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#! /usr/bin/env bash |
2 |
# |
3 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.55 2004/12/09 15:52:33 edhill Exp $ |
4 |
# $Name: $ |
5 |
# |
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|
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usage() |
8 |
{ |
9 |
echo |
10 |
echo "Usage: $0 [OPTIONS]" |
11 |
echo |
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echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
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echo " (-mpi) use MPI input files" |
15 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
16 |
echo " (DEF=\"-ieee\")" |
17 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
18 |
echo " (-a|-addr) STRING list of email recipients" |
19 |
echo " (DEF=\"edhill@mitgcm.org\")" |
20 |
echo " (-t|-tdir) STRING list of test dirs to use" |
21 |
echo " (DEF=\"\" which builds all)" |
22 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
23 |
echo " Bourne-compatible \"sh\" shell" |
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echo " (DEF=\"\" for \"bash\")" |
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echo " (-adm|-ad) perform an adjoint run" |
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echo " (-command) STRING command to run" |
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echo " (DEF=\"make output.txt\")" |
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echo " (-m|-make) STRING command to use for \"make\"" |
29 |
echo " (DEF=\"make\")" |
30 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
31 |
echo " (DEF=\"1 2 3 4 5\")" |
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echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
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echo " (-clean) *ONLY* run \"make CLEAN\"" |
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echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
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echo " (-nogenmake|-ng) skip the genmake stage" |
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
37 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
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echo " (-deldir|-dd) on success, delete the output directory" |
39 |
echo |
40 |
echo "and where STRING can be a whitespace-delimited list" |
41 |
echo "such as:" |
42 |
echo |
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echo " -t 'exp0 exp2 exp3' " |
44 |
echo " -addr='abc@123.com testing@home.org'" |
45 |
echo |
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echo "provided that the expression is properly quoted within the current" |
47 |
echo "shell (note the use of single quotes to protect white space)." |
48 |
echo |
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exit 1 |
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} |
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|
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# build the mpack utility |
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build_mpack() |
54 |
{ |
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printf "building the mpack utility... " |
56 |
if test ! -x "$MPACKDIR/mpack" ; then |
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if test ! -d $MPACKDIR ; then |
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echo |
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echo "Error: can't find \"$MPACKDIR\"" |
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echo " are you sure this program is being run in the correct " |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
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echo |
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HAVE_MPACK=f |
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fi |
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printf "building mpack... " |
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if test "x$CC" = x ; then |
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export CC=cc |
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fi |
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( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo |
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echo "Error building the mpack tools at: $MPACK_DIR" |
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echo |
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HAVE_MPACK=f |
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else |
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rm -f tr_build_mpack.out |
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HAVE_MPACK=t |
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fi |
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else |
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HAVE_MPACK=t |
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fi |
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echo "OK" |
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} |
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|
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testoutput_for_prop() |
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{ |
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# testoutput_for_prop dir s1 label subdir extension |
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# |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
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# using search strings s1 and text label |
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|
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
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fi |
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if [ -r $1/$4/output.txt ]; then |
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grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
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lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
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if [ $lncnt -lt 3 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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else |
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echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
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return 99 |
108 |
fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
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fi |
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grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
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lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
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if [ $lncnt -lt 3 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
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fi |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
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if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: compare_lines 1>&2 |
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fi |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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echo "-1" >> tmp3.txt |
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# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
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digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
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if [ $digits_of_similarity -eq 99 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
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fi |
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digits_of_similarity=99 |
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else |
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if [ $verbose -gt 0 ]; then |
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
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fi |
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fi |
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rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
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|
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return $digits_of_similarity |
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} |
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|
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dashnum() |
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{ |
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# dashnum n1 n2 n3 ... |
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# |
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# print numbers using %3i format or "--" if number = 99 |
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|
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for num in $@ ; do |
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if [ $num = 99 ]; then |
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printf ' --' |
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else |
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printf '%3i' $num |
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fi |
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done |
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} |
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|
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testoutput_ad() |
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{ |
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grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt |
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grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt |
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grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt |
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grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt |
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join t05.txt t15.txt > t5.txt |
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join t06.txt t16.txt > t6.txt |
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echo "-1" >> t5.txt |
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echo "-1" >> t6.txt |
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digits_5=`./tmp_cmpnum < t5.txt` |
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digits_6=`./tmp_cmpnum < t6.txt` |
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dashnum $digits_5 $digits_6 |
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rm -f t[01][56].txt t[56].txt |
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} |
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|
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check_for_add_mon_output() |
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{ |
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# Check for additional types of monitor output |
183 |
if test "x$1" = x ; then |
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return |
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fi |
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|
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for ii in $PTRACERS_NUM ; do |
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eval "HAVE_PTR0"$ii"=f" |
189 |
done |
190 |
|
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ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
192 |
ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
193 |
for ii in $PTRACERS_NUM ; do |
194 |
for jj in $ptr_add ; do |
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name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
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tst=`grep $name $1 | wc -l | awk '{print $1}'` |
197 |
if test ! "x$tst" = x0 ; then |
198 |
eval "HAVE_PTR0"$ii"=t" |
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fi |
200 |
done |
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# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
202 |
done |
203 |
} |
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|
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testoutput() |
206 |
{ |
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# testoutput directory subdir extension |
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# |
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# test output in "directory" |
210 |
if test "x$ADM" = x ; then |
211 |
if [ $debug -gt 0 ]; then |
212 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
213 |
fi |
214 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
215 |
if [ $debug -gt 0 ]; then |
216 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
217 |
fi |
218 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
219 |
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
220 |
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
221 |
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
222 |
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
224 |
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
225 |
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
226 |
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
227 |
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
228 |
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
231 |
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
232 |
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
233 |
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
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|
235 |
# This is for PTRACERS |
236 |
for ii in $PTRACERS_NUM ; do |
237 |
eval `echo "p0"$ii"_min=99"` |
238 |
eval `echo "p0"$ii"_max=99"` |
239 |
eval `echo "p0"$ii"_mean=99"` |
240 |
eval `echo "p0"$ii"_sd=99"` |
241 |
tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
242 |
#echo 'tst = '$tst |
243 |
if test "x$tst" = xt ; then |
244 |
a="trcstat_ptracer0" |
245 |
testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
246 |
RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
247 |
testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
248 |
RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
249 |
testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
250 |
RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
251 |
testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
252 |
RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
253 |
fi |
254 |
done |
255 |
|
256 |
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
257 |
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
258 |
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
259 |
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
260 |
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
261 |
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
262 |
allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
263 |
|
264 |
eval "dashnum $allargs" |
265 |
|
266 |
else |
267 |
testoutput_ad $1 $2 "precision_grdchk_result" |
268 |
fi |
269 |
} |
270 |
|
271 |
genmakemodel() |
272 |
{ |
273 |
# genmakemodel directory |
274 |
if test "x$NOGENMAKE" = xt ; then |
275 |
echo "genmake skipped!" |
276 |
else |
277 |
if test "x$BASH" = x ; then |
278 |
GENMAKE2="../../../tools/genmake2" |
279 |
else |
280 |
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
281 |
fi |
282 |
( |
283 |
cd $1; |
284 |
command="$GENMAKE2 -ds -m $MAKE" |
285 |
if test "x$ADM" = x ; then |
286 |
command="$command --mods=../code" |
287 |
else |
288 |
command="$command --mods=../code_ad" |
289 |
command="$command -adof=../../../tools/adjoint_options/adjoint_staf" |
290 |
fi |
291 |
if test "x$OPTFILE" != xNONE ; then |
292 |
command="$command --optfile=$OPTFILE" |
293 |
fi |
294 |
if test "x$IEEE" != x ; then |
295 |
command="$command -ieee" |
296 |
fi |
297 |
printf 'genmake ... ' 1>&2 |
298 |
$command > make.log 2>&1 |
299 |
RETVAL=$? |
300 |
# Reduce the size of the testing emails! |
301 |
head -100 Makefile > $CDIR/Makefile_head |
302 |
if test "x$RETVAL" != x0 ; then |
303 |
tail make.log |
304 |
echo "genmakemodel: genmake failed" 1>&2 |
305 |
cp genmake_* make.log $CDIR |
306 |
return 1 |
307 |
else |
308 |
echo "successful" 1>&2 |
309 |
fi |
310 |
) |
311 |
fi |
312 |
} |
313 |
|
314 |
makeclean() |
315 |
{ |
316 |
# makeclean directory |
317 |
if test "x$NOCLEAN" = xt ; then |
318 |
echo "make CLEAN skipped!" |
319 |
else |
320 |
( |
321 |
cd $1; |
322 |
if test -e output.txt ; then |
323 |
rm -f output.txt |
324 |
fi |
325 |
printf 'make CLEAN ... ' 2>&1 |
326 |
if test -r Makefile ; then |
327 |
$MAKE CLEAN >> make.log 2>&1 |
328 |
RETVAL=$? |
329 |
if test "x$RETVAL" != x0 ; then |
330 |
tail make.log |
331 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
332 |
cp make.log $CDIR"/make.log" |
333 |
return 1 |
334 |
fi |
335 |
fi |
336 |
echo successful 1>&2 |
337 |
exit 0 |
338 |
) |
339 |
fi |
340 |
} |
341 |
|
342 |
makedependmodel() |
343 |
{ |
344 |
# makedependmodel directory |
345 |
if test "x$NODEPEND" = xt ; then |
346 |
echo "make depend skipped!" |
347 |
else |
348 |
( |
349 |
cd $1; |
350 |
printf 'make depend ... ' 1>&2 |
351 |
$MAKE depend >> make.log 2>&1 |
352 |
RETVAL=$? |
353 |
if test "x$RETVAL" != x0 ; then |
354 |
tail make.log |
355 |
echo "makedependmodel: make depend failed" 1>&2 |
356 |
cp make.log $CDIR"/make.log" |
357 |
return 1 |
358 |
else |
359 |
echo successful 1>&2 |
360 |
fi |
361 |
) |
362 |
fi |
363 |
} |
364 |
|
365 |
makemodel() |
366 |
{ |
367 |
# makemodel directory |
368 |
( |
369 |
cd $1; |
370 |
if test -r Makefile ; then |
371 |
printf 'make ... ' 1>&2 |
372 |
if test "x$ADM" = x ; then |
373 |
if test "x$JOBS" = x ; then |
374 |
$MAKE >> make.log 2>&1 |
375 |
else |
376 |
$MAKE -j $JOBS >> make.log 2>&1 |
377 |
fi |
378 |
else |
379 |
$MAKE adall >> make.log 2>&1 |
380 |
fi |
381 |
RETVAL=$? |
382 |
if test "x$RETVAL" != x0 ; then |
383 |
tail make.log |
384 |
echo failed 1>&2 |
385 |
cp make.log $CDIR"/make.log" |
386 |
return 1 |
387 |
else |
388 |
echo successful 1>&2 |
389 |
fi |
390 |
fi |
391 |
) |
392 |
} |
393 |
|
394 |
symlink_mpifiles() |
395 |
{ |
396 |
# Put special links so that MPI specific files are used |
397 |
# This MUST be invoked between makeclean and makelinks because |
398 |
# the Makefile will link to non-mpi files by default |
399 |
|
400 |
dir=$1 |
401 |
code_dir=$2 |
402 |
BUILD_DIR=$dir/$3 |
403 |
CODE_DIR=$dir/$code_dir |
404 |
|
405 |
# These are files that should replace their counter-part when using -mpi |
406 |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
407 |
|
408 |
# Is this an MPI run? |
409 |
if test "x$MPI" = xt ; then |
410 |
# YES: We symbolically link these files to the build |
411 |
# dir so long as there is no real file in place |
412 |
for ii in $MPI_FILES ; do |
413 |
i=`echo $ii | sed 's:^\./::'` |
414 |
name=`echo $i | sed 's:_mpi::' ` |
415 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
416 |
RETVAL=$? |
417 |
if test "x$RETVAL" != x0 ; then |
418 |
if ! test -f $BUILD_DIR/$i ; then |
419 |
#echo Linking $name to $i |
420 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
421 |
fi |
422 |
fi |
423 |
done |
424 |
else |
425 |
# NO: We undo any _mpi symbolically linked files |
426 |
for ii in $MPI_FILES ; do |
427 |
i=`echo $ii | sed 's:^\./::'` |
428 |
name=`echo $i | sed 's:_mpi::' ` |
429 |
if test -L $BUILD_DIR/$name ; then |
430 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
431 |
RETVAL=$? |
432 |
if test "x$RETVAL" = x0 ; then |
433 |
#echo Un-linking $name from $linktarg |
434 |
rm -f $BUILD_DIR/$name |
435 |
fi |
436 |
fi |
437 |
done |
438 |
fi |
439 |
|
440 |
} |
441 |
|
442 |
linkdata() |
443 |
{ |
444 |
# linkdata flag |
445 |
# |
446 |
# symbolically link data files to run directory |
447 |
if test "x$1" = x1 ; then |
448 |
( |
449 |
cd $2 |
450 |
if test "x$ADM" = x ; then |
451 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
452 |
for i in $files ; do |
453 |
if test ! -d "../input/"$i ; then |
454 |
ln -sf "../input/"$i $i |
455 |
fi |
456 |
done |
457 |
else |
458 |
files=`( cd ../input ; ls -1 *.bin | grep -v CVS )` |
459 |
for i in $files ; do |
460 |
if test ! -d "../input/"$i ; then |
461 |
ln -sf "../input/"$i $i |
462 |
fi |
463 |
done |
464 |
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
465 |
for i in $files ; do |
466 |
if test ! -d "../input_ad/"$i ; then |
467 |
ln -sf "../input_ad/"$i $i |
468 |
fi |
469 |
done |
470 |
fi |
471 |
) |
472 |
fi |
473 |
} |
474 |
|
475 |
runmodel() |
476 |
{ |
477 |
# runmodel directory |
478 |
# |
479 |
# runs "$COMMAND in "directory" |
480 |
# (where "$COMMAND" is relative to "directory") |
481 |
( |
482 |
cd $1 |
483 |
printf 'runmodel ... ' 1>&2 |
484 |
# make output.txt |
485 |
echo |
486 |
rm -f run.log |
487 |
# echo "COMMAND='$COMMAND'" |
488 |
# echo "pwd='"`pwd`"'" |
489 |
( eval $COMMAND ) > run.log 2>&1 |
490 |
RETVAL=$? |
491 |
if test "x$RETVAL" = x0 ; then |
492 |
tail run.log |
493 |
echo successful 1>&2 |
494 |
# === Reduce the size of the testing emails! |
495 |
# if test "x$ADM" = x ; then |
496 |
# cp output.txt $CDIR"/output.txt" |
497 |
# else |
498 |
# cp output.txt_adm $CDIR"/output.txt_adm" |
499 |
# fi |
500 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
501 |
return 0 |
502 |
else |
503 |
tail run.log |
504 |
echo failed 1>&2 |
505 |
cp run.log $CDIR"/run.log" |
506 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
507 |
return 1 |
508 |
fi |
509 |
) |
510 |
} |
511 |
|
512 |
createcodelet() |
513 |
{ |
514 |
# create codelet for comparing model output |
515 |
|
516 |
printf "creating the comparison code... " |
517 |
cat > tmp_cmpnum.c <<EOF |
518 |
#include <stdio.h> |
519 |
#include <math.h> |
520 |
int main( int argc, char** argv ) { |
521 |
int linnum,best,lncnt; |
522 |
double a,b,abave,relerr; |
523 |
best = -16; |
524 |
lncnt = 0; |
525 |
while( 1 & (lncnt+=1) < 999 ) { |
526 |
scanf("%d", &linnum); |
527 |
if (linnum == -1) break; |
528 |
scanf("%lf", &a); scanf("%lf", &b); |
529 |
abave = 0.5*(fabs(a)+fabs(b)); |
530 |
if (abave > 0.0) { |
531 |
relerr=fabs(a-b)/abave; |
532 |
if (relerr > 0.0) { |
533 |
linnum = (int)log10(relerr); |
534 |
best = (best > linnum) ? best : linnum; |
535 |
} |
536 |
} |
537 |
else { |
538 |
if (best == -16) best = -22; |
539 |
} |
540 |
} |
541 |
if (lncnt == 999) best=-29; |
542 |
printf("%d\n", -best); |
543 |
return 0; |
544 |
} |
545 |
EOF |
546 |
cc -o tmp_cmpnum tmp_cmpnum.c -lm |
547 |
|
548 |
if [ -x ./tmp_cmpnum ]; then |
549 |
echo "OK" |
550 |
return 0 |
551 |
else |
552 |
echo |
553 |
echo "ERROR: failed to compile comparison code" |
554 |
exit 1 |
555 |
fi |
556 |
} |
557 |
|
558 |
formatresults() |
559 |
{ |
560 |
# formatresults expt genmake depend make run results* |
561 |
|
562 |
nm=$1 |
563 |
printf '%s %s %s %s' $2 $3 $4 $5 |
564 |
shift; shift; shift; shift; shift; |
565 |
printf '%3s' $@ |
566 |
|
567 |
if [ $1 = '--' ]; then |
568 |
printf ' N/O ' |
569 |
else |
570 |
if [ $1 -gt 12 ]; then |
571 |
printf ' pass' |
572 |
else |
573 |
printf ' FAIL' |
574 |
fi |
575 |
fi |
576 |
printf ' %s' $nm |
577 |
printf '\n' |
578 |
|
579 |
} |
580 |
|
581 |
show_help() |
582 |
{ |
583 |
cat - << EOF |
584 |
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
585 |
|
586 |
-help|-h Show this help message |
587 |
-quiet Reduce the amount of output |
588 |
-verbose Produce copious amounts of output |
589 |
-debug Produce even more output which will mean nothing to most |
590 |
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
591 |
-clean Do "make CLEAN" after compiling and testing. |
592 |
-cleanup Aggresively removes all model output, executables and object files |
593 |
and then exits. Use with care. |
594 |
|
595 |
Normal usage: |
596 |
$0 * Configure, compile, run and analyze in all experiment directories |
597 |
EOF |
598 |
} |
599 |
|
600 |
scandirs() |
601 |
{ |
602 |
if [ $# -eq 0 ]; then |
603 |
for arg in * ; do |
604 |
test -d $arg/input && echo $arg |
605 |
done |
606 |
else |
607 |
echo $* |
608 |
fi |
609 |
} |
610 |
|
611 |
|
612 |
############################################################################### |
613 |
|
614 |
|
615 |
# Default properties |
616 |
debug=0 |
617 |
verbose=1 |
618 |
clean=0 |
619 |
expts='' |
620 |
# ieee=1 |
621 |
|
622 |
IEEE=true |
623 |
if test "x$MITGCM_IEEE" != x ; then |
624 |
IEEE=$MITGCM_IEEE |
625 |
fi |
626 |
|
627 |
|
628 |
CLEANUP=f |
629 |
QUICK=f |
630 |
NOGENMAKE=f |
631 |
NOCLEAN=f |
632 |
NODEPEND=f |
633 |
|
634 |
BASH= |
635 |
OPTFILE=NONE |
636 |
ADDRESSES= |
637 |
TESTDIRS= |
638 |
MPACKDIR="../tools/mpack-1.6" |
639 |
HAVE_MPACK= |
640 |
MPACK="$MPACKDIR/mpack" |
641 |
COMMAND= |
642 |
MAKE=make |
643 |
JOBS= |
644 |
MPI=f |
645 |
DELDIR= |
646 |
|
647 |
ADM= |
648 |
|
649 |
# Additional monitor types |
650 |
PTRACERS_NUM="1 2 3 4 5" |
651 |
|
652 |
printf "parsing options... " |
653 |
|
654 |
ac_prev= |
655 |
for ac_option ; do |
656 |
|
657 |
# If the previous option needs an argument, assign it. |
658 |
if test -n "$ac_prev"; then |
659 |
eval "$ac_prev=\$ac_option" |
660 |
ac_prev= |
661 |
continue |
662 |
fi |
663 |
|
664 |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
665 |
|
666 |
case $ac_option in |
667 |
|
668 |
-help | --help | -h | --h) |
669 |
usage ;; |
670 |
|
671 |
-optfile | --optfile | -of | --of) |
672 |
ac_prev=OPTFILE ;; |
673 |
-optfile=* | --optfile=* | -of=* | --of=*) |
674 |
OPTFILE=$ac_optarg ;; |
675 |
|
676 |
-addr | --addr | -a | --a) |
677 |
ac_prev=ADDRESSES ;; |
678 |
-addr=* | --addr=*) |
679 |
ADDRESSES=$ac_optarg ;; |
680 |
|
681 |
-tdir | --tdir | -t | --t) |
682 |
ac_prev=TESTDIRS ;; |
683 |
-tdir=* | --tdir=*) |
684 |
TESTDIRS=$ac_optarg ;; |
685 |
|
686 |
-bash | --bash | -b | --b) |
687 |
ac_prev=BASH ;; |
688 |
-bash=* | --bash=*) |
689 |
BASH=$ac_optarg ;; |
690 |
|
691 |
-command | --command | -c | --c) |
692 |
ac_prev=COMMAND ;; |
693 |
-command=* | --command=*) |
694 |
COMMAND=$ac_optarg ;; |
695 |
|
696 |
-make | --make | -m | --m) |
697 |
ac_prev=MAKE ;; |
698 |
-make=* | --make=*) |
699 |
MAKE=$ac_optarg ;; |
700 |
|
701 |
-ptracers | --ptracers | -ptr | --ptr) |
702 |
ac_prev=PTRACERS_NUM ;; |
703 |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
704 |
PTRACERS_NUM=$ac_optarg ;; |
705 |
|
706 |
-j) ac_prev=JOBS ;; |
707 |
-j=*) JOBS=$ac_optarg ;; |
708 |
|
709 |
-clean | --clean) |
710 |
CLEANUP=t ;; |
711 |
|
712 |
-quick | --quick | -q | --q) |
713 |
QUICK=t ;; |
714 |
-nogenmake | --nogenmake | -ng | --ng) |
715 |
NOGENMAKE=t ;; |
716 |
-noclean | --noclean | -nc | --nc) |
717 |
NOCLEAN=t ;; |
718 |
-nodepend | --nodepend | -nd | --nd) |
719 |
NODEPEND=t ;; |
720 |
|
721 |
-mpi) MPI=t ;; |
722 |
|
723 |
-adm | -ad) ADM=t ;; |
724 |
|
725 |
-ieee) IEEE=true ;; |
726 |
-noieee) IEEE= ;; |
727 |
|
728 |
-verbose) verbose=2 ;; |
729 |
-debug) debug=1 ;; |
730 |
-quiet) verbose=0 ;; |
731 |
|
732 |
-deldir | -dd) DELDIR=t ;; |
733 |
|
734 |
-*) |
735 |
echo "Error: unrecognized option: "$ac_option |
736 |
usage |
737 |
;; |
738 |
|
739 |
*) |
740 |
echo "Error: unrecognized argument: "$ac_option |
741 |
usage |
742 |
;; |
743 |
|
744 |
esac |
745 |
|
746 |
done |
747 |
|
748 |
if test "x$QUICK" = xt ; then |
749 |
NOGENMAKE=t |
750 |
NOCLEAN=t |
751 |
NODEPEND=t |
752 |
fi |
753 |
|
754 |
if test "x$TESTDIRS" = x ; then |
755 |
TESTDIRS=`scandirs` |
756 |
fi |
757 |
|
758 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
759 |
OPTFILE=$MITGCM_OF |
760 |
fi |
761 |
|
762 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
763 |
COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1" |
764 |
fi |
765 |
|
766 |
if test "x$COMMAND" = x ; then |
767 |
COMMAND="$MAKE output.txt" |
768 |
fi |
769 |
|
770 |
echo "OK" |
771 |
|
772 |
# create the FORTRAN comparison code |
773 |
createcodelet |
774 |
|
775 |
# build the mpack utility |
776 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
777 |
echo "skipping mpack build" |
778 |
else |
779 |
build_mpack |
780 |
fi |
781 |
|
782 |
# Create a uniquely named directory to store results |
783 |
MACH=`hostname` |
784 |
UNAMEA=`uname -a` |
785 |
DATE=`date +%Y%m%d` |
786 |
BASE="tr_"$MACH"_"$DATE"_" |
787 |
DNUM=0 |
788 |
DRESULTS="$BASE$DNUM" |
789 |
while test -e $DRESULTS ; do |
790 |
DNUM=$(( $DNUM + 1 )) |
791 |
DRESULTS="$BASE$DNUM" |
792 |
done |
793 |
mkdir $DRESULTS |
794 |
RETVAL=$? |
795 |
if test "x$RETVAL" != x0 ; then |
796 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
797 |
exit 1 |
798 |
fi |
799 |
SUMMARY="$DRESULTS/summary.txt" |
800 |
printf "Start time: " >> $SUMMARY |
801 |
start_date=`date` |
802 |
echo $start_date > $SUMMARY |
803 |
|
804 |
of_path= |
805 |
if test "x$OPTFILE" != xNONE ; then |
806 |
if test -r $OPTFILE ; then |
807 |
# get the path |
808 |
path=${OPTFILE%/*} |
809 |
if test "x$path" = x ; then |
810 |
of_path=`pwd` |
811 |
else |
812 |
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
813 |
fi |
814 |
file=${OPTFILE##*/} |
815 |
OPTFILE=$of_path/$file |
816 |
cp $OPTFILE $DRESULTS |
817 |
echo >> $SUMMARY |
818 |
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
819 |
else |
820 |
echo | tee $SUMMARY |
821 |
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
822 |
exit 1 |
823 |
fi |
824 |
else |
825 |
echo >> $SUMMARY |
826 |
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
827 |
echo " so the genmake default will be used." >> $SUMMARY |
828 |
fi |
829 |
echo |
830 |
echo >> $SUMMARY |
831 |
if test "x$ADM" = x ; then |
832 |
line_0=" ----T----- ----S----- ----U----- ----V-----" |
833 |
line_1="G D M c m s m s m s m s" |
834 |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
835 |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
836 |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
837 |
for ii in $PTRACERS_NUM ; do |
838 |
# tst=`eval 'echo $HAVE_PTR0'$ii` |
839 |
# if test "x$tst" = xt ; then |
840 |
line_0="$line_0 --PTR 0"$ii"--" |
841 |
line_1="$line_1 m s" |
842 |
line_2="$line_2 m m e ." |
843 |
line_3="$line_3 i a a d" |
844 |
line_4="$line_4 n x n ." |
845 |
# fi |
846 |
done |
847 |
echo "$line_0" | tee -a $SUMMARY |
848 |
echo "$line_1" | tee -a $SUMMARY |
849 |
echo "$line_2" | tee -a $SUMMARY |
850 |
echo "$line_3" | tee -a $SUMMARY |
851 |
echo "$line_4" | tee -a $SUMMARY |
852 |
echo " " | tee -a $SUMMARY |
853 |
else |
854 |
echo "ADJOINT=true" >> $SUMMARY |
855 |
echo >> $SUMMARY |
856 |
cat << EOF | tee -a $SUMMARY |
857 |
G D M C G |
858 |
E p a R o r |
859 |
N n k u s a |
860 |
2 d e n t d |
861 |
|
862 |
EOF |
863 |
fi |
864 |
|
865 |
# ...and each test directory... |
866 |
for dir in $TESTDIRS ; do |
867 |
|
868 |
# Cleanup only! |
869 |
if test "x$CLEANUP" = xt ; then |
870 |
if test -r $dir/build/Makefile ; then |
871 |
( cd $dir/build ; make CLEAN ) |
872 |
fi |
873 |
if test -r $dir/input/Makefile ; then |
874 |
( cd $dir/input ; make CLEAN ) |
875 |
fi |
876 |
continue |
877 |
fi |
878 |
|
879 |
# Verify that the testdir exists and contains previous |
880 |
# results in the correct location--or skip this directory! |
881 |
fout= |
882 |
if test "x$ADM" = x ; then |
883 |
fout=$dir"/results/output.txt" |
884 |
else |
885 |
fout=$dir"/results_ad/output.txt_adm" |
886 |
fi |
887 |
if test ! -r $fout ; then |
888 |
echo "can't read \"$fout\" -- skipping $dir" |
889 |
continue |
890 |
fi |
891 |
if test "x$ADM" = x ; then |
892 |
check_for_add_mon_output $fout |
893 |
fi |
894 |
|
895 |
# Check for additional types of monitor output |
896 |
|
897 |
builddir="input" |
898 |
rundir="input" |
899 |
use_seperate_build=0 |
900 |
if test -d $dir/build -a -r $dir/build ; then |
901 |
builddir="build" |
902 |
rundir="build" |
903 |
use_seperate_build=1 |
904 |
linkdata $use_seperate_build $dir/$rundir |
905 |
fi |
906 |
|
907 |
# Check whether there are "extra runs" for this testdir |
908 |
extra_runs= |
909 |
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
910 |
ex_run_dirs=`( cd $dir ; echo input.* )` |
911 |
echo "ex_run_dirs='$ex_run_dirs'" |
912 |
for exd in $ex_run_dirs ; do |
913 |
name=`echo $exd | sed -e 's/input.//g'` |
914 |
outf="$dir/results/output.txt.$name" |
915 |
if test -f $outf -a -r $outf ; then |
916 |
extra_runs="$extra_runs $name" |
917 |
fi |
918 |
done |
919 |
fi |
920 |
|
921 |
if test "x$ADM" = x ; then |
922 |
code_dir=code |
923 |
CODE_DIR=$dir/code |
924 |
else |
925 |
code_dir=code_ad |
926 |
CODE_DIR=$dir/code_ad |
927 |
fi |
928 |
BUILD_DIR=$dir/$builddir |
929 |
|
930 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
931 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
932 |
continue |
933 |
fi |
934 |
|
935 |
echo "-------------------------------------------------------------------------------" |
936 |
echo |
937 |
echo "Experiment: $dir" |
938 |
echo |
939 |
unset genmake makedepend make run |
940 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
941 |
|
942 |
# Create an output dir for each OPTFILE/tdir combination |
943 |
rel_CDIR=$DRESULTS"/"$dir |
944 |
mkdir $rel_CDIR |
945 |
CDIR=`pwd`"/$rel_CDIR" |
946 |
|
947 |
if test "x$CLEANUP" = xt ; then |
948 |
makeclean $dir/$builddir |
949 |
else |
950 |
genmakemodel $dir/$builddir && genmake=Y \ |
951 |
&& makeclean $dir/$builddir \ |
952 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
953 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
954 |
&& makemodel $dir/$builddir && make=Y \ |
955 |
&& linkdata $use_seperate_build $dir/$rundir \ |
956 |
&& runmodel $dir/$rundir && run=Y \ |
957 |
&& results=`testoutput $dir $rundir` |
958 |
fi |
959 |
|
960 |
echo |
961 |
if test "x$ADM" = x ; then |
962 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
963 |
echo |
964 |
echo "$fres" >> $SUMMARY |
965 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
966 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
967 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
968 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
969 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
970 |
|
971 |
for ex in $extra_runs ; do |
972 |
test -e "$dir/tr_run.$ex" && rm -rf "$dir/tr_run.$ex" |
973 |
mkdir "$dir/tr_run.$ex" |
974 |
links=`( cd "$dir/input" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
975 |
( |
976 |
cd "$dir/tr_run.$ex" |
977 |
for i in $links; do |
978 |
ln -s ../input/$i $i |
979 |
done |
980 |
) |
981 |
links=`( cd "$dir/input.$ex" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
982 |
( |
983 |
cd "$dir/tr_run.$ex" |
984 |
for i in $links; do |
985 |
test -e $i && rm -f $i |
986 |
ln -s ../input.$ex/$i $i |
987 |
done |
988 |
ln -s ../$builddir/mitgcmuv mitgcmuv |
989 |
) |
990 |
runmodel $dir/tr_run.$ex && run=Y \ |
991 |
&& results=`testoutput $dir tr_run.$ex "."$ex` |
992 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
993 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
994 |
fres="$fres.$ex" |
995 |
echo |
996 |
echo "$fres" >> $SUMMARY |
997 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
998 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
999 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1000 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1001 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1002 |
done |
1003 |
else |
1004 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1005 |
fres=$fres"$results $dir" |
1006 |
echo |
1007 |
echo "$fres" >> $SUMMARY |
1008 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1009 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1010 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1011 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1012 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1013 |
fi |
1014 |
|
1015 |
echo "-------------------------------------------------------------------------------" |
1016 |
|
1017 |
done |
1018 |
|
1019 |
printf "Start time: " >> $SUMMARY |
1020 |
echo $start_date >> $SUMMARY |
1021 |
printf "End time: " >> $SUMMARY |
1022 |
date >> $SUMMARY |
1023 |
|
1024 |
# If addresses were supplied and mpack built successfully, then try |
1025 |
# to send email using mpack. |
1026 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1027 |
echo "No results email was sent." |
1028 |
else |
1029 |
if test "x$HAVE_MPACK" = xt ; then |
1030 |
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1031 |
&& gzip $DRESULTS".tar" \ |
1032 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1033 |
RETVAL=$? |
1034 |
if test "x$RETVAL" != x0 ; then |
1035 |
echo |
1036 |
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1037 |
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1038 |
echo " summary of results from the directory \"$DRESULTS\"." |
1039 |
echo |
1040 |
else |
1041 |
echo |
1042 |
echo "An email containing results was sent to the following addresses:" |
1043 |
echo " \"$ADDRESSES\"" |
1044 |
echo |
1045 |
fi |
1046 |
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1047 |
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1048 |
fi |
1049 |
fi |
1050 |
|
1051 |
# rm -f tmp_cmpnum.f a.out |
1052 |
rm -f tmp_cmpnum.c tmp_cmpnum |
1053 |
|
1054 |
if test "x$CLEANUP" != xt ; then |
1055 |
cat $SUMMARY |
1056 |
if test -e tr_out.txt ; then |
1057 |
mv tr_out.txt tr_out.txt.old |
1058 |
fi |
1059 |
cat $SUMMARY > tr_out.txt |
1060 |
fi |
1061 |
|
1062 |
if test "x$DELDIR" = xt ; then |
1063 |
rm -rf $DRESULTS |
1064 |
fi |