECK_LIST='Grad Cost Grad' |
1092 |
EMPTY_RESULTS='.. ..' |
1093 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1094 |
fi |
1095 |
|
1096 |
# create the FORTRAN comparison code |
1097 |
if test -x tr_cmpnum ; then |
1098 |
echo "skipping comparison code build" |
1099 |
else |
1100 |
createcodelet |
1101 |
fi |
1102 |
|
1103 |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1104 |
if test "x$ADDRESSES" = x ; then |
1105 |
echo "skipping mpack build" |
1106 |
else |
1107 |
build_mpack |
1108 |
fi |
1109 |
|
1110 |
# Create a uniquely named directory to store results |
1111 |
CMDLINE=$0 |
1112 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1113 |
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
1114 |
else CMDLINE="$CMDLINE '$xx'" ; fi |
1115 |
done |
1116 |
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
1117 |
MACH=`hostname` |
1118 |
UNAMEA=`uname -a` |
1119 |
DATE=`date +%Y%m%d` |
1120 |
BASE="tr_"$MACH"_"$DATE"_" |
1121 |
if test "x$OUTDIR" != x ; then |
1122 |
BASE="tr_"$OUTDIR"_"$DATE"_" |
1123 |
else |
1124 |
short_name=`hostname | sed 's/\..*$//'` |
1125 |
BASE="tr_"$short_name"_"$DATE"_" |
1126 |
fi |
1127 |
DNUM=0 |
1128 |
DRESULTS="$BASE$DNUM" |
1129 |
while test -e $DRESULTS ; do |
1130 |
DNUM=$(( $DNUM + 1 )) |
1131 |
DRESULTS="$BASE$DNUM" |
1132 |
done |
1133 |
mkdir $DRESULTS |
1134 |
RETVAL=$? |
1135 |
if test "x$RETVAL" != x0 ; then |
1136 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
1137 |
exit 1 |
1138 |
fi |
1139 |
SUMMARY="$DRESULTS/summary.txt" |
1140 |
start_date=`date` |
1141 |
echo $start_date > $SUMMARY |
1142 |
echo 'run:' $CMDLINE >> $SUMMARY |
1143 |
echo 'on :' $UNAMEA >> $SUMMARY |
1144 |
|
1145 |
of_path= |
1146 |
if test "x$OPTFILE" != xNONE ; then |
1147 |
if test -r $OPTFILE ; then |
1148 |
# get the path |
1149 |
path=${OPTFILE%/*} |
1150 |
if test "x$path" = x ; then |
1151 |
of_path=`pwd` |
1152 |
else |
1153 |
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
1154 |
fi |
1155 |
file=${OPTFILE##*/} |
1156 |
OPTFILE=$of_path/$file |
1157 |
cp $OPTFILE $DRESULTS |
1158 |
echo >> $SUMMARY |
1159 |
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
1160 |
else |
1161 |
echo | tee $SUMMARY |
1162 |
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
1163 |
exit 1 |
1164 |
fi |
1165 |
else |
1166 |
echo >> $SUMMARY |
1167 |
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
1168 |
echo " so the genmake default will be used." >> $SUMMARY |
1169 |
fi |
1170 |
echo |
1171 |
echo >> $SUMMARY |
1172 |
if test "x$ADM" = x -a "x$OADM" = x; then |
1173 |
if [ $MATCH_CRIT -lt 10 ] ; |
1174 |
then line_0="default "$MATCH_CRIT ; |
1175 |
else line_0="default "$MATCH_CRIT ; fi |
1176 |
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1177 |
line_1="G D M c m s m s m s m s" |
1178 |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1179 |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1180 |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1181 |
for ii in $PTRACERS_NUM ; do |
1182 |
line_0="$line_0 --PTR 0"$ii"--" |
1183 |
line_1="$line_1 m s" |
1184 |
line_2="$line_2 m m e ." |
1185 |
line_3="$line_3 i a a d" |
1186 |
line_4="$line_4 n x n ." |
1187 |
done |
1188 |
echo "$line_0" | tee -a $SUMMARY |
1189 |
echo "$line_1" | tee -a $SUMMARY |
1190 |
echo "$line_2" | tee -a $SUMMARY |
1191 |
echo "$line_3" | tee -a $SUMMARY |
1192 |
echo "$line_4" | tee -a $SUMMARY |
1193 |
echo " " | tee -a $SUMMARY |
1194 |
else |
1195 |
echo "ADJOINT=true" >> $SUMMARY |
1196 |
echo >> $SUMMARY |
1197 |
if [ $MATCH_CRIT -lt 10 ] ; |
1198 |
then line_0="default "$MATCH_CRIT ; |
1199 |
else line_0="default "$MATCH_CRIT ; fi |
1200 |
echo "$line_0" | tee -a $SUMMARY |
1201 |
cat << EOF | tee -a $SUMMARY |
1202 |
G D M C G |
1203 |
E p a R o r |
1204 |
N n k u s a |
1205 |
2 d e n t d |
1206 |
|
1207 |
EOF |
1208 |
fi |
1209 |
echo "-------------------------------------------------------------------------------" |
1210 |
|
1211 |
# ...and each test directory... |
1212 |
for dir in $TESTDIRS ; do |
1213 |
|
1214 |
# set builddir & rundir: |
1215 |
builddir="build" |
1216 |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1217 |
rundir="run" |
1218 |
pfxdir="tr_$rundir" |
1219 |
if test ! -d $dir/$rundir ; then |
1220 |
rundir=$builddir |
1221 |
fi |
1222 |
CODE_DIR=$dir/$code_dir |
1223 |
BUILD_DIR=$dir/$builddir |
1224 |
|
1225 |
# Cleanup only! |
1226 |
if test "x$CLEANUP" = xt ; then |
1227 |
echo -n ' --- dir:' $BUILD_DIR ': ' |
1228 |
makeclean $BUILD_DIR |
1229 |
( cd $BUILD_DIR |
1230 |
rm -f $EXECUTABLE *.bak |
1231 |
rm -f genmake_state genmake_*optfile genmake.log |
1232 |
rm -f genmake.tr_log make.tr_log |
1233 |
) |
1234 |
if test -d $dir/$rundir/CVS ; then |
1235 |
echo -n ' --- dir:' $dir/$rundir ': ' |
1236 |
run_clean $dir/$rundir |
1237 |
fi |
1238 |
trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')` |
1239 |
ttd=`echo $trdir | wc -w` |
1240 |
if test $ttd != 0 ; then |
1241 |
echo ' --- rm dir:' $trdir |
1242 |
( cd $dir ; rm -rf $trdir ) |
1243 |
fi |
1244 |
continue |
1245 |
fi |
1246 |
|
1247 |
# Verify that the testdir exists and contains previous |
1248 |
# results in the correct location--or skip this directory! |
1249 |
fout=$dir"/results/"$ref_outp |
1250 |
if test ! -r $fout ; then |
1251 |
echo "can't read \"$fout\" -- skipping $dir" |
1252 |
continue |
1253 |
fi |
1254 |
|
1255 |
# Check for specific files for particular type of run |
1256 |
|
1257 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
1258 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1259 |
continue |
1260 |
fi |
1261 |
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1262 |
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1263 |
continue |
1264 |
fi |
1265 |
if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then |
1266 |
retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"` |
1267 |
if test $retv != 0 ; then |
1268 |
echo "input/eedata.mth tiling misfit -- skipping $dir" |
1269 |
continue |
1270 |
fi |
1271 |
fi |
1272 |
|
1273 |
# Check whether there are "extra runs" for this testdir |
1274 |
extra_runs= |
1275 |
if test "x$NORUN" = xf ; then |
1276 |
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
1277 |
fi |
1278 |
#echo "ex_run_dirs='$ex_run_dirs'" |
1279 |
for exd in $ex_run_dirs ; do |
1280 |
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1281 |
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1282 |
outf="$dir/results/$refExOut" |
1283 |
if test -f $outf -a -r $outf ; then |
1284 |
if test "x$MULTI_THREAD" = "xt" ; then |
1285 |
if test -r $dir"/"$exd"/eedata.mth" ; then |
1286 |
if test "x$MPI" = "xt" ; then |
1287 |
retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"` |
1288 |
if test $retv = 0 ; then |
1289 |
extra_runs="$extra_runs $name" |
1290 |
else |
1291 |
echo $exd"/eedata.mth tiling misfit -- skipping $dir" |
1292 |
fi |
1293 |
else |
1294 |
extra_runs="$extra_runs $name" |
1295 |
fi |
1296 |
#else echo $dir"/"$exd"/eedata.mth: not found" |
1297 |
fi |
1298 |
else |
1299 |
extra_runs="$extra_runs $name" |
1300 |
fi |
1301 |
fi |
1302 |
done |
1303 |
|
1304 |
echo |
1305 |
if test "x$extra_runs" = "x" ; then |
1306 |
echo "Experiment: $dir" |
1307 |
else |
1308 |
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1309 |
fi |
1310 |
echo |
1311 |
unset genmake makedepend make run |
1312 |
results=$EMPTY_RESULTS |
1313 |
|
1314 |
# Create an output dir for each OPTFILE/tdir combination |
1315 |
locDIR=$DRESULTS"/"$dir |
1316 |
mkdir $locDIR |
1317 |
CDIR=`pwd`"/$locDIR" |
1318 |
|
1319 |
if test "x$NORUN" = xt ; then |
1320 |
run=N |
1321 |
genmakemodel $dir/$builddir && genmake=Y \ |
1322 |
&& makeclean $dir/$builddir \ |
1323 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1324 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1325 |
&& makemodel $dir/$builddir && make=Y |
1326 |
else |
1327 |
genmakemodel $dir/$builddir && genmake=Y \ |
1328 |
&& makeclean $dir/$builddir \ |
1329 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1330 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1331 |
&& makemodel $dir/$builddir && make=Y \ |
1332 |
&& run_clean $dir/$rundir \ |
1333 |
&& linkdata $dir/$rundir $inputdir \ |
1334 |
&& runmodel $dir/$rundir && run=Y \ |
1335 |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1336 |
fi |
1337 |
#echo "results='$results'" |
1338 |
|
1339 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1340 |
echo 1>&2 |
1341 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1342 |
touch $locDIR"/summary.txt" |
1343 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1344 |
echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1345 |
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1346 |
echo "DATE='$DATE'" >> $locDIR"/summary.txt" |
1347 |
echo "tdir='$dir'" >> $locDIR"/summary.txt" |
1348 |
if test "x$ADM" = xt ; then |
1349 |
head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt" |
1350 |
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1351 |
>> $locDIR"/summary.txt" |
1352 |
fi |
1353 |
|
1354 |
for ex in $extra_runs ; do |
1355 |
unset run |
1356 |
results=$EMPTY_RESULTS |
1357 |
# reference output file |
1358 |
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1359 |
# Create an output dir for each OPTFILE/tdir.ex combination |
1360 |
locDIR=$DRESULTS"/"$dir"."$ex |
1361 |
mkdir $locDIR |
1362 |
CDIR=`pwd`"/$locDIR" |
1363 |
test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex" |
1364 |
run_clean $dir/$pfxdir.$ex |
1365 |
linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir |
1366 |
runmodel $dir/$pfxdir.$ex && run=Y \ |
1367 |
&& results=`testoutput_run $dir $pfxdir.$ex $refExOut` |
1368 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1369 |
fres="$fres.$ex" |
1370 |
echo 1>&2 |
1371 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1372 |
touch $locDIR"/summary.txt" |
1373 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1374 |
echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1375 |
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1376 |
echo "DATE='$DATE'" >> $locDIR"/summary.txt" |
1377 |
echo "tdir='$dir.$ex'" >> $locDIR"/summary.txt" |
1378 |
if test "x$ADM" = xt ; then |
1379 |
head -1 $dir/$builddir/taf_ad.log >> $locDIR"/summary.txt" |
1380 |
grep -A3 'Seconds in section "ALL' $dir/$pfxdir.$ex/$OUTPUTFILE \ |
1381 |
>> $locDIR"/summary.txt" |
1382 |
fi |
1383 |
if test "x$POSTCLEAN" = xt ; then |
1384 |
run_clean $dir/$pfxdir.$ex |
1385 |
fi |
1386 |
done |
1387 |
|
1388 |
if test -f $DRESULTS"/"genmake_state ; then : ; else |
1389 |
if test -f $dir/$builddir/Makefile ; then |
1390 |
mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'` |
1391 |
echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state |
1392 |
sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state |
1393 |
echo $mkOpt >> $DRESULTS/genmake_state |
1394 |
fi |
1395 |
fi |
1396 |
#postclean $dir/$builddir |
1397 |
if test "x$POSTCLEAN" = xt ; then |
1398 |
makeclean $dir/$builddir \ |
1399 |
&& run_clean $dir/$rundir |
1400 |
fi |
1401 |
|
1402 |
echo "-------------------------------------------------------------------------------" |
1403 |
|
1404 |
done |
1405 |
|
1406 |
printf "Start time: " >> $SUMMARY |
1407 |
echo "$start_date" >> $SUMMARY |
1408 |
printf "End time: " >> $SUMMARY |
1409 |
date >> $SUMMARY |
1410 |
|
1411 |
# If addresses were supplied and mpack built successfully, then try |
1412 |
# to send email using mpack. |
1413 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1414 |
echo "No results email was sent." |
1415 |
else |
1416 |
if test "x$HAVE_MPACK" = xt ; then |
1417 |
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1418 |
&& gzip $DRESULTS".tar" \ |
1419 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1420 |
RETVAL=$? |
1421 |
if test "x$RETVAL" != x0 ; then |
1422 |
echo |
1423 |
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1424 |
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1425 |
echo " summary of results from the directory \"$DRESULTS\"." |
1426 |
echo |
1427 |
else |
1428 |
echo |
1429 |
echo "An email containing results was sent to the following addresses:" |
1430 |
echo " \"$ADDRESSES\"" |
1431 |
echo |
1432 |
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1433 |
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1434 |
fi |
1435 |
fi |
1436 |
fi |
1437 |
|
1438 |
if test "x$QUICK" = xf -a "x$NORUN" = xf ; then |
1439 |
rm -f tr_cmpnum.c tr_cmpnum |
1440 |
fi |
1441 |
|
1442 |
if test "x$CLEANUP" != xt ; then |
1443 |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1444 |
if test -e tr_out.txt ; then |
1445 |
mv tr_out.txt tr_out.txt.old |
1446 |
fi |
1447 |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1448 |
fi |
1449 |
|
1450 |
if test "x$DELDIR" = xt ; then |
1451 |
rm -rf $DRESULTS |
1452 |
fi |