--- MITgcm/verification/testreport	2003/10/09 04:19:20	1.10
+++ MITgcm/verification/testreport	2003/11/18 04:33:01	1.18
@@ -1,6 +1,7 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/testreport,v 1.10 2003/10/09 04:19:20 edhill Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/testreport,v 1.18 2003/11/18 04:33:01 edhill Exp $
+#  $Name:  $
 #
 
 usage()
@@ -80,7 +81,7 @@
 	echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
     fi
     if [ -r $1/$4/output.txt ]; then
-	grep "$2" $1/$4/output.txt | sed 's/.*=//' | nl > tmp1.txt
+	grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
 	lncnt=`wc -l tmp1.txt | awk '{print $1}' `
 	if [ $lncnt -lt 3 ]; then
 	    if [ $verbose -gt 0 ]; then
@@ -95,7 +96,7 @@
     if [ $debug -gt 0 ]; then
 	echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2
     fi
-    grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt
+    grep "$2" $1/results/output.txt | sed 's/.*=//' | cat -n > tmp2.txt
     lncnt=`wc -l tmp2.txt | awk '{print $1}' `
     if [ $lncnt -lt 3 ]; then
 	if [ $verbose -gt 0 ]; then
@@ -155,7 +156,6 @@
     if [ $debug -gt 0 ]; then
 	echo testoutput: cg2dres=$cg2dres 1>&2
     fi
-    
     testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$?
     testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$?
     testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$?
@@ -292,8 +292,16 @@
     # linkdata flag
     #
     # symbolically link data files to run directory
-    if [ $1 -ne 0 ]; then
-	( cd $2 ;  ln -sf ../input/* . )
+    if test "x$1" = x1 ; then
+	(
+	    cd $2
+	    files=`( cd ../input ; ls -1 | grep -v CVS )`
+	    for i in $files ; do
+		if test ! -d "../input/"$i ; then
+		    ln -sf "../input/"$i $i
+		fi
+	    done
+	)
     fi
 }
 
@@ -508,7 +516,7 @@
 	-nodepend | --nodepend | -nd | --nd)
 	    NODEPEND=t ;;
 
-	-mpi) MPI=true ;;
+	-mpi) MPI=t ;;
 
 	-ieee) IEEE=true ;;
 	-noieee) IEEE= ;;
@@ -571,7 +579,9 @@
     exit 1
 fi
 SUMMARY="$DRESULTS/summary.txt"
-date > $SUMMARY
+echo -n "Start time:  " >> $SUMMARY
+start_date=`date`
+echo $start_date > $SUMMARY
 cat << EOF >> $SUMMARY
                 T           S           U           V
 G D M    c        m  s        m  s        m  s        m  s
@@ -583,9 +593,21 @@
 
 NDIR=0
 
+of_path=
 if test "x$OPTFILE" != xNONE ; then
     if test -r $OPTFILE ; then
-	OPTFILE=`pwd`"/$OPTFILE"
+	# get the path
+	path=${OPTFILE%/*}
+	if test "x$path" = x ; then
+	    of_path=`pwd`
+	else
+	    of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
+	fi
+	file=${OPTFILE##*/}
+	OPTFILE=$of_path/$file
+    else
+	echo
+	echo "WARNING: can't read OPTFILE=\"$OPTFILE\" but will try to use it..."
     fi
 fi
 echo
@@ -620,15 +642,14 @@
     unset genmake makedepend make run
     results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
 
-    if [ -r $dir/build ]; then
-	seperatebuilddir=1
-	builddir=build
-	rundir=build
-	( cd $dir/build; ln -sf ../input/* . )
-    else
-	seperatebuilddir=0
-	builddir=input
-	rundir=input
+    builddir="input"
+    rundir="input"
+    use_seperate_build=0
+    if test -d $dir/build -a -r $dir/build ; then
+	builddir="build"
+	rundir="build"
+	use_seperate_build=1
+	linkdata $use_seperate_build $dir/$rundir
     fi
     
     CODE_DIR=$dir/code
@@ -683,8 +704,8 @@
 	    && makeclean $dir/$builddir \
 	    && makedependmodel $dir/$builddir && makedepend=Y \
 	    && makemodel $dir/$builddir && make=Y \
-	    && linkdata $seperatebuilddir $dir/$rundir \
-	    && runmodel $dir/$builddir && run=Y \
+	    && linkdata $use_seperate_build $dir/$rundir \
+	    && runmodel $dir/$rundir && run=Y \
 	    && results=`testoutput $dir $rundir`
     fi
     
@@ -727,7 +748,18 @@
     
 done
 
+echo -n "Start time:  " >> $SUMMARY
+echo $start_date >> $SUMMARY
+echo -n "End time:    " >> $SUMMARY
+date >> $SUMMARY
+
 rm tmp_cmpnum.f a.out
 
-cat $SUMMARY
+if test "x$CLEANUP" != xt ; then
+    cat $SUMMARY
+    if test -e tr.out ; then
+        mv tr.out tr.out.old
+    fi
+    cat $SUMMARY > tr.out
+fi